Query 044860
Match_columns 279
No_of_seqs 229 out of 3356
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-33 2.2E-38 267.5 22.2 263 8-276 27-290 (968)
2 PLN00113 leucine-rich repeat r 100.0 5E-28 1.1E-32 228.9 17.3 225 52-277 139-363 (968)
3 KOG4194 Membrane glycoprotein 99.9 1.8E-25 4E-30 188.0 4.4 225 53-278 125-349 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.4E-25 3.1E-30 188.6 1.8 228 50-278 170-424 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.1E-24 6.6E-29 182.4 -3.9 218 53-277 55-298 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 5.7E-22 1.2E-26 168.8 -2.2 220 53-278 32-253 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 1.9E-21 4.2E-26 157.3 -3.4 103 54-163 207-310 (565)
8 KOG4237 Extracellular matrix p 99.8 3.7E-20 8E-25 149.5 -0.5 226 51-277 65-353 (498)
9 PLN03210 Resistant to P. syrin 99.8 3E-17 6.5E-22 157.0 18.1 217 53-276 611-899 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 1.2E-21 2.6E-26 158.5 -10.4 215 52-276 67-303 (565)
11 KOG0617 Ras suppressor protein 99.8 1E-20 2.3E-25 136.5 -4.9 181 73-260 29-213 (264)
12 PLN03210 Resistant to P. syrin 99.8 2.4E-17 5.3E-22 157.6 16.1 201 52-257 633-904 (1153)
13 KOG0618 Serine/threonine phosp 99.7 6.3E-20 1.4E-24 162.0 -2.9 219 53-278 241-484 (1081)
14 KOG0617 Ras suppressor protein 99.7 5.7E-20 1.2E-24 132.7 -4.7 162 52-220 32-194 (264)
15 KOG4237 Extracellular matrix p 99.7 1.7E-19 3.7E-24 145.7 -5.1 208 51-259 89-359 (498)
16 cd00116 LRR_RI Leucine-rich re 99.7 4.1E-18 8.9E-23 142.1 1.1 226 52-277 50-314 (319)
17 cd00116 LRR_RI Leucine-rich re 99.7 4.6E-18 1E-22 141.8 0.8 224 54-278 24-286 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 1.8E-16 4E-21 143.3 10.6 97 54-163 200-296 (754)
19 PRK15387 E3 ubiquitin-protein 99.7 1.9E-15 4E-20 136.4 16.2 196 54-277 223-452 (788)
20 PRK15370 E3 ubiquitin-protein 99.7 1.4E-15 3E-20 137.7 13.3 184 54-260 179-381 (754)
21 KOG0618 Serine/threonine phosp 99.6 6.8E-18 1.5E-22 149.4 -3.4 219 51-279 217-461 (1081)
22 PRK15387 E3 ubiquitin-protein 99.6 3E-15 6.5E-20 135.1 12.4 192 52-269 241-468 (788)
23 PLN03150 hypothetical protein; 99.6 7.1E-15 1.5E-19 132.1 13.3 153 5-163 367-528 (623)
24 COG4886 Leucine-rich repeat (L 99.4 6.2E-13 1.3E-17 114.2 6.5 198 57-264 97-295 (394)
25 KOG0532 Leucine-rich repeat (L 99.3 1.6E-14 3.6E-19 122.2 -5.1 170 56-235 78-247 (722)
26 KOG1259 Nischarin, modulator o 99.3 3.3E-13 7.3E-18 106.3 1.0 201 54-262 183-415 (490)
27 PF14580 LRR_9: Leucine-rich r 99.3 5.2E-12 1.1E-16 94.5 6.1 123 149-276 18-146 (175)
28 KOG0532 Leucine-rich repeat (L 99.3 9.2E-14 2E-18 117.7 -4.0 177 76-262 74-250 (722)
29 COG4886 Leucine-rich repeat (L 99.3 5.9E-12 1.3E-16 108.2 5.9 178 53-239 116-294 (394)
30 KOG3207 Beta-tubulin folding c 99.2 6.4E-13 1.4E-17 109.3 -1.6 209 51-259 119-339 (505)
31 KOG3207 Beta-tubulin folding c 99.2 1.6E-12 3.5E-17 107.0 -0.3 203 74-276 118-332 (505)
32 KOG1909 Ran GTPase-activating 99.2 1.4E-12 3E-17 104.5 -0.9 134 125-258 157-310 (382)
33 PF14580 LRR_9: Leucine-rich r 99.2 2.7E-11 5.9E-16 90.6 4.8 123 126-252 20-146 (175)
34 PLN03150 hypothetical protein; 99.1 2.1E-10 4.5E-15 103.5 8.6 92 176-267 420-511 (623)
35 KOG4658 Apoptotic ATPase [Sign 99.0 1.4E-10 3E-15 107.3 4.1 111 49-161 541-653 (889)
36 PF13855 LRR_8: Leucine rich r 99.0 4.3E-10 9.3E-15 69.5 3.7 60 199-258 2-61 (61)
37 KOG1909 Ran GTPase-activating 99.0 5.4E-11 1.2E-15 95.5 -0.7 226 52-278 29-306 (382)
38 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.8E-14 66.7 3.9 61 174-234 1-61 (61)
39 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4.2E-15 90.9 -1.3 127 102-235 285-412 (490)
40 KOG4658 Apoptotic ATPase [Sign 98.9 9.7E-09 2.1E-13 95.3 8.9 217 54-274 524-798 (889)
41 KOG2120 SCF ubiquitin ligase, 98.8 1.3E-10 2.9E-15 91.7 -5.8 194 78-273 186-390 (419)
42 KOG1859 Leucine-rich repeat pr 98.7 4.6E-11 9.9E-16 104.5 -9.6 180 70-259 102-292 (1096)
43 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 93.5 -2.7 174 77-259 72-268 (414)
44 KOG0531 Protein phosphatase 1, 98.6 4.7E-09 1E-13 90.7 -0.8 172 52-235 94-268 (414)
45 PF08263 LRRNT_2: Leucine rich 98.5 2E-07 4.2E-12 52.8 3.7 40 9-49 2-43 (43)
46 KOG2120 SCF ubiquitin ligase, 98.4 7E-09 1.5E-13 82.1 -5.2 174 102-278 186-371 (419)
47 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.6E-12 75.3 0.9 87 75-161 69-157 (418)
48 KOG1644 U2-associated snRNP A' 98.3 1.3E-06 2.8E-11 65.6 6.1 106 149-256 41-150 (233)
49 KOG2982 Uncharacterized conser 98.3 8.2E-08 1.8E-12 76.2 -0.3 201 51-252 69-285 (418)
50 PF12799 LRR_4: Leucine Rich r 98.2 1.4E-06 3E-11 49.5 3.1 38 222-260 1-38 (44)
51 KOG1859 Leucine-rich repeat pr 98.2 5.3E-08 1.1E-12 85.8 -4.3 101 152-259 166-267 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.2 8.6E-07 1.9E-11 69.6 2.7 39 99-137 90-132 (388)
53 KOG4579 Leucine-rich repeat (L 98.2 1.2E-07 2.5E-12 66.8 -2.5 90 52-144 52-141 (177)
54 PF13306 LRR_5: Leucine rich r 98.1 1.6E-05 3.5E-10 56.9 7.0 126 142-273 4-129 (129)
55 KOG1644 U2-associated snRNP A' 98.0 7.3E-06 1.6E-10 61.7 4.7 102 174-277 42-147 (233)
56 COG5238 RNA1 Ran GTPase-activa 98.0 1.5E-06 3.2E-11 68.4 0.7 212 48-260 53-317 (388)
57 KOG4579 Leucine-rich repeat (L 98.0 2.4E-07 5.3E-12 65.2 -3.6 83 99-185 51-134 (177)
58 PRK15386 type III secretion pr 98.0 3.9E-05 8.4E-10 65.0 8.2 71 53-136 52-123 (426)
59 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 45.7 3.2 33 79-112 3-35 (44)
60 PRK15386 type III secretion pr 97.9 8.7E-05 1.9E-09 62.9 9.1 137 73-233 48-188 (426)
61 PF13306 LRR_5: Leucine rich r 97.9 0.00011 2.3E-09 52.6 7.9 105 72-182 7-111 (129)
62 KOG3665 ZYG-1-like serine/thre 97.8 9.7E-06 2.1E-10 73.8 2.5 196 54-252 61-281 (699)
63 KOG3665 ZYG-1-like serine/thre 97.8 1.5E-05 3.2E-10 72.7 2.6 84 148-233 146-231 (699)
64 KOG4341 F-box protein containi 97.5 3.7E-06 8E-11 69.9 -4.7 83 196-278 344-434 (483)
65 KOG2123 Uncharacterized conser 97.3 1.3E-05 2.7E-10 63.5 -3.8 100 173-276 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00027 6E-09 55.4 1.6 83 54-138 44-129 (260)
67 KOG2739 Leucine-rich acidic nu 96.9 0.00066 1.4E-08 53.3 2.4 91 69-163 35-129 (260)
68 KOG2123 Uncharacterized conser 96.8 3.4E-05 7.4E-10 61.1 -5.2 99 54-156 20-123 (388)
69 KOG1947 Leucine rich repeat pr 96.8 9E-05 1.9E-09 65.4 -3.6 12 148-159 293-304 (482)
70 KOG1947 Leucine rich repeat pr 96.6 9.4E-05 2E-09 65.2 -4.5 111 76-186 187-307 (482)
71 PF00560 LRR_1: Leucine Rich R 96.3 0.0015 3.3E-08 30.8 0.6 19 248-267 2-20 (22)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0086 1.9E-07 28.1 0.8 18 224-242 2-19 (22)
73 KOG4308 LRR-containing protein 94.9 6.9E-05 1.5E-09 65.5 -12.3 180 79-259 89-303 (478)
74 KOG3864 Uncharacterized conser 94.8 0.0046 1E-07 46.9 -1.3 80 175-254 102-184 (221)
75 KOG3864 Uncharacterized conser 94.4 0.0078 1.7E-07 45.7 -0.9 80 199-278 102-184 (221)
76 PF13516 LRR_6: Leucine Rich r 94.0 0.027 5.9E-07 27.0 0.9 22 245-266 1-22 (24)
77 PF13504 LRR_7: Leucine rich r 93.7 0.05 1.1E-06 23.7 1.4 13 247-259 2-14 (17)
78 KOG4308 LRR-containing protein 93.3 0.00037 8.1E-09 61.0 -11.1 175 103-277 89-297 (478)
79 smart00369 LRR_TYP Leucine-ric 93.2 0.097 2.1E-06 25.5 2.2 21 125-146 2-22 (26)
80 smart00370 LRR Leucine-rich re 93.2 0.097 2.1E-06 25.5 2.2 21 125-146 2-22 (26)
81 smart00370 LRR Leucine-rich re 91.9 0.16 3.4E-06 24.7 1.9 18 246-263 2-19 (26)
82 smart00369 LRR_TYP Leucine-ric 91.9 0.16 3.4E-06 24.7 1.9 18 246-263 2-19 (26)
83 KOG0473 Leucine-rich repeat pr 86.8 0.0073 1.6E-07 47.0 -7.7 85 51-138 40-124 (326)
84 KOG4341 F-box protein containi 86.4 0.3 6.4E-06 41.6 0.8 131 145-275 315-457 (483)
85 KOG0473 Leucine-rich repeat pr 84.8 0.017 3.7E-07 45.1 -6.6 83 149-234 41-123 (326)
86 smart00365 LRR_SD22 Leucine-ri 80.3 1.6 3.6E-05 21.3 1.7 15 246-260 2-16 (26)
87 smart00368 LRR_RI Leucine rich 79.3 1.4 3E-05 21.9 1.3 15 246-260 2-16 (28)
88 smart00367 LRR_CC Leucine-rich 73.1 2.5 5.5E-05 20.4 1.3 16 245-260 1-17 (26)
89 smart00364 LRR_BAC Leucine-ric 67.4 3.9 8.6E-05 20.0 1.2 16 126-142 3-18 (26)
90 KOG3763 mRNA export factor TAP 65.9 3.3 7.2E-05 36.8 1.3 65 75-139 216-284 (585)
91 KOG3763 mRNA export factor TAP 58.3 5.4 0.00012 35.5 1.3 11 198-208 244-254 (585)
92 TIGR00864 PCC polycystin catio 28.0 40 0.00087 36.6 2.1 32 107-138 1-32 (2740)
93 TIGR00864 PCC polycystin catio 20.1 69 0.0015 35.0 2.0 32 180-211 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-33 Score=267.53 Aligned_cols=263 Identities=41% Similarity=0.717 Sum_probs=166.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCccccCCCCCCCCCcccceeeeCCCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCC
Q 044860 8 ITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFN 87 (279)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 87 (279)
..+|..+|++||..+. +|..+.. +|+...++|.|.|+.|... .+++.|+++++.+.+..+..+..+++|+.|++++|
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~-~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLS-NWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCC-CCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 4578999999999996 7777777 9988889999999999854 48999999999999888888999999999999999
Q ss_pred cccccCCcccc-CCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccC
Q 044860 88 QLSGSIPSAIF-TTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGI 166 (279)
Q Consensus 88 ~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 166 (279)
.+.+.+|..+. .+.+|++|++++|.+++..|. ..+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+..
