Query 044860
Match_columns 279
No_of_seqs 229 out of 3356
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 12:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 8.9E-40 3.1E-44 270.5 24.4 265 8-278 4-276 (313)
2 4fcg_A Uncharacterized protein 100.0 3.4E-37 1.2E-41 256.5 18.1 269 4-278 21-309 (328)
3 3rgz_A Protein brassinosteroid 100.0 9.2E-35 3.2E-39 267.2 23.0 267 3-277 5-325 (768)
4 4eco_A Uncharacterized protein 100.0 5.8E-35 2E-39 263.2 14.0 264 6-277 26-409 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 2.1E-33 7.1E-38 258.3 15.4 264 5-277 264-651 (876)
6 1ogq_A PGIP-2, polygalacturona 100.0 7.3E-32 2.5E-36 223.0 16.0 223 52-278 75-299 (313)
7 3rgz_A Protein brassinosteroid 100.0 8.3E-31 2.8E-35 241.0 21.2 226 52-278 417-712 (768)
8 2z66_A Variable lymphocyte rec 100.0 2.1E-30 7.3E-35 213.6 17.6 238 39-278 5-256 (306)
9 3zyi_A Leucine-rich repeat-con 100.0 4.8E-29 1.6E-33 216.3 21.2 224 52-278 74-298 (452)
10 3v47_A TOLL-like receptor 5B a 100.0 4.9E-29 1.7E-33 216.4 20.3 134 53-186 30-166 (455)
11 2z80_A TOLL-like receptor 2, v 100.0 6.4E-30 2.2E-34 214.9 12.4 244 33-278 22-309 (353)
12 3zyj_A Leucine-rich repeat-con 100.0 1.6E-28 5.3E-33 212.3 20.2 224 52-278 63-287 (440)
13 2o6q_A Variable lymphocyte rec 100.0 3.9E-28 1.3E-32 196.6 20.9 218 39-261 3-220 (270)
14 1ozn_A Reticulon 4 receptor; N 100.0 4.6E-28 1.6E-32 197.7 21.3 210 52-262 31-241 (285)
15 3v47_A TOLL-like receptor 5B a 100.0 1.5E-28 5.1E-33 213.3 19.5 114 165-278 290-403 (455)
16 3oja_B Anopheles plasmodium-re 100.0 2.2E-28 7.4E-33 219.0 19.4 223 53-278 51-332 (597)
17 1xku_A Decorin; proteoglycan, 100.0 1.2E-27 4E-32 199.3 22.3 230 40-277 30-270 (330)
18 3o6n_A APL1; leucine-rich repe 100.0 2.5E-28 8.5E-33 207.9 17.9 223 53-278 45-326 (390)
19 1ozn_A Reticulon 4 receptor; N 100.0 5.9E-28 2E-32 197.1 19.2 219 56-278 14-233 (285)
20 2ft3_A Biglycan; proteoglycan, 100.0 9E-28 3.1E-32 200.2 19.7 221 40-266 32-284 (332)
21 2id5_A Lingo-1, leucine rich r 100.0 1E-27 3.5E-32 209.3 20.5 226 52-278 55-328 (477)
22 2id5_A Lingo-1, leucine rich r 100.0 1.3E-27 4.3E-32 208.7 20.0 226 52-278 31-280 (477)
23 4fcg_A Uncharacterized protein 100.0 2.1E-27 7.1E-32 197.5 17.8 204 52-260 103-315 (328)
24 3t6q_A CD180 antigen; protein- 100.0 3.8E-27 1.3E-31 211.5 19.5 225 52-277 300-554 (606)
25 3t6q_A CD180 antigen; protein- 99.9 1.5E-26 5E-31 207.7 21.4 224 54-278 255-508 (606)
26 4eco_A Uncharacterized protein 99.9 1.6E-27 5.4E-32 214.8 12.8 223 51-278 204-465 (636)
27 1xku_A Decorin; proteoglycan, 99.9 5.1E-26 1.7E-30 189.4 20.5 204 51-261 74-278 (330)
28 2z66_A Variable lymphocyte rec 99.9 2.3E-26 7.9E-31 189.5 17.6 218 56-278 10-231 (306)
29 3o6n_A APL1; leucine-rich repe 99.9 3.5E-26 1.2E-30 194.7 18.7 220 53-278 69-347 (390)
30 3zyj_A Leucine-rich repeat-con 99.9 4.7E-26 1.6E-30 196.8 19.6 207 51-259 86-292 (440)
31 1ziw_A TOLL-like receptor 3; i 99.9 4.2E-26 1.4E-30 207.3 20.0 224 53-277 25-303 (680)
32 3zyi_A Leucine-rich repeat-con 99.9 8.1E-26 2.8E-30 196.0 20.5 208 51-260 97-304 (452)
33 2z62_A TOLL-like receptor 4, v 99.9 3.7E-26 1.3E-30 185.5 16.9 210 52-263 27-241 (276)
34 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-26 1.1E-30 212.6 18.3 94 70-163 66-161 (844)
35 4g8a_A TOLL-like receptor 4; l 99.9 8.5E-26 2.9E-30 203.4 20.2 107 53-160 52-158 (635)
36 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-25 5.2E-30 186.7 20.1 225 50-278 75-328 (332)
37 2o6q_A Variable lymphocyte rec 99.9 3E-25 1E-29 179.6 20.7 197 78-278 17-213 (270)
38 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-25 6E-30 203.2 21.2 225 53-278 381-617 (680)
39 3oja_B Anopheles plasmodium-re 99.9 9E-26 3.1E-30 202.1 18.7 220 53-278 75-353 (597)
40 3j0a_A TOLL-like receptor 5; m 99.9 8E-26 2.7E-30 209.9 18.9 224 53-277 73-369 (844)
41 3vq2_A TLR4, TOLL-like recepto 99.9 7.7E-26 2.6E-30 203.0 18.1 201 75-277 348-552 (606)
42 2z62_A TOLL-like receptor 4, v 99.9 1.7E-25 5.7E-30 181.7 17.7 216 58-278 12-232 (276)
43 3vq2_A TLR4, TOLL-like recepto 99.9 7.3E-26 2.5E-30 203.2 16.8 221 51-278 305-529 (606)
44 3rfs_A Internalin B, repeat mo 99.9 1.2E-25 4.1E-30 182.1 16.1 209 52-272 40-248 (272)
45 3oja_A Leucine-rich immune mol 99.9 3E-26 1E-30 200.2 12.7 212 52-278 33-245 (487)
46 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-25 4.5E-30 198.0 16.4 104 54-161 22-126 (520)
47 1wwl_A Monocyte differentiatio 99.9 5.3E-27 1.8E-31 193.8 6.9 217 55-278 65-304 (312)
48 2z80_A TOLL-like receptor 2, v 99.9 8.6E-26 2.9E-30 189.7 13.2 213 50-263 73-318 (353)
49 3o53_A Protein LRIM1, AGAP0063 99.9 5.6E-26 1.9E-30 188.1 11.2 217 53-276 34-268 (317)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.7E-25 1.6E-29 196.2 17.3 108 53-164 52-160 (562)
51 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-25 8.9E-30 197.3 15.5 224 53-277 26-258 (549)
52 4ecn_A Leucine-rich repeat pro 99.9 1.5E-25 5.2E-30 206.3 14.2 222 51-278 446-705 (876)
53 1p9a_G Platelet glycoprotein I 99.9 2E-24 6.9E-29 176.4 19.1 201 52-260 9-209 (290)
54 1wwl_A Monocyte differentiatio 99.9 1E-25 3.6E-30 186.1 11.4 204 52-261 94-311 (312)
55 1p9a_G Platelet glycoprotein I 99.9 1.6E-24 5.6E-29 176.9 18.1 198 73-278 6-203 (290)
56 2z63_A TOLL-like receptor 4, v 99.9 9.4E-25 3.2E-29 194.5 16.8 221 53-278 282-526 (570)
57 2xwt_C Thyrotropin receptor; s 99.9 2.9E-24 9.7E-29 170.7 17.4 193 78-277 32-233 (239)
58 2z7x_B TOLL-like receptor 1, v 99.9 8.5E-25 2.9E-29 192.8 15.8 85 51-138 43-128 (520)
59 3m19_A Variable lymphocyte rec 99.9 3.1E-24 1E-28 171.8 17.3 191 40-237 4-194 (251)
60 2z81_A CD282 antigen, TOLL-lik 99.9 7.1E-25 2.4E-29 194.5 14.3 135 50-184 47-182 (549)
61 4fmz_A Internalin; leucine ric 99.9 1.1E-23 3.9E-28 176.3 20.8 214 50-277 85-318 (347)
62 4fmz_A Internalin; leucine ric 99.9 6.1E-24 2.1E-28 178.0 18.8 214 51-278 108-341 (347)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.2E-24 7.4E-29 191.9 16.9 86 50-138 73-159 (562)
64 2xwt_C Thyrotropin receptor; s 99.9 4E-24 1.4E-28 169.9 15.9 198 52-256 30-236 (239)
65 2z63_A TOLL-like receptor 4, v 99.9 1.7E-24 5.9E-29 192.8 15.1 220 52-277 27-332 (570)
66 3o53_A Protein LRIM1, AGAP0063 99.9 6.4E-25 2.2E-29 181.7 9.6 208 51-264 56-281 (317)
67 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.6E-28 168.5 18.8 199 58-263 24-222 (272)
68 4glp_A Monocyte differentiatio 99.9 2.6E-24 8.8E-29 177.6 12.5 218 54-278 65-302 (310)
69 3m19_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 164.7 18.6 181 77-261 14-194 (251)
70 1o6v_A Internalin A; bacterial 99.9 7.5E-23 2.6E-27 178.0 20.0 209 51-278 175-383 (466)
71 3oja_A Leucine-rich immune mol 99.9 3E-24 1E-28 187.5 10.2 212 51-277 56-269 (487)
72 1h6u_A Internalin H; cell adhe 99.9 5.4E-23 1.8E-27 169.4 16.7 192 52-260 40-231 (308)
73 1o6v_A Internalin A; bacterial 99.9 1.9E-22 6.7E-27 175.4 19.3 212 52-278 67-317 (466)
74 3bz5_A Internalin-J, INLJ; leu 99.9 4.1E-22 1.4E-26 172.6 20.5 196 53-275 64-259 (457)
75 2ca6_A RAN GTPase-activating p 99.9 1E-24 3.4E-29 185.4 3.3 227 52-278 31-311 (386)
76 1h6u_A Internalin H; cell adhe 99.9 3E-22 1E-26 165.0 16.9 189 73-278 37-225 (308)
77 2ast_B S-phase kinase-associat 99.9 1.8E-24 6.1E-29 180.4 3.2 203 53-256 70-282 (336)
78 3cvr_A Invasion plasmid antige 99.9 1.2E-22 4.2E-27 179.3 14.0 208 33-271 35-255 (571)
79 4glp_A Monocyte differentiatio 99.9 1.2E-22 4E-27 167.6 12.9 202 53-260 91-308 (310)
80 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-21 5.5E-26 168.9 20.2 200 53-278 42-241 (457)
81 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.7E-28 175.1 6.2 233 39-278 35-280 (336)
82 2o6s_A Variable lymphocyte rec 99.9 1.1E-21 3.8E-26 152.4 15.1 186 39-247 5-190 (208)
83 2o6s_A Variable lymphocyte rec 99.9 9.6E-22 3.3E-26 152.8 14.1 181 80-271 10-190 (208)
84 3goz_A Leucine-rich repeat-con 99.9 2E-23 6.9E-28 175.8 3.7 227 52-278 21-292 (362)
85 4g8a_A TOLL-like receptor 4; l 99.9 2.3E-21 7.7E-26 174.5 16.1 213 59-276 37-255 (635)
86 3goz_A Leucine-rich repeat-con 99.9 7.3E-23 2.5E-27 172.4 4.9 222 57-278 2-261 (362)
87 4ay9_X Follicle-stimulating ho 99.9 9.2E-21 3.1E-25 158.9 17.3 233 40-278 8-254 (350)
88 1z7x_W Ribonuclease inhibitor; 99.9 1.3E-23 4.5E-28 182.4 -1.5 205 74-278 167-406 (461)
89 2ca6_A RAN GTPase-activating p 99.9 4.4E-23 1.5E-27 175.3 1.6 214 50-263 57-320 (386)
90 3g06_A SSPH2 (leucine-rich rep 99.9 5.7E-20 2E-24 164.1 20.7 197 54-278 62-292 (622)
91 4ay9_X Follicle-stimulating ho 99.8 1.4E-20 4.6E-25 157.8 14.6 216 56-276 12-232 (350)
92 1h6t_A Internalin B; cell adhe 99.8 1.7E-20 5.9E-25 153.1 14.3 169 53-236 46-214 (291)
93 1z7x_W Ribonuclease inhibitor; 99.8 1.3E-22 4.4E-27 176.2 1.1 224 54-277 86-348 (461)
94 2v70_A SLIT-2, SLIT homolog 2 99.8 6.9E-20 2.4E-24 143.5 15.5 152 80-235 14-166 (220)
95 1jl5_A Outer protein YOPM; leu 99.8 4.2E-21 1.4E-25 166.1 8.6 184 54-260 35-251 (454)
96 3e6j_A Variable lymphocyte rec 99.8 1.8E-19 6E-24 142.1 16.7 164 33-213 11-174 (229)
97 2v9t_B SLIT homolog 2 protein 99.8 1E-19 3.4E-24 142.6 15.1 152 80-235 14-165 (220)
98 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-19 7.1E-24 160.5 18.7 199 51-272 79-310 (622)
99 1jl5_A Outer protein YOPM; leu 99.8 2.7E-19 9.3E-24 154.8 18.0 203 52-278 152-404 (454)
100 1m9s_A Internalin B; cell inva 99.8 7.8E-20 2.7E-24 162.9 14.6 171 52-237 42-212 (605)
101 2xot_A Amphoterin-induced prot 99.8 5.2E-20 1.8E-24 154.9 12.5 176 56-235 21-202 (361)
102 2v9t_B SLIT homolog 2 protein 99.8 2.6E-19 9E-24 140.2 14.9 152 57-212 15-166 (220)
103 2xot_A Amphoterin-induced prot 99.8 1.9E-19 6.6E-24 151.4 14.8 177 80-260 21-203 (361)
104 1h6t_A Internalin B; cell adhe 99.8 5.4E-19 1.9E-23 144.3 15.1 175 73-262 42-216 (291)
105 1m9s_A Internalin B; cell inva 99.8 4.1E-19 1.4E-23 158.3 15.4 189 58-263 26-214 (605)
106 3e6j_A Variable lymphocyte rec 99.8 1.1E-18 3.7E-23 137.5 16.1 153 79-236 21-173 (229)
107 4ezg_A Putative uncharacterize 99.8 5.2E-19 1.8E-23 136.1 13.3 154 98-260 41-195 (197)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 6.9E-19 2.4E-23 137.8 14.1 158 103-263 13-170 (220)
109 3cvr_A Invasion plasmid antige 99.8 2E-18 6.8E-23 152.5 18.3 172 78-278 60-238 (571)
110 4b8c_D Glucose-repressible alc 99.8 1.1E-20 3.9E-25 172.1 1.3 225 6-240 128-359 (727)
111 4ezg_A Putative uncharacterize 99.8 1.5E-18 5.2E-23 133.5 12.4 152 76-235 43-194 (197)
112 1xeu_A Internalin C; cellular 99.8 2.2E-19 7.7E-24 144.4 7.9 168 54-237 20-187 (263)
113 1dce_A Protein (RAB geranylger 99.8 2.6E-21 8.9E-26 171.4 -6.2 197 74-277 346-567 (567)
114 1xeu_A Internalin C; cellular 99.8 1.8E-18 6.1E-23 139.1 8.9 147 53-213 41-187 (263)
115 1w8a_A SLIT protein; signaling 99.7 4.6E-17 1.6E-21 124.7 12.2 129 104-236 11-140 (192)
116 3sb4_A Hypothetical leucine ri 99.7 2.1E-17 7.2E-22 137.2 9.4 102 173-276 225-327 (329)
117 2je0_A Acidic leucine-rich nuc 99.7 3.4E-17 1.2E-21 120.2 8.9 128 149-278 16-148 (149)
118 2ell_A Acidic leucine-rich nuc 99.7 7.4E-17 2.5E-21 120.8 10.8 134 125-261 24-162 (168)
119 3ogk_B Coronatine-insensitive 99.7 1.3E-18 4.4E-23 155.6 0.6 222 54-277 271-520 (592)
120 1dce_A Protein (RAB geranylger 99.7 6.7E-20 2.3E-24 162.4 -8.4 194 52-253 348-567 (567)
121 1w8a_A SLIT protein; signaling 99.7 2.2E-16 7.6E-21 120.8 12.0 132 80-215 11-143 (192)
122 4b8c_D Glucose-repressible alc 99.7 5.8E-18 2E-22 154.3 3.6 181 68-259 215-404 (727)
123 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.7E-21 118.1 11.5 107 77-186 24-132 (168)
124 2o6r_A Variable lymphocyte rec 99.7 4.9E-16 1.7E-20 117.3 13.3 132 128-263 10-141 (177)
125 2wfh_A SLIT homolog 2 protein 99.7 3.9E-16 1.3E-20 119.5 12.8 127 104-235 13-139 (193)
126 2je0_A Acidic leucine-rich nuc 99.7 2.2E-16 7.4E-21 115.8 8.4 127 125-254 17-148 (149)
127 3ogk_B Coronatine-insensitive 99.7 1E-17 3.4E-22 149.8 1.0 103 54-158 139-251 (592)
128 2wfh_A SLIT homolog 2 protein 99.6 3.1E-15 1.1E-19 114.5 13.3 127 80-211 13-139 (193)
129 2o6r_A Variable lymphocyte rec 99.6 5.7E-15 1.9E-19 111.4 13.2 127 57-187 11-137 (177)
130 4fdw_A Leucine rich hypothetic 99.6 2.2E-14 7.4E-19 121.9 17.0 214 54-277 158-377 (401)
131 1a9n_A U2A', U2A'; complex (nu 99.6 2.9E-15 1E-19 112.9 9.1 136 120-261 14-155 (176)
132 1a9n_A U2A', U2A'; complex (nu 99.6 2.5E-15 8.4E-20 113.4 8.6 133 96-235 14-153 (176)
133 2p1m_B Transport inhibitor res 99.6 8.9E-17 3.1E-21 143.7 0.5 109 52-160 104-221 (594)
134 4fdw_A Leucine rich hypothetic 99.6 9E-14 3.1E-18 118.1 17.5 213 54-278 136-353 (401)
135 1ds9_A Outer arm dynein; leuci 99.6 3.5E-17 1.2E-21 126.0 -5.1 132 120-259 43-185 (198)
136 1ds9_A Outer arm dynein; leuci 99.6 4.1E-17 1.4E-21 125.6 -4.8 131 140-276 39-180 (198)
137 2p1m_B Transport inhibitor res 99.6 1.2E-16 4.2E-21 142.8 -2.5 63 197-259 455-519 (594)
138 3sb4_A Hypothetical leucine ri 99.6 5E-14 1.7E-18 116.8 13.1 104 148-253 224-328 (329)
139 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 102.5 11.4 105 127-235 11-115 (170)
140 3un9_A NLR family member X1; l 99.5 1.2E-15 3.9E-20 128.5 -2.8 160 77-236 72-253 (372)
141 2r9u_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 100.7 11.5 104 128-235 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.5 5.6E-13 1.9E-17 99.8 11.1 104 56-163 12-115 (170)
143 2r9u_A Variable lymphocyte rec 99.4 8.7E-13 3E-17 99.1 11.1 104 56-163 15-118 (174)
144 3un9_A NLR family member X1; l 99.4 1.1E-14 3.7E-19 122.6 -4.9 170 100-269 71-262 (372)
145 2ifg_A High affinity nerve gro 99.3 2.1E-11 7E-16 101.8 10.5 103 129-235 12-116 (347)
146 2ifg_A High affinity nerve gro 99.2 3.9E-11 1.3E-15 100.1 9.7 101 59-163 14-116 (347)
147 4fs7_A Uncharacterized protein 99.1 3.1E-09 1.1E-13 90.1 15.5 102 169-275 292-393 (394)
148 2ra8_A Uncharacterized protein 99.1 1.1E-10 3.7E-15 97.6 6.1 182 52-236 106-321 (362)
149 2ra8_A Uncharacterized protein 99.1 1.2E-10 4.2E-15 97.3 5.6 188 77-268 107-329 (362)
150 4gt6_A Cell surface protein; l 99.0 1.8E-08 6E-13 85.5 17.6 104 170-277 261-364 (394)
151 4fs7_A Uncharacterized protein 99.0 1E-08 3.5E-13 86.9 15.0 214 51-277 160-373 (394)
152 4gt6_A Cell surface protein; l 98.9 1.3E-07 4.3E-12 80.2 17.6 130 141-277 256-385 (394)
153 4h09_A Hypothetical leucine ri 98.8 5.3E-07 1.8E-11 75.9 18.1 105 170-277 236-340 (379)
154 3rw6_A Nuclear RNA export fact 98.6 1.5E-08 5E-13 80.7 2.3 81 195-276 167-257 (267)
155 4h09_A Hypothetical leucine ri 98.6 4.2E-06 1.4E-10 70.3 17.3 146 120-271 212-357 (379)
156 1io0_A Tropomodulin; LRR prote 98.6 9E-09 3.1E-13 77.8 0.6 90 170-259 61-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.6 3.9E-08 1.3E-12 74.3 3.9 111 168-278 30-159 (185)
158 3e4g_A ATP synthase subunit S, 98.5 6.2E-08 2.1E-12 71.8 3.3 86 174-259 61-153 (176)
159 3e4g_A ATP synthase subunit S, 98.4 1.4E-07 4.9E-12 69.8 2.8 81 198-278 61-147 (176)
160 3rw6_A Nuclear RNA export fact 98.3 5.6E-07 1.9E-11 71.5 5.6 140 39-180 76-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 4.2E-05 1.4E-09 57.7 4.7 112 147-258 38-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00012 4.2E-09 55.1 2.1 40 148-187 68-111 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.001 3.5E-08 46.6 6.1 56 178-235 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0029 9.9E-08 44.3 5.8 36 126-162 32-67 (130)
165 2lz0_A Uncharacterized protein 80.6 5 0.00017 26.1 5.8 44 188-232 10-53 (100)
166 2lz0_A Uncharacterized protein 60.1 18 0.00061 23.4 4.8 40 70-110 13-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.9e-40 Score=270.47 Aligned_cols=265 Identities=34% Similarity=0.554 Sum_probs=233.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCccccCCCCCCCCCcc--cceeeeCCCC--CceEEEEecCCCccc--ccCCccCCCCCCCE
Q 044860 8 ITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCN--WTGVTCDVHS--HKVAVLNVSGLNLTG--TIPSQLGNLSSLQS 81 (279)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~--~~l~~l~l~~~~~~~--~~~~~~~~l~~L~~ 81 (279)
..+|..||++||.++. +|. .++ +|..+.++|. |.|+.|.... .+|+.|+++++.+.+ .+|..+.++++|++
T Consensus 4 ~~~~~~aL~~~k~~~~-~~~-~l~-~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 4 NPQDKQALLQIKKDLG-NPT-TLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CHHHHHHHHHHHHHTT-CCG-GGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CHHHHHHHHHHHHhcC-Ccc-ccc-CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 4679999999999996 665 666 9988888998 9999998653 699999999999998 88999999999999
Q ss_pred EEccC-CcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccc
Q 044860 82 LDLSF-NQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQN 160 (279)
Q Consensus 82 L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 160 (279)
|++++ |.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSS
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCC
Confidence 99995 89988899999999999999999999998999999999999999999999987777776 88999999999999
Q ss_pred eecccCCccccCCC-CCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCC
Q 044860 161 MFHGGIPSTLSNCT-YLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIP 239 (279)
Q Consensus 161 ~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 239 (279)
.+.+..|..+..++ +|++|++++|.+.+..|..+..+. |+.|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus 160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 99888898898887 999999999999878888888776 9999999998888888888888888888888888875555
Q ss_pred ccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 240 QELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 240 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
. +..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 239 ~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls 276 (313)
T 1ogq_A 239 K-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp G-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred c-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECc
Confidence 4 6777888888888888888888888888888888764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.4e-37 Score=256.52 Aligned_cols=269 Identities=22% Similarity=0.287 Sum_probs=241.7
Q ss_pred CCCCChhHHHHHHHHHHhcCCCCCccccCCC----CCCCCCcccceeeeC--------CCCCceEEEEecCCCcccccCC
Q 044860 4 NTGTITTDRDALLALKAHITHDPTNFFAKNW----NTSTPVCNWTGVTCD--------VHSHKVAVLNVSGLNLTGTIPS 71 (279)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w----~~~~~~~~~~~~~~~--------~~~~~l~~l~l~~~~~~~~~~~ 71 (279)
..+...+|..+|++||..+..++..|.. .| .....+|.|.|+.|. ....+++.|+++++.+. .+|.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 3455678999999999999778888887 88 456788999999984 23468999999999998 7788
Q ss_pred ccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhh------
Q 044860 72 QLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANI------ 145 (279)
Q Consensus 72 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------ 145 (279)
.+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 8889999999999999998 88999999999999999999999 889999999999999999988877888766
Q ss_pred --hcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCC
Q 044860 146 --CSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAE 223 (279)
Q Consensus 146 --~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 223 (279)
+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. ..|..+..+++|+.|++++|.+.+.+|..+..+++
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 235999999999999998 78888999999999999999995 45667899999999999999999999999999999
Q ss_pred CCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 224 LELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 224 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..++++++|+.+.+.
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 9999999999988999999999999999999999999999999999999998763
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.2e-35 Score=267.21 Aligned_cols=267 Identities=30% Similarity=0.446 Sum_probs=176.9
Q ss_pred CCCCCChhHHHHHHHHHHhcCCCCCccccCCCCCCCCCcccceeeeCCCCCceEEEEecCCCcccc---cC---------
Q 044860 3 ANTGTITTDRDALLALKAHITHDPTNFFAKNWNTSTPVCNWTGVTCDVHSHKVAVLNVSGLNLTGT---IP--------- 70 (279)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~--------- 70 (279)
+.++..++|..||++||+.+. ||. .++ +|..+.++|.|.|+.|. ..+|+.|+++++.+.+. +|
T Consensus 5 ~~~~~~~~~~~all~~k~~~~-~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLP-DKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCS-CTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred ccccCCHHHHHHHHHHHhhCC-Ccc-ccc-CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 444456789999999999998 777 777 99888899999999998 34999999999887764 22
Q ss_pred --------------CccCCCCCCCEEEccCCcccccCCc--cccCCCCCcEEEeecccCCCCCCccc-cCCCCCcEEEcc
Q 044860 71 --------------SQLGNLSSLQSLDLSFNQLSGSIPS--AIFTTYTLKYVSFCRNQLSGAFPSFI-FNKSSLQHLDFS 133 (279)
Q Consensus 71 --------------~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~ 133 (279)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+ .++++|++|+++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 5678889999999999998887777 88889999999999988877666655 677778888888
Q ss_pred CCccccccChhh--hcCCCC----------------------CcEEecccceecccCCccccCCCCCcEEEccccccccc
Q 044860 134 FNTLSGEIPANI--CSNLPF----------------------LEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGA 189 (279)
Q Consensus 134 ~~~~~~~~~~~~--~~~l~~----------------------L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 189 (279)
+|.+.+..+... +.++++ |++|++++|.+.+..|. +..+++|++|++++|.+.+.
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 777764443331 234444 44444444444443443 55666666666666666555
Q ss_pred CchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCC-CCCCEEEccCcccccccchhhhc
Q 044860 190 IPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNL-SRLEILQLSDNFLTGIISSSIFK 268 (279)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
.|..+..+++|+.|++++|.+.+..|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..++.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 5666666666666666666555433322 34444444444444444444444332 55555555555555555555555
Q ss_pred ccccceeee
Q 044860 269 LLLSIEFEI 277 (279)
Q Consensus 269 l~~L~~l~l 277 (279)
+++|++|++
T Consensus 317 l~~L~~L~L 325 (768)
T 3rgz_A 317 CSLLESLAL 325 (768)
T ss_dssp CTTCCEEEC
T ss_pred CCCccEEEC
Confidence 555555554
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-35 Score=263.16 Aligned_cols=264 Identities=20% Similarity=0.304 Sum_probs=200.4
Q ss_pred CCChhHHHHHHHHHHhcCCCCCcccc-------CCCCCCCCCccc---ceeeeCCCCCceEEEEecCCCcccccCCccCC
Q 044860 6 GTITTDRDALLALKAHITHDPTNFFA-------KNWNTSTPVCNW---TGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGN 75 (279)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~w~~~~~~~~~---~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~ 75 (279)
+....|..||.+++.++.+. .+... .+|..+.++|.| .|+.|+..+ +|+.|+++++++.|.+|..+++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~-~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~-~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGK-NWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNG-RVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-GCCCCC------CCCCCSSCGGGTTCCTTEEECTTC-CEEEEECTTSCCEEEECGGGGG
T ss_pred hhHHHHHHHHHHHHHHcCCC-CcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCC-CEEEEEecCcccCCcCChHHhc
Confidence 34457999999999998744 33322 279999999999 999998764 9999999999999999999999
Q ss_pred CCCCCEEEccCCcc------------------------------------------------------------------
Q 044860 76 LSSLQSLDLSFNQL------------------------------------------------------------------ 89 (279)
Q Consensus 76 l~~L~~L~l~~n~~------------------------------------------------------------------ 89 (279)
+++|++|++++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999988843
Q ss_pred ------------cccCCccccCCCCCcEEEeecccCCCC-----------------CCcccc--CCCCCcEEEccCCccc
Q 044860 90 ------------SGSIPSAIFTTYTLKYVSFCRNQLSGA-----------------FPSFIF--NKSSLQHLDFSFNTLS 138 (279)
Q Consensus 90 ------------~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~ 138 (279)
++ +|..++.+++|++|++++|.+++. +|+.+. .+++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 33 677888999999999999999875 888888 8999999999999988
Q ss_pred cccChhhhcCCCCCcEEecccce-ecc-cCCccccCC------CCCcEEEcccccccccCch--hhcCCCCCcEEEccCc
Q 044860 139 GEIPANICSNLPFLEYISLSQNM-FHG-GIPSTLSNC------TYLQKLSLSLNDFWGAIPK--EIGNLTKLKELYLGRN 208 (279)
Q Consensus 139 ~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n 208 (279)
+.+|..+ .++++|++|++++|. +.+ .+|..+..+ ++|++|++++|.+. .+|. .+..+++|+.|++++|
T Consensus 263 ~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 263 TKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred ccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 8888776 788999999999887 776 566666554 78888888888775 6666 7777778888888888
Q ss_pred cccccCchhccCCCCCCEEeccCCcccccCCccccCCCC-CCEEEccCcccccccchhhhccc--ccceeee
Q 044860 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSR-LEILQLSDNFLTGIISSSIFKLL--LSIEFEI 277 (279)
Q Consensus 209 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~l~l 277 (279)
.+++.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..+. +|++|++
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence 7776666 5666666666666666665 55555555555 666666666555 3444333322 4444443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-33 Score=258.33 Aligned_cols=264 Identities=20% Similarity=0.294 Sum_probs=211.3
Q ss_pred CCCChhHHHHHHHHHHhcCCCCCccccCCCCCCCCC--ccc------------ceeeeCCCCCceEEEEecCCCcccccC
Q 044860 5 TGTITTDRDALLALKAHITHDPTNFFAKNWNTSTPV--CNW------------TGVTCDVHSHKVAVLNVSGLNLTGTIP 70 (279)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~~~~~--~~~------------~~~~~~~~~~~l~~l~l~~~~~~~~~~ 70 (279)
++...+|..||++||.++. +|.|....+| ...++ |.| .|+.|... .+|+.|+|+++++.|.+|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~~W~~~~~~-~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GKNWRYYSGT-INNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GGGCCCCCSS-CSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEEC
T ss_pred cccchHHHHHHHHHHHHcC-CCCCCcCCCc-ccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCc
Confidence 3445689999999999996 5532222122 12245 999 99999874 499999999999999999
Q ss_pred CccCCCCCCCEEEc-cCCccccc---------------------------------------------------------
Q 044860 71 SQLGNLSSLQSLDL-SFNQLSGS--------------------------------------------------------- 92 (279)
Q Consensus 71 ~~~~~l~~L~~L~l-~~n~~~~~--------------------------------------------------------- 92 (279)
..++++++|++|++ ++|.+.|.
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 66644332
Q ss_pred -------------------CCccccCCCCCcEEEeecccCCC-----------------CCCcccc--CCCCCcEEEccC
Q 044860 93 -------------------IPSAIFTTYTLKYVSFCRNQLSG-----------------AFPSFIF--NKSSLQHLDFSF 134 (279)
Q Consensus 93 -------------------~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~ 134 (279)
+|..+..+++|++|+|++|.+++ .+|+.+. .+++|++|++++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 67788899999999999999997 3888887 999999999999
Q ss_pred CccccccChhhhcCCCCCcEEecccce-ecc-cCCccccCC-------CCCcEEEcccccccccCch--hhcCCCCCcEE
Q 044860 135 NTLSGEIPANICSNLPFLEYISLSQNM-FHG-GIPSTLSNC-------TYLQKLSLSLNDFWGAIPK--EIGNLTKLKEL 203 (279)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~~-------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L 203 (279)
|.+.+.+|..+ .++++|++|++++|. +.+ .+|..+..+ ++|++|++++|.+. .+|. .+..+++|+.|
T Consensus 501 N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 501 CPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp CTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 99888888776 889999999999997 776 566555444 48999999999886 7777 78888999999
Q ss_pred EccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCC-CCEEEccCcccccccchhhhcccc--cceeee
Q 044860 204 YLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSR-LEILQLSDNFLTGIISSSIFKLLL--SIEFEI 277 (279)
Q Consensus 204 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~l~l 277 (279)
++++|.++ .+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..+.. |+.|++
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence 99999887 666 7888888888888888887 77777888888 888888888887 55655554433 666655
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=7.3e-32 Score=223.01 Aligned_cols=223 Identities=28% Similarity=0.384 Sum_probs=206.4
Q ss_pred CCceEEEEecC-CCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 52 SHKVAVLNVSG-LNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 52 ~~~l~~l~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
.+++++|++++ +.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46899999995 89998999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCccccccChhhhcCCC-CCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcc
Q 044860 131 DFSFNTLSGEIPANICSNLP-FLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNG 209 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 209 (279)
++++|.+.+.+|..+ ..++ +|++|++++|.+.+..|..+..+. |++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 155 ~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 155 TFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp ECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred ECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 999999998888888 6676 999999999999988899998887 9999999999988899999999999999999999
Q ss_pred ccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 210 LLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 210 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+++..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++.
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence 9866555 788899999999999999899999999999999999999999999876 888888887753
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=8.3e-31 Score=240.96 Aligned_cols=226 Identities=38% Similarity=0.550 Sum_probs=177.3
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 496 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence 34677777777777767777777777777777777777777777777777777777777777777777777777888888
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhh-----------------
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI----------------- 194 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----------------- 194 (279)
+++|.+.+.+|..+ ..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+
T Consensus 497 L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 497 LSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp CCSSCCCSCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred ccCCccCCcCChHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 88887776666665 677888888888888777777778888888888888887765554432
Q ss_pred -----------------------------------------------------cCCCCCcEEEccCccccccCchhccCC
Q 044860 195 -----------------------------------------------------GNLTKLKELYLGRNGLLGEIPREFGNL 221 (279)
Q Consensus 195 -----------------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~l~~~ 221 (279)
..+++|+.|++++|.+++.+|..+..+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 224567888888888888888888888
Q ss_pred CCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 222 AELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 222 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+.|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|++|+++
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 888889999998888888888888889999999999988888888888888888875
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.1e-30 Score=213.64 Aligned_cols=238 Identities=21% Similarity=0.274 Sum_probs=202.9
Q ss_pred CCcccceeeeCC---------CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCccccc--CCccccCCCCCcEEE
Q 044860 39 PVCNWTGVTCDV---------HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGS--IPSAIFTTYTLKYVS 107 (279)
Q Consensus 39 ~~~~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~ 107 (279)
..|.|.++.|.. ..+++++|++++|.+....+..|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 347788888864 235899999999999865556689999999999999988732 356677899999999
Q ss_pred eecccCCCCCCccccCCCCCcEEEccCCccccccCh-hhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccc
Q 044860 108 FCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPA-NICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDF 186 (279)
Q Consensus 108 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 186 (279)
+++|.+. .++..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 9999988 57777889999999999999998 4443 4558899999999999998877888888999999999999988
Q ss_pred cc-cCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchh
Q 044860 187 WG-AIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSS 265 (279)
Q Consensus 187 ~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 265 (279)
.+ ..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 65 57778888999999999999998877888889999999999999998766767888999999999999999988888
Q ss_pred hhccc-ccceeeec
Q 044860 266 IFKLL-LSIEFEIF 278 (279)
Q Consensus 266 ~~~l~-~L~~l~l~ 278 (279)
+..++ +|++|+++
T Consensus 243 ~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 243 LQHFPSSLAFLNLT 256 (306)
T ss_dssp CCCCCTTCCEEECT
T ss_pred HHhhhccCCEEEcc
Confidence 88885 89998874
No 9
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.8e-29 Score=216.29 Aligned_cols=224 Identities=19% Similarity=0.181 Sum_probs=201.4
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35899999999999988899999999999999999999977888999999999999999999977777788999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccc-eecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQN-MFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
+++|.+. .++...|.++++|++|++++| .+....+..+..+++|++|++++|.+.+. | .+..+++|+.|++++|.+
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence 9999998 788877799999999999984 44444455788999999999999999544 4 467889999999999999
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 98889999999999999999999998888899999999999999999998888888999999999874
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=4.9e-29 Score=216.37 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=74.7
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccC-CccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSI-PSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
+++++|++++|.+.+..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 46777777777776666666666666777766666654333 44556666666666666666655555566666666666
Q ss_pred ccCCccccccCh-hhhcCCCCCcEEecccceecccCCcc-ccCCCCCcEEEcccccc
Q 044860 132 FSFNTLSGEIPA-NICSNLPFLEYISLSQNMFHGGIPST-LSNCTYLQKLSLSLNDF 186 (279)
Q Consensus 132 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~ 186 (279)
+++|.+.+.++. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 666655432222 12244555555555555554333332 34444444444444433
No 11
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.4e-30 Score=214.94 Aligned_cols=244 Identities=20% Similarity=0.207 Sum_probs=196.7
Q ss_pred CCCCCCCCcccceeeeCC-----------CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCC
Q 044860 33 NWNTSTPVCNWTGVTCDV-----------HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTY 101 (279)
Q Consensus 33 ~w~~~~~~~~~~~~~~~~-----------~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 101 (279)
.|......|.|.++ |+. -.+++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..++
T Consensus 22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 45556677888776 431 235899999999999977777899999999999999999977788899999
Q ss_pred CCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccCh-hhhcCCCCCcEEecccc-eecccCCccccCCCCCcEE
Q 044860 102 TLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPA-NICSNLPFLEYISLSQN-MFHGGIPSTLSNCTYLQKL 179 (279)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L 179 (279)
+|++|++++|.+++..+..+..+++|++|++++|.+. .++. ..+.++++|++|++++| .+....+..+..+++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999999999655555889999999999999998 6776 55688999999999998 4665667788999999999
Q ss_pred EcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccC---------------------
Q 044860 180 SLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEI--------------------- 238 (279)
Q Consensus 180 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~--------------------- 238 (279)
++++|.+.+..+..+..+++|+.|++++|.+.......+..+++|++|++++|.+++..
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 99999998888888999999999999999886443334455788888888888876532
Q ss_pred ----------CccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 239 ----------PQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 239 ----------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
|..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEee
Confidence 3345678899999999999985444446888999988874
No 12
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=212.35 Aligned_cols=224 Identities=21% Similarity=0.213 Sum_probs=200.7
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35789999999999988888999999999999999999877778899999999999999999976667899999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccc-eecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQN-MFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
+++|.+. .++...|.++++|++|++.+| .+....+..+..+++|++|++++|.+. ..| .+..+++|+.|++++|.+
T Consensus 143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 9999998 778777799999999999984 444444557889999999999999995 444 467889999999999999
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
++..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence 98888999999999999999999998888899999999999999999998888888999999999874
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=3.9e-28 Score=196.61 Aligned_cols=218 Identities=26% Similarity=0.325 Sum_probs=190.6
Q ss_pred CCcccceeeeCCCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCC
Q 044860 39 PVCNWTGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFP 118 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 118 (279)
+.|.|.|..|.-.. ..+.++++++.+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++...+
T Consensus 3 ~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 3 ALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred ccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 56999988875433 5778999999998 4666554 689999999999986666789999999999999999986656
Q ss_pred ccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCC
Q 044860 119 SFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLT 198 (279)
Q Consensus 119 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 198 (279)
..+..+++|++|++++|.+. .++...+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 66788999999999999998 77877778999999999999999977778889999999999999999777777788999
Q ss_pred CCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccc
Q 044860 199 KLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 199 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 261 (279)
+|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999977777788999999999999999876667789999999999999998643
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4.6e-28 Score=197.72 Aligned_cols=210 Identities=21% Similarity=0.212 Sum_probs=169.9
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeeccc-CCCCCCccccCCCCCcEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQ-LSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L 130 (279)
.++++.|+++++.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4578888888888887766778888888888888888886667788888888888888886 665557778888888888
Q ss_pred EccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 131 DFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
++++|.+. .+++..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 88888887 55555557888888888888888766666678888888888888888666666678888888888888888
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccccc
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGII 262 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 262 (279)
++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++....
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 8777888888888888888888888655566888888888888888887543
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.5e-28 Score=213.30 Aligned_cols=114 Identities=26% Similarity=0.233 Sum_probs=79.3
Q ss_pred cCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccC
Q 044860 165 GIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN 244 (279)
Q Consensus 165 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~ 244 (279)
..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 34445556666777777777666666666667777777777777776666666777777777777777777666667777
Q ss_pred CCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 245 LSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 245 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+++|++|++++|++++..+..+..+++|++|+++
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 7777777777777776666666777777777653
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.2e-28 Score=219.05 Aligned_cols=223 Identities=21% Similarity=0.166 Sum_probs=147.3
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34566666666665444444556666666666666666555556666666666666666666555555666666666666
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccC----------------------
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAI---------------------- 190 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~---------------------- 190 (279)
++|.+. .+|..+|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 666666 555555566666666666666666555555666666666666665543221
Q ss_pred -------------------------------------chhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCc
Q 044860 191 -------------------------------------PKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANK 233 (279)
Q Consensus 191 -------------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 233 (279)
+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 2335566777888888888877777778888888888888888
Q ss_pred ccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 234 LQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 234 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+++ +|..+..+++|+.|++++|.+++ +|..+..+++|++|+++
T Consensus 290 l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 290 LVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLD 332 (597)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECC
T ss_pred CCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECC
Confidence 874 45556677888888888888874 56667788888887764
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.2e-27 Score=199.32 Aligned_cols=230 Identities=20% Similarity=0.250 Sum_probs=162.2
Q ss_pred CcccceeeeCC---------CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeec
Q 044860 40 VCNWTGVTCDV---------HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCR 110 (279)
Q Consensus 40 ~~~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 110 (279)
.|.|..+.|.. ..+.++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45677777652 236899999999999977777899999999999999999977788999999999999999
Q ss_pred ccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecc--cCCccccCCCCCcEEEcccccccc
Q 044860 111 NQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHG--GIPSTLSNCTYLQKLSLSLNDFWG 188 (279)
Q Consensus 111 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~~~ 188 (279)
|.++ .+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 9988 5565543 78888888888887 6666666788888888888887743 445566677777777777766632
Q ss_pred cCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhc
Q 044860 189 AIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFK 268 (279)
Q Consensus 189 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
.|..+. ++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 333221 45666666666665555555556666666666666665544445555666666666666655 34445555
Q ss_pred ccccceeee
Q 044860 269 LLLSIEFEI 277 (279)
Q Consensus 269 l~~L~~l~l 277 (279)
+++|++|++
T Consensus 262 l~~L~~L~l 270 (330)
T 1xku_A 262 HKYIQVVYL 270 (330)
T ss_dssp CSSCCEEEC
T ss_pred CCCcCEEEC
Confidence 666665554
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.5e-28 Score=207.92 Aligned_cols=223 Identities=21% Similarity=0.166 Sum_probs=146.1
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45666777766666443334566666777777776666555556666667777777766666555556666666777777
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccC----------------------
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAI---------------------- 190 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~---------------------- 190 (279)
++|.+. .+|..++.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 666666 566665566666666666666666555555666666666666666543221
Q ss_pred -------------------------------------chhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCc
Q 044860 191 -------------------------------------PKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANK 233 (279)
Q Consensus 191 -------------------------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 233 (279)
...+..+++|+.|++++|.+++..+..+..+++|++|++++|.
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp CSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred CCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence 1234455677777777777776667777777888888888887
Q ss_pred ccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 234 LQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 234 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+++ ++..+..+++|+.|++++|++++ +|..+..+++|++|+++
T Consensus 284 l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~ 326 (390)
T 3o6n_A 284 LVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLD 326 (390)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECC
T ss_pred Ccc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECC
Confidence 763 45455677788888888887774 45557777778777764
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.9e-28 Score=197.06 Aligned_cols=219 Identities=20% Similarity=0.193 Sum_probs=195.2
Q ss_pred EEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCC
Q 044860 56 AVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFN 135 (279)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (279)
+.++.+++.+. .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56788888887 455544 478999999999999777778999999999999999999877889999999999999999
Q ss_pred c-cccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccC
Q 044860 136 T-LSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEI 214 (279)
Q Consensus 136 ~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 214 (279)
. +. .+++..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 7 66 665555689999999999999999777888999999999999999997777777889999999999999998776
Q ss_pred chhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 215 PREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 215 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 6779999999999999999998889999999999999999999998888889999999999874
No 20
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9e-28 Score=200.15 Aligned_cols=221 Identities=22% Similarity=0.270 Sum_probs=153.3
Q ss_pred CcccceeeeCC---------CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeec
Q 044860 40 VCNWTGVTCDV---------HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCR 110 (279)
Q Consensus 40 ~~~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 110 (279)
.|.|..+.|.. -.++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 36677777752 235899999999999987788899999999999999999977788999999999999999
Q ss_pred ccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecc--cCCccccCCCCCcEEEcccccc--
Q 044860 111 NQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHG--GIPSTLSNCTYLQKLSLSLNDF-- 186 (279)
Q Consensus 111 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~~-- 186 (279)
|.++ .+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.+.. ..+..+..+ +|++|++++|.+
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9988 5666554 89999999999998 7777766899999999999998853 445555554 555555555544
Q ss_pred -------------------cccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCC
Q 044860 187 -------------------WGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSR 247 (279)
Q Consensus 187 -------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 247 (279)
.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 265 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKL 265 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCcc
Confidence 3333344444555555555555555444444555555555555555554 44444555555
Q ss_pred CCEEEccCcccccccchhh
Q 044860 248 LEILQLSDNFLTGIISSSI 266 (279)
Q Consensus 248 L~~L~l~~n~l~~~~~~~~ 266 (279)
|+.|++++|++++..+..+
T Consensus 266 L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp CCEEECCSSCCCBCCTTSS
T ss_pred CCEEECCCCCCCccChhHc
Confidence 5555555555554443333
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1e-27 Score=209.30 Aligned_cols=226 Identities=19% Similarity=0.131 Sum_probs=131.0
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCc------------
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPS------------ 119 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------ 119 (279)
.+++++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+.