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccC
Confidence 98877776655 777777777777776655443 234555555555555554444444 45555555555555554445
Q ss_pred CccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCC
Q 044860 167 PSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLS 246 (279)
Q Consensus 167 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 246 (279)
|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 55555555555555555554444444444445555555555544444444444444444444444444444444444444
Q ss_pred CCCEEEccCcccccccchhhhcccccceee
Q 044860 247 RLEILQLSDNFLTGIISSSIFKLLLSIEFE 276 (279)
Q Consensus 247 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 276 (279)
+|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 444444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5e-28 Score=228.89 Aligned_cols=225 Identities=37% Similarity=0.521 Sum_probs=156.8
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.+++++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 34666666666666666666677777777777777777666777777777777777777777766777777777777777
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|.+.+.+|..+ .++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 77777766666655 66777777777777776666666777777777777777766666666666677777777777766
Q ss_pred ccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeee
Q 044860 212 GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 363 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL 363 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence 666666666667777777777666666666666666777777666666666666666666666665
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-25 Score=188.00 Aligned_cols=225 Identities=24% Similarity=0.207 Sum_probs=184.2
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
.+++.|+|.+|.+.......++.++.|++||++.|.+....-.+|..-.++++|+|+.|+|+......|..+.+|..|.+
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 36777777777777666667777888888888888887444446667788999999999998777888888889999999
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
+.|+++ .+|...|.++++|+.|++..|.+...-...|.++++|+.|.+..|.+.......|..+.++++|+|+.|.++.
T Consensus 205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 999998 8999999999999999999998874445677888888888888888877777778888888888888888876
Q ss_pred cCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 213 EIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
.-..++.++..|+.|+++.|.|...-++.++-+++|+.|+|++|+++...+.+|..+..|+.|+++
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS 349 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence 666677888888888888888887777777888888888888888888778888888888888764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-25 Score=188.63 Aligned_cols=228 Identities=23% Similarity=0.191 Sum_probs=157.5
Q ss_pred CCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcE
Q 044860 50 VHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQH 129 (279)
Q Consensus 50 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (279)
....++++|+|++|.++......|..+.+|.+|.++.|+++...+..|..+++|+.|+|..|.+.....-.|.++++|+.
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 34458888999999888777788888888899999999888444455666888888888888876443455666777777
Q ss_pred EEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcc
Q 044860 130 LDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNG 209 (279)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 209 (279)
|.+..|.+. .+..+.|..+.++++|++..|.+.......+.++++|+.|++++|.+....++.+.-+++|++|+|+.|.
T Consensus 250 lklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 250 LKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 777777766 6666666666666666666666665555555556666666666666655555555555556666665555
Q ss_pred ccccCc------------------------hhccCCCCCCEEeccCCcccccCC---ccccCCCCCCEEEccCccccccc
Q 044860 210 LLGEIP------------------------REFGNLAELELMSLPANKLQGEIP---QELGNLSRLEILQLSDNFLTGII 262 (279)
Q Consensus 210 l~~~~~------------------------~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~~n~l~~~~ 262 (279)
++...+ ..|..+++|++|+|.+|.+...+. ..+.++++|+.|++.||++..+.
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 554333 344455666777777776654332 34567888888888888888777
Q ss_pred chhhhcccccceeeec
Q 044860 263 SSSIFKLLLSIEFEIF 278 (279)
Q Consensus 263 ~~~~~~l~~L~~l~l~ 278 (279)
...|..+..|++|++.
T Consensus 409 krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLG 424 (873)
T ss_pred hhhhccCcccceecCC
Confidence 7788888888888864
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=3.1e-24 Score=182.43 Aligned_cols=218 Identities=28% Similarity=0.423 Sum_probs=172.7
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccc-cCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSG-SIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.+++.|++.+|++.. +-..++.++.|+.+.+..|++.. -+|..++.+..|..|+|++|.+. ..|..+..-+++-.|+
T Consensus 55 qkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 466777777777663 33446677777888777777653 46777888888888888888887 7888888888888888
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccccccc------------------------
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW------------------------ 187 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~------------------------ 187 (279)
+++|+|. .+|..+|.++..|-.|++++|.+. .+|..+..+..|++|.+++|.+.
T Consensus 133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred cccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 8888887 888888888888888999888887 66777888888888888888641
Q ss_pred -ccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhh
Q 044860 188 -GAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSI 266 (279)
Q Consensus 188 -~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 266 (279)
..+|.++..+.+|..++++.|++. .+|+.+..+++|+.|+|++|.++ .+.-......+|+.|+++.|+++ .+|..+
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 244556666778888999999987 88899999999999999999997 44445567788899999999988 688888
Q ss_pred hcccccceeee
Q 044860 267 FKLLLSIEFEI 277 (279)
Q Consensus 267 ~~l~~L~~l~l 277 (279)
+++++|++|.+
T Consensus 288 cKL~kL~kLy~ 298 (1255)
T KOG0444|consen 288 CKLTKLTKLYA 298 (1255)
T ss_pred hhhHHHHHHHh
Confidence 99988887753
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=5.7e-22 Score=168.78 Aligned_cols=220 Identities=27% Similarity=0.358 Sum_probs=181.3
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCC-CCCccccCCCCCcEEE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSG-AFPSFIFNKSSLQHLD 131 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~ 131 (279)
.++++|.+....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+.+++|++.. -+|+.+.++..|..|+
T Consensus 32 t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 47888999888887 78888999999999999999887 555667889999999999998863 5788889999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|+++ ..|..+ ..-+++.+|+++.|.|....-..+.++..|-.||+++|++ +.+|+.+..+..|++|.+++|.+.
T Consensus 110 LShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhcCCChhh
Confidence 9999998 899888 7788999999999999855445667888999999999999 788888899999999999999875
Q ss_pred ccCchhccCCCCCCEEeccCCccc-ccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 212 GEIPREFGNLAELELMSLPANKLQ-GEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
..-...+..+.+|++|.+++.+-+ ..+|..+..+.+|..+|++.|++. .+|+++.++++|+.|+++
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccC
Confidence 433344556677788888777543 246777888888888888888887 678888888888888775
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.9e-21 Score=157.26 Aligned_cols=103 Identities=25% Similarity=0.408 Sum_probs=73.3
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCcccc-CCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIF-TTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
++..++++.|.+. .+| .|.++..|+++.++.|.+. .+|+... .++++..|++++|+++ ..|+.+..+.+|++|++
T Consensus 207 ~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 207 SLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDL 282 (565)
T ss_pred hhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcc
Confidence 3344455555554 344 3555555555555555554 4454444 6788889999999988 88888888889999999
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceec
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFH 163 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (279)
++|.++ .+|..+ +++ +|+.|.+.+|.+.
T Consensus 283 SNN~is-~Lp~sL-gnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 283 SNNDIS-SLPYSL-GNL-HLKFLALEGNPLR 310 (565)
T ss_pred cCCccc-cCCccc-ccc-eeeehhhcCCchH
Confidence 999988 788887 777 8888888888754
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=3.7e-20 Score=149.48 Aligned_cols=226 Identities=24% Similarity=0.242 Sum_probs=150.3
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeec-ccCCCCCCccccCCCCCcE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCR-NQLSGAFPSFIFNKSSLQH 129 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~ 129 (279)
-++..+.|+|..|.|+...+.+|+.+++|+.|++++|.+..+.|+.|..+..+..|.+.+ |+|+..--..|.++.+++.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 346888999999999988888999999999999999999988899999999988887777 7887443345556666666
Q ss_pred EEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccccc------------------------
Q 044860 130 LDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLND------------------------ 185 (279)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~------------------------ 185 (279)
|.+.-|++. -+....|..++++..|.+.+|.+....--.+..+..++++.+..|.
T Consensus 145 LllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 666555555 4444444555555555555554431111123232222222222221
Q ss_pred -------------------------------------ccccCc-hhhcCCCCCcEEEccCccccccCchhccCCCCCCEE
Q 044860 186 -------------------------------------FWGAIP-KEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELM 227 (279)
Q Consensus 186 -------------------------------------~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 227 (279)
.....| ..|..+++|+.|++++|.+++.-+.+|.....+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 001111 224556777777777777777767777777777777
Q ss_pred eccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeee
Q 044860 228 SLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 228 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
.|.+|++...-...|.++..|+.|+|.+|+++..-|..|..+.+|..|++
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 77777776555556777777777777777777777777777777766654
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=3e-17 Score=156.99 Aligned_cols=217 Identities=25% Similarity=0.267 Sum_probs=116.2
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
.+++.|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++.+|.....+|..+..+++|++|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 46666777766665 4555566677777777776654434553 566677777777776555566666667777777777
Q ss_pred cCCccccccChhhhcCCCCCcEEecccc---------------------eecccCCccc---------------------
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQN---------------------MFHGGIPSTL--------------------- 170 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~---------------------~~~~~~~~~l--------------------- 170 (279)
++|.....+|..+ ++++|+.|++.+| .+. .+|..+
T Consensus 689 ~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 689 SRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhcccc
Confidence 7654333555433 3444555544443 322 112111
Q ss_pred ---------cCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccC----------
Q 044860 171 ---------SNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPA---------- 231 (279)
Q Consensus 171 ---------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~---------- 231 (279)
...++|+.|++++|.....+|..+.++++|+.|++++|...+.+|... .+++|+.|++++
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 012355566666665555566666677777777777664333444332 334444444444
Q ss_pred -----------CcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceee
Q 044860 232 -----------NKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFE 276 (279)
Q Consensus 232 -----------n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 276 (279)
|.++ .+|.++..+++|+.|++++|+--..+|..+..+++|+.++
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD 899 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee
Confidence 4343 3444445555555555555422222333444444444444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=1.2e-21 Score=158.46 Aligned_cols=215 Identities=30% Similarity=0.414 Sum_probs=153.6
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
..-++++.+.++++. .+|.+++++..++.+++++|++. .+|..+..+..+..++++.|.+. .+++.++.+..++.++
T Consensus 67 L~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLD 143 (565)
T ss_pred ccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhh
Confidence 346788899999888 67888889999999999999987 88888999999999999999888 7888888888888888
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCC------------
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTK------------ 199 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~------------ 199 (279)
..+|+++ .+|..+ .++.++..+++.+|.+... |...-.++.|++++...|-+ +..|..++.+.+
T Consensus 144 ~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 144 ATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred ccccccc-cCchHH-HHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc
Confidence 8888887 777776 5566677777777766633 22233355555555555544 444444444444
Q ss_pred ----------CcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcc
Q 044860 200 ----------LKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKL 269 (279)
Q Consensus 200 ----------L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 269 (279)
|.+++++.|.+.-...+...+++++.+||+.+|+++ +.|..+.-+.+|+.||+++|.+++ +|.+++.+
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl 297 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL 297 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc
Confidence 444445444444222233446777888888888886 677777777888888888888874 55567777
Q ss_pred cccceee
Q 044860 270 LLSIEFE 276 (279)
Q Consensus 270 ~~L~~l~ 276 (279)
+|++|.
T Consensus 298 -hL~~L~ 303 (565)
T KOG0472|consen 298 -HLKFLA 303 (565)
T ss_pred -eeeehh
Confidence 677664
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=1e-20 Score=136.51 Aligned_cols=181 Identities=31% Similarity=0.535 Sum_probs=135.1
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCC
Q 044860 73 LGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (279)
+.++.+++.|.+++|+++ .+|..+..+.+|+.|++.+|.++ .+|..++.+++|+.|+++.|.+. .+|.++ +.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchh
Confidence 456777888888888887 77778888888888888888887 78888888888888888888876 666666 778888
Q ss_pred cEEecccceecc-cCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccC
Q 044860 153 EYISLSQNMFHG-GIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPA 231 (279)
Q Consensus 153 ~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 231 (279)
+.|++..|.+.. .+|..|..+..|+.|.+++|.+ +.+|..++.+++|+.|.+..|.+- .+|..++.+..|++|++.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 888888777643 5677777777788888888877 777777788888888888888776 6677777788888888888
Q ss_pred CcccccCCccccCCC---CCCEEEccCccccc
Q 044860 232 NKLQGEIPQELGNLS---RLEILQLSDNFLTG 260 (279)
Q Consensus 232 n~l~~~~~~~l~~~~---~L~~L~l~~n~l~~ 260 (279)
|+++ .+|..++++. +-..+.+..|+...
T Consensus 183 nrl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 183 NRLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ceee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 8886 5555554432 12334555555443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=2.4e-17 Score=157.61 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=129.1
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.++++++...+.+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .+++|++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 45777888877654445553 6677778888887776555677777777777777777764443455433 344444444
Q ss_pred ccCC---------------------ccccccChhh-----------------------------hcCCCCCcEEecccce
Q 044860 132 FSFN---------------------TLSGEIPANI-----------------------------CSNLPFLEYISLSQNM 161 (279)
Q Consensus 132 l~~~---------------------~~~~~~~~~~-----------------------------~~~l~~L~~L~l~~~~ 161 (279)
+++| .+. .+|..+ +...++|+.|++++|.
T Consensus 711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~ 789 (1153)
T PLN03210 711 LSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP 789 (1153)
T ss_pred CCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence 4443 332 233211 0112356666666665
Q ss_pred ecccCCccccCCCCCcEEEcccccccccCchhhcCC---------------------CCCcEEEccCccccccCchhccC
Q 044860 162 FHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNL---------------------TKLKELYLGRNGLLGEIPREFGN 220 (279)
Q Consensus 162 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~---------------------~~L~~L~l~~n~l~~~~~~~l~~ 220 (279)
....+|..+.++++|+.|++++|...+.+|..+ .+ .+|+.|++++|.++ .+|..+..
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~ 867 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEK 867 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCc-cChHHHhc
Confidence 555667777777777777777765434444332 22 34566666666665 56778888
Q ss_pred CCCCCEEeccCCcccccCCccccCCCCCCEEEccCcc
Q 044860 221 LAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNF 257 (279)
Q Consensus 221 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 257 (279)
+++|+.|++.+|.--..+|..+..+++|+.+++++|.
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999999999964434677778889999999999994
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=6.3e-20 Score=162.01 Aligned_cols=219 Identities=27% Similarity=0.377 Sum_probs=150.2
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
.++++++++.+++. .+|+.+..+.+|+.++..+|.+. .+|..+....+|+.|.+..|.+. .+|+...+...|++|++
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 35555555555555 33455555555555555555554 45555555555555555555554 55666666777777777
Q ss_pred cCCccccccChhhhc-------------------------CCCCCcEEecccceecccCCccccCCCCCcEEEccccccc
Q 044860 133 SFNTLSGEIPANICS-------------------------NLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW 187 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~-------------------------~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (279)
..|.+. .+|...+. .++.|+.|++.+|.+++.....+.+.+.|+.|++++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 777776 55543321 1223555666666666666666778889999999999885
Q ss_pred ccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhh
Q 044860 188 GAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIF 267 (279)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (279)
......+.++..|++|+++||.++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++...-+..-
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 555566778888999999999998 77788888899999999999887 667 688899999999999999865433333
Q ss_pred cccccceeeec
Q 044860 268 KLLLSIEFEIF 278 (279)
Q Consensus 268 ~l~~L~~l~l~ 278 (279)
.-++|++|+++
T Consensus 474 p~p~LkyLdlS 484 (1081)
T KOG0618|consen 474 PSPNLKYLDLS 484 (1081)
T ss_pred CCcccceeecc
Confidence 33889999875
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=5.7e-20 Score=132.70 Aligned_cols=162 Identities=33% Similarity=0.501 Sum_probs=129.0
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
..+++.|.+++|.++ .+|+.++++.+|+.|++.+|++. .+|.+++.+++|+.|++..|++. .+|..|+.++.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 447788888888888 56667888888888888888887 78888888888888888888877 8888888888888888
Q ss_pred ccCCccccc-cChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 132 FSFNTLSGE-IPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 132 l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
+.+|.+... +|..+ -.+..|+-|++++|.+. .+|..++.+++|+.|.+.+|.+ -.+|..++.+..|++|.+++|.+
T Consensus 109 ltynnl~e~~lpgnf-f~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNF-FYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcch-hHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhccccee
Confidence 888877643 44444 45778888888888877 6777788888888888888877 56677888888888888888888
Q ss_pred cccCchhccC
Q 044860 211 LGEIPREFGN 220 (279)
Q Consensus 211 ~~~~~~~l~~ 220 (279)
+ .+|+.++.
T Consensus 186 ~-vlppel~~ 194 (264)
T KOG0617|consen 186 T-VLPPELAN 194 (264)
T ss_pred e-ecChhhhh
Confidence 7 55554443
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=1.7e-19 Score=145.68 Aligned_cols=208 Identities=25% Similarity=0.231 Sum_probs=178.3
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccC-CcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSF-NQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQH 129 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (279)
..++++.|+|++|+|+.+-|++|.+++.+.+|.+.+ |++++.....|..+..++.|.+..|.+.-...+.+..++++..
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 447999999999999999999999999999988877 8888555567888999999999988888777788888999999
Q ss_pred EEccCCccccccChhhhcCCCCCcEEecccceec----------------------------------------------
Q 044860 130 LDFSFNTLSGEIPANICSNLPFLEYISLSQNMFH---------------------------------------------- 163 (279)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------------------------------------------- 163 (279)
|.+.+|.+. .++...|..+..++.+++..|...
T Consensus 169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~ 247 (498)
T KOG4237|consen 169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS 247 (498)
T ss_pred hcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh
Confidence 999999887 777777788888888887666521
Q ss_pred ---------------cc-CCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEE
Q 044860 164 ---------------GG-IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELM 227 (279)
Q Consensus 164 ---------------~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 227 (279)
.. ....|..+++|+++++++|.++++.+.+|.....+++|.+..|++.......|..+..|++|
T Consensus 248 ~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 248 LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTL 327 (498)
T ss_pred HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceee
Confidence 00 11245668899999999999999999999999999999999999986666789999999999
Q ss_pred eccCCcccccCCccccCCCCCCEEEccCcccc
Q 044860 228 SLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 228 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
+|.+|+|+...|..|..+..|..|.+-.|++.
T Consensus 328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999888999999999999999988875
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=4.1e-18 Score=142.09 Aligned_cols=226 Identities=19% Similarity=0.172 Sum_probs=140.2
Q ss_pred CCceEEEEecCCCccc------ccCCccCCCCCCCEEEccCCcccccCCccccCCCC---CcEEEeecccCCC----CCC
Q 044860 52 SHKVAVLNVSGLNLTG------TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYT---LKYVSFCRNQLSG----AFP 118 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~ 118 (279)
.+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+.+ .+.
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 3457778877776551 23345666778888888888776544444444444 8888888887763 223
Q ss_pred ccccCC-CCCcEEEccCCccccccCh---hhhcCCCCCcEEecccceeccc----CCccccCCCCCcEEEccccccccc-
Q 044860 119 SFIFNK-SSLQHLDFSFNTLSGEIPA---NICSNLPFLEYISLSQNMFHGG----IPSTLSNCTYLQKLSLSLNDFWGA- 189 (279)
Q Consensus 119 ~~l~~l-~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~- 189 (279)
..+..+ ++|++|++++|.+++.... ..+..+++|++|++.+|.+.+. ++..+...++|+.|++++|.+.+.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 344555 7788888888877632111 1235567788888888777531 223344556888888888876432
Q ss_pred ---CchhhcCCCCCcEEEccCccccccCchhcc-----CCCCCCEEeccCCcccc----cCCccccCCCCCCEEEccCcc
Q 044860 190 ---IPKEIGNLTKLKELYLGRNGLLGEIPREFG-----NLAELELMSLPANKLQG----EIPQELGNLSRLEILQLSDNF 257 (279)
Q Consensus 190 ---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~ 257 (279)
....+..+++|+.|++++|.+++.....+. ..+.|++|++++|.++. .+...+..+++|+.+++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 233445667788888888877653222221 23678888888887752 223345556788888888888
Q ss_pred cccc----cchhhhcc-cccceeee
Q 044860 258 LTGI----ISSSIFKL-LLSIEFEI 277 (279)
Q Consensus 258 l~~~----~~~~~~~l-~~L~~l~l 277 (279)
+... ....+-.. +.|+++++
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 290 FGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred CcHHHHHHHHHHHhhcCCchhhccc
Confidence 8744 34444444 55666654
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=4.6e-18 Score=141.79 Aligned_cols=224 Identities=25% Similarity=0.288 Sum_probs=159.3
Q ss_pred ceEEEEecCCCccc----ccCCccCCCCCCCEEEccCCcccc------cCCccccCCCCCcEEEeecccCCCCCCccccC
Q 044860 54 KVAVLNVSGLNLTG----TIPSQLGNLSSLQSLDLSFNQLSG------SIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFN 123 (279)
Q Consensus 54 ~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 123 (279)
.++.++++++.+.+ .++..+...+.++.++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 58899999998853 245556677889999999887652 23345667889999999999887555555554
Q ss_pred CCC---CcEEEccCCcccc----ccChhhhcCC-CCCcEEecccceecc----cCCccccCCCCCcEEEccccccccc--
Q 044860 124 KSS---LQHLDFSFNTLSG----EIPANICSNL-PFLEYISLSQNMFHG----GIPSTLSNCTYLQKLSLSLNDFWGA-- 189 (279)
Q Consensus 124 l~~---L~~L~l~~~~~~~----~~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~-- 189 (279)
+.+ |++|++++|.+.+ .+...+ ..+ ++|+.|++.+|.+.+ .....+..+++|++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 444 9999999998763 122223 455 889999999998863 2334556677899999999988632
Q ss_pred --CchhhcCCCCCcEEEccCcccccc----CchhccCCCCCCEEeccCCcccccCCccc-----cCCCCCCEEEccCccc
Q 044860 190 --IPKEIGNLTKLKELYLGRNGLLGE----IPREFGNLAELELMSLPANKLQGEIPQEL-----GNLSRLEILQLSDNFL 258 (279)
Q Consensus 190 --~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l 258 (279)
.+..+...++|+.|++++|.+.+. +...+..+++|++|++++|.+++.....+ ...+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 233445567899999999988643 33456677899999999998875222221 1347899999999988
Q ss_pred c----cccchhhhcccccceeeec
Q 044860 259 T----GIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 259 ~----~~~~~~~~~l~~L~~l~l~ 278 (279)
+ ..+...+..+++|++++++
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLR 286 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECC
Confidence 7 2344566777888888874
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.8e-16 Score=143.34 Aligned_cols=97 Identities=28% Similarity=0.453 Sum_probs=49.7
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
.++.|++++|.+. .+|..+. .+|++|++++|.+. .+|..+. ..|+.|++++|.+. .+|..+. .+|++|+++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 4566666666665 3343332 35666666666555 3443332 24555555555555 3444332 345566666
Q ss_pred CCccccccChhhhcCCCCCcEEecccceec
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFH 163 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (279)
+|++. .+|..++ ++|+.|++++|.+.
T Consensus 271 ~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 271 HNKIS-CLPENLP---EELRYLSVYDNSIR 296 (754)
T ss_pred CCccC-ccccccC---CCCcEEECCCCccc
Confidence 55555 4444331 34555555555554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=1.9e-15 Score=136.41 Aligned_cols=196 Identities=29% Similarity=0.329 Sum_probs=88.4
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCcccc-----------------CCCCCcEEEeecccCCCC
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIF-----------------TTYTLKYVSFCRNQLSGA 116 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------~l~~L~~L~l~~~~~~~~ 116 (279)
+++.|++.+|+++ .+|. ..++|++|++++|.++ .+|.... ....|+.|++++|.++ .
T Consensus 223 ~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~ 296 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-S 296 (788)
T ss_pred CCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-c
Confidence 5666666666666 2343 1356666666666665 3332110 0123444445555444 2
Q ss_pred CCccccCCCCCcEEEccCCccccccChhhhcC-----------------CCCCcEEecccceecccCCccccCCCCCcEE
Q 044860 117 FPSFIFNKSSLQHLDFSFNTLSGEIPANICSN-----------------LPFLEYISLSQNMFHGGIPSTLSNCTYLQKL 179 (279)
Q Consensus 117 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-----------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 179 (279)
+|. ..++|++|++++|++. .+|... .. ..+|+.|++++|.+. .+|.. ..+|+.|
T Consensus 297 LP~---~p~~L~~LdLS~N~L~-~Lp~lp-~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L 367 (788)
T PRK15387 297 LPV---LPPGLQELSVSDNQLA-SLPALP-SELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL---PSELYKL 367 (788)
T ss_pred ccc---cccccceeECCCCccc-cCCCCc-ccccccccccCccccccccccccceEecCCCccC-CCCCC---Cccccee
Confidence 332 1356777777777666 333211 00 013444444444444 22211 1223333
Q ss_pred EcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccc
Q 044860 180 SLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 180 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
++++|.+. .+|.. ..+|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|.++
T Consensus 368 ~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt 435 (788)
T PRK15387 368 WAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT 435 (788)
T ss_pred hhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc
Confidence 33333331 12211 1245555555555542 2321 234555555555554 23322 124455555555555
Q ss_pred cccchhhhcccccceeee
Q 044860 260 GIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 260 ~~~~~~~~~l~~L~~l~l 277 (279)
.+|..++++++|+.|++
T Consensus 436 -~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 436 -RLPESLIHLSSETTVNL 452 (788)
T ss_pred -ccChHHhhccCCCeEEC
Confidence 34555555666655554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=1.4e-15 Score=137.74 Aligned_cols=184 Identities=27% Similarity=0.426 Sum_probs=128.7
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
+.+.|++.++.++ .+|..+. ++++.|++++|.+. .+|..+. .+|++|++++|.++ .+|..+ ..+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECc
Confidence 5678999998888 4666554 58999999999998 6676554 58999999999988 566655 3579999999
Q ss_pred CCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhc------------------
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIG------------------ 195 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~------------------ 195 (279)
+|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+.. +|..+.