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 34566666666655555555555555555555555555533333344555555555555554444444
Q ss_pred ------------cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccc----
Q 044860 120 ------------FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSL---- 183 (279)
Q Consensus 120 ------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~---- 183 (279)
.+..+++|++|++++|.++ .++...+.++++|+.|++.+|.+.+..+..+..+++|+.|++++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 4444455555555555554 34444445555555555555555544444455555444444444
Q ss_pred --------------------ccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCcccc
Q 044860 184 --------------------NDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELG 243 (279)
Q Consensus 184 --------------------n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~ 243 (279)
|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+.
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc
Confidence 333333234455666677777777776655555666677777777777777666666777
Q ss_pred CCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 244 NLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 244 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
.+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred CcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 77777777777777776666666777777777653
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.3e-27 Score=208.72 Aligned_cols=226 Identities=19% Similarity=0.194 Sum_probs=183.8
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45899999999999988888999999999999999999988889999999999999999999966666788999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|.+. .+++..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999998 555555589999999999999998777888999999999999999997777777888888999999888887
Q ss_pred ccCchhccCCCCCCEEeccCC------------------------cccccCCccccCCCCCCEEEccCcccccccchhhh
Q 044860 212 GEIPREFGNLAELELMSLPAN------------------------KLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIF 267 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n------------------------~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 267 (279)
+..+..+..+++|++|++++| .++...+..+..+++|+.|++++|.+++..+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 666656666666666555554 44422223456667777777777777766666667
Q ss_pred cccccceeeec
Q 044860 268 KLLLSIEFEIF 278 (279)
Q Consensus 268 ~l~~L~~l~l~ 278 (279)
.+++|++|+++
T Consensus 270 ~l~~L~~L~L~ 280 (477)
T 2id5_A 270 ELLRLQEIQLV 280 (477)
T ss_dssp TCTTCCEEECC
T ss_pred ccccCCEEECC
Confidence 77777777653
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.1e-27 Score=197.46 Aligned_cols=204 Identities=19% Similarity=0.294 Sum_probs=189.2
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccC--------
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFN-------- 123 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-------- 123 (279)
.+++++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 458999999999999 78889999999999999999998 88999999999999999999888888887754
Q ss_pred -CCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcE
Q 044860 124 -KSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKE 202 (279)
Q Consensus 124 -l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 202 (279)
+++|++|++++|.++ .+|..+ .++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASI-ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGG-GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred cCCCCCEEECcCCCcC-cchHhh-cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 999999999999998 888876 88999999999999998 56777999999999999999998999999999999999
Q ss_pred EEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 203 LYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 203 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9999999998999999999999999999999999999999999999999999876654
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.8e-27 Score=211.51 Aligned_cols=225 Identities=20% Similarity=0.201 Sum_probs=122.4
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCc-cccCCCCCcEEEeecccCCCCC--CccccCCCCCc
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPS-AIFTTYTLKYVSFCRNQLSGAF--PSFIFNKSSLQ 128 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~ 128 (279)
.+++++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 300 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 379 (606)
T 3t6q_A 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379 (606)
T ss_dssp CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCC
T ss_pred cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCC
Confidence 35777777777777765565666666666666666665544333 3555566666666655555332 44455555555
Q ss_pred EEEccCCccc------------------------cccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccc
Q 044860 129 HLDFSFNTLS------------------------GEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLN 184 (279)
Q Consensus 129 ~L~l~~~~~~------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 184 (279)
+|++++|.+. +..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 5555555554 2223332344444444444444444444444444555555555555
Q ss_pred ccccc---CchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccc
Q 044860 185 DFWGA---IPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 185 ~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 261 (279)
.+.+. .+..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..++.| .|++++|.+++.
T Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 44331 11334445555555555555555555555555556666666665555555555555555 566666666655
Q ss_pred cchhhhcccccceeee
Q 044860 262 ISSSIFKLLLSIEFEI 277 (279)
Q Consensus 262 ~~~~~~~l~~L~~l~l 277 (279)
+|..+..+++|+++++
T Consensus 539 ~~~~~~~l~~L~~L~l 554 (606)
T 3t6q_A 539 LPSLLPILSQQRTINL 554 (606)
T ss_dssp CGGGHHHHHTSSEEEC
T ss_pred CHhhcccCCCCCEEeC
Confidence 5555556666666554
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.5e-26 Score=207.68 Aligned_cols=224 Identities=26% Similarity=0.252 Sum_probs=128.8
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
+++.++++++.+.+..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 4555555555555444444555555555555555544 444444555555555555555444334444444444444444
Q ss_pred CCccccccChhhh--------------------------cCCCCCcEEecccceecccCCccccCCCCCcEEEccccccc
Q 044860 134 FNTLSGEIPANIC--------------------------SNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW 187 (279)
Q Consensus 134 ~~~~~~~~~~~~~--------------------------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (279)
+|.+.+.++...+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 4444333333322 45555555555555555455555566666666666666654
Q ss_pred ccCch-hhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccccc---CCccccCCCCCCEEEccCcccccccc
Q 044860 188 GAIPK-EIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGE---IPQELGNLSRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 188 ~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 44332 355666677777777776666666666777777777777776542 22456677777777777777777777
Q ss_pred hhhhcccccceeeec
Q 044860 264 SSIFKLLLSIEFEIF 278 (279)
Q Consensus 264 ~~~~~l~~L~~l~l~ 278 (279)
..+..+++|++|+++
T Consensus 494 ~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLS 508 (606)
T ss_dssp TTTTTCTTCCEEECC
T ss_pred hhhccccCCCEEECC
Confidence 777777777777764
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.6e-27 Score=214.78 Aligned_cols=223 Identities=15% Similarity=0.224 Sum_probs=186.3
Q ss_pred CCCceEEEEecCCCcccc-----------------cCCccC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEeecc
Q 044860 51 HSHKVAVLNVSGLNLTGT-----------------IPSQLG--NLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRN 111 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 111 (279)
..+++++|++++|.+.+. +|..+. ++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 456899999999999975 888888 9999999999999999899999999999999999999
Q ss_pred c-CCC-CCCccccCC------CCCcEEEccCCccccccCh--hhhcCCCCCcEEecccceecccCCccccCCCCCcEEEc
Q 044860 112 Q-LSG-AFPSFIFNK------SSLQHLDFSFNTLSGEIPA--NICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSL 181 (279)
Q Consensus 112 ~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 181 (279)
. +++ .+|..+..+ ++|++|++++|.++ .+|. .+ .++++|++|++++|.+.+.+| .+..+++|++|++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL-QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH-TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh-ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 8 887 788887776 89999999999998 8887 55 889999999999999887777 7888889999999
Q ss_pred ccccccccCchhhcCCCC-CcEEEccCccccccCchhccCCC--CCCEEeccCCcccccCCcccc-------CCCCCCEE
Q 044860 182 SLNDFWGAIPKEIGNLTK-LKELYLGRNGLLGEIPREFGNLA--ELELMSLPANKLQGEIPQELG-------NLSRLEIL 251 (279)
Q Consensus 182 ~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~l~-------~~~~L~~L 251 (279)
++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+ +|++|++++|.+.+..|..+. .+++|+.|
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 999885 77777888888 999999988887 6676666544 788888888888877777776 67788888
Q ss_pred EccCcccccccchhhhcccccceeeec
Q 044860 252 QLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 252 ~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
++++|.+++..+..+..+++|++|+++
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECC
Confidence 888888885444445567888887764
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=5.1e-26 Score=189.41 Aligned_cols=204 Identities=22% Similarity=0.284 Sum_probs=119.7
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
..+++++|++++|.+.+..|..|..+++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 4568999999999999888889999999999999999887 5555443 577777777777765555556666777777
Q ss_pred EccCCcccc-ccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcc
Q 044860 131 DFSFNTLSG-EIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNG 209 (279)
Q Consensus 131 ~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 209 (279)
++++|.+.. .+....+.++++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 777766642 122233355666666666555554 2222221 444455555444444444444444444444444444
Q ss_pred ccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccc
Q 044860 210 LLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 210 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 261 (279)
+++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++.
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence 44433334444444444444444444 3344444444444444444444433
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.3e-26 Score=189.47 Aligned_cols=218 Identities=22% Similarity=0.240 Sum_probs=190.3
Q ss_pred EEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCC--CCccccCCCCCcEEEcc
Q 044860 56 AVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGA--FPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~ 133 (279)
+.++.+++.+. .+|..+. +++++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46888888887 5565443 6899999999999844444578999999999999998732 35667789999999999
Q ss_pred CCccccccChhhhcCCCCCcEEecccceecccCC-ccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFHGGIP-STLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
+|.+. .++..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 99998 677765 789999999999999985544 578899999999999999988888889999999999999999986
Q ss_pred -cCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 213 -EIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 213 -~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 578889999999999999999998888899999999999999999998888789999999999875
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3.5e-26 Score=194.66 Aligned_cols=220 Identities=21% Similarity=0.247 Sum_probs=163.3
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
+++++|+++++.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 46777777777777666666777777777777777776555666677777777777777776333333466777777777
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccC----------------------------------------------
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGI---------------------------------------------- 166 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------------------------------------------- 166 (279)
++|.+. .+++..+.++++|++|++++|.+....
T Consensus 149 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 227 (390)
T 3o6n_A 149 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 227 (390)
T ss_dssp CSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSS
T ss_pred CCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeecccccccc
Confidence 777766 444443466666666666666554211
Q ss_pred -------------CccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCc
Q 044860 167 -------------PSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANK 233 (279)
Q Consensus 167 -------------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 233 (279)
...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ ++..+..+++|++|++++|.
T Consensus 228 L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCc
Confidence 1234566889999999999988888899999999999999999984 45666788999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 234 LQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 234 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
++ .+|..+..+++|+.|++++|++++.. +..+++|++|+++
T Consensus 307 l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 307 LL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 347 (390)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred ce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcC
Confidence 98 56767888999999999999998653 5678889988874
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.7e-26 Score=196.85 Aligned_cols=207 Identities=22% Similarity=0.223 Sum_probs=188.1
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
..++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 44689999999999998888899999999999999999996666679999999999999999997777789999999999
Q ss_pred EccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 131 DFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
++++|...+.++...|.++++|++|++++|.+. .+| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 999965555888877799999999999999997 445 488899999999999999888899999999999999999999
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccc
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
++..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++.
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred eEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 9888889999999999999999999777788899999999999999986
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.2e-26 Score=207.34 Aligned_cols=224 Identities=24% Similarity=0.221 Sum_probs=164.7
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57888888888888766667888888888888888888777777888888888888888887554556788888888888
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhc--CCCCCcEEEccCccc
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIG--NLTKLKELYLGRNGL 210 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l 210 (279)
++|.+. .+++..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 888887 56555557888888888888888766677777788888888888777555554432 335566666666655
Q ss_pred cccC---------------------------------------------------chhccCCC--CCCEEeccCCccccc
Q 044860 211 LGEI---------------------------------------------------PREFGNLA--ELELMSLPANKLQGE 237 (279)
Q Consensus 211 ~~~~---------------------------------------------------~~~l~~~~--~L~~L~l~~n~l~~~ 237 (279)
++.. +..+..++ +|++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 4433 33333333 377788888877766
Q ss_pred CCccccCCCCCCEEEccCcccccccchhhhcccccceeee
Q 044860 238 IPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
.+..+..+++|+.|++++|.+++..|..+..+++|++|++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 6777778888888888888888777777777777777765
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.1e-26 Score=195.99 Aligned_cols=208 Identities=23% Similarity=0.193 Sum_probs=188.3
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
..++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 45689999999999998888999999999999999999996666678899999999999999997667788999999999
Q ss_pred EccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 131 DFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
++++|...+.++...+.++++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 9999655558888877999999999999999984 44 588899999999999999888899999999999999999999
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.-
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 98888899999999999999999997777888999999999999998763
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=3.7e-26 Score=185.54 Aligned_cols=210 Identities=21% Similarity=0.154 Sum_probs=181.3
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.+++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35799999999999977777899999999999999999876777899999999999999999977778899999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceeccc-CCccccCCCCCcEEEcccccccccCchhhcCCCCCc----EEEcc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGG-IPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLK----ELYLG 206 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~ 206 (279)
+++|.+. .++...+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+.+|+ .|+++
T Consensus 107 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 9999998 55554458899999999999999753 588899999999999999999877777776666666 89999
Q ss_pred CccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccc
Q 044860 207 RNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 207 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+|.+.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++....+
T Consensus 186 ~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 186 LNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999866555444 4589999999999987666778999999999999999986654
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=212.65 Aligned_cols=94 Identities=24% Similarity=0.196 Sum_probs=45.4
Q ss_pred CCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCcc--ccCCCCCcEEEccCCccccccChhhhc
Q 044860 70 PSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSF--IFNKSSLQHLDFSFNTLSGEIPANICS 147 (279)
Q Consensus 70 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (279)
|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+...+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 344444455555555555444444444555555555555555544433332 445555555555555554322322335
Q ss_pred CCCCCcEEecccceec
Q 044860 148 NLPFLEYISLSQNMFH 163 (279)
Q Consensus 148 ~l~~L~~L~l~~~~~~ 163 (279)
++++|++|++++|.+.
T Consensus 146 ~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCSSCCEEEEESSCCC
T ss_pred hCCCCCEEECCCCcCC
Confidence 5555555555555443
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=8.5e-26 Score=203.40 Aligned_cols=107 Identities=20% Similarity=0.090 Sum_probs=66.5
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
+.+++|+|++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46777888888777666667777777777777777776555556677777777777777666444445555666666666
Q ss_pred cCCccccccChhhhcCCCCCcEEecccc
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQN 160 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 160 (279)
++|.++ .++...|.++++|++|++++|
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSS
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccC
Confidence 665554 333333344444444444333
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=1.5e-25 Score=186.67 Aligned_cols=225 Identities=16% Similarity=0.161 Sum_probs=183.3
Q ss_pred CCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcE
Q 044860 50 VHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQH 129 (279)
Q Consensus 50 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (279)
...+++++|++++|.+.+..|..|.++++|++|++++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 34568999999999999888889999999999999999987 5665544 78888888888888666666788888888
Q ss_pred EEccCCcccc-ccChhhhcCC--------------------CCCcEEecccceecccCCccccCCCCCcEEEcccccccc
Q 044860 130 LDFSFNTLSG-EIPANICSNL--------------------PFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWG 188 (279)
Q Consensus 130 L~l~~~~~~~-~~~~~~~~~l--------------------~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 188 (279)
|++++|.+.. .+....+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 8888887752 1222222222 467777788888776666788999999999999999988
Q ss_pred cCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccC------CCCCCEEEccCcccc--c
Q 044860 189 AIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGN------LSRLEILQLSDNFLT--G 260 (279)
Q Consensus 189 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~L~l~~n~l~--~ 260 (279)
..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. .+.|+.+++++|++. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 87778999999999999999998 77888999999999999999998766666654 467999999999987 6
Q ss_pred ccchhhhcccccceeeec
Q 044860 261 IISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 261 ~~~~~~~~l~~L~~l~l~ 278 (279)
..|..+..+++|+.++++
T Consensus 311 ~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SCGGGGTTBCCSTTEEC-
T ss_pred cCcccccccchhhhhhcc
Confidence 677889999999998874
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=3e-25 Score=179.57 Aligned_cols=197 Identities=25% Similarity=0.267 Sum_probs=177.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEec
Q 044860 78 SLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISL 157 (279)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 157 (279)
..+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.++ .++..+|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 5789999999988 5676543 68999999999999777778999999999999999998 888888899999999999
Q ss_pred ccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccccc
Q 044860 158 SQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGE 237 (279)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 237 (279)
++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99999877777789999999999999999888888889999999999999999977667789999999999999999877
Q ss_pred CCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 238 IPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
.+..+..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 77778999999999999999998777778999999999874
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.8e-25 Score=203.22 Aligned_cols=225 Identities=20% Similarity=0.182 Sum_probs=186.7
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCC-ccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP-SAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
+.++.+++++|.+.+..|..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 367778888888887778888889999999999998876555 5778889999999999988877778888889999999
Q ss_pred ccCCccc--cccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCc--------hhhcCCCCCc
Q 044860 132 FSFNTLS--GEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIP--------KEIGNLTKLK 201 (279)
Q Consensus 132 l~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~--------~~~~~~~~L~ 201 (279)
+++|.+. +.+|..+ .++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+.++++|+
T Consensus 461 l~~n~l~~~~~~p~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPF-QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp CTTSCCBCTTCSSCTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hccccccccccCCccc-ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 9988875 3455555 789999999999999987777778899999999999998865322 2367888999
Q ss_pred EEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhh-cccccceeeec
Q 044860 202 ELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIF-KLLLSIEFEIF 278 (279)
Q Consensus 202 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~l~ 278 (279)
.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.++++
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence 999999999855556788999999999999999866667788999999999999999988887777 78899988864
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9e-26 Score=202.12 Aligned_cols=220 Identities=21% Similarity=0.247 Sum_probs=182.8
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 58899999999998877778999999999999999988777777888999999999999888555555688899999999
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccC----------------------------------------------
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGI---------------------------------------------- 166 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------------------------------------------- 166 (279)
++|.+. .+++..+.++++|++|++++|.+.+..
T Consensus 155 s~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 155 SNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 999888 455544478888888888887765321
Q ss_pred -------------CccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCc
Q 044860 167 -------------PSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANK 233 (279)
Q Consensus 167 -------------~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 233 (279)
+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.
T Consensus 234 L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC
T ss_pred CCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC
Confidence 1235567889999999999988889999999999999999999985 56667788999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 234 LQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 234 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+. .+|..+..+++|+.|++++|.+++.. +..+++|++|+++
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~ 353 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLS 353 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECC
T ss_pred CC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEee
Confidence 98 67777888999999999999998763 5678889988874
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=8e-26 Score=209.85 Aligned_cols=224 Identities=20% Similarity=0.224 Sum_probs=118.9
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCcc--ccCCCCCcEEEeecccCCCCCC-ccccCCCCCcE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSA--IFTTYTLKYVSFCRNQLSGAFP-SFIFNKSSLQH 129 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~ 129 (279)
+++++|++++|.+.+..|..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 45666666666665555566666666666666666655444333 5556666666666666554332 34556666666
Q ss_pred EEccCCccccccChhhhcCC--CC------------------------------CcEEecccceecccCCcccc------
Q 044860 130 LDFSFNTLSGEIPANICSNL--PF------------------------------LEYISLSQNMFHGGIPSTLS------ 171 (279)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~l--~~------------------------------L~~L~l~~~~~~~~~~~~l~------ 171 (279)
|++++|.+.+..+..+ ..+ ++ |++|++++|.+.+..+..+.
T Consensus 153 L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 6666665543322222 111 22 33333333322211111000
Q ss_pred ------------------------------C--CCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhcc
Q 044860 172 ------------------------------N--CTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFG 219 (279)
Q Consensus 172 ------------------------------~--~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 219 (279)
+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence 0 12344444444444444444455555566666666666555555566
Q ss_pred CCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeee
Q 044860 220 NLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 220 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 312 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 6666666666666665555556666666666666666666555555666666666665
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=7.7e-26 Score=202.99 Aligned_cols=201 Identities=24% Similarity=0.199 Sum_probs=102.0
Q ss_pred CCCCCCEEEccCCccccc--CCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCC
Q 044860 75 NLSSLQSLDLSFNQLSGS--IPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 75 ~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (279)
.+++|++|++++|.+.+. .+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+...+.++++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 334444444444443322 1334444444555555444444 2334444555555555555555433332333455555
Q ss_pred cEEecccceecccCCccccCCCCCcEEEcccccccc-cCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccC
Q 044860 153 EYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWG-AIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPA 231 (279)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 231 (279)
++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.+++..|..+..+++|++|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 555555555554455555555555555555555544 2444555555555555555555555555555555555555555
Q ss_pred CcccccCCccccCCCCCCEEEccCcccccccchhhhccc-ccceeee
Q 044860 232 NKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLL-LSIEFEI 277 (279)
Q Consensus 232 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l 277 (279)
|++++..|..+..+++|+.|++++|++++ +|..+..++ +|++|++
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNL 552 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEEC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEc
Confidence 55555445555555555555555555553 333355554 3555554
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=1.7e-25 Score=181.67 Aligned_cols=216 Identities=21% Similarity=0.207 Sum_probs=181.4
Q ss_pred EEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCcc
Q 044860 58 LNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTL 137 (279)
Q Consensus 58 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 137 (279)
++-.+.++. .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 333444444 4565554 5799999999999977777899999999999999999977777899999999999999999
Q ss_pred ccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccccccccc-CchhhcCCCCCcEEEccCccccccCch
Q 044860 138 SGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGA-IPKEIGNLTKLKELYLGRNGLLGEIPR 216 (279)
Q Consensus 138 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~ 216 (279)
. .++...+.++++|++|++.+|.+.+..+..+..+++|++|++++|.+.+. .|..+..+++|+.|++++|.+++..+.
T Consensus 89 ~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp C-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred C-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8 56655558999999999999999876666799999999999999999664 588899999999999999999877766
Q ss_pred hccCCCCCC----EEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 217 EFGNLAELE----LMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 217 ~l~~~~~L~----~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
.+..+++|+ +|++++|.+++..+..+ ...+|+.|++++|.+++..+..+..+++|++|+++
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred HhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 776666666 89999999986555544 44589999999999998877778999999999875
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=7.3e-26 Score=203.15 Aligned_cols=221 Identities=25% Similarity=0.255 Sum_probs=185.0
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCC--CCccccCCCCCc
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGA--FPSFIFNKSSLQ 128 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~ 128 (279)
..++++.|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|+
T Consensus 305 ~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 345888999999988 4677 45 8899999999998655333 567888999999999988754 377788889999
Q ss_pred EEEccCCccccccChhhhcCCCCCcEEecccceecccCC-ccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccC
Q 044860 129 HLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIP-STLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGR 207 (279)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 207 (279)
+|++++|.+. .++..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 380 ~L~L~~n~l~-~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 380 HLDLSFNGAI-IMSANF-MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp EEECCSCSEE-EECCCC-TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred EeECCCCccc-cchhhc-cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 9999999887 566444 788999999999999886666 5788889999999999998888888888889999999999
Q ss_pred ccccc-cCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 208 NGLLG-EIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 208 n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence 99886 367788888999999999999988788888899999999999999998888888999999998874
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=1.2e-25 Score=182.12 Aligned_cols=209 Identities=22% Similarity=0.253 Sum_probs=182.4
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.+++.++.+.. + ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3488999999998873 3 348889999999999999884 3 4788999999999999999977777789999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999998 677776689999999999999998777777889999999999999998777777889999999999999999
Q ss_pred ccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhccccc
Q 044860 212 GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLS 272 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 272 (279)
+..+..+..+++|++|++++|.+. ..++.|+.++++.|.+++.+|..++.++..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 887778899999999999999876 346678999999999999999888776654
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3e-26 Score=200.16 Aligned_cols=212 Identities=21% Similarity=0.168 Sum_probs=149.5
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.|++++|.+.+..|..|..+++|++|++++|.+.+..| +..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 4489999999999988777889999999999999999886554 888899999999998877322 226777777
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhc-CCCCCcEEEccCccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIG-NLTKLKELYLGRNGL 210 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l 210 (279)
+++|.+. .++. ..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus 106 L~~N~l~-~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNIS-RVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCC-CEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCC-CCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 7777776 3333 2356777777777777766666667777777777777777665565554 567777777777777
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
++. + ....+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|+++
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 182 YDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLR 245 (487)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECT
T ss_pred ccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcC
Confidence 644 2 223466777777777777643 3346666777777777777765 45556666777766653
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.3e-25 Score=198.00 Aligned_cols=104 Identities=27% Similarity=0.372 Sum_probs=46.4
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
++++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|.. .+++|++|+++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence 4444555554444433344444444555555544444333444444444444444444444 23322 34444444444
Q ss_pred CCcccc-ccChhhhcCCCCCcEEecccce
Q 044860 134 FNTLSG-EIPANICSNLPFLEYISLSQNM 161 (279)
Q Consensus 134 ~~~~~~-~~~~~~~~~l~~L~~L~l~~~~ 161 (279)
+|.+.+ .+|..+ .++++|++|++++|.