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCc
Confidence 99998 8888763 57999999999998 5666553 589999999998843 333221
Q ss_pred -CCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 196 -NLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 196 -~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
-.++|+.|++++|.+++ +|..+ .++|+.|++++|++. .+|..+ .++|+.|++++|.+++
T Consensus 322 ~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 322 TLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred cccccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCC
Confidence 01345555555555542 33332 246666666666665 344433 2466777777776664
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=6.8e-18 Score=149.37 Aligned_cols=219 Identities=28% Similarity=0.302 Sum_probs=174.6
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
.+++++.|..++|.+....+. .--.+|+++++++|++. .+|..+..+.+|+.+...+|.+. .+|..+....+|+.+
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 456778888888877733332 22367999999999988 67788999999999999999996 888889999999999
Q ss_pred EccCCccccccChhhhcCCCCCcEEecccceecccCCccc-c-------------------------CCCCCcEEEcccc
Q 044860 131 DFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTL-S-------------------------NCTYLQKLSLSLN 184 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~-------------------------~~~~L~~L~l~~n 184 (279)
...+|.+. .+|+.. .+++.|++|++..|.+.. +|+.+ . ..+.|+.|.+.+|
T Consensus 293 ~~~~nel~-yip~~l-e~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN 369 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFL-EGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN 369 (1081)
T ss_pred Hhhhhhhh-hCCCcc-cccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC
Confidence 99999998 888877 779999999999998863 33211 1 1235666777788
Q ss_pred cccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccch
Q 044860 185 DFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISS 264 (279)
Q Consensus 185 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 264 (279)
.+++..-..+.+..+|+.|+|++|.+.......+.+++.|++|+++||+++ .+|..+..++.|+.|...+|++. ..|
T Consensus 370 ~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP- 446 (1081)
T KOG0618|consen 370 HLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP- 446 (1081)
T ss_pred cccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-
Confidence 887777677788888999999999887554456788888999999999987 67788888999999998888887 455
Q ss_pred hhhcccccceeeecC
Q 044860 265 SIFKLLLSIEFEIFI 279 (279)
Q Consensus 265 ~~~~l~~L~~l~l~~ 279 (279)
.+.++++|+.+++++
T Consensus 447 e~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSC 461 (1081)
T ss_pred hhhhcCcceEEeccc
Confidence 688999999998874
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=3e-15 Score=135.06 Aligned_cols=192 Identities=29% Similarity=0.318 Sum_probs=137.3
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEE--------------------EccCCcccccCCccccCCCCCcEEEeecc
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSL--------------------DLSFNQLSGSIPSAIFTTYTLKYVSFCRN 111 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L--------------------~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 111 (279)
.+++++|++++|+++. +|..+ ++|+.| ++++|++. .+|. ..++|+.|++++|
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~lp---~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N 312 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVLP---PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDN 312 (788)
T ss_pred CCCCcEEEecCCccCc-ccCcc---cccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCC
Confidence 4688899999998873 44322 344444 44444443 2332 2357888888888
Q ss_pred cCCCC--CCccccC--------------CCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCC
Q 044860 112 QLSGA--FPSFIFN--------------KSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTY 175 (279)
Q Consensus 112 ~~~~~--~~~~l~~--------------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 175 (279)
.+++. .|..+.. ..+|++|++++|+++ .+|.. ..+|+.|++.+|.+. .+|.. ..+
T Consensus 313 ~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~ 383 (788)
T PRK15387 313 QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSG 383 (788)
T ss_pred ccccCCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccc
Confidence 77642 1111111 137899999999998 66652 357888999999987 45643 357
Q ss_pred CcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccC
Q 044860 176 LQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSD 255 (279)
Q Consensus 176 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 255 (279)
|+.|++++|.+. ..|.. .++|+.|++++|.+++ +|.. +.+|+.|++++|+++ .+|..+..+++|+.|++++
T Consensus 384 L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 384 LKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 999999999985 44543 3679999999999984 5543 357889999999998 7888899999999999999
Q ss_pred cccccccchhhhcc
Q 044860 256 NFLTGIISSSIFKL 269 (279)
Q Consensus 256 n~l~~~~~~~~~~l 269 (279)
|++++..+..+..+
T Consensus 455 N~Ls~~~~~~L~~l 468 (788)
T PRK15387 455 NPLSERTLQALREI 468 (788)
T ss_pred CCCCchHHHHHHHH
Confidence 99999888776443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=7.1e-15 Score=132.12 Aligned_cols=153 Identities=28% Similarity=0.484 Sum_probs=129.4
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCccccCCCCCCCCCc-----ccceeeeCCCC----CceEEEEecCCCcccccCCccCC
Q 044860 5 TGTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVC-----NWTGVTCDVHS----HKVAVLNVSGLNLTGTIPSQLGN 75 (279)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~----~~l~~l~l~~~~~~~~~~~~~~~ 75 (279)
.++..+|..+|+++|..+. ++.. . +|.. ++| .|.|+.|.... ..++.|+|+++.+.+.+|..+..
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~~--~-~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~ 440 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPLR--F-GWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK 440 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Cccc--C-CCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhC
Confidence 3456689999999999986 3321 2 7854 345 69999996322 25899999999999999999999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEE
Q 044860 76 LSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYI 155 (279)
Q Consensus 76 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 155 (279)
+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|++|++++|.+.+.+|..+.....++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998874444577788
Q ss_pred ecccceec
Q 044860 156 SLSQNMFH 163 (279)
Q Consensus 156 ~l~~~~~~ 163 (279)
++.+|...
T Consensus 521 ~~~~N~~l 528 (623)
T PLN03150 521 NFTDNAGL 528 (623)
T ss_pred EecCCccc
Confidence 88877643
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.38 E-value=6.2e-13 Score=114.19 Aligned_cols=198 Identities=34% Similarity=0.484 Sum_probs=151.9
Q ss_pred EEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCC-CCcEEEeecccCCCCCCccccCCCCCcEEEccCC
Q 044860 57 VLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTY-TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFN 135 (279)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (279)
.++...+.+.. ....+..++.++.|++.+|.+. .++....... +|+.|++++|.+. .++..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 35555555531 2233555678899999999888 6676677774 8999999999887 66667888999999999999
Q ss_pred ccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCc
Q 044860 136 TLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIP 215 (279)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 215 (279)
++. .++... ...++|+.|++++|.+. .+|........|+++.+++|.. ...+..+..+.++..+.+.+|.+. ..+
T Consensus 174 ~l~-~l~~~~-~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLL-SNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhh-hhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCceee-ecc
Confidence 998 777765 47889999999999987 5565555666789999998864 344556677888888888888876 336
Q ss_pred hhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccch
Q 044860 216 REFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISS 264 (279)
Q Consensus 216 ~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 264 (279)
..+..++.+++|++++|.++ .++. +....+++.+++++|.+...++.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 67778888999999999997 4444 78889999999999988766554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=1.6e-14 Score=122.20 Aligned_cols=170 Identities=29% Similarity=0.450 Sum_probs=98.6
Q ss_pred EEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCC
Q 044860 56 AVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFN 135 (279)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (279)
+..+++.|.+. .+|..+..|..|+.+.++.|.+. .+|..+..+..|.+++|+.|.+. .+|..+..++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34455555555 45555555566666666666555 55555666666666666666655 5555555444 566666666
Q ss_pred ccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCc
Q 044860 136 TLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIP 215 (279)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 215 (279)
+++ .+|..+ +..+.|..|+.+.|.+. .+|..+.++.+|+.+.+..|.+ ..+|..+..++ |..|+++.|++. .+|
T Consensus 154 kl~-~lp~~i-g~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l-~~lp~El~~Lp-Li~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEI-GLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHL-EDLPEELCSLP-LIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCccc-ccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhh-hhCCHHHhCCc-eeeeecccCcee-ecc
Confidence 665 566655 35555666666666655 4555556666666666666655 34444444333 666666666665 455
Q ss_pred hhccCCCCCCEEeccCCccc
Q 044860 216 REFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 216 ~~l~~~~~L~~L~l~~n~l~ 235 (279)
-.|.++.+|++|-|.+|.++
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 55666666666666666654
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.32 E-value=3.3e-13 Score=106.30 Aligned_cols=201 Identities=24% Similarity=0.266 Sum_probs=146.7
Q ss_pred ceEEEEecCCC--------cccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCC---CCCc---
Q 044860 54 KVAVLNVSGLN--------LTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSG---AFPS--- 119 (279)
Q Consensus 54 ~l~~l~l~~~~--------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~--- 119 (279)
++..|..++.. +...+|-.+.-+++|+.+.++.+.-. .+-.....-|.|+++......+.. .+|.
T Consensus 183 ~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~ 261 (490)
T KOG1259|consen 183 QLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDVPSLLPETIL 261 (490)
T ss_pred heeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccccccccchhhh
Confidence 66666665432 22345555667889999999998644 222223345677887777653321 1111
Q ss_pred -----------------cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcc
Q 044860 120 -----------------FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLS 182 (279)
Q Consensus 120 -----------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 182 (279)
.+.....|+++++++|.++ .+...+ .-.|.++.|+++.|.+.. ...+..+++|..||++
T Consensus 262 ~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS 337 (490)
T KOG1259|consen 262 ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLS 337 (490)
T ss_pred cCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhh-hhccceeEEeccccceee--ehhhhhcccceEeecc
Confidence 1122356899999999998 888887 778999999999999963 2448889999999999
Q ss_pred cccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccccc-CCccccCCCCCCEEEccCcccccc
Q 044860 183 LNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGE-IPQELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 183 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~ 261 (279)
+|.+ .....+-..+.+++.|.+++|.+.+. ..+..+-+|..|++.+|++... ....++++|.|+++.+.+|++.+.
T Consensus 338 ~N~L-s~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 338 GNLL-AECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cchh-HhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9988 44555656788999999999998643 5677889999999999999742 234578999999999999999854
Q ss_pred c
Q 044860 262 I 262 (279)
Q Consensus 262 ~ 262 (279)
+
T Consensus 415 v 415 (490)
T KOG1259|consen 415 V 415 (490)
T ss_pred c
Confidence 3
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=5.2e-12 Score=94.50 Aligned_cols=123 Identities=25% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCCCcEEecccceecccCCcccc-CCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhc-cCCCCCCE
Q 044860 149 LPFLEYISLSQNMFHGGIPSTLS-NCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF-GNLAELEL 226 (279)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~ 226 (279)
..++++|++.+|.++. + +.+. .+.+|+.|++++|.+... . .+..+++|+.|++++|.+++. ...+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 3345555555555542 1 2233 345555555555555322 1 244455566666666666532 2222 23556666
Q ss_pred EeccCCccccc-CCccccCCCCCCEEEccCcccccccc---hhhhcccccceee
Q 044860 227 MSLPANKLQGE-IPQELGNLSRLEILQLSDNFLTGIIS---SSIFKLLLSIEFE 276 (279)
Q Consensus 227 L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~ 276 (279)
|++++|++... .-..+..+++|+.|++.+|+++...- ..+..+|+|+.|+
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66666665431 11334556666666666666654321 2345666666554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=9.2e-14 Score=117.74 Aligned_cols=177 Identities=29% Similarity=0.499 Sum_probs=155.1
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEE
Q 044860 76 LSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYI 155 (279)
Q Consensus 76 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 155 (279)
+..-...+++.|++. ++|..+..+-.|+.+.++.|.+. .+|..+..+..|.+++++.|++. .+|..+| .++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeE
Confidence 444566788999987 88988888889999999999887 88999999999999999999998 8999883 454 8999
Q ss_pred ecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccc
Q 044860 156 SLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 156 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
.+++|+++ .+|+.++....|..++.+.|.+ ..+|+.+.++.+|+.|.+..|.+. .+|+.+.. -.|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee
Confidence 99999998 7888899889999999999999 777888899999999999999987 66777764 46899999999998
Q ss_pred ccCCccccCCCCCCEEEccCccccccc
Q 044860 236 GEIPQELGNLSRLEILQLSDNFLTGII 262 (279)
Q Consensus 236 ~~~~~~l~~~~~L~~L~l~~n~l~~~~ 262 (279)
.+|-.|..+..|+.|-|.+|++.+..
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCCh
Confidence 78999999999999999999999644
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=5.9e-12 Score=108.16 Aligned_cols=178 Identities=35% Similarity=0.522 Sum_probs=147.1
Q ss_pred CceEEEEecCCCcccccCCccCCCC-CCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLS-SLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
+.++.+++.++.+. .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|.+. .++......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 46899999999998 5566666664 9999999999998 66677899999999999999998 6666666889999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|++. .+|..+ .....|+++.+..|.+. ..+..+..+.++..+.+.+|.+ ...+..+..+++++.|++++|.+.