T Consensus 99 ~N~l~~~~~p~~~-~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 99 FNAFDALPICKEF-GNMSQLKFLGLSTTH 126 (520)
T ss_dssp SSCCSSCCCCGGG-GGCTTCCEEEEEESS
T ss_pred CCccccccchhhh-ccCCcceEEEecCcc
Confidence 444442 122222 444444444444443
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.3e-27 Score=193.83 Aligned_cols=217 Identities=21% Similarity=0.234 Sum_probs=168.5
Q ss_pred eEEEEecCCCcc-cccCCccC-------CCCCCCEEEccCCcccccCCccc--cCCCCCcEEEeecccCCCCCCccccCC
Q 044860 55 VAVLNVSGLNLT-GTIPSQLG-------NLSSLQSLDLSFNQLSGSIPSAI--FTTYTLKYVSFCRNQLSGAFPSFIFNK 124 (279)
Q Consensus 55 l~~l~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l 124 (279)
++.|+++++.+. ...|..+. ++++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 445566666653 33444343 68899999999999988888876 7899999999999999866 7767665
Q ss_pred -----CCCcEEEccCCccccccChhhhcCCCCCcEEecccceeccc--CCccc--cCCCCCcEEEcccccccc---cCch
Q 044860 125 -----SSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGG--IPSTL--SNCTYLQKLSLSLNDFWG---AIPK 192 (279)
Q Consensus 125 -----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~n~~~~---~~~~ 192 (279)
++|++|++++|.+. .++...+.++++|++|++++|.+.+. .+..+ ..+++|++|++++|.+.+ ....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 89999999999998 55544458899999999999986543 22333 778999999999998852 2223
Q ss_pred hhcCCCCCcEEEccCccccccCc-hhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccc
Q 044860 193 EIGNLTKLKELYLGRNGLLGEIP-REFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLL 271 (279)
Q Consensus 193 ~~~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 271 (279)
.+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 44677899999999999987664 45666789999999999998 6776665 8899999999999877 55 889999
Q ss_pred cceeeec
Q 044860 272 SIEFEIF 278 (279)
Q Consensus 272 L~~l~l~ 278 (279)
|++|+++
T Consensus 298 L~~L~L~ 304 (312)
T 1wwl_A 298 VGNLSLK 304 (312)
T ss_dssp EEEEECT
T ss_pred CCEEecc
Confidence 9998874
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=8.6e-26 Score=189.73 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=179.1
Q ss_pred CCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCC-ccccCCCCCc
Q 044860 50 VHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFP-SFIFNKSSLQ 128 (279)
Q Consensus 50 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~ 128 (279)
...++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 345799999999999998888889999999999999999985444458899999999999999984433 4788999999
Q ss_pred EEEccCCc-cccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccC
Q 044860 129 HLDFSFNT-LSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGR 207 (279)
Q Consensus 129 ~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 207 (279)
+|++++|. +. .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++
T Consensus 153 ~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 153 ILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp EEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred EEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 99999995 55 66666668999999999999999888889999999999999999998544444455688999999999
Q ss_pred cccccc-------------------------------CchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCc
Q 044860 208 NGLLGE-------------------------------IPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDN 256 (279)
Q Consensus 208 n~l~~~-------------------------------~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 256 (279)
|.+++. +|..+..+++|++|++++|+++...+..+..+++|+.|++++|
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 988753 2445678899999999999998443444689999999999999
Q ss_pred ccccccc
Q 044860 257 FLTGIIS 263 (279)
Q Consensus 257 ~l~~~~~ 263 (279)
++.+..|
T Consensus 312 ~~~~~~~ 318 (353)
T 2z80_A 312 PWDCSCP 318 (353)
T ss_dssp CBCCCHH
T ss_pred CccCcCC
Confidence 9997765
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.6e-26 Score=188.11 Aligned_cols=217 Identities=22% Similarity=0.187 Sum_probs=113.9
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCc-------------
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPS------------- 119 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~------------- 119 (279)
++++.|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence 356666666666665555556666666666666666653332 55666666666666655421100
Q ss_pred ---cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccc-cCCCCCcEEEcccccccccCchhhc
Q 044860 120 ---FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTL-SNCTYLQKLSLSLNDFWGAIPKEIG 195 (279)
Q Consensus 120 ---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~ 195 (279)
....+++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. +. ..
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~ 188 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV 188 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred CCcCccccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-cc
Confidence 0112344555555555554 3333233445555555555555554333333 2445555555555555333 21 12
Q ss_pred CCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccc-cccchhhhcccccce
Q 044860 196 NLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT-GIISSSIFKLLLSIE 274 (279)
Q Consensus 196 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 274 (279)
.+++|+.|++++|.+++. +..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++. +.+|..+..+++|+.
T Consensus 189 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 345566666666655532 333555566666666666655 34445555566666666666665 445555555555554
Q ss_pred ee
Q 044860 275 FE 276 (279)
Q Consensus 275 l~ 276 (279)
++
T Consensus 267 l~ 268 (317)
T 3o53_A 267 VA 268 (317)
T ss_dssp HH
T ss_pred EE
Confidence 44
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=4.7e-25 Score=196.23 Aligned_cols=108 Identities=26% Similarity=0.383 Sum_probs=89.4
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
++++.|++++|.+.+..+..|.++++|++|++++|.+.+..|..|..+++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 58999999999998777788999999999999999998777888899999999999999888 56655 7889999999
Q ss_pred cCCccccccC-hhhhcCCCCCcEEecccceecc
Q 044860 133 SFNTLSGEIP-ANICSNLPFLEYISLSQNMFHG 164 (279)
Q Consensus 133 ~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~ 164 (279)
++|.+. .++ +..+.++++|++|++++|.+..
T Consensus 129 s~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCcc-ccCchHhhcccCcccEEecCCCcccc
Confidence 999887 443 2334788888888888887653
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=2.6e-25 Score=197.29 Aligned_cols=224 Identities=17% Similarity=0.099 Sum_probs=181.8
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
+++++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 58999999999999888889999999999999999999878888999999999999999999777777999999999999
Q ss_pred cCCcccc-ccChhhhcCCCCCcEEeccccee-cccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 133 SFNTLSG-EIPANICSNLPFLEYISLSQNMF-HGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 133 ~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
++|.+.+ ..+.. +.++++|++|++++|.. ....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 106 s~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 106 MGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 9999974 23343 48899999999999984 433346789999999999999999888899999999999999999988
Q ss_pred cccCchhccCCCCCCEEeccCCcccccC--C-ccccCCCCCCEEEccCcccccccchhh----hcccccceeee
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEI--P-QELGNLSRLEILQLSDNFLTGIISSSI----FKLLLSIEFEI 277 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~-~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~l~l 277 (279)
.......+..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..+..+ ..+++|+.+++
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 6332233456889999999999987532 2 233557788888888888776544333 34455555543
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.5e-25 Score=206.27 Aligned_cols=222 Identities=17% Similarity=0.188 Sum_probs=177.3
Q ss_pred CCCceEEEEecCCCccc-----------------ccCCccC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEeecc
Q 044860 51 HSHKVAVLNVSGLNLTG-----------------TIPSQLG--NLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRN 111 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~ 111 (279)
..++++.|++++|.+.+ .+|..++ ++++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 45689999999999997 3888887 9999999999999998899999999999999999999
Q ss_pred c-CCC-CCCccccCC-------CCCcEEEccCCccccccCh--hhhcCCCCCcEEecccceecccCCccccCCCCCcEEE
Q 044860 112 Q-LSG-AFPSFIFNK-------SSLQHLDFSFNTLSGEIPA--NICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLS 180 (279)
Q Consensus 112 ~-~~~-~~~~~l~~l-------~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 180 (279)
. +++ .+|..+..+ ++|++|++++|.+. .+|. .+ .++++|++|++++|.+. .+| .+..+++|+.|+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l-~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL-QKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH-TTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh-hcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 8 887 677765544 49999999999998 8888 55 88999999999999998 777 788999999999
Q ss_pred cccccccccCchhhcCCCC-CcEEEccCccccccCchhccCCCC--CCEEeccCCcccccCCccc---c--CCCCCCEEE
Q 044860 181 LSLNDFWGAIPKEIGNLTK-LKELYLGRNGLLGEIPREFGNLAE--LELMSLPANKLQGEIPQEL---G--NLSRLEILQ 252 (279)
Q Consensus 181 l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~l---~--~~~~L~~L~ 252 (279)
+++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+. |+.|++++|.+.+.+|... . .+++|+.|+
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 9999985 77777888888 999999999987 66766665543 8888888888776544322 1 234677777
Q ss_pred ccCcccccccchhhhcccccceeeec
Q 044860 253 LSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 253 l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+++|.+++..+..+..+++|+.|+++
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls 705 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILS 705 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECC
T ss_pred ccCCcCCccCHHHHccCCCCCEEECC
Confidence 77777774333333466777776653
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2e-24 Score=176.36 Aligned_cols=201 Identities=24% Similarity=0.192 Sum_probs=173.2
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.++++++.+. .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+ . ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEE
Confidence 347889999999988 4565554 689999999999987777889999999999999999885333 2 6889999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|.+. .+|..+ ..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.++
T Consensus 84 Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9999998 788766 78999999999999998776788999999999999999997777777888999999999999998
Q ss_pred ccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 212 GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
+..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|++..
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 666667788999999999999998 677778888899999999998863
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1e-25 Score=186.05 Aligned_cols=204 Identities=23% Similarity=0.234 Sum_probs=172.7
Q ss_pred CCceEEEEecCCCcccccCCcc--CCCCCCCEEEccCCcccccCCccccCC-----CCCcEEEeecccCCCCCCccccCC
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQL--GNLSSLQSLDLSFNQLSGSIPSAIFTT-----YTLKYVSFCRNQLSGAFPSFIFNK 124 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l~~l 124 (279)
.+++++|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4589999999999998888876 8999999999999999866 7777776 999999999999998888999999
Q ss_pred CCCcEEEccCCccccc--cChh-hhcCCCCCcEEecccceecc---cCCccccCCCCCcEEEcccccccccCc-hhhcCC
Q 044860 125 SSLQHLDFSFNTLSGE--IPAN-ICSNLPFLEYISLSQNMFHG---GIPSTLSNCTYLQKLSLSLNDFWGAIP-KEIGNL 197 (279)
Q Consensus 125 ~~L~~L~l~~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~~~~ 197 (279)
++|++|++++|.+.+. ++.. .+..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999997644 2222 23789999999999999872 222344577999999999999977664 455668
Q ss_pred CCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccc
Q 044860 198 TKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 198 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 261 (279)
++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 89999999999998 6676665 8999999999999855 65 88999999999999999863
No 55
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.6e-24 Score=176.92 Aligned_cols=198 Identities=22% Similarity=0.257 Sum_probs=175.8
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCC
Q 044860 73 LGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (279)
+.+++++++++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.++ .++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 567889999999999998 6666554 68999999999999877888999999999999999998 55543 679999
Q ss_pred cEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCC
Q 044860 153 EYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPAN 232 (279)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 232 (279)
++|++++|.+. .+|..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 67888899999999999999998777788999999999999999999777778889999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 233 KLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 233 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+++...+..+..+++|+.|++++|.++ .+|..++.+++|+.++++
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeC
Confidence 999666677889999999999999999 567778888999998874
No 56
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=9.4e-25 Score=194.48 Aligned_cols=221 Identities=21% Similarity=0.263 Sum_probs=167.0
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCcc--------------------ccCCCCCcEEEeeccc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSA--------------------IFTTYTLKYVSFCRNQ 112 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--------------------~~~l~~L~~L~l~~~~ 112 (279)
++++.++++++.+. .+|..+..+ +|++|++++|.+. .+|.. ...+++|++|++++|.
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 46667777776665 355555555 5666666555554 22221 1456677777777777
Q ss_pred CCCCC--CccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCC-ccccCCCCCcEEEccccccccc
Q 044860 113 LSGAF--PSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIP-STLSNCTYLQKLSLSLNDFWGA 189 (279)
Q Consensus 113 ~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~ 189 (279)
+.+.. +..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 66432 556677788888888888777 45555 4778888888888888876544 4677888999999999988777
Q ss_pred CchhhcCCCCCcEEEccCcccc-ccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhc
Q 044860 190 IPKEIGNLTKLKELYLGRNGLL-GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFK 268 (279)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
.+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 8888888899999999999887 467788888899999999999998777888888999999999999998888878888
Q ss_pred ccccceeeec
Q 044860 269 LLLSIEFEIF 278 (279)
Q Consensus 269 l~~L~~l~l~ 278 (279)
+++|++|+++
T Consensus 517 l~~L~~L~l~ 526 (570)
T 2z63_A 517 LTSLQKIWLH 526 (570)
T ss_dssp CTTCCEEECC
T ss_pred ccCCcEEEec
Confidence 9999988864
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=2.9e-24 Score=170.75 Aligned_cols=193 Identities=20% Similarity=0.199 Sum_probs=135.3
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEeeccc-CCCCCCccccCCCCCcEEEccC-CccccccChhhhcCCCCCcEE
Q 044860 78 SLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQ-LSGAFPSFIFNKSSLQHLDFSF-NTLSGEIPANICSNLPFLEYI 155 (279)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L 155 (279)
++++|++++|.+.+..+..|..+++|++|++++|. ++...+..+..+++|++|++++ |.++ .++...|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 67777777777775555567777777777777775 6655555677777777777777 7776 6666555777778888
Q ss_pred ecccceecccCCccccCCCCCc---EEEcccc-cccccCchhhcCCCCCc-EEEccCccccccCchhccCCCCCCEEecc
Q 044860 156 SLSQNMFHGGIPSTLSNCTYLQ---KLSLSLN-DFWGAIPKEIGNLTKLK-ELYLGRNGLLGEIPREFGNLAELELMSLP 230 (279)
Q Consensus 156 ~l~~~~~~~~~~~~l~~~~~L~---~L~l~~n-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 230 (279)
++++|.+.+ +|. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|.++...+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 887777764 454 66666676 8888887 77666666677777888 8888888777333334444 678888888
Q ss_pred CCc-ccccCCccccCC-CCCCEEEccCcccccccchhhhcccccceeee
Q 044860 231 ANK-LQGEIPQELGNL-SRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 231 ~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
+|+ ++...+..+..+ ++|+.|++++|++++..+. .+++|+.|++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l 233 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIA 233 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEEC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeec
Confidence 884 775556667777 7888888888888754443 5556666654
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.5e-25 Score=192.82 Aligned_cols=85 Identities=26% Similarity=0.201 Sum_probs=70.3
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCC-CCCccccCCCCCcE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSG-AFPSFIFNKSSLQH 129 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 129 (279)
..+++++|++++|.+.+..|..|.++++|++|++++|.+. .+|.. .+++|++|++++|.+++ ..|..+..+++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4568999999999998877888999999999999999887 55655 78889999999988886 46788888888888
Q ss_pred EEccCCccc
Q 044860 130 LDFSFNTLS 138 (279)
Q Consensus 130 L~l~~~~~~ 138 (279)
|++++|.+.
T Consensus 120 L~L~~n~l~ 128 (520)
T 2z7x_B 120 LGLSTTHLE 128 (520)
T ss_dssp EEEEESSCC
T ss_pred EEecCcccc
Confidence 888887765
No 59
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=3.1e-24 Score=171.82 Aligned_cols=191 Identities=22% Similarity=0.288 Sum_probs=164.3
Q ss_pred CcccceeeeCCCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCc
Q 044860 40 VCNWTGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPS 119 (279)
Q Consensus 40 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 119 (279)
++.|.|+.|.. ..+.++++++.+. .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 4 Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 4 CETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 45788999953 5668999999888 5666554 6899999999999987788899999999999999999988888
Q ss_pred cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCC
Q 044860 120 FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTK 199 (279)
Q Consensus 120 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 199 (279)
.+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 78 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred HhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 8899999999999999998 777777789999999999999998666666788999999999999997776667888899
Q ss_pred CcEEEccCccccccCchhccCCCCCCEEeccCCccccc
Q 044860 200 LKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGE 237 (279)
Q Consensus 200 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 237 (279)
|+.|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999999877777888889999999999988754
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=7.1e-25 Score=194.48 Aligned_cols=135 Identities=22% Similarity=0.192 Sum_probs=112.3
Q ss_pred CCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCC-CCCccccCCCCCc
Q 044860 50 VHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSG-AFPSFIFNKSSLQ 128 (279)
Q Consensus 50 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~ 128 (279)
...+++++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 345699999999999998888899999999999999999997667779999999999999999986 3567889999999
Q ss_pred EEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccc
Q 044860 129 HLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLN 184 (279)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 184 (279)
+|++++|.+.+.++...+.++++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 99999998555777666689999999999999988777777665544444444333
No 61
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1.1e-23 Score=176.30 Aligned_cols=214 Identities=23% Similarity=0.262 Sum_probs=107.1
Q ss_pred CCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcE
Q 044860 50 VHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQH 129 (279)
Q Consensus 50 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (279)
...+++++|++++|.+.+ ++ .+..+++|++|++++|.+.+ .+. +..+++|++|++++|..... +..+..+++|++
T Consensus 85 ~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~ 159 (347)
T 4fmz_A 85 SNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNY 159 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCE
T ss_pred hcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccc-ccchhhCCCCcE
Confidence 345678888888887764 23 47777788888888777763 232 55666666666666543322 222444444444
Q ss_pred EEccCCccccccChhhhcCCCCCcEEecccceecccCC--------------------ccccCCCCCcEEEccccccccc
Q 044860 130 LDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIP--------------------STLSNCTYLQKLSLSLNDFWGA 189 (279)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~l~~~~~L~~L~l~~n~~~~~ 189 (279)
|++++|.+. .++. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 160 L~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~ 236 (347)
T 4fmz_A 160 LTVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL 236 (347)
T ss_dssp EECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred EEecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC
Confidence 444444433 1111 1333333333333333321100 0134445555555555555332
Q ss_pred CchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcc
Q 044860 190 IPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKL 269 (279)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 269 (279)
.+ +..+++|+.|++++|.+++. +.+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+
T Consensus 237 ~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred cc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 22 44555555555555555432 2344455555555555555422 234445555555555555555555555555
Q ss_pred cccceeee
Q 044860 270 LLSIEFEI 277 (279)
Q Consensus 270 ~~L~~l~l 277 (279)
++|++|++
T Consensus 311 ~~L~~L~L 318 (347)
T 4fmz_A 311 TNLTTLFL 318 (347)
T ss_dssp TTCSEEEC
T ss_pred ccCCEEEc
Confidence 55555544
No 62
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6.1e-24 Score=177.96 Aligned_cols=214 Identities=23% Similarity=0.301 Sum_probs=153.8
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCC------------
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFP------------ 118 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------ 118 (279)
..+++++|++++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+
T Consensus 108 ~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 184 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSL 184 (347)
T ss_dssp TCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred CCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEc
Confidence 445777777777776643 22 5566666666666664332222 24445555555555444432211
Q ss_pred --------ccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccC
Q 044860 119 --------SFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAI 190 (279)
Q Consensus 119 --------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 190 (279)
..+..+++|+++++++|.+. .++. +..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+.
T Consensus 185 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~- 258 (347)
T 4fmz_A 185 NYNQIEDISPLASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI- 258 (347)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC-
T ss_pred cCCcccccccccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC-
Confidence 01444555555555555554 2222 367889999999999887443 3 88999999999999998553
Q ss_pred chhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhccc
Q 044860 191 PKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLL 270 (279)
Q Consensus 191 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 270 (279)
..+..+++|+.|++++|.+++. +.+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..| +..++
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred -hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 4678899999999999999864 468889999999999999988888889999999999999999998776 88999
Q ss_pred ccceeeec
Q 044860 271 LSIEFEIF 278 (279)
Q Consensus 271 ~L~~l~l~ 278 (279)
+|++|+++
T Consensus 334 ~L~~L~l~ 341 (347)
T 4fmz_A 334 KMDSADFA 341 (347)
T ss_dssp TCSEESSS
T ss_pred ccceeehh
Confidence 99999874
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=2.2e-24 Score=191.93 Aligned_cols=86 Identities=19% Similarity=0.140 Sum_probs=74.2
Q ss_pred CCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCC-CCCccccCCCCCc
Q 044860 50 VHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSG-AFPSFIFNKSSLQ 128 (279)
Q Consensus 50 ~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~ 128 (279)
...+++++|++++|.+.+..|..|.++++|++|++++|.+. .+|.. .+++|++|++++|.+++ ..|..+..+++|+
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 34568999999999999888899999999999999999988 56665 78999999999999886 3467888999999
Q ss_pred EEEccCCccc
Q 044860 129 HLDFSFNTLS 138 (279)
Q Consensus 129 ~L~l~~~~~~ 138 (279)
+|++++|.+.
T Consensus 150 ~L~L~~n~l~ 159 (562)
T 3a79_B 150 FLGLSAAKFR 159 (562)
T ss_dssp EEEEECSBCC
T ss_pred EEecCCCccc
Confidence 9999988876
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=4e-24 Score=169.88 Aligned_cols=198 Identities=16% Similarity=0.204 Sum_probs=170.6
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCc-ccccCCccccCCCCCcEEEeec-ccCCCCCCccccCCCCCcE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQ-LSGSIPSAIFTTYTLKYVSFCR-NQLSGAFPSFIFNKSSLQH 129 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~ 129 (279)
.++++.|++++|++.+..+..|..+++|++|++++|. +.+..+..|..+++|++|++++ |.+++..+..+..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4589999999999997777789999999999999997 8756666889999999999998 9998666778899999999
Q ss_pred EEccCCccccccChhhhcCCCCCc---EEecccc-eecccCCccccCCCCCc-EEEcccccccccCchhhcCCCCCcEEE
Q 044860 130 LDFSFNTLSGEIPANICSNLPFLE---YISLSQN-MFHGGIPSTLSNCTYLQ-KLSLSLNDFWGAIPKEIGNLTKLKELY 204 (279)
Q Consensus 130 L~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~ 204 (279)
|++++|.+. .+|. +..+++|+ +|++++| .+....+..+..+++|+ +|++++|.+....+..+.. ++|+.|+
T Consensus 110 L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 999999998 5776 47888888 9999999 88866677799999999 9999999996554445554 7899999
Q ss_pred ccCcc-ccccCchhccCC-CCCCEEeccCCcccccCCccccCCCCCCEEEccCc
Q 044860 205 LGRNG-LLGEIPREFGNL-AELELMSLPANKLQGEIPQELGNLSRLEILQLSDN 256 (279)
Q Consensus 205 l~~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 256 (279)
+++|. +++..+..+..+ ++|++|++++|.++. +|.. .+++|+.|+++++
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 99995 887767788899 999999999999984 4543 6789999999876
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=192.79 Aligned_cols=220 Identities=20% Similarity=0.155 Sum_probs=164.6
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
+++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35788899999988877777888899999999999988866677788899999999999988877778888889999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecc-cCCccccCCCCCcEEEcccccccccCchhhcCCCCC----cEEEcc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHG-GIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKL----KELYLG 206 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~ 206 (279)
+++|.+. .++...+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+..+..+.+| +.++++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 9998887 5555445788899999999888875 357888888899999998888876666666655555 666666
Q ss_pred CccccccCc-----------------------------------------------------------------------
Q 044860 207 RNGLLGEIP----------------------------------------------------------------------- 215 (279)
Q Consensus 207 ~n~l~~~~~----------------------------------------------------------------------- 215 (279)
+|.+.+..+
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 665543333
Q ss_pred ----------hhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeee
Q 044860 216 ----------REFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 216 ----------~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l 332 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTF 332 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEE
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeC
Confidence 33344566777777777665 466666666 7777777777776 3333 46667777665
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=6.4e-25 Score=181.71 Aligned_cols=208 Identities=22% Similarity=0.177 Sum_probs=163.2
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCc----------------cccCCCCCcEEEeecccCC
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPS----------------AIFTTYTLKYVSFCRNQLS 114 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------~~~~l~~L~~L~l~~~~~~ 114 (279)
..++++.|++++|.+.+..+ +..+++|++|++++|.+.+..+. ....+++|++|++++|.++
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence 34577788888877765443 67777777777777766531100 0123567889999999988
Q ss_pred CCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhh
Q 044860 115 GAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI 194 (279)
Q Consensus 115 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 194 (279)
+..+..+..+++|++|++++|.+.+..+..++..+++|++|++++|.+.+. + ....+++|++|++++|.+.+. +..+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~ 210 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEF 210 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhh
Confidence 777778888999999999999998555565656789999999999999754 3 334589999999999999654 4458
Q ss_pred cCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccc-ccCCccccCCCCCCEEEccCc-ccccccch
Q 044860 195 GNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQ-GEIPQELGNLSRLEILQLSDN-FLTGIISS 264 (279)
Q Consensus 195 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~ 264 (279)
..+++|+.|++++|.++ .+|..+..+++|++|++++|.+. +..+.++..+++|+.++++++ .+++..|.
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 88999999999999998 56778889999999999999998 677888899999999999965 55555543
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.5e-23 Score=168.46 Aligned_cols=199 Identities=22% Similarity=0.234 Sum_probs=170.6
Q ss_pred EEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCcc
Q 044860 58 LNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTL 137 (279)
Q Consensus 58 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 137 (279)
+++..+.+.+. .....+++|+.|++++|.+. .+ ..+..+++|++|++++|.+.+ ...+..+++|++|++++|.+
T Consensus 24 l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 24 ANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCC
T ss_pred HHhcCcccccc--cccccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCcc
Confidence 34444444432 23556889999999999987 33 358889999999999999985 34788999999999999999
Q ss_pred ccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchh
Q 044860 138 SGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPRE 217 (279)
Q Consensus 138 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 217 (279)
+ .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..
T Consensus 98 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 98 Q-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp C-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred C-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 8 677776689999999999999999777777899999999999999998777777889999999999999999777777
Q ss_pred ccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccc
Q 044860 218 FGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 218 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 8899999999999999998777888999999999999999986654
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=177.55 Aligned_cols=218 Identities=18% Similarity=0.170 Sum_probs=134.6
Q ss_pred ceEEEEecCCCccccc-CC--ccCCCCCCCEEEccCCcccccCCccc--cCCCCCcEEEeecccCCCCCC----ccccCC
Q 044860 54 KVAVLNVSGLNLTGTI-PS--QLGNLSSLQSLDLSFNQLSGSIPSAI--FTTYTLKYVSFCRNQLSGAFP----SFIFNK 124 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~l 124 (279)
+++.+.+.++.+.... .. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 4566666666554210 00 11223557777777777776666666 667777777777777765433 233456
Q ss_pred CCCcEEEccCCccccccChhhhcCCCCCcEEecccceeccc----CCccccCCCCCcEEEcccccccccCch----hhcC
Q 044860 125 SSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGG----IPSTLSNCTYLQKLSLSLNDFWGAIPK----EIGN 196 (279)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~----~~~~ 196 (279)
++|++|++++|.+. .++...+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.. .+. .+..
T Consensus 145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 77777777777776 44444446777777777777765421 12233566777777777777632 222 2455
Q ss_pred CCCCcEEEccCccccccCchhccCC---CCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccc
Q 044860 197 LTKLKELYLGRNGLLGEIPREFGNL---AELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSI 273 (279)
Q Consensus 197 ~~~L~~L~l~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 273 (279)
+++|+.|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 6777777777777776656555544 57777777777776 4555443 6777777777777754 22 45667777
Q ss_pred eeeec
Q 044860 274 EFEIF 278 (279)
Q Consensus 274 ~l~l~ 278 (279)
.|+++
T Consensus 298 ~L~L~ 302 (310)
T 4glp_A 298 NLTLD 302 (310)
T ss_dssp CEECS
T ss_pred EEECc
Confidence 77653
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5e-23 Score=164.74 Aligned_cols=181 Identities=24% Similarity=0.271 Sum_probs=161.5
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEe
Q 044860 77 SSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYIS 156 (279)
Q Consensus 77 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 156 (279)
...++++++++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+. .++...+.++++|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 35678999999888 6676554 68999999999999888888999999999999999998 56666668999999999
Q ss_pred cccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccc
Q 044860 157 LSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQG 236 (279)
Q Consensus 157 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 236 (279)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999997777888999999999999999977777778899999999999999997777789999999999999999997
Q ss_pred cCCccccCCCCCCEEEccCcccccc
Q 044860 237 EIPQELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~n~l~~~ 261 (279)
..+..+..+++|+.|++++|++...
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777899999999999999999765
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=7.5e-23 Score=178.02 Aligned_cols=209 Identities=25% Similarity=0.301 Sum_probs=159.1
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
..++++.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 248 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL 248 (466)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEE
Confidence 345777888888777643 236777888888888887774433 66778888888888877642 356778888888
Q ss_pred EccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 131 DFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 249 ~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 249 DLANNQIS-NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp ECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred ECCCCccc-cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence 88888887 3333 3778888888888888874433 7788888888888888855433 67788899999999988
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|+++
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 86654 66788899999999988753 467888999999999999988776 7888888888764
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3e-24 Score=187.46 Aligned_cols=212 Identities=23% Similarity=0.183 Sum_probs=178.1
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
..++++.|++++|.+.+..| +..+++|++|++++|.+.+. + ..++|++|++++|.+.+..+. .+++|++|
T Consensus 56 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L 125 (487)
T 3oja_A 56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNI 125 (487)
T ss_dssp TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEE
T ss_pred CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEE
Confidence 45699999999999987655 89999999999999998743 2 348999999999999865543 46889999
Q ss_pred EccCCccccccChhhhcCCCCCcEEecccceecccCCcccc-CCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcc
Q 044860 131 DFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLS-NCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNG 209 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 209 (279)
++++|.+++..+..+ ..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. +. ...+++|+.|++++|.
T Consensus 126 ~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 126 YLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNK 202 (487)
T ss_dssp ECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSC
T ss_pred ECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCC
Confidence 999999985444444 7899999999999999887777775 789999999999999665 32 3458999999999999
Q ss_pred ccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccc-cccchhhhcccccceeee
Q 044860 210 LLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT-GIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 210 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~l 277 (279)
+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.+++
T Consensus 203 l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 203 LAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 9865 4458889999999999999984 6777899999999999999998 677788888888776654
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=5.4e-23 Score=169.40 Aligned_cols=192 Identities=24% Similarity=0.304 Sum_probs=163.6
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+. +.+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 3489999999999884 44 58889999999999999984 444 89999999999999998853 4688999999999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. . +..+++|+.|++++|.++
T Consensus 114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccC
Confidence 9999998 5554 4889999999999999975433 888999999999999985543 3 788999999999999998
Q ss_pred ccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 212 GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
+..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 5533 788999999999999998544 37899999999999999976
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.9e-22 Score=175.40 Aligned_cols=212 Identities=28% Similarity=0.368 Sum_probs=116.6
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.+++++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. . +..+++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-P-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh-H-HcCCCCCCEEE
Confidence 4577888888887775433 7777777777777777764333 677777777777777766432 2 66666777777
Q ss_pred ccCCccccccCh-------------------hhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCc-
Q 044860 132 FSFNTLSGEIPA-------------------NICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIP- 191 (279)
Q Consensus 132 l~~~~~~~~~~~-------------------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~- 191 (279)
+++|.+. .++. ..+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 141 l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~ 217 (466)
T 1o6v_A 141 LSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL 217 (466)
T ss_dssp EEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGG
T ss_pred CCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccc
Confidence 7666654 2221 0023445555555555554321 124444455555555544433222
Q ss_pred -------------------hhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEE
Q 044860 192 -------------------KEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQ 252 (279)
Q Consensus 192 -------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 252 (279)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 218 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred cccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 123344445555555554443222 4455555555555555543222 55566666666
Q ss_pred ccCcccccccchhhhcccccceeeec
Q 044860 253 LSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 253 l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+++|.+++..+ +..+++|++|+++
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLY 317 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECC
T ss_pred cCCCcccCchh--hcCCCCCCEEECc
Confidence 66666655433 5566666666653
No 74
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=4.1e-22 Score=172.63 Aligned_cols=196 Identities=21% Similarity=0.211 Sum_probs=117.2
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
+++++|++++|.+.+. | +..+++|++|++++|.+.+. + +..+++|++|++++|.+++ ++ +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 4555555555555542 2 55555566666666555532 2 5555566666666665553 22 555566666666
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
++|.+++ ++ + ..+++|++|++++|...+.+ .+..+++|++|++++|.+.+ .+ +..+++|+.|++++|.+++
T Consensus 135 ~~N~l~~-l~--l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 135 ARNTLTE-ID--V-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp TTSCCSC-CC--C-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCccce-ec--c-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 6665552 32 2 45566666666665333232 35566677777777776644 33 5566777777777777765
Q ss_pred cCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhccccccee
Q 044860 213 EIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEF 275 (279)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 275 (279)
. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++..+. .+++|+.|
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~---~l~~L~~L 259 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS---TLSKLTTL 259 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT---TCTTCCEE
T ss_pred e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH---HCCCCCEE
Confidence 4 36667778888888888775 44 67778888888888888775543 34444444
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1e-24 Score=185.42 Aligned_cols=227 Identities=19% Similarity=0.230 Sum_probs=166.3
Q ss_pred CCceEEEEecCCCcccc----cCCccCCCCCCCEEEccCCc---ccccCCccc-------cCCCCCcEEEeecccCCC--
Q 044860 52 SHKVAVLNVSGLNLTGT----IPSQLGNLSSLQSLDLSFNQ---LSGSIPSAI-------FTTYTLKYVSFCRNQLSG-- 115 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~---~~~~~~~~~-------~~l~~L~~L~l~~~~~~~-- 115 (279)
.++++.|++++|.+.+. ++..+..+++|++|++++|. +.+.+|..+ ..+++|++|++++|.+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 34788999999888754 33447788899999998863 344445444 578889999999988876
Q ss_pred --CCCccccCCCCCcEEEccCCccccccChhh---hcCC---------CCCcEEecccceecc-cCC---ccccCCCCCc
Q 044860 116 --AFPSFIFNKSSLQHLDFSFNTLSGEIPANI---CSNL---------PFLEYISLSQNMFHG-GIP---STLSNCTYLQ 177 (279)
Q Consensus 116 --~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~l---------~~L~~L~l~~~~~~~-~~~---~~l~~~~~L~ 177 (279)
.++..+..+++|++|++++|.+.+..+..+ +..+ ++|++|++++|.+.. ..+ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 366677788899999999988863322222 1233 888999998888862 333 3566778899
Q ss_pred EEEcccccccc-----cCchhhcCCCCCcEEEccCcccc----ccCchhccCCCCCCEEeccCCccccc----CCcccc-
Q 044860 178 KLSLSLNDFWG-----AIPKEIGNLTKLKELYLGRNGLL----GEIPREFGNLAELELMSLPANKLQGE----IPQELG- 243 (279)
Q Consensus 178 ~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~l~- 243 (279)
+|++++|.+.. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+++. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999888752 23336677888999999998885 45677778888899999999988754 445553
Q ss_pred -CCCCCCEEEccCccccc----ccchhh-hcccccceeeec
Q 044860 244 -NLSRLEILQLSDNFLTG----IISSSI-FKLLLSIEFEIF 278 (279)
Q Consensus 244 -~~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~l~l~ 278 (279)
.+++|+.|++++|.+++ .+|..+ .++++|++|+++
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 38889999999998887 477766 567888888864
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=3e-22 Score=164.96 Aligned_cols=189 Identities=21% Similarity=0.294 Sum_probs=161.4
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCC
Q 044860 73 LGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (279)
+.++++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++ . +..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~-~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-A-IAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-G-GTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-h-hcCCCCC
Confidence 446789999999999987 455 58899999999999999985443 889999999999999998 454 3 4789999
Q ss_pred cEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCC
Q 044860 153 EYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPAN 232 (279)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 232 (279)
++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 999999999975 33 38899999999999999955433 7889999999999999985433 889999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 233 KLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 233 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
.+++..+ +..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEcc
Confidence 9985433 7889999999999999997664 8899999999874
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.8e-24 Score=180.43 Aligned_cols=203 Identities=20% Similarity=0.171 Sum_probs=131.3
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCccccc-CCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGS-IPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
++++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4666777777766655444 44677777777777776644 556666777777777777776666666677777777777
Q ss_pred ccCC-ccccccChhhhcCCCCCcEEecccc-eeccc-CCccccCCC-CCcEEEcccc--ccc-ccCchhhcCCCCCcEEE
Q 044860 132 FSFN-TLSGEIPANICSNLPFLEYISLSQN-MFHGG-IPSTLSNCT-YLQKLSLSLN--DFW-GAIPKEIGNLTKLKELY 204 (279)
Q Consensus 132 l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~ 204 (279)
+++| .+++......+.++++|++|++++| .+.+. ++..+..++ +|++|++++| .+. +..+..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 7777 4553222233366777777777777 66532 345566667 7777777777 333 33455556677777777
Q ss_pred ccCcc-ccccCchhccCCCCCCEEeccCCc-ccccCCccccCCCCCCEEEccCc
Q 044860 205 LGRNG-LLGEIPREFGNLAELELMSLPANK-LQGEIPQELGNLSRLEILQLSDN 256 (279)
Q Consensus 205 l~~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~l~~n 256 (279)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77777 555556666777777777777774 32222224566777777777777
No 78
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.89 E-value=1.2e-22 Score=179.30 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=172.0
Q ss_pred CCCCCCCCc-----cccee-eeCCCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEE
Q 044860 33 NWNTSTPVC-----NWTGV-TCDVHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYV 106 (279)
Q Consensus 33 ~w~~~~~~~-----~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 106 (279)
.|.....+| .|.++ .|.. .+++.|+++++++.+ +|..+ +++|++|++++|.+. .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 565556667 68887 6753 389999999999986 66655 378999999999998 677 457999999
Q ss_pred EeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccc
Q 044860 107 SFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDF 186 (279)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 186 (279)
++++|.+++ +|. +.. +|++|++++|.++ .+|. .+++|++|++++|.+.+ +|. .+++|++|++++|.+
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 999999996 666 554 9999999999998 5776 58999999999999985 555 578999999999999
Q ss_pred cccCchhhcCCCCCcEEEccCccccccCchhccCCCCC-------CEEeccCCcccccCCccccCCCCCCEEEccCcccc
Q 044860 187 WGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAEL-------ELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
.+ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 66 555 55 89999999999998 5555 543 77 99999999998 67887778999999999999999
Q ss_pred cccchhhhcccc
Q 044860 260 GIISSSIFKLLL 271 (279)
Q Consensus 260 ~~~~~~~~~l~~ 271 (279)
+.+|..+..+..
T Consensus 244 ~~~p~~l~~l~~ 255 (571)
T 3cvr_A 244 SRIRESLSQQTA 255 (571)
T ss_dssp HHHHHHHHHHHH
T ss_pred CcCHHHHHHhhc
Confidence 999998887654
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=167.64 Aligned_cols=202 Identities=22% Similarity=0.249 Sum_probs=168.0
Q ss_pred CceEEEEecCCCcccccCCcc--CCCCCCCEEEccCCcccccCC----ccccCCCCCcEEEeecccCCCCCCccccCCCC
Q 044860 53 HKVAVLNVSGLNLTGTIPSQL--GNLSSLQSLDLSFNQLSGSIP----SAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSS 126 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 126 (279)
+++++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 359999999999998888887 899999999999999986544 34457999999999999999888889999999
Q ss_pred CcEEEccCCccccc--cC-hhhhcCCCCCcEEecccceecccCCc----cccCCCCCcEEEcccccccccCchhhcCC--
Q 044860 127 LQHLDFSFNTLSGE--IP-ANICSNLPFLEYISLSQNMFHGGIPS----TLSNCTYLQKLSLSLNDFWGAIPKEIGNL-- 197 (279)
Q Consensus 127 L~~L~l~~~~~~~~--~~-~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-- 197 (279)
|++|++++|++.+. ++ ...+..+++|++|++++|.++ .++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999987632 22 222367899999999999986 2232 24678999999999999977767766666
Q ss_pred -CCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 198 -TKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 198 -~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999998 5666653 7999999999999853 43 6788999999999999874
No 80
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.6e-21 Score=168.91 Aligned_cols=200 Identities=21% Similarity=0.247 Sum_probs=145.1
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
++++.|+++++.+.+. | .+..+++|++|++++|.+.+ ++ +..+++|++|++++|.+++. + +..+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4777888888877753 4 57777888888888887774 33 67778888888888877753 2 677788888888
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
++|.++ .++ +..+++|++|++++|.+.+. .+..+++|++|++++|...+.. .+..+++|+.|++++|.+++
T Consensus 114 ~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 114 DTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 888777 454 36778888888888877643 2667778888888887543444 35667778888888888775
Q ss_pred cCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 213 EIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
. + +..+++|++|++++|.+++. .+..+++|+.|++++|++++ +| ++.+++|++|+++
T Consensus 185 l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 185 L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 3 3 66777888888888887743 26777888888888888877 44 6777778877764
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.4e-23 Score=175.06 Aligned_cols=233 Identities=19% Similarity=0.281 Sum_probs=184.1
Q ss_pred CCcccceeeeCCCCCceEEEEecCCCcccccCCccCCC--CCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCC
Q 044860 39 PVCNWTGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGNL--SSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGA 116 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 116 (279)
.+..|....+. +..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 33468887764 336788999988776 3445555 7899999999998865554 66789999999999988754
Q ss_pred -CCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccc-eecc-cCCccccCCCCCcEEEcccc-ccccc-Cc
Q 044860 117 -FPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQN-MFHG-GIPSTLSNCTYLQKLSLSLN-DFWGA-IP 191 (279)
Q Consensus 117 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~n-~~~~~-~~ 191 (279)
++..+..+++|++|++++|.+++..+..+ ..+++|++|++++| .+.+ .++..+..+++|++|++++| .+.+. .+
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 77778889999999999999886666666 77999999999998 5654 25566778899999999999 77653 56
Q ss_pred hhhcCCC-CCcEEEccCc--ccc-ccCchhccCCCCCCEEeccCCc-ccccCCccccCCCCCCEEEccCcc-cccccchh
Q 044860 192 KEIGNLT-KLKELYLGRN--GLL-GEIPREFGNLAELELMSLPANK-LQGEIPQELGNLSRLEILQLSDNF-LTGIISSS 265 (279)
Q Consensus 192 ~~~~~~~-~L~~L~l~~n--~l~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~ 265 (279)
..+..++ +|+.|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 6678888 9999999999 454 3456677788999999999998 666677788899999999999994 44333346
Q ss_pred hhcccccceeeec
Q 044860 266 IFKLLLSIEFEIF 278 (279)
Q Consensus 266 ~~~l~~L~~l~l~ 278 (279)
+.++++|++|+++
T Consensus 268 l~~~~~L~~L~l~ 280 (336)
T 2ast_B 268 LGEIPTLKTLQVF 280 (336)
T ss_dssp GGGCTTCCEEECT
T ss_pred HhcCCCCCEEecc
Confidence 7889999999874
No 82
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-21 Score=152.44 Aligned_cols=186 Identities=22% Similarity=0.237 Sum_probs=130.8
Q ss_pred CCcccceeeeCCCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCC
Q 044860 39 PVCNWTGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFP 118 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 118 (279)
..|.|.++.|.. +.+. .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 5 C~C~~~~v~c~~------------~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYS------------QGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecC------------CCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 447787777753 2233 334333 3578888888888875555567788888888888888875555
Q ss_pred ccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCC
Q 044860 119 SFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLT 198 (279)
Q Consensus 119 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 198 (279)
..+..+++|++|++++|.+. .++...+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 56677888888888888887 66666557788888888888877755555567777777777777777655555566777
Q ss_pred CCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCC
Q 044860 199 KLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSR 247 (279)
Q Consensus 199 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 247 (279)
+|+.|++++|.+.+ .++.|++|++..|.+++.+|..+..++.
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 77777777776542 3456777777777777777766665554
No 83
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=9.6e-22 Score=152.80 Aligned_cols=181 Identities=22% Similarity=0.247 Sum_probs=155.7
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEeccc
Q 044860 80 QSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQ 159 (279)
Q Consensus 80 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 159 (279)
+.++.+++.+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence 56777777776 455433 468999999999999766677889999999999999998 77877778999999999999
Q ss_pred ceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCC
Q 044860 160 NMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIP 239 (279)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 239 (279)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 9998666677899999999999999997777777889999999999999999776667889999999999999775
Q ss_pred ccccCCCCCCEEEccCcccccccchhhhcccc
Q 044860 240 QELGNLSRLEILQLSDNFLTGIISSSIFKLLL 271 (279)
Q Consensus 240 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 271 (279)
..+++|+.|+++.|.+++.+|..++.++.
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 45678999999999999999988877664
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2e-23 Score=175.84 Aligned_cols=227 Identities=19% Similarity=0.154 Sum_probs=161.5
Q ss_pred CCceEEEEecCCCcccccC----CccCCCC-CCCEEEccCCcccccCCccccCC-----CCCcEEEeecccCCCCCCccc
Q 044860 52 SHKVAVLNVSGLNLTGTIP----SQLGNLS-SLQSLDLSFNQLSGSIPSAIFTT-----YTLKYVSFCRNQLSGAFPSFI 121 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~l 121 (279)
.++++.|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4468999999999886555 6677788 89999999998887666666654 889999999998886655533
Q ss_pred ----cCC-CCCcEEEccCCccccccChhh---hcC-CCCCcEEecccceecccC----CccccCCC-CCcEEEccccccc
Q 044860 122 ----FNK-SSLQHLDFSFNTLSGEIPANI---CSN-LPFLEYISLSQNMFHGGI----PSTLSNCT-YLQKLSLSLNDFW 187 (279)
Q Consensus 122 ----~~l-~~L~~L~l~~~~~~~~~~~~~---~~~-l~~L~~L~l~~~~~~~~~----~~~l~~~~-~L~~L~l~~n~~~ 187 (279)
..+ ++|++|++++|.+++..+..+ +.. .++|++|++++|.+.+.. +..+...+ +|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 344 789999999998874333222 233 368999999998887433 23334454 8999999999887
Q ss_pred ccCchhh----cCC-CCCcEEEccCcccccc----CchhccC-CCCCCEEeccCCcccccCC----ccccCCCCCCEEEc
Q 044860 188 GAIPKEI----GNL-TKLKELYLGRNGLLGE----IPREFGN-LAELELMSLPANKLQGEIP----QELGNLSRLEILQL 253 (279)
Q Consensus 188 ~~~~~~~----~~~-~~L~~L~l~~n~l~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~~----~~l~~~~~L~~L~l 253 (279)
+..+..+ ... ++|+.|++++|.+++. ++..+.. .++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 6665433 344 5899999999988763 3344444 4589999999998875433 34567788999999
Q ss_pred cCcccccccc-------hhhhcccccceeeec
Q 044860 254 SDNFLTGIIS-------SSIFKLLLSIEFEIF 278 (279)
Q Consensus 254 ~~n~l~~~~~-------~~~~~l~~L~~l~l~ 278 (279)
++|.+.+..+ ..+..+++|++|+++
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 9998543332 345566777777654
No 85
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=2.3e-21 Score=174.53 Aligned_cols=213 Identities=22% Similarity=0.206 Sum_probs=170.2
Q ss_pred EecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccc
Q 044860 59 NVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLS 138 (279)
Q Consensus 59 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (279)
+-++.+++ .+|..+. +++++|++++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|+++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 33444455 5666553 57999999999999767778999999999999999999777788999999999999999998
Q ss_pred cccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccc-cCchhhcCCCCCcEEEccCccccccCchh
Q 044860 139 GEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWG-AIPKEIGNLTKLKELYLGRNGLLGEIPRE 217 (279)
Q Consensus 139 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 217 (279)
.++...|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..|..+..+++|+.|++++|.+++..+..