T Consensus 193 ls~N~i~-~l~~~~-~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEI-ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhh-hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee-eeccchhccccccceecccccccc
Confidence 9999998 888865 45667999999999544 5566788888999999888877 444667788889999999999998
Q ss_pred ccCchhccCCCCCCEEeccCCcccccCC
Q 044860 212 GEIPREFGNLAELELMSLPANKLQGEIP 239 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 239 (279)
.... +....+++.|++++|.+....+
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccc--ccccCccCEEeccCccccccch
Confidence 5533 8888999999999998764433
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.4e-13 Score=109.34 Aligned_cols=209 Identities=22% Similarity=0.205 Sum_probs=123.4
Q ss_pred CCCceEEEEecCCCcccccC-CccCCCCCCCEEEccCCccccc--CCccccCCCCCcEEEeecccCCCCCCccc-cCCCC
Q 044860 51 HSHKVAVLNVSGLNLTGTIP-SQLGNLSSLQSLDLSFNQLSGS--IPSAIFTTYTLKYVSFCRNQLSGAFPSFI-FNKSS 126 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~ 126 (279)
..++++.+.+.++.+..... .....+++++.|+++.|-+... +......+|+|+.|+++.|++.-...... ..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34567777777776652211 2455677888888887755422 22233467788888888776652111111 13567
Q ss_pred CcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccC-chhhcCCCCCcEEEc
Q 044860 127 LQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAI-PKEIGNLTKLKELYL 205 (279)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l 205 (279)
|+.|.++.|.++..-...+...+|+|+.|++..|...........-++.|+.|++++|.+.... -.....++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 7777888777764433444456777888888777432122223334567777788777763322 133456677777777
Q ss_pred cCcccccc-Cchh-----ccCCCCCCEEeccCCccccc-CCccccCCCCCCEEEccCcccc
Q 044860 206 GRNGLLGE-IPRE-----FGNLAELELMSLPANKLQGE-IPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 206 ~~n~l~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
+.+++.+. .|+. ...+++|++|++..|++... .-..+..+++|+++.+..|.++
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777643 2222 34567778888887777521 1123455667777777777665
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-12 Score=107.00 Aligned_cols=203 Identities=20% Similarity=0.183 Sum_probs=141.1
Q ss_pred CCCCCCCEEEccCCcccccCC-ccccCCCCCcEEEeecccCCC--CCCccccCCCCCcEEEccCCccccccChhhhcCCC
Q 044860 74 GNLSSLQSLDLSFNQLSGSIP-SAIFTTYTLKYVSFCRNQLSG--AFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLP 150 (279)
Q Consensus 74 ~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 150 (279)
+++++|+.+.+.++.+..... .....+++++.|+|++|-+.. .+......+++|+.|+++.|.+........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 467889999999988763222 355679999999999986653 33445567899999999999886333333334578
Q ss_pred CCcEEecccceeccc-CCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccC-chhccCCCCCCEEe
Q 044860 151 FLEYISLSQNMFHGG-IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEI-PREFGNLAELELMS 228 (279)
Q Consensus 151 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ 228 (279)
+|+.|.++.|.++.. ....+..+++++.|++..|...........-++.|++|+|++|++.+.. ......++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 899999999888632 2234456789999999988532333333344677999999999876331 13466789999999
Q ss_pred ccCCccccc-CCcc-----ccCCCCCCEEEccCccccccc-chhhhcccccceee
Q 044860 229 LPANKLQGE-IPQE-----LGNLSRLEILQLSDNFLTGII-SSSIFKLLLSIEFE 276 (279)
Q Consensus 229 l~~n~l~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~l~ 276 (279)
++.+.+... .|+. ...+++|+.|++..|++..+. ...+..+.+|+.|.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 999988752 3333 356789999999999986432 12345555555544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-12 Score=104.53 Aligned_cols=134 Identities=28% Similarity=0.349 Sum_probs=65.0
Q ss_pred CCCcEEEccCCccccc---cChhhhcCCCCCcEEecccceecc----cCCccccCCCCCcEEEcccccccc----cCchh
Q 044860 125 SSLQHLDFSFNTLSGE---IPANICSNLPFLEYISLSQNMFHG----GIPSTLSNCTYLQKLSLSLNDFWG----AIPKE 193 (279)
Q Consensus 125 ~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~----~~~~~ 193 (279)
+.|+++...+|.+... .....|...+.|+.+.+..|.|.. .+...+..++.|+.||+.+|.++. .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4555555555554311 111223445556666555555431 112344555666666666665532 12233
Q ss_pred hcCCCCCcEEEccCccccccCchhc----c-CCCCCCEEeccCCccccc----CCccccCCCCCCEEEccCccc
Q 044860 194 IGNLTKLKELYLGRNGLLGEIPREF----G-NLAELELMSLPANKLQGE----IPQELGNLSRLEILQLSDNFL 258 (279)
Q Consensus 194 ~~~~~~L~~L~l~~n~l~~~~~~~l----~-~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l 258 (279)
+..+++|+.|++++|.+.......+ . ..+.|++|.+.+|.++.. +-..+...|.|..|+|++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4455566666666666554322221 1 245666666666655431 112223355666666666666
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2.7e-11 Score=90.63 Aligned_cols=123 Identities=28% Similarity=0.324 Sum_probs=33.6
Q ss_pred CCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEc
Q 044860 126 SLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYL 205 (279)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 205 (279)
++++|++.+|.++ .+. .+...+.+|+.|++++|.+.. + +.+..++.|++|++++|.+....+.....+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3444444444443 222 221234455555555555542 1 23444555555555555553332221223556666666
Q ss_pred cCcccccc-CchhccCCCCCCEEeccCCcccccCC---ccccCCCCCCEEE
Q 044860 206 GRNGLLGE-IPREFGNLAELELMSLPANKLQGEIP---QELGNLSRLEILQ 252 (279)
Q Consensus 206 ~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~ 252 (279)
++|.+.+. ....+..+++|+.|++.+|++..... ..+..+|+|+.||
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 66665432 11344556666666666666653221 2345566666554
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=2.1e-10 Score=103.55 Aligned_cols=92 Identities=34% Similarity=0.638 Sum_probs=52.4
Q ss_pred CcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccC
Q 044860 176 LQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSD 255 (279)
Q Consensus 176 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 255 (279)
+..|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cccccccchhhh
Q 044860 256 NFLTGIISSSIF 267 (279)
Q Consensus 256 n~l~~~~~~~~~ 267 (279)
|.+++.+|..+.
T Consensus 500 N~l~g~iP~~l~ 511 (623)
T PLN03150 500 NSLSGRVPAALG 511 (623)
T ss_pred CcccccCChHHh
Confidence 555555555544
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=1.4e-10 Score=107.29 Aligned_cols=111 Identities=23% Similarity=0.224 Sum_probs=90.9
Q ss_pred CCCCCceEEEEecCCC--cccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCC
Q 044860 49 DVHSHKVAVLNVSGLN--LTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSS 126 (279)
Q Consensus 49 ~~~~~~l~~l~l~~~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 126 (279)
....+++++|-++++. +....+++|..++.|++||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.++..
T Consensus 541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 3455678899998886 45445556888999999999998766789999999999999999999988 89999999999
Q ss_pred CcEEEccCCccccccChhhhcCCCCCcEEecccce
Q 044860 127 LQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM 161 (279)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 161 (279)
|.+|++..+... ..++.+...+.+|++|.+....
T Consensus 620 L~~Lnl~~~~~l-~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 620 LIYLNLEVTGRL-ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hheecccccccc-ccccchhhhcccccEEEeeccc
Confidence 999999988765 3335554679999999986544
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=4.3e-10 Score=69.48 Aligned_cols=60 Identities=38% Similarity=0.522 Sum_probs=40.3
Q ss_pred CCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccc
Q 044860 199 KLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFL 258 (279)
Q Consensus 199 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 258 (279)
+|+.|++++|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566677777766655555666677777777777777655566667777777777777654
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=5.4e-11 Score=95.52 Aligned_cols=226 Identities=18% Similarity=0.212 Sum_probs=162.4
Q ss_pred CCceEEEEecCCCccc----ccCCccCCCCCCCEEEccCC---cccccCCcc-------ccCCCCCcEEEeecccCCCCC
Q 044860 52 SHKVAVLNVSGLNLTG----TIPSQLGNLSSLQSLDLSFN---QLSGSIPSA-------IFTTYTLKYVSFCRNQLSGAF 117 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n---~~~~~~~~~-------~~~l~~L~~L~l~~~~~~~~~ 117 (279)
...++.+++++|.+.. .+...+.+.++|+..+++.- +....+|.. +..+++|++++|++|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3478999999998863 24456777789999988864 333344433 346779999999999876444
Q ss_pred Ccc----ccCCCCCcEEEccCCccccccChh-------------hhcCCCCCcEEecccceecc----cCCccccCCCCC
Q 044860 118 PSF----IFNKSSLQHLDFSFNTLSGEIPAN-------------ICSNLPFLEYISLSQNMFHG----GIPSTLSNCTYL 176 (279)
Q Consensus 118 ~~~----l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L 176 (279)
+.. +..+..|++|.+.+|.+.. .... ....-++|+++....|.+.. .+...+...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 433 4567899999999998762 1111 11456789999998888753 223456777899
Q ss_pred cEEEcccccccc----cCchhhcCCCCCcEEEccCcccccc----CchhccCCCCCCEEeccCCcccccCCccc-----c
Q 044860 177 QKLSLSLNDFWG----AIPKEIGNLTKLKELYLGRNGLLGE----IPREFGNLAELELMSLPANKLQGEIPQEL-----G 243 (279)
Q Consensus 177 ~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l-----~ 243 (279)
+.+.+..|.+.. .....+..+++|+.|++..|.++.. +...+..+++|+.|++++|.+....-..+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 999999998742 2234567889999999999998743 34566778999999999999875433222 3
Q ss_pred CCCCCCEEEccCccccc----ccchhhhcccccceeeec
Q 044860 244 NLSRLEILQLSDNFLTG----IISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 244 ~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~ 278 (279)
..|+|+.+.+.+|.++. .+..++...+.|.+|+++
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 47899999999999873 344556678888888775
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.90 E-value=1.8e-09 Score=66.71 Aligned_cols=61 Identities=34% Similarity=0.473 Sum_probs=43.1
Q ss_pred CCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcc
Q 044860 174 TYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKL 234 (279)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 234 (279)
++|++|++++|.+....+..|.++++|+.|++++|.++...+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777666666677777777777777777766666777777777777777754
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=1.9e-10 Score=90.94 Aligned_cols=127 Identities=22% Similarity=0.278 Sum_probs=53.4
Q ss_pred CCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEc
Q 044860 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSL 181 (279)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 181 (279)
.|+++++++|.++ .+.++..-.+.++.|++++|.++ .+.. + ..+++|+.|++++|.++ .+...=..+-++++|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-hhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3444444444444 33333333444444455444443 2222 2 34444455555444443 11111222344444445
Q ss_pred ccccccccCchhhcCCCCCcEEEccCcccccc-CchhccCCCCCCEEeccCCccc
Q 044860 182 SLNDFWGAIPKEIGNLTKLKELYLGRNGLLGE-IPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 182 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
++|.+ ..+ +.+..+-+|..|++.+|++... -...++++|.|+++.+.+|.+.
T Consensus 360 a~N~i-E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKI-ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhH-hhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 44444 111 1223333445555555554321 1123445555555555555554
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=9.7e-09 Score=95.26 Aligned_cols=217 Identities=23% Similarity=0.187 Sum_probs=142.8
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCc--ccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQ--LSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++.+.+-++.+. ..+... +.+.|++|-+..|. +.......|..++.|+.|++++|.-.+.+|+.++.+.+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 6677777777765 333333 34579999999986 4423344477899999999999877679999999999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccc--cccCchhhcCCCCCcEEEccCcc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDF--WGAIPKEIGNLTKLKELYLGRNG 209 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~L~~L~l~~n~ 209 (279)
+++..+. .+|.++ .+++.|.+|++..+.....++.....+.+|++|.+..... ....-..+..+.+|+.+......
T Consensus 602 L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 9999998 999999 8999999999988776555566666789999998865532 11222223333444433332221
Q ss_pred c-------------------------cccCchhccCCCCCCEEeccCCccccc---------------------------
Q 044860 210 L-------------------------LGEIPREFGNLAELELMSLPANKLQGE--------------------------- 237 (279)
Q Consensus 210 l-------------------------~~~~~~~l~~~~~L~~L~l~~n~l~~~--------------------------- 237 (279)
. ....+..+..+.+|+.|.+.++.+...
T Consensus 680 ~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 759 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM 759 (889)
T ss_pred hHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc
Confidence 1 012233445566777777766655311
Q ss_pred --CCccccCCCCCCEEEccCcccccccchhhhcccccce
Q 044860 238 --IPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIE 274 (279)
Q Consensus 238 --~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 274 (279)
.+.+.-..++|+.|.+..+...+.+++...++..++.
T Consensus 760 ~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 760 LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred ccccchhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 1111123467788888877666555555555555543
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.3e-10 Score=91.67 Aligned_cols=194 Identities=20% Similarity=0.131 Sum_probs=130.4
Q ss_pred CCCEEEccCCcccc-cCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCc-cccccChhhhcCCCCCcEE
Q 044860 78 SLQSLDLSFNQLSG-SIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNT-LSGEIPANICSNLPFLEYI 155 (279)
Q Consensus 78 ~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L 155 (279)
.|++||++...++- ..-..+..+.+|+.|++.++.+.+.+...+.+..+|+.++++.+. ++..-..-++.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48899999887762 233445678899999999999988888888899999999998874 4423333456889999999
Q ss_pred ecccceecccCCccc-cC-CCCCcEEEcccccc--cccCch-hhcCCCCCcEEEccCcc-ccccCchhccCCCCCCEEec
Q 044860 156 SLSQNMFHGGIPSTL-SN-CTYLQKLSLSLNDF--WGAIPK-EIGNLTKLKELYLGRNG-LLGEIPREFGNLAELELMSL 229 (279)
Q Consensus 156 ~l~~~~~~~~~~~~l-~~-~~~L~~L~l~~n~~--~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~l 229 (279)
+++.|.........+ .+ -.+|..|+++++.- ....-+ .-..+++|..|++++|. ++......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999887653222111 11 15778888887742 111112 22467899999998875 44334445677889999999
Q ss_pred cCCcccccCCc---cccCCCCCCEEEccCcccccccchhhhcccccc
Q 044860 230 PANKLQGEIPQ---ELGNLSRLEILQLSDNFLTGIISSSIFKLLLSI 273 (279)
Q Consensus 230 ~~n~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 273 (279)
+.|.. .+|. .+...|.|.+|++.++--.+..--....+++|+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 99864 3443 346678899999877633322222234555554
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=4.6e-11 Score=104.47 Aligned_cols=180 Identities=28% Similarity=0.258 Sum_probs=120.7
Q ss_pred CCccCCCCCCCEEEccCCcccccCCccccCC-CCCcEEEeecccCC---CCC---Ccccc---CCCCCcEEEccCCcccc
Q 044860 70 PSQLGNLSSLQSLDLSFNQLSGSIPSAIFTT-YTLKYVSFCRNQLS---GAF---PSFIF---NKSSLQHLDFSFNTLSG 139 (279)
Q Consensus 70 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~~~~~---~~~---~~~l~---~l~~L~~L~l~~~~~~~ 139 (279)
|-.+..+++|++|.+.++.+.. ...+..+ ..|++|-..+. ++ ..+ ...+. ..-.|.+.++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 5567788899999999988762 1111111 23444433221 11 000 01111 1235777888888887
Q ss_pred ccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhcc
Q 044860 140 EIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFG 219 (279)
Q Consensus 140 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 219 (279)
.+...+ .-++.++.|+++.|+++.. ..+..+++|++||+++|.+.....-....+ .|+.|.+.+|.++.. ..+.