T Consensus 114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 8888888999999999999999987767779999999999999999865 45778889999999999999998777776
Q ss_pred ccCCCC----CCEEeccCCcccccCCccccCCCCCCEEEccCccccc-ccchhhhcccccceee
Q 044860 218 FGNLAE----LELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG-IISSSIFKLLLSIEFE 276 (279)
Q Consensus 218 l~~~~~----L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~ 276 (279)
+..+.+ ...++++.|.+....+..+ ....+..+++++|.... ..+..+..+..++...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~ 255 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 255 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEE
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccc
Confidence 654433 3478899999875544443 34556778888886553 3344566666665444
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=7.3e-23 Score=172.44 Aligned_cols=222 Identities=19% Similarity=0.135 Sum_probs=172.9
Q ss_pred EEEecCCCcccccCCccCCCCCCCEEEccCCcccccCC----ccccCCC-CCcEEEeecccCCCCCCccccCC-----CC
Q 044860 57 VLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP----SAIFTTY-TLKYVSFCRNQLSGAFPSFIFNK-----SS 126 (279)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~ 126 (279)
...++.+++.+.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788899998888877777779999999999986665 6777888 89999999999987777666654 99
Q ss_pred CcEEEccCCccccccChhh---hcCC-CCCcEEecccceecccCCccc----cC-CCCCcEEEcccccccccCc----hh
Q 044860 127 LQHLDFSFNTLSGEIPANI---CSNL-PFLEYISLSQNMFHGGIPSTL----SN-CTYLQKLSLSLNDFWGAIP----KE 193 (279)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~---~~~l-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~n~~~~~~~----~~ 193 (279)
|++|++++|.+++..+..+ +..+ ++|++|++++|.+.+..+..+ .. .++|++|++++|.+.+... ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999985444432 2445 899999999999986554433 33 3699999999999975443 34
Q ss_pred hcCCC-CCcEEEccCccccccCchh----ccCC-CCCCEEeccCCccccc----CCccccC-CCCCCEEEccCccccccc
Q 044860 194 IGNLT-KLKELYLGRNGLLGEIPRE----FGNL-AELELMSLPANKLQGE----IPQELGN-LSRLEILQLSDNFLTGII 262 (279)
Q Consensus 194 ~~~~~-~L~~L~l~~n~l~~~~~~~----l~~~-~~L~~L~l~~n~l~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~ 262 (279)
+...+ +|+.|++++|.+++..+.. +... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 8999999999998766543 3445 5999999999999853 3444444 469999999999998765
Q ss_pred chh----hhcccccceeeec
Q 044860 263 SSS----IFKLLLSIEFEIF 278 (279)
Q Consensus 263 ~~~----~~~l~~L~~l~l~ 278 (279)
+.. +..+++|+.|+++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEE
T ss_pred HHHHHHHHhcCCCccEEEec
Confidence 533 4677889999874
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=9.2e-21 Score=158.87 Aligned_cols=233 Identities=16% Similarity=0.113 Sum_probs=174.1
Q ss_pred CcccceeeeCC---------CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCC-ccccCCCCCcE-EEe
Q 044860 40 VCNWTGVTCDV---------HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP-SAIFTTYTLKY-VSF 108 (279)
Q Consensus 40 ~~~~~~~~~~~---------~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l 108 (279)
.|.+..+.|.. -.+++++|++++|++....+..|.++++|++|++++|.+.+.++ ..|..++++.+ +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 36677777742 23578999999999996666789999999999999999865555 46778888776 556
Q ss_pred ecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEeccc-ceecccCCccccCC-CCCcEEEcccccc
Q 044860 109 CRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQ-NMFHGGIPSTLSNC-TYLQKLSLSLNDF 186 (279)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~n~~ 186 (279)
..|++....+..+..+++|++|++++|.+. .++...+....++..+++.+ +.+....+..+..+ ..++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678888777888899999999999999998 66665556677788888865 45554445556665 4688999999999
Q ss_pred cccCchhhcCCCCCcEEEccC-ccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchh
Q 044860 187 WGAIPKEIGNLTKLKELYLGR-NGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSS 265 (279)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 265 (279)
....+..+ ...+|+.+++.+ |.++...+..|..+++|++|++++|+++. +|. ..+.+|+.|.+.++.--..+|+
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCC-
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCC-
Confidence 65554444 456799999975 56664445678899999999999999984 443 2356677777766643345553
Q ss_pred hhcccccceeeec
Q 044860 266 IFKLLLSIEFEIF 278 (279)
Q Consensus 266 ~~~l~~L~~l~l~ 278 (279)
+..+++|+.+++.
T Consensus 242 l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 LEKLVALMEASLT 254 (350)
T ss_dssp TTTCCSCCEEECS
T ss_pred chhCcChhhCcCC
Confidence 7888889888763
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.3e-23 Score=182.45 Aligned_cols=205 Identities=15% Similarity=0.140 Sum_probs=124.3
Q ss_pred CCCCCCCEEEccCCcccccCCcccc-----CCCCCcEEEeecccCCCC----CCccccCCCCCcEEEccCCccccc----
Q 044860 74 GNLSSLQSLDLSFNQLSGSIPSAIF-----TTYTLKYVSFCRNQLSGA----FPSFIFNKSSLQHLDFSFNTLSGE---- 140 (279)
Q Consensus 74 ~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~---- 140 (279)
..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 3345555555555554432222222 234566666666655532 344455566777777777766532
Q ss_pred cChhhhcCCCCCcEEecccceeccc----CCccccCCCCCcEEEcccccccccCchhhc-----CCCCCcEEEccCcccc
Q 044860 141 IPANICSNLPFLEYISLSQNMFHGG----IPSTLSNCTYLQKLSLSLNDFWGAIPKEIG-----NLTKLKELYLGRNGLL 211 (279)
Q Consensus 141 ~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-----~~~~L~~L~l~~n~l~ 211 (279)
+...++..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.++
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 326 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence 2233333566777777777766532 344555677777777777776443333222 2257778888877776
Q ss_pred cc----CchhccCCCCCCEEeccCCcccccCCcccc-----CCCCCCEEEccCccccc----ccchhhhcccccceeeec
Q 044860 212 GE----IPREFGNLAELELMSLPANKLQGEIPQELG-----NLSRLEILQLSDNFLTG----IISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 212 ~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~l~ 278 (279)
+. ++..+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++ .+|..+..+++|++|+++
T Consensus 327 ~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 327 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred hHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECC
Confidence 54 345556678888888888887654333332 26788888888888875 677778888888888764
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=4.4e-23 Score=175.26 Aligned_cols=214 Identities=18% Similarity=0.204 Sum_probs=170.3
Q ss_pred CCCCceEEEEecCCCc---ccccCCcc-------CCCCCCCEEEccCCcccc----cCCccccCCCCCcEEEeecccCCC
Q 044860 50 VHSHKVAVLNVSGLNL---TGTIPSQL-------GNLSSLQSLDLSFNQLSG----SIPSAIFTTYTLKYVSFCRNQLSG 115 (279)
Q Consensus 50 ~~~~~l~~l~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 115 (279)
...++++.|++++|.+ .+.+|..+ ..+++|++|++++|.+.+ .++..+..+++|++|++++|.+..
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 3466999999999644 34444433 789999999999999986 366778899999999999999864
Q ss_pred CCCc----cccCC---------CCCcEEEccCCcccc-ccCh--hhhcCCCCCcEEecccceecc-----cCCccccCCC
Q 044860 116 AFPS----FIFNK---------SSLQHLDFSFNTLSG-EIPA--NICSNLPFLEYISLSQNMFHG-----GIPSTLSNCT 174 (279)
Q Consensus 116 ~~~~----~l~~l---------~~L~~L~l~~~~~~~-~~~~--~~~~~l~~L~~L~l~~~~~~~-----~~~~~l~~~~ 174 (279)
..+. .+..+ ++|++|++++|.+.+ .++. ..+..+++|++|++++|.+.. ..+..+..++
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence 3333 33334 899999999999873 3332 233678999999999998862 2344788899
Q ss_pred CCcEEEccccccc----ccCchhhcCCCCCcEEEccCcccccc----Cchhcc--CCCCCCEEeccCCcccc----cCCc
Q 044860 175 YLQKLSLSLNDFW----GAIPKEIGNLTKLKELYLGRNGLLGE----IPREFG--NLAELELMSLPANKLQG----EIPQ 240 (279)
Q Consensus 175 ~L~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~--~~~~L~~L~l~~n~l~~----~~~~ 240 (279)
+|++|++++|.+. ..++..+..+++|+.|++++|.+++. ++..+. .+++|++|++++|.++. .+|.
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~ 296 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT 296 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence 9999999999985 55677888899999999999999865 456663 38999999999999986 3676
Q ss_pred cc-cCCCCCCEEEccCcccccccc
Q 044860 241 EL-GNLSRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 241 ~l-~~~~~L~~L~l~~n~l~~~~~ 263 (279)
.+ .++++|+.|++++|++++..+
T Consensus 297 ~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 297 VIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHhcCCCceEEEccCCcCCcchh
Confidence 66 668999999999999997764
No 90
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=5.7e-20 Score=164.08 Aligned_cols=197 Identities=29% Similarity=0.334 Sum_probs=103.1
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
+++.|++++|.+. .+|. .+++|++|++++|.+. .+|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 5555555555555 2333 3455566666665554 3333 44555555555555542 222 23344444444
Q ss_pred CCccccccChhhhcCCCCCcEEecccceecccCCcc---cc--------------CCCCCcEEEcccccccccCchhhc-
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPST---LS--------------NCTYLQKLSLSLNDFWGAIPKEIG- 195 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---l~--------------~~~~L~~L~l~~n~~~~~~~~~~~- 195 (279)
+|.++ .+|. .+++|++|++++|.+.+ +|.. +. .+++|+.|++++|.+.+ +|..+.
T Consensus 130 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~ 202 (622)
T 3g06_A 130 GNQLT-SLPV----LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSE 202 (622)
T ss_dssp SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTT
T ss_pred CCCCC-cCCC----CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccch
Confidence 44443 2332 12444444444444432 1111 11 11455555555555432 111110
Q ss_pred ----------------CCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccc
Q 044860 196 ----------------NLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 196 ----------------~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
.+++|+.|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.++
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC
Confidence 12456666666666653 33 34467777777777776 3444 4577888888888887
Q ss_pred cccchhhhcccccceeeec
Q 044860 260 GIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 260 ~~~~~~~~~l~~L~~l~l~ 278 (279)
.+|..+..+++|+.|+++
T Consensus 275 -~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 275 -RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp -SCCGGGGGSCTTCEEECC
T ss_pred -cCCHHHhhccccCEEEec
Confidence 456778888888888764
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.4e-20 Score=157.83 Aligned_cols=216 Identities=19% Similarity=0.131 Sum_probs=168.6
Q ss_pred EEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCC-ccccCCCCCcE-EEcc
Q 044860 56 AVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFP-SFIFNKSSLQH-LDFS 133 (279)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l~ 133 (279)
++++-++++++ .+|..+. +++++|++++|+++...+..|..+++|++|+|++|.+.+.++ ..+..++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45778888888 5676553 689999999999985555678999999999999999876555 45778888876 5666
Q ss_pred CCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccc-ccccccCchhhcCCC-CCcEEEccCcccc
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSL-NDFWGAIPKEIGNLT-KLKELYLGRNGLL 211 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~l~~n~l~ 211 (279)
.|++. .+++..|..+++|++|++.+|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 78888 78777779999999999999999866666666777888999866 456455555566654 5899999999998
Q ss_pred ccCchhccCCCCCCEEeccC-CcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceee
Q 044860 212 GEIPREFGNLAELELMSLPA-NKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFE 276 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 276 (279)
...+..+ ...+|+++++.+ |.++...+..|..+++|+.|++++|+++...+..+..+++|+.++
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~ 232 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS 232 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTT
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhcc
Confidence 5444444 567899999975 677644456789999999999999999977666666666666543
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.7e-20 Score=153.15 Aligned_cols=169 Identities=23% Similarity=0.330 Sum_probs=113.6
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
++++.|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ .+.+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEEC
Confidence 3677777777777633 3 366777777777777777643 33 7777777777777777763 233677777777777
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
++|.+. .+ ..+ ..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 120 ~~n~i~-~~-~~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 120 EHNGIS-DI-NGL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTSCCC-CC-GGG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCcCC-CC-hhh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 777776 33 233 5677777777777777643 456677777777777777744433 6667777777777777764
Q ss_pred cCchhccCCCCCCEEeccCCcccc
Q 044860 213 EIPREFGNLAELELMSLPANKLQG 236 (279)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~n~l~~ 236 (279)
. + .+..+++|+.|++++|.+..
T Consensus 193 l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 L-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-h-hhccCCCCCEEECcCCcccC
Confidence 3 2 36667777777777777653
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.3e-22 Score=176.23 Aligned_cols=224 Identities=23% Similarity=0.229 Sum_probs=127.7
Q ss_pred ceEEEEecCCCccc----ccCCccCCCCCCCEEEccCCcccccCCcccc-----CCCCCcEEEeecccCCCCC----Ccc
Q 044860 54 KVAVLNVSGLNLTG----TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIF-----TTYTLKYVSFCRNQLSGAF----PSF 120 (279)
Q Consensus 54 ~l~~l~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~ 120 (279)
++++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57778887777763 3466677777888888887776643333222 2456777777777766432 444
Q ss_pred ccCCCCCcEEEccCCccccccChhh----hcCCCCCcEEecccceeccc----CCccccCCCCCcEEEcccccccccC--
Q 044860 121 IFNKSSLQHLDFSFNTLSGEIPANI----CSNLPFLEYISLSQNMFHGG----IPSTLSNCTYLQKLSLSLNDFWGAI-- 190 (279)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~-- 190 (279)
+..+++|++|++++|.+.+..+..+ ....++|++|++++|.+... ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 5556777777777777653322222 12355777777777766532 3445556677777777777664322
Q ss_pred ---chhhcCCCCCcEEEccCcccccc----CchhccCCCCCCEEeccCCcccccCCccc-----cCCCCCCEEEccCccc
Q 044860 191 ---PKEIGNLTKLKELYLGRNGLLGE----IPREFGNLAELELMSLPANKLQGEIPQEL-----GNLSRLEILQLSDNFL 258 (279)
Q Consensus 191 ---~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l 258 (279)
+..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 22222456677777777666543 34445556666666666666543222111 1124555555555555
Q ss_pred ccc----cchhhhcccccceeee
Q 044860 259 TGI----ISSSIFKLLLSIEFEI 277 (279)
Q Consensus 259 ~~~----~~~~~~~l~~L~~l~l 277 (279)
++. ++..+..+++|++|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEc
Confidence 433 3344444555555554
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=6.9e-20 Score=143.48 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=87.8
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCC-ccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecc
Q 044860 80 QSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFP-SFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158 (279)
Q Consensus 80 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (279)
+++++++|.+. .+|..+. ..+++|++++|.+++..+ ..+..+++|++|++++|.++ .++...|.++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 46677777665 4454332 235666666666664433 23556666666666666665 4444444566666666666
Q ss_pred cceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccc
Q 044860 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
+|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66665444445555666666666666665555555555556666666666665555555555566666666666554
No 95
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=4.2e-21 Score=166.15 Aligned_cols=184 Identities=26% Similarity=0.372 Sum_probs=88.8
Q ss_pred ceEEEEecCCCcccccCCccCCCCCC-------------CEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSL-------------QSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSF 120 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 120 (279)
++++|++++|.+.+..|..++++.+| ++|++++|.+.+ +|. ..++|++|++++|.+++ +|..
T Consensus 35 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~~ 109 (454)
T 1jl5_A 35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPEL 109 (454)
T ss_dssp CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCCC
T ss_pred chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-cccc
Confidence 55555555555555555555555543 666666665552 222 12456666666666654 3332
Q ss_pred ccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCC
Q 044860 121 IFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKL 200 (279)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 200 (279)
..+|++|++++|.+. .++. ..++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ .|.. ..+|
T Consensus 110 ---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L 175 (454)
T 1jl5_A 110 ---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSL 175 (454)
T ss_dssp ---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTC
T ss_pred ---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccc
Confidence 244445555444443 2221 01345555555555542 33 35555555555555555432 2221 1244
Q ss_pred cEEEccCccccccCchhccCCCCC--------------------CEEeccCCcccccCCccccCCCCCCEEEccCccccc
Q 044860 201 KELYLGRNGLLGEIPREFGNLAEL--------------------ELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTG 260 (279)
Q Consensus 201 ~~L~l~~n~l~~~~~~~l~~~~~L--------------------~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 260 (279)
+.|++++|.+++ +| .+..+++| ++|++++|.++ .+|. +..+++|+.|++++|.+++
T Consensus 176 ~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 176 EFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred cEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 455555544443 22 34444444 44444444444 3332 4455555555555555553
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.8e-19 Score=142.06 Aligned_cols=164 Identities=23% Similarity=0.251 Sum_probs=121.9
Q ss_pred CCCCCCCCcccceeeeCCCCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeeccc
Q 044860 33 NWNTSTPVCNWTGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQ 112 (279)
Q Consensus 33 ~w~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (279)
.|..+...|.|.++.|.. +.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 455567789998888853 2233 4454343 778888888888887777778888888888888888
Q ss_pred CCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCch
Q 044860 113 LSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPK 192 (279)
Q Consensus 113 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 192 (279)
+....+..+..+++|++|++++|.++ .++...|..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+.
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 87555556677888888888888887 666666677888888888888877 6677777778888888888877655556
Q ss_pred hhcCCCCCcEEEccCcccccc
Q 044860 193 EIGNLTKLKELYLGRNGLLGE 213 (279)
Q Consensus 193 ~~~~~~~L~~L~l~~n~l~~~ 213 (279)
.+..+++|+.|++++|.+...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 677777788888877776643
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1e-19 Score=142.57 Aligned_cols=152 Identities=22% Similarity=0.196 Sum_probs=101.8
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEeccc
Q 044860 80 QSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQ 159 (279)
Q Consensus 80 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 159 (279)
+.++.+++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|.+. .+.+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCC
Confidence 46677777766 4555443 56777777777777555556777777777777777776 44333346777777777777
Q ss_pred ceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccc
Q 044860 160 NMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776444445566777777777777776666666666677777777777776555556666677777777777664
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=2.1e-19 Score=160.47 Aligned_cols=199 Identities=27% Similarity=0.291 Sum_probs=131.4
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
..+++++|++++|.+.+ +|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.++. +|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 34688899999988873 444 56778888888887763 333 34455555555554442 2221 2344444
Q ss_pred EccCCccccccChhh----------------hcCCCCCcEEecccceecccCCcccc-----------------CCCCCc
Q 044860 131 DFSFNTLSGEIPANI----------------CSNLPFLEYISLSQNMFHGGIPSTLS-----------------NCTYLQ 177 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~----------------~~~l~~L~~L~l~~~~~~~~~~~~l~-----------------~~~~L~ 177 (279)
++++|.+. .+|... -..+++|+.|++++|.+.+ +|..+. .+++|+
T Consensus 147 ~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~ 224 (622)
T 3g06_A 147 SVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLK 224 (622)
T ss_dssp ECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred ECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCC
Confidence 44444433 121110 0112555666666655542 221111 136788
Q ss_pred EEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcc
Q 044860 178 KLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNF 257 (279)
Q Consensus 178 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 257 (279)
+|++++|.+.+ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 99999998854 44 45688999999999998 4454 5689999999999998 778889999999999999999
Q ss_pred cccccchhhhccccc
Q 044860 258 LTGIISSSIFKLLLS 272 (279)
Q Consensus 258 l~~~~~~~~~~l~~L 272 (279)
+++.+|..+..++..
T Consensus 296 l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 296 LSERTLQALREITSA 310 (622)
T ss_dssp CCHHHHHHHHHHHHS
T ss_pred CCCcCHHHHHhcccc
Confidence 999988877766543
No 99
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.7e-19 Score=154.78 Aligned_cols=203 Identities=25% Similarity=0.301 Sum_probs=98.4
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCC----------------
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSG---------------- 115 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------- 115 (279)
.+++++|++++|.+.+ +|..+ .+|++|++++|.+.+ +| .+..+++|++|++++|.+++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n 225 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNN 225 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCC
Confidence 3456666666666553 33322 355555665555553 33 35555555555555555442
Q ss_pred ---CCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccc--cC
Q 044860 116 ---AFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWG--AI 190 (279)
Q Consensus 116 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~ 190 (279)
.+| .+..+++|++|++++|.+. .+|. .+++|++|++++|.+.+ +|.. +++|++|++++|.+.+ ..
T Consensus 226 ~l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 226 ILEELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC
T ss_pred cCCccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc
Confidence 223 2444444444554444444 2222 12344444444444332 2211 1345555555554433 11
Q ss_pred chhh-------------cCC-CCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCc
Q 044860 191 PKEI-------------GNL-TKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDN 256 (279)
Q Consensus 191 ~~~~-------------~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 256 (279)
|..+ ..+ ++|+.|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|+.|++++|
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCC
Confidence 1110 111 356666666666653 3322 467777777777776 3444 3577888888888
Q ss_pred cccc--ccchhhhcc-------------cccceeeec
Q 044860 257 FLTG--IISSSIFKL-------------LLSIEFEIF 278 (279)
Q Consensus 257 ~l~~--~~~~~~~~l-------------~~L~~l~l~ 278 (279)
++++ .+|..+..+ ++|++|+++
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 8877 667777666 667777653
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=7.8e-20 Score=162.95 Aligned_cols=171 Identities=24% Similarity=0.361 Sum_probs=133.0
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEE
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLD 131 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (279)
.++++.|+++++.+.. ++ .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.+ + +.+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEE
Confidence 3478888888888874 33 47888889999999888875433 7888889999998888874 2 3677888889999
Q ss_pred ccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 132 FSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
+++|.+. .++ .+ ..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.
T Consensus 116 Ls~N~l~-~l~-~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCC-CCG-GG-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCC-CCc-cc-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 9888887 443 33 6788888888888888743 567888888888888888865544 778888888888888887
Q ss_pred ccCchhccCCCCCCEEeccCCccccc
Q 044860 212 GEIPREFGNLAELELMSLPANKLQGE 237 (279)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~n~l~~~ 237 (279)
+. ..+..+++|+.|+|++|.+.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 54 4577888888888888888754
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=5.2e-20 Score=154.88 Aligned_cols=176 Identities=27% Similarity=0.204 Sum_probs=139.5
Q ss_pred EEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCcccc-CCCCCcEEEeecccCCCCCCccccCCCCCcEEEccC
Q 044860 56 AVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIF-TTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSF 134 (279)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (279)
+.++++++++. .+|..+. +.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 36788888887 4666554 4689999999999866666676 899999999999999877777888999999999999
Q ss_pred CccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhh---cCCCCCcEEEccCcccc
Q 044860 135 NTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEI---GNLTKLKELYLGRNGLL 211 (279)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~l~ 211 (279)
|.+. .++...|.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.++
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9988 7777767889999999999999887777888888899999999888865544444 45788888888888887
Q ss_pred ccCchhccCCCC--CCEEeccCCccc
Q 044860 212 GEIPREFGNLAE--LELMSLPANKLQ 235 (279)
Q Consensus 212 ~~~~~~l~~~~~--L~~L~l~~n~l~ 235 (279)
+..+..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 655556666665 377888888775
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.6e-19 Score=140.18 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=132.3
Q ss_pred EEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCc
Q 044860 57 VLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNT 136 (279)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (279)
.++.+++.+. .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4566666676 4565554 689999999999987667788899999999999999998888899999999999999999
Q ss_pred cccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 137 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
++ .++...|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 98 8888888899999999999999998878889999999999999999987777788889999999999998753
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.9e-19 Score=151.44 Aligned_cols=177 Identities=25% Similarity=0.255 Sum_probs=147.7
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCcccc-CCCCCcEEEccCCccccccChhhhcCCCCCcEEecc
Q 044860 80 QSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIF-NKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158 (279)
Q Consensus 80 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (279)
+.++++++.+. .+|..+. ..++.|+|++|.+++..+..+. .+++|++|++++|.+. .++...|.++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 68899999887 5676543 4589999999999976667676 8999999999999998 6776666899999999999
Q ss_pred cceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhc---cCCCCCCEEeccCCccc
Q 044860 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREF---GNLAELELMSLPANKLQ 235 (279)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~L~~L~l~~n~l~ 235 (279)
+|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+++..+..+ ..+++|++|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987777788999999999999999988888889999999999999999986544455 56899999999999998
Q ss_pred ccCCccccCCCC--CCEEEccCccccc
Q 044860 236 GEIPQELGNLSR--LEILQLSDNFLTG 260 (279)
Q Consensus 236 ~~~~~~l~~~~~--L~~L~l~~n~l~~ 260 (279)
...+..+..++. ++.|++++|++.-
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 555566777776 4889999999874
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5.4e-19 Score=144.26 Aligned_cols=175 Identities=21% Similarity=0.261 Sum_probs=148.6
Q ss_pred cCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCC
Q 044860 73 LGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFL 152 (279)
Q Consensus 73 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (279)
+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTC
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCC
Confidence 4567899999999999873 44 48889999999999999985444 889999999999999997 4544 4889999
Q ss_pred cEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCC
Q 044860 153 EYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPAN 232 (279)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 232 (279)
++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999999753 5688899999999999999655 567889999999999999986544 889999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCccccccc
Q 044860 233 KLQGEIPQELGNLSRLEILQLSDNFLTGII 262 (279)
Q Consensus 233 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 262 (279)
.+++ ++ .+..+++|+.|++++|+++...
T Consensus 189 ~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 189 HISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred cCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 9984 44 4889999999999999987543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=4.1e-19 Score=158.32 Aligned_cols=189 Identities=22% Similarity=0.283 Sum_probs=145.5
Q ss_pred EEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCcc
Q 044860 58 LNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTL 137 (279)
Q Consensus 58 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 137 (279)
+.+..+.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+.+..+ +..+++|++|++++|.+
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 3444444443322 456788888999988887 344 57888999999999998885444 77889999999999988
Q ss_pred ccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchh
Q 044860 138 SGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPRE 217 (279)
Q Consensus 138 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 217 (279)
. .++ .+ ..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..|
T Consensus 100 ~-~l~-~l-~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 100 K-DLS-SL-KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp C-CCT-TS-TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred C-CCh-hh-ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 7 444 33 778899999999988874 2 4578888999999999988554 567788889999999998886555
Q ss_pred ccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccc
Q 044860 218 FGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 218 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 263 (279)
+..+++|+.|+|++|.+++ + ..+..+++|+.|+|++|++.+...
T Consensus 171 l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCcc
Confidence 7888899999999998874 3 357888999999999998876543
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.1e-18 Score=137.52 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=119.5
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecc
Q 044860 79 LQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158 (279)
Q Consensus 79 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (279)
-+.++.+++.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 456777777776 5665443 78889999999888777888888888999999888887 7777777888888888888
Q ss_pred cceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccc
Q 044860 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQG 236 (279)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 236 (279)
+|.+....+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|++|++.+|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88887666666778888888888888874 566677777888888888888876655667777888888888887763
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5.2e-19 Score=136.12 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=107.3
Q ss_pred cCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCc
Q 044860 98 FTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQ 177 (279)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 177 (279)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+ ..+ ..+++|++|++++|.+.+..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhh-hcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44556666666666665 333 4566666777777666554 22 233 5677777777777777665666777788888
Q ss_pred EEEcccccccccCchhhcCCCCCcEEEccCcc-ccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCc
Q 044860 178 KLSLSLNDFWGAIPKEIGNLTKLKELYLGRNG-LLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDN 256 (279)
Q Consensus 178 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 256 (279)
+|++++|.+.+..+..+..+++|+.|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 88888888876677778888888888888887 55 344 57778888888888888874 33 5778888888888888
Q ss_pred cccc
Q 044860 257 FLTG 260 (279)
Q Consensus 257 ~l~~ 260 (279)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 8754
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=6.9e-19 Score=137.77 Aligned_cols=158 Identities=22% Similarity=0.215 Sum_probs=140.2
Q ss_pred CcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcc
Q 044860 103 LKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLS 182 (279)
Q Consensus 103 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 182 (279)
-+.++++++.++ .+|..+ ...+++|++++|.+++..+...|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358999999988 567655 35678999999999844466666899999999999999997777789999999999999
Q ss_pred cccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCccccccc
Q 044860 183 LNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGII 262 (279)
Q Consensus 183 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 262 (279)
+|.+.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++....
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99998888888999999999999999999888899999999999999999999888899999999999999999998654
Q ss_pred c
Q 044860 263 S 263 (279)
Q Consensus 263 ~ 263 (279)
+
T Consensus 170 ~ 170 (220)
T 2v70_A 170 Y 170 (220)
T ss_dssp G
T ss_pred c
Confidence 4
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2e-18 Score=152.48 Aligned_cols=172 Identities=23% Similarity=0.299 Sum_probs=144.4
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEec
Q 044860 78 SLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISL 157 (279)
Q Consensus 78 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 157 (279)
+++.|++++|.+.+ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.++ .+|. + .+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEEC
Confidence 89999999999985 776553 78999999999998 666 45799999999999998 5877 4 43 9999999
Q ss_pred ccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccccc
Q 044860 158 SQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGE 237 (279)
Q Consensus 158 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 237 (279)
++|.+.+ +|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.+++ +|. +. ++|++|++++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9999985 555 67999999999999965 554 57899999999999986 565 55 89999999999998 5
Q ss_pred CCccccCCCCC-------CEEEccCcccccccchhhhcccccceeeec
Q 044860 238 IPQELGNLSRL-------EILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 238 ~~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
+|. +.. +| +.|++++|.++. +|..++.+++|+.|+++
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILE 238 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECC
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEee
Confidence 666 543 67 999999999995 77788889999999875
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.1e-20 Score=172.10 Aligned_cols=225 Identities=20% Similarity=0.222 Sum_probs=120.6
Q ss_pred CCChhHHHHHHHHHHhcCCCCCccccCCCCC-CCCCcccceeeeCCCCCceEEEEecCCCcccccCCccCCCCCCCEEEc
Q 044860 6 GTITTDRDALLALKAHITHDPTNFFAKNWNT-STPVCNWTGVTCDVHSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDL 84 (279)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 84 (279)
+..+.+..+++++..++......... .|.. ......|.+..+.. ++++.+++.++.+.. .+..+.....|+.+.+
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i 203 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSI 203 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccc
Confidence 34467778899998887533333333 5533 34446687766643 478889998887774 3333333333333332
Q ss_pred -----cCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEeccc
Q 044860 85 -----SFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQ 159 (279)
Q Consensus 85 -----~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 159 (279)
..|.+. ..+..+..+..|+.|+|++|.+. .++..+..+++|++|++++|.++ .+|..+ .++++|++|++++
T Consensus 204 ~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 204 DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSH 279 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTT
T ss_pred cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcC
Confidence 223333 45667788888999999888887 77777778888999999998888 788776 7888899999998
Q ss_pred ceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCC-CCEEeccCCcccccC
Q 044860 160 NMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAE-LELMSLPANKLQGEI 238 (279)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~l~~n~l~~~~ 238 (279)
|.+. .+|..+..+++|++|++++|.+ +.+|..|..+++|+.|+|++|.+.+..|..+..... +..+++.+|.+++.+
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 8888 6788888888899999998888 466777888888999999998888776665543211 123556666666555
Q ss_pred Cc
Q 044860 239 PQ 240 (279)
Q Consensus 239 ~~ 240 (279)
|.
T Consensus 358 p~ 359 (727)
T 4b8c_D 358 PH 359 (727)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.5e-18 Score=133.52 Aligned_cols=152 Identities=16% Similarity=0.200 Sum_probs=77.5
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEE
Q 044860 76 LSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYI 155 (279)
Q Consensus 76 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 155 (279)
+++|++|++++|.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEE
Confidence 344455555554444 233 3444455555555554332 12244445555555555555543333333 445555555
Q ss_pred ecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccc
Q 044860 156 SLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 156 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
++++|.+.+..+..+..+++|++|++++|...+..+ .+..+++|+.|++++|.+++. + .+..+++|++|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 555555544444445555566666666655113333 455666677777777766542 2 5566677777777777664
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=2.2e-19 Score=144.38 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=120.7
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
+++.+++.++.+.+. + .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 455566677776643 2 4667788888888888776 444 57778888888888888874433 7778888888888
Q ss_pred CCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccccc
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGE 213 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 213 (279)
+|.+. .++... . ++|++|++++|.+.+. ..+..+++|++|++++|.+.+. + .+..+++|+.|++++|.+++.
T Consensus 94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLK-NLNGIP--S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCS-CCTTCC--C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccC-CcCccc--c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 88887 455432 2 7788888888887642 3477778888888888877544 3 566777888888888887755
Q ss_pred CchhccCCCCCCEEeccCCccccc
Q 044860 214 IPREFGNLAELELMSLPANKLQGE 237 (279)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~n~l~~~ 237 (279)
..+..+++|+.|++++|.+...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5677778888888888877643
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=2.6e-21 Score=171.40 Aligned_cols=197 Identities=19% Similarity=0.135 Sum_probs=159.8
Q ss_pred CCCCCCCEEEccCCcccccCCccccCCCCCcEEEeeccc-------------CCCCCCccccCCCCCcEEE-ccCCcccc
Q 044860 74 GNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQ-------------LSGAFPSFIFNKSSLQHLD-FSFNTLSG 139 (279)
Q Consensus 74 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~ 139 (279)
...++|+.|++++|.+. .+|..++.+++|+.|++.+|. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56789999999999987 789999999999999986653 3455667777788888887 5555433
Q ss_pred ccChhhh-----c--CCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 140 EIPANIC-----S--NLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 140 ~~~~~~~-----~--~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
.++...+ . ....|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 2221000 1 12358999999999984 666 999999999999999995 778899999999999999999986
Q ss_pred cCchhccCCCCCCEEeccCCcccccC-CccccCCCCCCEEEccCcccccccch---hhhcccccceeee
Q 044860 213 EIPREFGNLAELELMSLPANKLQGEI-PQELGNLSRLEILQLSDNFLTGIISS---SIFKLLLSIEFEI 277 (279)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~l~l 277 (279)
+| .+..+++|++|++++|.+++.. |..+..+++|+.|++++|++++.+|. .+..+++|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 56 8899999999999999999766 89999999999999999999987653 3456899999874
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.8e-18 Score=139.11 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=105.1
Q ss_pred CceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEc
Q 044860 53 HKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDF 132 (279)
Q Consensus 53 ~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (279)
++++.|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++ ++... . ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEEC
T ss_pred CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEc
Confidence 477788888887773 34 577778888888888877743 33 7778888888888887774 33322 2 77888888
Q ss_pred cCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccc
Q 044860 133 SFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLG 212 (279)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 212 (279)
++|.++ .++ .+ ..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 114 ~~N~l~-~~~-~l-~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 114 DNNELR-DTD-SL-IHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CSSCCS-BSG-GG-TTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cCCccC-CCh-hh-cCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 888877 443 33 6788888888888887643 3 577778888888888877555 556777788888888887764
Q ss_pred c
Q 044860 213 E 213 (279)
Q Consensus 213 ~ 213 (279)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 4
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=4.6e-17 Score=124.67 Aligned_cols=129 Identities=25% Similarity=0.293 Sum_probs=85.3
Q ss_pred cEEEeecccCCCCCCccccCCCCCcEEEccCCccccccCh-hhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcc
Q 044860 104 KYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPA-NICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLS 182 (279)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 182 (279)
+.++++++.++ .+|..+. .++++|++++|.+. .++. ..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777665 5555443 26777777777776 3333 334667777777777777766666667777777777777
Q ss_pred cccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccc
Q 044860 183 LNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQG 236 (279)
Q Consensus 183 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 236 (279)
+|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 777766666666666677777777777766666666666677777777776653
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.1e-17 Score=137.25 Aligned_cols=102 Identities=17% Similarity=0.046 Sum_probs=92.5
Q ss_pred CCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCC-EEeccCCcccccCCccccCCCCCCEE
Q 044860 173 CTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELE-LMSLPANKLQGEIPQELGNLSRLEIL 251 (279)
Q Consensus 173 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L 251 (279)
+++|+.+++++|.+.......|.++.+|+.+++.+| ++.....+|..+++|+ .+++.+ .++...+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 789999999999998888889999999999999998 7767778899999999 999998 6766677899999999999
Q ss_pred EccCcccccccchhhhcccccceee
Q 044860 252 QLSDNFLTGIISSSIFKLLLSIEFE 276 (279)
Q Consensus 252 ~l~~n~l~~~~~~~~~~l~~L~~l~ 276 (279)
++++|.++.+.+..|..+++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 9999999988888999999999876
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3.4e-17 Score=120.17 Aligned_cols=128 Identities=19% Similarity=0.157 Sum_probs=97.4
Q ss_pred CCCCcEEecccceec-ccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEE
Q 044860 149 LPFLEYISLSQNMFH-GGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELM 227 (279)
Q Consensus 149 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 227 (279)
.++++.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456777777777776 45666667777888888888777544 566777888888888888876677777778888888
Q ss_pred eccCCccccc-CCccccCCCCCCEEEccCcccccccc---hhhhcccccceeeec
Q 044860 228 SLPANKLQGE-IPQELGNLSRLEILQLSDNFLTGIIS---SSIFKLLLSIEFEIF 278 (279)
Q Consensus 228 ~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~l~ 278 (279)
++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888753 23667888888888888888887766 568888888888764
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=7.4e-17 Score=120.79 Aligned_cols=134 Identities=22% Similarity=0.182 Sum_probs=80.6
Q ss_pred CCCcEEEccCCccc-cccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEE
Q 044860 125 SSLQHLDFSFNTLS-GEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKEL 203 (279)
Q Consensus 125 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 203 (279)
++|++|++++|.+. +.+|..+ ..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 44555555555544 3344332 4455566666655555433 455566666666666666655455555566777777
Q ss_pred EccCccccccC-chhccCCCCCCEEeccCCcccccCC---ccccCCCCCCEEEccCcccccc
Q 044860 204 YLGRNGLLGEI-PREFGNLAELELMSLPANKLQGEIP---QELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 204 ~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~~n~l~~~ 261 (279)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 77777766432 2566667777777777777764433 3566777777777777766543
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=1.3e-18 Score=155.62 Aligned_cols=222 Identities=13% Similarity=0.063 Sum_probs=100.2
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCC-ccccCCCCCcEEEeecccCCC-CCCccccCCCCCcEEE
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIP-SAIFTTYTLKYVSFCRNQLSG-AFPSFIFNKSSLQHLD 131 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~ 131 (279)
+++.+.+.+... +.+|..+..+++|++|++++|.+.+... ..+..+++|++|++.+ .+.. .++.....+++|++|+
T Consensus 271 ~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 271 KLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEE
Confidence 444444444322 2344445555666666666665443222 2234555666666652 2221 1222223445566666
Q ss_pred ccC-----------CccccccChhhhcCCCCCcEEecccceecccCCccccC-CCCCcEEEcc----ccccccc-----C
Q 044860 132 FSF-----------NTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSN-CTYLQKLSLS----LNDFWGA-----I 190 (279)
Q Consensus 132 l~~-----------~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~n~~~~~-----~ 190 (279)
+++ +.+++.....+...+++|++|++..+.+++..+..+.. +++|+.|+++ .+.+.+. .
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 652 33332222222234555666665555544333333332 4555555554 2333221 2
Q ss_pred chhhcCCCCCcEEEccCcc--ccccCchhc-cCCCCCCEEeccCCcccc-cCCccccCCCCCCEEEccCcccccc-cchh
Q 044860 191 PKEIGNLTKLKELYLGRNG--LLGEIPREF-GNLAELELMSLPANKLQG-EIPQELGNLSRLEILQLSDNFLTGI-ISSS 265 (279)
Q Consensus 191 ~~~~~~~~~L~~L~l~~n~--l~~~~~~~l-~~~~~L~~L~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~ 265 (279)
+..+..+++|+.|+++.|. +++..+..+ ..+++|++|++++|.+++ .++..+..+++|+.|++++|++++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 2223445555555554332 332222222 224555666666555543 2233345555566666666655433 2333
Q ss_pred hhcccccceeee
Q 044860 266 IFKLLLSIEFEI 277 (279)
Q Consensus 266 ~~~l~~L~~l~l 277 (279)
+..+++|++|++
T Consensus 509 ~~~l~~L~~L~l 520 (592)
T 3ogk_B 509 VTKLPSLRYLWV 520 (592)
T ss_dssp HHHCSSCCEEEE
T ss_pred HHhcCccCeeEC
Confidence 345555555554
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=6.7e-20 Score=162.37 Aligned_cols=194 Identities=21% Similarity=0.199 Sum_probs=154.6
Q ss_pred CCceEEEEecCCCcccccCCccCCCCCCCEEEccCCc-------------ccccCCccccCCCCCcEEE-eecccCCCCC
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQ-------------LSGSIPSAIFTTYTLKYVS-FCRNQLSGAF 117 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~~~ 117 (279)
.++++.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+. .+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hh
Confidence 446667888888887 678889999999999997764 3445666777888888887 5544322 11
Q ss_pred Cc------cccC--CCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccccccccc
Q 044860 118 PS------FIFN--KSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGA 189 (279)
Q Consensus 118 ~~------~l~~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 189 (279)
+. .+.. ...|++|++++|.++ .+|. + ..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~-~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCC-CCcC-c-cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 10 0111 135899999999998 6776 4 88999999999999998 788899999999999999999965
Q ss_pred CchhhcCCCCCcEEEccCccccccC-chhccCCCCCCEEeccCCcccccCCc---cccCCCCCCEEEc
Q 044860 190 IPKEIGNLTKLKELYLGRNGLLGEI-PREFGNLAELELMSLPANKLQGEIPQ---ELGNLSRLEILQL 253 (279)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~L~l 253 (279)
+| .+..+++|+.|++++|.+++.. |..+..+++|++|++++|.+++.++. .+..+++|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 56 7899999999999999999776 89999999999999999999865543 2345889998864
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.2e-16 Score=120.84 Aligned_cols=132 Identities=19% Similarity=0.188 Sum_probs=109.1
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCc-cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecc
Q 044860 80 QSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPS-FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158 (279)
Q Consensus 80 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (279)
++++++++.+. .+|..+.. ++++|++++|.+.+..+. .+..+++|++|++++|.++ .+++..+.++++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence 78899998886 67765543 899999999998865554 4788999999999999998 4544444889999999999
Q ss_pred cceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCc
Q 044860 159 QNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIP 215 (279)
Q Consensus 159 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 215 (279)
+|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999987777788899999999999999988888888889999999999998875533
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=5.8e-18 Score=154.33 Aligned_cols=181 Identities=25% Similarity=0.252 Sum_probs=123.1
Q ss_pred ccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhc
Q 044860 68 TIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICS 147 (279)
Q Consensus 68 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (279)
..+..+..++.|+.|++++|.+. .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+ .
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL-G 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG-G
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh-c
Confidence 45777899999999999999998 78888889999999999999999 88999999999999999999999 888887 8
Q ss_pred CCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCC-CcEEEccCccccccCchhccCCCCCCE
Q 044860 148 NLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTK-LKELYLGRNGLLGEIPREFGNLAELEL 226 (279)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~~~~L~~ 226 (279)
++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..... ...+++++|.+++.+|. .|+.
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~ 363 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRF 363 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccce
Confidence 8999999999999997 77888999999999999999998888877654322 23467888888876665 4456
Q ss_pred EeccCC--------cccccCCccccCCCCCCEEEccCcccc
Q 044860 227 MSLPAN--------KLQGEIPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 227 L~l~~n--------~l~~~~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
|++++| .+.+..+..+..+..+....+++|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 666666 222233334455566666777777664
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=2.3e-16 Score=118.15 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=54.8
Q ss_pred CCCCEEEccCCccc-ccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEE
Q 044860 77 SSLQSLDLSFNQLS-GSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYI 155 (279)
Q Consensus 77 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 155 (279)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|.. +..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEE
Confidence 55666666666655 44555555666666666666665533 44555566666666666655323322 2445555555
Q ss_pred ecccceecccC-CccccCCCCCcEEEcccccc
Q 044860 156 SLSQNMFHGGI-PSTLSNCTYLQKLSLSLNDF 186 (279)
Q Consensus 156 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~~ 186 (279)
++++|.+.+.. +..+..+++|++|++++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcC
Confidence 55555554211 12333334444444444433
No 124
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.69 E-value=4.9e-16 Score=117.35 Aligned_cols=132 Identities=24% Similarity=0.245 Sum_probs=77.3
Q ss_pred cEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccC
Q 044860 128 QHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGR 207 (279)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 207 (279)
+.+++++++++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34455555544 444332 24555555555555544444455556666666666666544444455666666666666
Q ss_pred ccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccc
Q 044860 208 NGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIIS 263 (279)
Q Consensus 208 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 263 (279)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 66665555556666677777777777664444455666777777777777665443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=3.9e-16 Score=119.51 Aligned_cols=127 Identities=27% Similarity=0.307 Sum_probs=81.5
Q ss_pred cEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccc
Q 044860 104 KYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSL 183 (279)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 183 (279)
+.++++++.++ .+|..+ .+++++|++++|.++ .+|..+ .++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666666 455443 246777777777776 666433 6677777777777777655555666666777777777
Q ss_pred ccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccc
Q 044860 184 NDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 184 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
|.+....+..|..+++|+.|++++|.++...+..+..+++|++|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7666555556666666666666666666444445666666666666666654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.2e-16 Score=115.84 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=80.3
Q ss_pred CCCcEEEccCCccc-cccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEE
Q 044860 125 SSLQHLDFSFNTLS-GEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKEL 203 (279)
Q Consensus 125 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 203 (279)
+++++|++++|.+. +.+|..+ ..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 44555555555554 3444432 4556666666666655533 455666677777777777655566666667777777
Q ss_pred EccCcccccc-CchhccCCCCCCEEeccCCcccccCC---ccccCCCCCCEEEcc
Q 044860 204 YLGRNGLLGE-IPREFGNLAELELMSLPANKLQGEIP---QELGNLSRLEILQLS 254 (279)
Q Consensus 204 ~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~ 254 (279)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777653 23566777778888888887775544 356777778877765
No 127
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1e-17 Score=149.81 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=58.7
Q ss_pred ceEEEEecCCCc-cc-ccCCccCCCCCCCEEEccCCccccc----CCccccCCCCCcEEEeecccCCC----CCCccccC
Q 044860 54 KVAVLNVSGLNL-TG-TIPSQLGNLSSLQSLDLSFNQLSGS----IPSAIFTTYTLKYVSFCRNQLSG----AFPSFIFN 123 (279)
Q Consensus 54 ~l~~l~l~~~~~-~~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~ 123 (279)
++++|++++|.. .. .++.....+++|++|++++|.+.+. ++.....+++|++|++++|.+.+ .++..+..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 377777777652 11 1222233567777777777776544 22234456777777777776652 22333445
Q ss_pred CCCCcEEEccCCccccccChhhhcCCCCCcEEecc
Q 044860 124 KSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLS 158 (279)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (279)
+++|++|++++|.+. .++..+ .++++|++|++.