T Consensus 178 ~mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 LMDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred hHHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHH
Confidence 666666 6788999999999998743 378899999999999998843332223333 499999999998744 4677
Q ss_pred CCCCCCEEeccCCccccc-CCccccCCCCCCEEEccCcccc
Q 044860 220 NLAELELMSLPANKLQGE-IPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 220 ~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
++.+|+.||+++|.+.+. .-..+..+..|+.|.|.||++.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 889999999999988642 1223456678889999999875
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.65 E-value=1.6e-09 Score=93.51 Aligned_cols=174 Identities=28% Similarity=0.401 Sum_probs=80.6
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEe
Q 044860 77 SSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYIS 156 (279)
Q Consensus 77 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 156 (279)
..++.+.+..|.+. .+-..+..+.+|..+++.+|.+.. +...+..+++|++|++++|.|+ .+.. + ..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~-l-~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG-L-STLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc-h-hhccchhhhe
Confidence 33444444444443 122224444555555555555442 1111334455555555555554 2221 1 2344455555
Q ss_pred cccceecccCCccccCCCCCcEEEcccccccccCc-hhhcCCCCCcEEEccCccccccC--------------------c
Q 044860 157 LSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIP-KEIGNLTKLKELYLGRNGLLGEI--------------------P 215 (279)
Q Consensus 157 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~--------------------~ 215 (279)
+.+|.+.. ...+..++.|+.+++++|.+....+ . ...+.+++.+++.+|.+...- .
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceec
Confidence 55555531 1223334555555555555433222 1 233444455555544443110 0
Q ss_pred hhccCCC--CCCEEeccCCcccccCCccccCCCCCCEEEccCcccc
Q 044860 216 REFGNLA--ELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 216 ~~l~~~~--~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
..+.... +|+.+++++|++. ..+..+..+..+..+++..|.+.
T Consensus 224 ~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 224 EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 1111112 2677777787776 33345666777777777777665
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=4.7e-09 Score=90.68 Aligned_cols=172 Identities=28% Similarity=0.344 Sum_probs=97.3
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
..+++.+++.+|.+... ...+..+++|++|++++|.+.+. ..+..++.|+.|++.+|.+.. ...+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence 34777778888877743 22266677888888888877633 235566668888888887752 22344477778888
Q ss_pred ccCCccccccChh-hhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCC--CCcEEEccCc
Q 044860 132 FSFNTLSGEIPAN-ICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLT--KLKELYLGRN 208 (279)
Q Consensus 132 l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n 208 (279)
+++|.+. .+... . ..+.+++.+.+.+|.+.. ...+..+..+..+++..|.+....+. .... +|+.+++++|
T Consensus 169 l~~n~i~-~ie~~~~-~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 169 LSYNRIV-DIENDEL-SELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLSGN 242 (414)
T ss_pred CCcchhh-hhhhhhh-hhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcccC
Confidence 8888776 44441 2 556777777777776642 22233333333334444444222111 1111 2566666666
Q ss_pred cccccCchhccCCCCCCEEeccCCccc
Q 044860 209 GLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 209 ~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
.+. ..+..+..+..+..+++.+|++.
T Consensus 243 ~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 243 RIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccc-cccccccccccccccchhhcccc
Confidence 654 22234444555566666655543
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.48 E-value=2e-07 Score=52.83 Aligned_cols=40 Identities=48% Similarity=1.058 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhcCCCCCccccCCCCCC--CCCcccceeeeC
Q 044860 9 TTDRDALLALKAHITHDPTNFFAKNWNTS--TPVCNWTGVTCD 49 (279)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~w~~~--~~~~~~~~~~~~ 49 (279)
.+|..+|++||.++..+|...+. +|... .++|.|.|+.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~-~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLS-SWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCT-T--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccc-cCCCcCCCCCeeeccEEeC
Confidence 57999999999999977877787 99987 799999999994
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=7e-09 Score=82.12 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=96.2
Q ss_pred CCcEEEeecccCCC-CCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccce-eccc-CCccccCCCCCcE
Q 044860 102 TLKYVSFCRNQLSG-AFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNM-FHGG-IPSTLSNCTYLQK 178 (279)
Q Consensus 102 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~ 178 (279)
.|++++|+...++. .+-..+..+.+|+.|.+.++++.+.+...+ .+-.+|+.++++.+. ++.. ..-.+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 36666666655542 122233445666666666666665555555 556666666665543 2211 1123455666777
Q ss_pred EEcccccccccC-chhhcC-CCCCcEEEccCccc--cccCch-hccCCCCCCEEeccCCcc-cccCCccccCCCCCCEEE
Q 044860 179 LSLSLNDFWGAI-PKEIGN-LTKLKELYLGRNGL--LGEIPR-EFGNLAELELMSLPANKL-QGEIPQELGNLSRLEILQ 252 (279)
Q Consensus 179 L~l~~n~~~~~~-~~~~~~-~~~L~~L~l~~n~l--~~~~~~-~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~~~L~~L~ 252 (279)
|+++.|...... ...... -++|..|+++|+.- ...... ...++++|.+|||++|.. +...-..+..++.|++|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 777766553221 111111 13566677766531 111111 234678888888888743 322334566778888888
Q ss_pred ccCcccccccchh---hhcccccceeeec
Q 044860 253 LSDNFLTGIISSS---IFKLLLSIEFEIF 278 (279)
Q Consensus 253 l~~n~l~~~~~~~---~~~l~~L~~l~l~ 278 (279)
++.|.. ++|.. +...|+|.+|+++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEec
Confidence 888842 33432 5677888888865
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=1.2e-07 Score=75.26 Aligned_cols=87 Identities=22% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCCCCCEEEccCCcccc--cCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCC
Q 044860 75 NLSSLQSLDLSFNQLSG--SIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 75 ~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (279)
...+++.+++.+|.+.+ ++...+.++|.|++|+++.|.+...+...-....+|++|.+.+..+...-.......+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34567777777777664 2334445677777777777766532222113456677777777666544334444666667
Q ss_pred cEEecccce
Q 044860 153 EYISLSQNM 161 (279)
Q Consensus 153 ~~L~l~~~~ 161 (279)
+.|+++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 777766664
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.34 E-value=1.3e-06 Score=65.63 Aligned_cols=106 Identities=23% Similarity=0.199 Sum_probs=65.9
Q ss_pred CCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccC-chhccCCCCCCEE
Q 044860 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEI-PREFGNLAELELM 227 (279)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L 227 (279)
+.+...+++++|.+. ....|..++.|.+|.+++|+++...|..-.-+++|..|.+.+|.+.... ...+..++.|++|
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 445666677777663 2234666677777777777776666655455566777777777765321 1335566777777
Q ss_pred eccCCcccccCC---ccccCCCCCCEEEccCc
Q 044860 228 SLPANKLQGEIP---QELGNLSRLEILQLSDN 256 (279)
Q Consensus 228 ~l~~n~l~~~~~---~~l~~~~~L~~L~l~~n 256 (279)
.+-+|.++..-. ..+..+|+|+.||.++-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 777777654321 34566777777776553
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=8.2e-08 Score=76.17 Aligned_cols=201 Identities=17% Similarity=0.150 Sum_probs=124.6
Q ss_pred CCCceEEEEecCCCccc--ccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCC-CccccCCCCC
Q 044860 51 HSHKVAVLNVSGLNLTG--TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAF-PSFIFNKSSL 127 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L 127 (279)
..++++.+++.+|.++. .+...+.++++|++|+++.|.+...+...=....+|+.|.|.++.+.... ...+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34588999999999873 34455678999999999999887443322246778999999998776433 3445678889
Q ss_pred cEEEccCCccccccC---hhhhcCCCCCcEEecccceecc--cCCccccCCCCCcEEEcccccccc-cCchhhcCCCCCc
Q 044860 128 QHLDFSFNTLSGEIP---ANICSNLPFLEYISLSQNMFHG--GIPSTLSNCTYLQKLSLSLNDFWG-AIPKEIGNLTKLK 201 (279)
Q Consensus 128 ~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~ 201 (279)
++|.++.|.+. .+- ..+-..-+.+.++++..|.... ..-..-.-++++..+.+..|.+.. .....+..++.+-
T Consensus 149 telHmS~N~~r-q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDNSLR-QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccchhh-hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 99999988554 111 1110112345556655554321 001111224566677777776532 1223344556667
Q ss_pred EEEccCcccccc-CchhccCCCCCCEEeccCCcccccCC------ccccCCCCCCEEE
Q 044860 202 ELYLGRNGLLGE-IPREFGNLAELELMSLPANKLQGEIP------QELGNLSRLEILQ 252 (279)
Q Consensus 202 ~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~------~~l~~~~~L~~L~ 252 (279)
.|+++.+++.+. ..+.+.+++.|.-|.+.++.+...+. -.++++++++.|+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 788888887643 23567788888888888887753321 1245666666554
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=1.4e-06 Score=49.47 Aligned_cols=38 Identities=39% Similarity=0.656 Sum_probs=23.7
Q ss_pred CCCCEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 222 AELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
++|++|++++|+++ .+|..++.+++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35667777777776 445456677777777777777664
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.21 E-value=5.3e-08 Score=85.84 Aligned_cols=101 Identities=33% Similarity=0.361 Sum_probs=50.9
Q ss_pred CcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchh-ccCCCCCCEEecc
Q 044860 152 LEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPRE-FGNLAELELMSLP 230 (279)
Q Consensus 152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~ 230 (279)
|.+.+.+.|.+. .+..++.-++.++.|+++.|.+.+.. .+..+++|+.|+++.|.++ .+|.. ... .+|..|.+.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhh-hhheeeeec
Confidence 444444445443 33444555555666666666553322 4455566666666666654 22321 112 235666666
Q ss_pred CCcccccCCccccCCCCCCEEEccCcccc
Q 044860 231 ANKLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 231 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
+|.++ .+- .++++.+|..||++.|-+.
T Consensus 241 nN~l~-tL~-gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 241 NNALT-TLR-GIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ccHHH-hhh-hHHhhhhhhccchhHhhhh
Confidence 66554 222 2455566666666666543
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=8.6e-07 Score=69.63 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=17.9
Q ss_pred CCCCCcEEEeecccCCCCCCc----cccCCCCCcEEEccCCcc
Q 044860 99 TTYTLKYVSFCRNQLSGAFPS----FIFNKSSLQHLDFSFNTL 137 (279)
Q Consensus 99 ~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 137 (279)
++|+|+..+|++|.+....|+ .+.....|.+|.+++|.+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 445555555555544332222 223344555555555544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.2e-07 Score=66.79 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=49.5
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
..+++.+++++|.+....+.....++.+++|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++.+|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 345666666666665333333334455666666666665 45555666666666666666655 4455554555555555
Q ss_pred ccCCccccccChh
Q 044860 132 FSFNTLSGEIPAN 144 (279)
Q Consensus 132 l~~~~~~~~~~~~ 144 (279)
..+|... .++..
T Consensus 130 s~~na~~-eid~d 141 (177)
T KOG4579|consen 130 SPENARA-EIDVD 141 (177)
T ss_pred CCCCccc-cCcHH
Confidence 5555544 44444
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.07 E-value=1.6e-05 Score=56.87 Aligned_cols=126 Identities=18% Similarity=0.194 Sum_probs=48.0
Q ss_pred ChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCC
Q 044860 142 PANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNL 221 (279)
Q Consensus 142 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 221 (279)
+...|.++.+|+.+.+.. .+.......+..+.+++.+.+..+ +.......|.++.+++.+.+.+ .+.......+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 344445555555555543 233233444555555555555543 3333444455555566666644 3322333455556
Q ss_pred CCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccc
Q 044860 222 AELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSI 273 (279)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 273 (279)
++|+.+.+..+ +.......+.++ .++.+.+.. .+..+....+..+++|+
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 66666666554 332334455555 666666654 33434444555555553
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.04 E-value=7.3e-06 Score=61.68 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=79.7
Q ss_pred CCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccC-CccccCCCCCCEEE
Q 044860 174 TYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEI-PQELGNLSRLEILQ 252 (279)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~ 252 (279)
.....+|+++|.+- .. ..|..++.|.+|.+++|.|+...|..-.-+++|..|.+.+|.+.... -.-+..||+|+.|.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 46678899999883 22 34667899999999999999877776667789999999999986421 23368899999999
Q ss_pred ccCcccccccc---hhhhcccccceeee
Q 044860 253 LSDNFLTGIIS---SSIFKLLLSIEFEI 277 (279)
Q Consensus 253 l~~n~l~~~~~---~~~~~l~~L~~l~l 277 (279)
+-+|+++..-- -.+.++++|+.|+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeeh
Confidence 99999885432 24678888888874
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.02 E-value=1.5e-06 Score=68.36 Aligned_cols=212 Identities=20% Similarity=0.142 Sum_probs=139.7
Q ss_pred eCCCCCceEEEEecCCCc---cccc-------CCccCCCCCCCEEEccCCcccccCCcc----ccCCCCCcEEEeecccC
Q 044860 48 CDVHSHKVAVLNVSGLNL---TGTI-------PSQLGNLSSLQSLDLSFNQLSGSIPSA----IFTTYTLKYVSFCRNQL 113 (279)
Q Consensus 48 ~~~~~~~l~~l~l~~~~~---~~~~-------~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~l~~~~~ 113 (279)
|.....+++..+++.--. ...+ ...+.++++|+..+++.|.+....|.. ++....|.+|.+++|.+
T Consensus 53 ~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 53 VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 334445677777665311 1112 234678999999999999887665544 45678899999999866
Q ss_pred CCC----CCcc---------ccCCCCCcEEEccCCccccccChh----hhcCCCCCcEEecccceeccc-----CCcccc
Q 044860 114 SGA----FPSF---------IFNKSSLQHLDFSFNTLSGEIPAN----ICSNLPFLEYISLSQNMFHGG-----IPSTLS 171 (279)
Q Consensus 114 ~~~----~~~~---------l~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~-----~~~~l~ 171 (279)
-.. +... ...-+.|++++...|.+. ..+.. .+..-.+|+++.+..|.|... +-..+.
T Consensus 133 Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~ 211 (388)
T COG5238 133 GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF 211 (388)
T ss_pred CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH
Confidence 422 1111 223478999999998876 44432 234446889999988887522 112445
Q ss_pred CCCCCcEEEccccccccc----CchhhcCCCCCcEEEccCccccccCchh----cc--CCCCCCEEeccCCcccccCC--
Q 044860 172 NCTYLQKLSLSLNDFWGA----IPKEIGNLTKLKELYLGRNGLLGEIPRE----FG--NLAELELMSLPANKLQGEIP-- 239 (279)
Q Consensus 172 ~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~----l~--~~~~L~~L~l~~n~l~~~~~-- 239 (279)
.+.+|+.||+.+|.++.. +...+..++.|+.|++..|-+....... +. ..++|..|...+|-+.+..-
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 678999999999987532 3344567788999999999887543332 22 35788999998887654221
Q ss_pred ----cc-ccCCCCCCEEEccCccccc
Q 044860 240 ----QE-LGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 240 ----~~-l~~~~~L~~L~l~~n~l~~ 260 (279)
.. =...|-|..|.+.+|++..
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcchh
Confidence 11 1456778888888888864
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.99 E-value=2.4e-07 Score=65.20 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=34.6
Q ss_pred CCCCCcEEEeecccCCCCCCcccc-CCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCc
Q 044860 99 TTYTLKYVSFCRNQLSGAFPSFIF-NKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQ 177 (279)
Q Consensus 99 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 177 (279)
....|+..++++|.+. ..|+.+. +.+.++.+++.+|.+. .+|..+ ..++.|+.|+++.|.+. ..|..+..+.++.
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 3344444455555444 2332222 2234444444444444 444442 44444444444444443 2333333333444
Q ss_pred EEEccccc
Q 044860 178 KLSLSLND 185 (279)
Q Consensus 178 ~L~l~~n~ 185 (279)
.|+..+|.
T Consensus 127 ~Lds~~na 134 (177)
T KOG4579|consen 127 MLDSPENA 134 (177)
T ss_pred HhcCCCCc
Confidence 44444333
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=3.9e-05 Score=64.96 Aligned_cols=71 Identities=17% Similarity=0.364 Sum_probs=39.6
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecc-cCCCCCCccccCCCCCcEEE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRN-QLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~ 131 (279)
.+++.|++++|.+. .+|. + -.+|++|.+++|.-...+|..+ .++|++|.+.+| .+. .+| .+|+.|.
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEE
Confidence 46677777777666 3442 2 1357777777654333455433 246777777766 332 333 2355566
Q ss_pred ccCCc
Q 044860 132 FSFNT 136 (279)
Q Consensus 132 l~~~~ 136 (279)
+..+.
T Consensus 119 L~~n~ 123 (426)
T PRK15386 119 IKGSA 123 (426)
T ss_pred eCCCC
Confidence 65543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.1e-05 Score=45.71 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=11.7
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEeeccc
Q 044860 79 LQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQ 112 (279)
Q Consensus 79 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (279)
|++|++++|.+. .+|..+.++++|+.|++++|.
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCC
Confidence 334444444333 223233333333333333333
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=8.7e-05 Score=62.88 Aligned_cols=137 Identities=16% Similarity=0.192 Sum_probs=85.8
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCC-ccccccChhhhcCCCC
Q 044860 73 LGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFN-TLSGEIPANICSNLPF 151 (279)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~ 151 (279)
+..+++++.|++++|.+. .+|. -..+|+.|.+.+|.-...+|..+ ..+|++|.+++| .+. .+| ..
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence 455688999999999877 5562 23469999998865444666554 368999999988 443 444 34
Q ss_pred CcEEecccceecccCCccccCC-CCCcEEEccccccc--ccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEe
Q 044860 152 LEYISLSQNMFHGGIPSTLSNC-TYLQKLSLSLNDFW--GAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMS 228 (279)
Q Consensus 152 L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 228 (279)
|+.|++..+... . +..+ ++|+.|.+.++... ...+.. -.++|+.|.+++|... ..|..+. .+|+.|+
T Consensus 114 Le~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCc-c----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 677777655432 1 1222 35667776543211 111111 1257999999988865 3444332 6889999
Q ss_pred ccCCc
Q 044860 229 LPANK 233 (279)
Q Consensus 229 l~~n~ 233 (279)
++.+.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87763
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.85 E-value=0.00011 Score=52.59 Aligned_cols=105 Identities=26% Similarity=0.291 Sum_probs=41.3
Q ss_pred ccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCC
Q 044860 72 QLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPF 151 (279)
Q Consensus 72 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 151 (279)
.|.++.+|+.+.+.. .+.......|..+.+|+.+.+..+ +.......+..+++++.+.+.. .+. .++...|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 455555666666553 233233344555555666666553 3333333444454566665543 332 444445555556
Q ss_pred CcEEecccceecccCCccccCCCCCcEEEcc
Q 044860 152 LEYISLSQNMFHGGIPSTLSNCTYLQKLSLS 182 (279)
Q Consensus 152 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 182 (279)
++.+.+..+ +.......+.++ +++.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 666555443 222223334443 55555544
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.82 E-value=9.7e-06 Score=73.85 Aligned_cols=196 Identities=19% Similarity=0.200 Sum_probs=101.1
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccC--Cc-c------c------cCCCCCcEEEeecccCCC-CC
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSI--PS-A------I------FTTYTLKYVSFCRNQLSG-AF 117 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~-~------~------~~l~~L~~L~l~~~~~~~-~~ 117 (279)
+++.+++.+..+....-...... .|+.+.+.+-...... .. . + ..-.+|++|++++...-. .-
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~-~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQ-DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhc-cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 66677776665543222222232 3677766653222110 00 0 0 012467778777643321 11
Q ss_pred Cccc-cCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccc-cCchhhc
Q 044860 118 PSFI-FNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWG-AIPKEIG 195 (279)
Q Consensus 118 ~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~ 195 (279)
+..+ ..+|+|++|.+++-.+...--..+|.++++|..||++++.++.. ..++.+++|+.|.+.+-.+.. ..-..+.
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 2222 34678888887776654222345567778888888877777532 566777777777666544421 1112344
Q ss_pred CCCCCcEEEccCccccccC------chhccCCCCCCEEeccCCcccccCC-ccccCCCCCCEEE
Q 044860 196 NLTKLKELYLGRNGLLGEI------PREFGNLAELELMSLPANKLQGEIP-QELGNLSRLEILQ 252 (279)
Q Consensus 196 ~~~~L~~L~l~~n~l~~~~------~~~l~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~ 252 (279)
++++|+.||+|........ .+.-..+|+|+.||.+++.+....- ..+...++|+.+.
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 5677777777765433211 1112235666666666666554322 2233445555443
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=1.5e-05 Score=72.69 Aligned_cols=84 Identities=19% Similarity=0.249 Sum_probs=34.8
Q ss_pred CCCCCcEEecccceecc-cCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc-cCchhccCCCCCC
Q 044860 148 NLPFLEYISLSQNMFHG-GIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG-EIPREFGNLAELE 225 (279)
Q Consensus 148 ~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~ 225 (279)
.+|.|+.|.+.+-.+.. .+.....++++|..||+++.++... ..++.+++|+.|.+.+-.+.. .....+..+++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 34555555554433311 1112223344555555555544222 334444555555444443332 1112233445555
Q ss_pred EEeccCCc
Q 044860 226 LMSLPANK 233 (279)
Q Consensus 226 ~L~l~~n~ 233 (279)
.||++...
T Consensus 224 vLDIS~~~ 231 (699)
T KOG3665|consen 224 VLDISRDK 231 (699)
T ss_pred eeeccccc
Confidence 55554443
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.48 E-value=3.7e-06 Score=69.86 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=50.2
Q ss_pred CCCCCcEEEccCccccc--cCchhccCCCCCCEEeccCCcc-ccc----CCccccCCCCCCEEEccCcccc-cccchhhh
Q 044860 196 NLTKLKELYLGRNGLLG--EIPREFGNLAELELMSLPANKL-QGE----IPQELGNLSRLEILQLSDNFLT-GIISSSIF 267 (279)
Q Consensus 196 ~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l-~~~----~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~ 267 (279)
++..|+.+++.++.... .+...-.+++.|+.+.+++|.. +.. ....-.....|..+.+++++.. +..-+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 34456666665554321 1222223567888888887743 222 1222345677888889888654 55667788
Q ss_pred cccccceeeec
Q 044860 268 KLLLSIEFEIF 278 (279)
Q Consensus 268 ~l~~L~~l~l~ 278 (279)
.++.|+.++++
T Consensus 424 ~c~~Leri~l~ 434 (483)
T KOG4341|consen 424 ICRNLERIELI 434 (483)
T ss_pred hCcccceeeee
Confidence 88888887764
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=1.3e-05 Score=63.46 Aligned_cols=100 Identities=18% Similarity=0.080 Sum_probs=69.6
Q ss_pred CCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccC-CccccCCCCCCEE
Q 044860 173 CTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEI-PQELGNLSRLEIL 251 (279)
Q Consensus 173 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L 251 (279)
+.+.++|++.+|.+.++ .....++.|+.|.|+-|.|+.. ..+.++++|++|+|..|.|.... -.-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34566777777776443 2345677888888888888644 45677888888888888876321 1346788888888
Q ss_pred EccCcccccccch-----hhhcccccceee
Q 044860 252 QLSDNFLTGIISS-----SIFKLLLSIEFE 276 (279)
Q Consensus 252 ~l~~n~l~~~~~~-----~~~~l~~L~~l~ 276 (279)
.|..|+-.+.-++ .+.-+|+|++|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877655443 456788888775
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.06 E-value=0.00027 Score=55.45 Aligned_cols=83 Identities=22% Similarity=0.295 Sum_probs=37.6
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCC--cccccCCccccCCCCCcEEEeecccCCC-CCCccccCCCCCcEE
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFN--QLSGSIPSAIFTTYTLKYVSFCRNQLSG-AFPSFIFNKSSLQHL 130 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L 130 (279)
.+..+++.+..++.. ..|..+++|+.|.++.| ++.+.++.....+|+|+++++++|++.. .-...+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 344444444444311 22444555666666665 4443344444445566666666655541 111122334445555
Q ss_pred EccCCccc
Q 044860 131 DFSFNTLS 138 (279)
Q Consensus 131 ~l~~~~~~ 138 (279)
++..|..+
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 55555443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00066 Score=53.35 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=58.5
Q ss_pred cCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecc--cCCCCCCccccCCCCCcEEEccCCccccccChhh-
Q 044860 69 IPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRN--QLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANI- 145 (279)
Q Consensus 69 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~- 145 (279)
+......+..|+.+++.+..++. -..+-.+++|++|.++.| .+.+.++.....+++|+++++++|++.. +..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 44445566677777777666552 234556888999999988 5554454445556888888888888752 2221
Q ss_pred -hcCCCCCcEEecccceec
Q 044860 146 -CSNLPFLEYISLSQNMFH 163 (279)
Q Consensus 146 -~~~l~~L~~L~l~~~~~~ 163 (279)
...+.+|..|++..|..+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 145666777777776655
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=3.4e-05 Score=61.08 Aligned_cols=99 Identities=26% Similarity=0.277 Sum_probs=64.6
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCC-CccccCCCCCcEEEc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAF-PSFIFNKSSLQHLDF 132 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l 132 (279)
++++|+.-+|.+.++ ....+|+.|++|.|+-|+++.. ..+..+.+|+.|+|..|.|.... -.-+.++++|+.|.+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 677788888887754 2345678888888888888632 33677888888888888776321 123456777777777
Q ss_pred cCCccccccChh----hhcCCCCCcEEe
Q 044860 133 SFNTLSGEIPAN----ICSNLPFLEYIS 156 (279)
Q Consensus 133 ~~~~~~~~~~~~----~~~~l~~L~~L~ 156 (279)
..|.-.+..+.. +..-+++|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 777655433332 224466666664
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.78 E-value=9e-05 Score=65.37 Aligned_cols=12 Identities=33% Similarity=0.384 Sum_probs=5.1
Q ss_pred CCCCCcEEeccc
Q 044860 148 NLPFLEYISLSQ 159 (279)
Q Consensus 148 ~l~~L~~L~l~~ 159 (279)
.++.|++|++.+
T Consensus 293 ~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 293 RCPSLRELDLSG 304 (482)
T ss_pred hcCcccEEeeec
Confidence 344444444443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.63 E-value=9.4e-05 Score=65.24 Aligned_cols=111 Identities=21% Similarity=0.123 Sum_probs=56.5
Q ss_pred CCCCCEEEccCCccccc--CCccccCCCCCcEEEeecc-cCCCCC----CccccCCCCCcEEEccCCc-cccccChhhhc
Q 044860 76 LSSLQSLDLSFNQLSGS--IPSAIFTTYTLKYVSFCRN-QLSGAF----PSFIFNKSSLQHLDFSFNT-LSGEIPANICS 147 (279)
Q Consensus 76 l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~ 147 (279)
++.|+.+.+..+.-... ........+.|+.|+++++ ...... ......+.+|+.++++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666532212 2233445667777777652 111111 1122345667777777666 44333333333
Q ss_pred CCCCCcEEecccce-eccc-CCccccCCCCCcEEEcccccc
Q 044860 148 NLPFLEYISLSQNM-FHGG-IPSTLSNCTYLQKLSLSLNDF 186 (279)
Q Consensus 148 ~l~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~n~~ 186 (279)
.+++|++|.+..+. +++. +......++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 46677777655554 3321 122234456677777776644
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.32 E-value=0.0015 Score=30.79 Aligned_cols=19 Identities=58% Similarity=0.536 Sum_probs=10.8
Q ss_pred CCEEEccCcccccccchhhh
Q 044860 248 LEILQLSDNFLTGIISSSIF 267 (279)
Q Consensus 248 L~~L~l~~n~l~~~~~~~~~ 267 (279)
|++|++++|+++ .+|+.++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 566666666666 4444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.19 E-value=0.0086 Score=28.12 Aligned_cols=18 Identities=39% Similarity=0.715 Sum_probs=9.0
Q ss_pred CCEEeccCCcccccCCccc
Q 044860 224 LELMSLPANKLQGEIPQEL 242 (279)
Q Consensus 224 L~~L~l~~n~l~~~~~~~l 242 (279)
|++|++++|.++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 344333
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.91 E-value=6.9e-05 Score=65.48 Aligned_cols=180 Identities=25% Similarity=0.199 Sum_probs=87.1
Q ss_pred CCEEEccCCcccccCC----ccccCCCCCcEEEeecccCCCCC----CccccCC-CCCcEEEccCCcccc----ccChhh
Q 044860 79 LQSLDLSFNQLSGSIP----SAIFTTYTLKYVSFCRNQLSGAF----PSFIFNK-SSLQHLDFSFNTLSG----EIPANI 145 (279)
Q Consensus 79 L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l-~~L~~L~l~~~~~~~----~~~~~~ 145 (279)
+..+.+.+|.+.+... ..+...+.|..|++++|.+.+.. ...+... ..+++|.+..|.+++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5555666665553222 22334556666666666555221 1122222 445555555555543 223333
Q ss_pred hcCCCCCcEEecccceecc----cCCccc----cCCCCCcEEEcccccccccC----chhhcCCCC-CcEEEccCccccc
Q 044860 146 CSNLPFLEYISLSQNMFHG----GIPSTL----SNCTYLQKLSLSLNDFWGAI----PKEIGNLTK-LKELYLGRNGLLG 212 (279)
Q Consensus 146 ~~~l~~L~~L~l~~~~~~~----~~~~~l----~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~-L~~L~l~~n~l~~ 212 (279)
.....++.+++..|.+.. ..+..+ ....++++|.+.+|.++... ...+...+. +..+++..|.+.+
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 235556666666555421 111222 23456666666666553211 112222333 5556666666553
Q ss_pred c----CchhccCC-CCCCEEeccCCcccccCC----ccccCCCCCCEEEccCcccc
Q 044860 213 E----IPREFGNL-AELELMSLPANKLQGEIP----QELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 213 ~----~~~~l~~~-~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~l~~n~l~ 259 (279)
. ..+.+..+ ..++++++..|.++.... ..+..++.++.+.+++|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 22233333 556677777776654322 33445566667777766665
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.0046 Score=46.94 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=34.9
Q ss_pred CCcEEEcccccccccCchhhcCCCCCcEEEccCcccc-ccCchhcc-CCCCCCEEeccCC-cccccCCccccCCCCCCEE
Q 044860 175 YLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL-GEIPREFG-NLAELELMSLPAN-KLQGEIPQELGNLSRLEIL 251 (279)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~-~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L 251 (279)
.++.++-+++.+....-..+.++..++.|.+.+|.-- +...+.++ ..++|+.|++++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3445555555544444444445555555555554321 11111111 2345555555555 3443333344444555544
Q ss_pred Ecc
Q 044860 252 QLS 254 (279)
Q Consensus 252 ~l~ 254 (279)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.0078 Score=45.75 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=61.6
Q ss_pred CCcEEEccCccccccCchhccCCCCCCEEeccCCccccc--CCccccCCCCCCEEEccCc-ccccccchhhhccccccee
Q 044860 199 KLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGE--IPQELGNLSRLEILQLSDN-FLTGIISSSIFKLLLSIEF 275 (279)
Q Consensus 199 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~l 275 (279)
.++.++-+++.+.....+.+.+++.++.|.+.+|.--+. +...-.-.++|+.|++++| +||+.--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 378899999998877778888899999999988853221 1111124589999999999 6888777889999999988
Q ss_pred eec
Q 044860 276 EIF 278 (279)
Q Consensus 276 ~l~ 278 (279)
.++
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 764
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.95 E-value=0.027 Score=26.96 Aligned_cols=22 Identities=36% Similarity=0.374 Sum_probs=12.5
Q ss_pred CCCCCEEEccCcccccccchhh
Q 044860 245 LSRLEILQLSDNFLTGIISSSI 266 (279)
Q Consensus 245 ~~~L~~L~l~~n~l~~~~~~~~ 266 (279)
+++|++|++++|.+++..+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567777777777776555444
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.73 E-value=0.05 Score=23.68 Aligned_cols=13 Identities=54% Similarity=0.629 Sum_probs=5.1
Q ss_pred CCCEEEccCcccc
Q 044860 247 RLEILQLSDNFLT 259 (279)
Q Consensus 247 ~L~~L~l~~n~l~ 259 (279)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.30 E-value=0.00037 Score=60.99 Aligned_cols=175 Identities=24% Similarity=0.322 Sum_probs=116.2
Q ss_pred CcEEEeecccCCCC----CCccccCCCCCcEEEccCCccccccChhhhcCC----CCCcEEecccceecc----cCCccc
Q 044860 103 LKYVSFCRNQLSGA----FPSFIFNKSSLQHLDFSFNTLSGEIPANICSNL----PFLEYISLSQNMFHG----GIPSTL 170 (279)
Q Consensus 103 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~~~~----~~~~~l 170 (279)
+..+.+.+|.+... +...+...+.|+.|++++|.+.+.-...+...+ ..+++|.+..|.++. .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77888888887743 334556678999999999998754333333322 346677777777653 234455
Q ss_pred cCCCCCcEEEcccccccc----cCchhh----cCCCCCcEEEccCcccccc----CchhccCCCC-CCEEeccCCccccc
Q 044860 171 SNCTYLQKLSLSLNDFWG----AIPKEI----GNLTKLKELYLGRNGLLGE----IPREFGNLAE-LELMSLPANKLQGE 237 (279)
Q Consensus 171 ~~~~~L~~L~l~~n~~~~----~~~~~~----~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~-L~~L~l~~n~l~~~ 237 (279)
.....++.++++.|.+.. ..+..+ ....+++.|++++|.++.. +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 557788888998887731 122222 3467899999999998743 2233444555 77799999988643
Q ss_pred ----CCccccCC-CCCCEEEccCcccccc----cchhhhcccccceeee
Q 044860 238 ----IPQELGNL-SRLEILQLSDNFLTGI----ISSSIFKLLLSIEFEI 277 (279)
Q Consensus 238 ----~~~~l~~~-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~l~l 277 (279)
....+... +.++.++++.|.+++. +...+..++.++++.+
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l 297 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSL 297 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhc
Confidence 22334445 6789999999999854 4455666666766654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.18 E-value=0.097 Score=25.50 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=12.9
Q ss_pred CCCcEEEccCCccccccChhhh
Q 044860 125 SSLQHLDFSFNTLSGEIPANIC 146 (279)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~ 146 (279)
++|++|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.18 E-value=0.097 Score=25.50 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=12.9
Q ss_pred CCCcEEEccCCccccccChhhh
Q 044860 125 SSLQHLDFSFNTLSGEIPANIC 146 (279)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~ 146 (279)
++|++|++++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.88 E-value=0.16 Score=24.75 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=10.7
Q ss_pred CCCCEEEccCcccccccc
Q 044860 246 SRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~ 263 (279)
++|+.|++++|.++.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666665433
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.88 E-value=0.16 Score=24.75 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=10.7
Q ss_pred CCCCEEEccCcccccccc
Q 044860 246 SRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~~~~ 263 (279)
++|+.|++++|.++.+.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 456666666666665433
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.80 E-value=0.0073 Score=47.02 Aligned_cols=85 Identities=20% Similarity=0.176 Sum_probs=49.4
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
+..+++.||++.+.+. .+...|+.+..+..|+++.|.+. -.|..+.....+..+++..|+.. ..|.++.+.+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3446666666666554 33344555556666666666554 45555555556666666666555 566666666666666
Q ss_pred EccCCccc
Q 044860 131 DFSFNTLS 138 (279)
Q Consensus 131 ~l~~~~~~ 138 (279)
+...+.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 66665543
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.40 E-value=0.3 Score=41.60 Aligned_cols=131 Identities=21% Similarity=0.143 Sum_probs=75.9
Q ss_pred hhcCCCCCcEEecccceecccC--CccccCCCCCcEEEcccccccc--cCchhhcCCCCCcEEEccCcccc-ccC----c
Q 044860 145 ICSNLPFLEYISLSQNMFHGGI--PSTLSNCTYLQKLSLSLNDFWG--AIPKEIGNLTKLKELYLGRNGLL-GEI----P 215 (279)
Q Consensus 145 ~~~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~-~~~----~ 215 (279)
+..+.++|+.+.+..++--+.. -..-.+++.|+.+++..+.... .+...-.+++.|+.+.++.|... +.. .
T Consensus 315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence 3345666777777665521110 1112345677777777665421 12222246788999999988643 221 1
Q ss_pred hhccCCCCCCEEeccCCccc-ccCCccccCCCCCCEEEccCccc-c-cccchhhhccccccee
Q 044860 216 REFGNLAELELMSLPANKLQ-GEIPQELGNLSRLEILQLSDNFL-T-GIISSSIFKLLLSIEF 275 (279)
Q Consensus 216 ~~l~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l-~-~~~~~~~~~l~~L~~l 275 (279)
..-..+..++.+.+.++... ...-..+..+++|+.+++-+++- + +.+-..-.++|+++..
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 12234678899999998654 23345567888999999888843 3 2233334567766543
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.78 E-value=0.017 Score=45.06 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=38.0
Q ss_pred CCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEe
Q 044860 149 LPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMS 228 (279)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 228 (279)
..+.+.|+++.|.+. .+...++-+..+..|+++.|.+ ...|..+.....++.+++..|... ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344444555554443 2233344444444555555544 334444444444444444444443 4444555555555555
Q ss_pred ccCCcc
Q 044860 229 LPANKL 234 (279)
Q Consensus 229 l~~n~l 234 (279)
+-++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.32 E-value=1.6 Score=21.31 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=10.2
Q ss_pred CCCCEEEccCccccc
Q 044860 246 SRLEILQLSDNFLTG 260 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~ 260 (279)
.+|+.|+++.|.++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 467777777777753
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.34 E-value=1.4 Score=21.89 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=9.8
Q ss_pred CCCCEEEccCccccc
Q 044860 246 SRLEILQLSDNFLTG 260 (279)
Q Consensus 246 ~~L~~L~l~~n~l~~ 260 (279)
++|+.|+|++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456777777776653
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.08 E-value=2.5 Score=20.38 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=10.0
Q ss_pred CCCCCEEEccCcc-ccc
Q 044860 245 LSRLEILQLSDNF-LTG 260 (279)
Q Consensus 245 ~~~L~~L~l~~n~-l~~ 260 (279)
+++|++|++++|. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4567777777773 443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.41 E-value=3.9 Score=19.98 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=9.0
Q ss_pred CCcEEEccCCccccccC
Q 044860 126 SLQHLDFSFNTLSGEIP 142 (279)
Q Consensus 126 ~L~~L~l~~~~~~~~~~ 142 (279)
+|++|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4556666666655 444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.87 E-value=3.3 Score=36.80 Aligned_cols=65 Identities=25% Similarity=0.174 Sum_probs=33.9
Q ss_pred CCCCCCEEEccCCcccc--cCCccccCCCCCcEEEeecccCCCCCCcccc--CCCCCcEEEccCCcccc
Q 044860 75 NLSSLQSLDLSFNQLSG--SIPSAIFTTYTLKYVSFCRNQLSGAFPSFIF--NKSSLQHLDFSFNTLSG 139 (279)
Q Consensus 75 ~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~ 139 (279)
+.+.+..+++++|++.. .+...-...|+|+.|+|++|.........+. +...|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 45566667777776542 1222223466777777777621111111222 23456777777776653
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=58.34 E-value=5.4 Score=35.53 Aligned_cols=11 Identities=55% Similarity=0.619 Sum_probs=4.5
Q ss_pred CCCcEEEccCc
Q 044860 198 TKLKELYLGRN 208 (279)
Q Consensus 198 ~~L~~L~l~~n 208 (279)
++|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 33444444443
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.98 E-value=40 Score=36.60 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=20.6
Q ss_pred EeecccCCCCCCccccCCCCCcEEEccCCccc
Q 044860 107 SFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLS 138 (279)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (279)
+|++|+|...-+..|..+.+|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35667776555555666777777777776554
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.11 E-value=69 Score=35.02 Aligned_cols=32 Identities=25% Similarity=0.164 Sum_probs=25.4
Q ss_pred EcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 180 SLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 180 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
||++|.+....+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46788887777778888888888888888764
Done!