T Consensus 219 ~~~L~~L~L~~~~~~-~l~~~~-~~~~~L~~L~l~ 251 (592)
T 3ogk_B 219 CRSLVSVKVGDFEIL-ELVGFF-KAAANLEEFCGG 251 (592)
T ss_dssp CTTCCEEECSSCBGG-GGHHHH-HHCTTCCEEEEC
T ss_pred CCCCcEEeccCccHH-HHHHHH-hhhhHHHhhccc
Confidence 677777777777665 344332 455555555554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=3.1e-15 Score=114.51 Aligned_cols=127 Identities=26% Similarity=0.253 Sum_probs=103.0
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEeccc
Q 044860 80 QSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQ 159 (279)
Q Consensus 80 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 159 (279)
++++++++.+. .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.++ .++...|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 57788888877 5665443 57888999888887 67778888888999999998888 66666668888899999998
Q ss_pred ceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc
Q 044860 160 NMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL 211 (279)
Q Consensus 160 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 211 (279)
|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8888777777888888999999988887666667888888999999888775
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=5.7e-15 Score=111.44 Aligned_cols=127 Identities=22% Similarity=0.240 Sum_probs=82.2
Q ss_pred EEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCc
Q 044860 57 VLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNT 136 (279)
Q Consensus 57 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (279)
.++++++++. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 3444455555 334333 2578888888888775555556777788888888877775555556677777777777777
Q ss_pred cccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccccccc
Q 044860 137 LSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW 187 (279)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 187 (279)
++ .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 76 555555566777777777777766444444555666666666666654
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=2.2e-14 Score=121.92 Aligned_cols=214 Identities=13% Similarity=0.116 Sum_probs=136.1
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
+++.+.+.. ++......+|.++++|+.+++..|.+. .++.......+|+.+.+..+ ++.+....|..+.+|+.+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 455555554 344344455666666666666666665 23332233466666666533 444445556666677777766
Q ss_pred CCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEccccccc-----ccCchhhcCCCCCcEEEccCc
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFW-----GAIPKEIGNLTKLKELYLGRN 208 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n 208 (279)
.+ ++ .+....|.+ .+|+.+.+.. .+.......|.++++|+.+.+.++... ......|.++.+|+.+.+.+
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 53 33 556666555 5677776643 334344567778888888888776553 35566777888888888874
Q ss_pred cccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhccc-ccceeee
Q 044860 209 GLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLL-LSIEFEI 277 (279)
Q Consensus 209 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l 277 (279)
.++.....+|..+.+|+.+.+..+ ++......|.++ +|+.+++.+|.+....+..+..++ +++.+.+
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 466566677888888888888655 554556778888 888888888877766666666664 4555554
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.9e-15 Score=112.93 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=110.7
Q ss_pred cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCC
Q 044860 120 FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTK 199 (279)
Q Consensus 120 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 199 (279)
.+..+.+|++|++++|.++ .++. +....++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4556889999999999998 6654 434445999999999999854 57888999999999999997665566688899
Q ss_pred CcEEEccCccccccCch--hccCCCCCCEEeccCCcccccCCc----cccCCCCCCEEEccCcccccc
Q 044860 200 LKELYLGRNGLLGEIPR--EFGNLAELELMSLPANKLQGEIPQ----ELGNLSRLEILQLSDNFLTGI 261 (279)
Q Consensus 200 L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~l~~n~l~~~ 261 (279)
|+.|++++|.+. .++. .+..+++|++|++++|.+. ..|. .+..+++|+.|++++|...+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999996 4454 7888999999999999997 4555 478899999999999987643
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=2.5e-15 Score=113.35 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=102.8
Q ss_pred cccCCCCCcEEEeecccCCCCCCccccCCC-CCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCC
Q 044860 96 AIFTTYTLKYVSFCRNQLSGAFPSFIFNKS-SLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCT 174 (279)
Q Consensus 96 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 174 (279)
.+..+.+|+.|++++|.++. ++. +..+. +|++|++++|.++ .+ .. +..+++|++|++++|.+.+..+..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR-KL-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC-EE-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC-cc-cc-cccCCCCCEEECCCCcccccCcchhhcCC
Confidence 46678889999999998883 443 44444 8999999999888 44 33 37888999999999998855444458888
Q ss_pred CCcEEEcccccccccCch--hhcCCCCCcEEEccCccccccCch----hccCCCCCCEEeccCCccc
Q 044860 175 YLQKLSLSLNDFWGAIPK--EIGNLTKLKELYLGRNGLLGEIPR----EFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 175 ~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~l~~n~l~ 235 (279)
+|++|++++|.+ +..+. .+..+++|+.|++++|.++. .|. .+..+++|++|++++|...
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999988 44454 67788889999999999874 444 3778899999999888765
No 133
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=8.9e-17 Score=143.69 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=63.8
Q ss_pred CCceEEEEecCCCcccccCCccC-CCCCCCEEEccCC-ccccc-CCccccCCCCCcEEEeecccCCCCCCccc----cCC
Q 044860 52 SHKVAVLNVSGLNLTGTIPSQLG-NLSSLQSLDLSFN-QLSGS-IPSAIFTTYTLKYVSFCRNQLSGAFPSFI----FNK 124 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l 124 (279)
.++++.|+++++.+.+..+..+. .+++|++|++++| .+.+. ++..+..+++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 34677777777776654444443 4677777777777 34322 33334467777888877777654333322 355
Q ss_pred CCCcEEEccCCc--cccccChhhhcCCCCCcEEecccc
Q 044860 125 SSLQHLDFSFNT--LSGEIPANICSNLPFLEYISLSQN 160 (279)
Q Consensus 125 ~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~ 160 (279)
++|++|++++|. +.......+...+++|++|++.+|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 677777777765 221111222244577777777665
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=9e-14 Score=118.11 Aligned_cols=213 Identities=14% Similarity=0.105 Sum_probs=140.0
Q ss_pred ceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEcc
Q 044860 54 KVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFS 133 (279)
Q Consensus 54 ~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (279)
+++.+.+..+ +......+|.+. +|+.+.+.. .+.......|..+.+|+.+++..|.++......+ .+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE-eecccCEEEeC
Confidence 4555555544 443444555553 577777664 4443445566677777777777776663333333 35677777776
Q ss_pred CCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCcccc--
Q 044860 134 FNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLL-- 211 (279)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-- 211 (279)
.+ +. .++...|.++++|+.+.+..+ +.......|.+ .+|+.+.+. +.+.......|.++.+|+.+.+.++.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 43 54 667777777777777777664 33344445555 677777774 3455666777888888888888877654
Q ss_pred ---ccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeeec
Q 044860 212 ---GEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 212 ---~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~ 278 (279)
......|..+++|+.+.+.. .++......|.+|.+|+.+.+..+ ++.+-...|..+ +|+.+.+.
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 34556788888888888884 465556677888888888888554 666666677777 88888763
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=3.5e-17 Score=125.99 Aligned_cols=132 Identities=23% Similarity=0.308 Sum_probs=65.0
Q ss_pred cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCC
Q 044860 120 FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTK 199 (279)
Q Consensus 120 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 199 (279)
.+..+++|++|++++|.+. .+| .+ ..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ .+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~~-~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-SL-SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-CH-HHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-cc-ccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 4444444555555444444 233 22 44555555555555554 334334444555555555555533 22 3444555
Q ss_pred CcEEEccCccccccCc-hhccCCCCCCEEeccCCcccccCCc----------cccCCCCCCEEEccCcccc
Q 044860 200 LKELYLGRNGLLGEIP-REFGNLAELELMSLPANKLQGEIPQ----------ELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 200 L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~----------~l~~~~~L~~L~l~~n~l~ 259 (279)
|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ +++++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666665553221 3455556666666666655443332 245566666554 44444
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=4.1e-17 Score=125.59 Aligned_cols=131 Identities=24% Similarity=0.264 Sum_probs=110.2
Q ss_pred ccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhcc
Q 044860 140 EIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFG 219 (279)
Q Consensus 140 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 219 (279)
.+|..+ ..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++ ++ .+.
T Consensus 39 ~l~~~~-~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 39 KMDATL-STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp CCHHHH-HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred hhhHHH-hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 334455 789999999999999985 56 7889999999999999995 567777777899999999999985 34 677
Q ss_pred CCCCCCEEeccCCcccccCC-ccccCCCCCCEEEccCcccccccch----------hhhcccccceee
Q 044860 220 NLAELELMSLPANKLQGEIP-QELGNLSRLEILQLSDNFLTGIISS----------SIFKLLLSIEFE 276 (279)
Q Consensus 220 ~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~l~ 276 (279)
.+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|. .+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88999999999999984332 4688999999999999999877664 378999999886
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=1.2e-16 Score=142.76 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=28.0
Q ss_pred CCCCcEEEccCccccccCchhc-cCCCCCCEEeccCCcccccCC-ccccCCCCCCEEEccCcccc
Q 044860 197 LTKLKELYLGRNGLLGEIPREF-GNLAELELMSLPANKLQGEIP-QELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 197 ~~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~ 259 (279)
+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++... ..+..+++|+.|++++|+++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4445555555555443322222 334555555555555432221 12233455555555555443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=5e-14 Score=116.85 Aligned_cols=104 Identities=17% Similarity=0.109 Sum_probs=92.8
Q ss_pred CCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCc-EEEccCccccccCchhccCCCCCCE
Q 044860 148 NLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLK-ELYLGRNGLLGEIPREFGNLAELEL 226 (279)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~ 226 (279)
.+++|+.+++.+|.+.......|.++.+|+.+++.+| +.......|.++.+|+ .+.+.+ .++...+.+|..+++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3789999999999988777788999999999999998 7678888899999999 999998 777677789999999999
Q ss_pred EeccCCcccccCCccccCCCCCCEEEc
Q 044860 227 MSLPANKLQGEIPQELGNLSRLEILQL 253 (279)
Q Consensus 227 L~l~~n~l~~~~~~~l~~~~~L~~L~l 253 (279)
+++.+|.++...+..|.++++|+.+..
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999998777889999999998863
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.8e-13 Score=102.49 Aligned_cols=105 Identities=25% Similarity=0.231 Sum_probs=60.6
Q ss_pred CcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEcc
Q 044860 127 LQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLG 206 (279)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 206 (279)
.++++++++.++ .+|..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456666666666 555544 2556666666666665555555666666666666666554444445555556666666
Q ss_pred CccccccCchhccCCCCCCEEeccCCccc
Q 044860 207 RNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 207 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
+|.+++..+..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66655444444555555666666665554
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=1.2e-15 Score=128.54 Aligned_cols=160 Identities=21% Similarity=0.186 Sum_probs=80.3
Q ss_pred CCCCEEEccCCcccccCCcccc----C-CCCCcEEEeecccCCCCCCccc-cCCCCCcEEEccCCccccccChhh----h
Q 044860 77 SSLQSLDLSFNQLSGSIPSAIF----T-TYTLKYVSFCRNQLSGAFPSFI-FNKSSLQHLDFSFNTLSGEIPANI----C 146 (279)
Q Consensus 77 ~~L~~L~l~~n~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~----~ 146 (279)
++|+.|++++|.+.+.....+. . ..+|+.|+|++|.++......+ ..+.+|++|++++|.+++.....+ .
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566777777766543222222 1 2466777777666653222222 123456666666666653222211 1
Q ss_pred cCCCCCcEEecccceecc----cCCccccCCCCCcEEEcccccccccC----chhhcCCCCCcEEEccCcccccc----C
Q 044860 147 SNLPFLEYISLSQNMFHG----GIPSTLSNCTYLQKLSLSLNDFWGAI----PKEIGNLTKLKELYLGRNGLLGE----I 214 (279)
Q Consensus 147 ~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~----~ 214 (279)
...++|++|++++|.+.. .++..+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234556666666666542 12223344556666666666553321 23344445566666666665532 2
Q ss_pred chhccCCCCCCEEeccCCcccc
Q 044860 215 PREFGNLAELELMSLPANKLQG 236 (279)
Q Consensus 215 ~~~l~~~~~L~~L~l~~n~l~~ 236 (279)
+..+...++|++|++++|.++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 2233344556666666665543
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=4.3e-13 Score=100.73 Aligned_cols=104 Identities=23% Similarity=0.215 Sum_probs=71.5
Q ss_pred cEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccC
Q 044860 128 QHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGR 207 (279)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 207 (279)
+.++++++.+. .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777776 677655 26777777777777766666677777777777777777555555556677777777777
Q ss_pred ccccccCchhccCCCCCCEEeccCCccc
Q 044860 208 NGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 208 n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
|.+++..+..+..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7776544445666777777777777665
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=5.6e-13 Score=99.77 Aligned_cols=104 Identities=25% Similarity=0.275 Sum_probs=70.4
Q ss_pred EEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCC
Q 044860 56 AVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFN 135 (279)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (279)
+.++++++.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45777777776 3555443 67777888877777666666777777777777777777555555566777777777777
Q ss_pred ccccccChhhhcCCCCCcEEecccceec
Q 044860 136 TLSGEIPANICSNLPFLEYISLSQNMFH 163 (279)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (279)
.++ .++...+..+++|++|++++|.+.
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 776 555555566667777777666654
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=8.7e-13 Score=99.08 Aligned_cols=104 Identities=25% Similarity=0.321 Sum_probs=73.1
Q ss_pred EEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCC
Q 044860 56 AVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFN 135 (279)
Q Consensus 56 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (279)
+.++++++.+. .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56788888776 5565553 67888888888887666777777778888888877777544444566777777777777
Q ss_pred ccccccChhhhcCCCCCcEEecccceec
Q 044860 136 TLSGEIPANICSNLPFLEYISLSQNMFH 163 (279)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (279)
.+. .++...+..+++|++|++.+|.+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 776 566655566777777777776664
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=1.1e-14 Score=122.63 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=99.2
Q ss_pred CCCCcEEEeecccCCCCCCcc----ccC-CCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccc----
Q 044860 100 TYTLKYVSFCRNQLSGAFPSF----IFN-KSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTL---- 170 (279)
Q Consensus 100 l~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---- 170 (279)
++.|+.|++++|.++...... +.. ..+|++|++++|.+.+.....++..+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356777777777765322222 222 25777777777776543333343445567777777777653322222
Q ss_pred -cCCCCCcEEEccccccccc----CchhhcCCCCCcEEEccCcccccc----CchhccCCCCCCEEeccCCccccc----
Q 044860 171 -SNCTYLQKLSLSLNDFWGA----IPKEIGNLTKLKELYLGRNGLLGE----IPREFGNLAELELMSLPANKLQGE---- 237 (279)
Q Consensus 171 -~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~---- 237 (279)
...++|++|++++|.+... ++..+...++|+.|++++|.+++. ++..+...++|++|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2346677777777776432 233345566777777777776643 234455566777777777777542
Q ss_pred CCccccCCCCCCEEEccCcccccccchhhhcc
Q 044860 238 IPQELGNLSRLEILQLSDNFLTGIISSSIFKL 269 (279)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 269 (279)
+...+..+++|++|+|++|.+++.....+..+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 22334456677777777777765554444443
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=2.1e-11 Score=101.76 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=63.0
Q ss_pred EEEccCC-ccccccChhhhcCCCCCcEEeccc-ceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEcc
Q 044860 129 HLDFSFN-TLSGEIPANICSNLPFLEYISLSQ-NMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLG 206 (279)
Q Consensus 129 ~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 206 (279)
.++.+++ .++ .+|. + ..+++|++|++++ |.+.+..+..|..+++|++|++++|.+.+..+..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 565 5666 3 5666666666664 66665555566666666666666666666666666666666666666
Q ss_pred CccccccCchhccCCCCCCEEeccCCccc
Q 044860 207 RNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 207 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
+|.+++..+..+..++ |++|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666644444444443 666666666654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.9e-11 Score=100.11 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=82.0
Q ss_pred EecCC-CcccccCCccCCCCCCCEEEccC-CcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEEEccCCc
Q 044860 59 NVSGL-NLTGTIPSQLGNLSSLQSLDLSF-NQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHLDFSFNT 136 (279)
Q Consensus 59 ~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (279)
+.+++ ++. .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|.
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44444 565 4677 88888999999986 88886666788899999999999999988788888889999999999999
Q ss_pred cccccChhhhcCCCCCcEEecccceec
Q 044860 137 LSGEIPANICSNLPFLEYISLSQNMFH 163 (279)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (279)
+. .+|..++..++ |+.|++.+|.+.
T Consensus 92 l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 88 77777766665 899999888775
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.09 E-value=3.1e-09 Score=90.14 Aligned_cols=102 Identities=15% Similarity=0.057 Sum_probs=60.7
Q ss_pred cccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCC
Q 044860 169 TLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRL 248 (279)
Q Consensus 169 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 248 (279)
.+..+.+|+.+.+..+ +.......|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ ++.....+|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3455566666666543 43445556666777777777543 44444556777777777777665 444455667777777
Q ss_pred CEEEccCcccccccchhhhccccccee
Q 044860 249 EILQLSDNFLTGIISSSIFKLLLSIEF 275 (279)
Q Consensus 249 ~~L~l~~n~l~~~~~~~~~~l~~L~~l 275 (279)
+.+++..+ +. .+...+..+.+|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 77777544 22 233456666666654
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=1.1e-10 Score=97.60 Aligned_cols=182 Identities=13% Similarity=0.126 Sum_probs=98.8
Q ss_pred CCceEEEEecCCCccc-c-------cCCccCCCCCCCEEEccCCccc---------ccCCccccCCCCCcEEEeecccCC
Q 044860 52 SHKVAVLNVSGLNLTG-T-------IPSQLGNLSSLQSLDLSFNQLS---------GSIPSAIFTTYTLKYVSFCRNQLS 114 (279)
Q Consensus 52 ~~~l~~l~l~~~~~~~-~-------~~~~~~~l~~L~~L~l~~n~~~---------~~~~~~~~~l~~L~~L~l~~~~~~ 114 (279)
..+++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+|+|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467777777554431 1 1233456788999988654321 123344567788999999876311
Q ss_pred CCCCccccCCCCCcEEEccCCccccccChhhh-cCCCCCcEEeccc--ceeccc-----CCccc--cCCCCCcEEEcccc
Q 044860 115 GAFPSFIFNKSSLQHLDFSFNTLSGEIPANIC-SNLPFLEYISLSQ--NMFHGG-----IPSTL--SNCTYLQKLSLSLN 184 (279)
Q Consensus 115 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~--~~~~~~-----~~~~l--~~~~~L~~L~l~~n 184 (279)
.++. + .+++|++|.+..+.+.......+. ..+++|+.|++.. +...+. +...+ ..+++|++|++.+|
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2232 3 378888998888877643333332 2678888888742 111100 01111 23566666666666
Q ss_pred cccccCchhhc---CCCCCcEEEccCccccccC----chhccCCCCCCEEeccCCcccc
Q 044860 185 DFWGAIPKEIG---NLTKLKELYLGRNGLLGEI----PREFGNLAELELMSLPANKLQG 236 (279)
Q Consensus 185 ~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~n~l~~ 236 (279)
.+.+..+..+. .+++|+.|+++.|.+.+.. +..+..+++|+.|++++|.++.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 55432222221 3455666666666665432 2222334566666666665543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.2e-10 Score=97.26 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=121.9
Q ss_pred CCCCEEEccCCcccc-c-------CCccccCCCCCcEEEeecccCC---------CCCCccccCCCCCcEEEccCCcccc
Q 044860 77 SSLQSLDLSFNQLSG-S-------IPSAIFTTYTLKYVSFCRNQLS---------GAFPSFIFNKSSLQHLDFSFNTLSG 139 (279)
Q Consensus 77 ~~L~~L~l~~n~~~~-~-------~~~~~~~l~~L~~L~l~~~~~~---------~~~~~~l~~l~~L~~L~l~~~~~~~ 139 (279)
..++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+++|+.|.++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457788887655431 1 1233456789999999764321 123344567799999999887422
Q ss_pred ccChhhhcCCCCCcEEecccceecccCCcccc--CCCCCcEEEccc--ccccc-----cCchhh--cCCCCCcEEEccCc
Q 044860 140 EIPANICSNLPFLEYISLSQNMFHGGIPSTLS--NCTYLQKLSLSL--NDFWG-----AIPKEI--GNLTKLKELYLGRN 208 (279)
Q Consensus 140 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~--n~~~~-----~~~~~~--~~~~~L~~L~l~~n 208 (279)
.++. + .+++|+.|++..+.+.......+. .+++|+.|+++. +...+ .+...+ ..+++|+.|++.+|
T Consensus 186 ~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 3444 3 378999999988776543323333 678999999853 21111 111122 24789999999999
Q ss_pred cccccCchhcc---CCCCCCEEeccCCccccc----CCccccCCCCCCEEEccCcccccccchhhhc
Q 044860 209 GLLGEIPREFG---NLAELELMSLPANKLQGE----IPQELGNLSRLEILQLSDNFLTGIISSSIFK 268 (279)
Q Consensus 209 ~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 268 (279)
.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++......+.+
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 88754333332 468999999999998753 2333456799999999999888655444443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.03 E-value=1.8e-08 Score=85.49 Aligned_cols=104 Identities=13% Similarity=0.212 Sum_probs=59.2
Q ss_pred ccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCC
Q 044860 170 LSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLE 249 (279)
Q Consensus 170 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 249 (279)
|..+..|+.+.+..+-. ......|.++.+|+.+.+.. .++.....+|..+.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 34445555555543322 33334455555666666542 333344456667777777777654 4334456677777777
Q ss_pred EEEccCcccccccchhhhcccccceeee
Q 044860 250 ILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 250 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
.+.+..+ ++.+-..+|..|.+|+.+++
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 7777543 55555556777777777654
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=1e-08 Score=86.92 Aligned_cols=214 Identities=15% Similarity=0.109 Sum_probs=161.0
Q ss_pred CCCceEEEEecCCCcccccCCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeecccCCCCCCccccCCCCCcEE
Q 044860 51 HSHKVAVLNVSGLNLTGTIPSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCRNQLSGAFPSFIFNKSSLQHL 130 (279)
Q Consensus 51 ~~~~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (279)
.+++++.+.+..+. .......|.++.+|+.+.+..+ +.......|..+..|+.+.+..+.. .+.+......+|+.+
T Consensus 160 ~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 160 TCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNI 235 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEE
T ss_pred ccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceE
Confidence 44688999997654 3355678899999999999876 4334556778888999888776533 223344456788998
Q ss_pred EccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccc
Q 044860 131 DFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGL 210 (279)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 210 (279)
.+... ++ .+....|..+..++.+.+..+... .....+..+..++.+......+ ....|..+.+|+.+.+..+ +
T Consensus 236 ~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 236 IIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp EECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-C
T ss_pred EECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-c
Confidence 88654 33 566677788999999999776543 4556788888898888776543 3345778899999999765 5
Q ss_pred cccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeee
Q 044860 211 LGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
+.....+|..+.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ ++.+...+|..|.+|+++++
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 5566678999999999999765 55566788999999999999876 77777778999999999876
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.89 E-value=1.3e-07 Score=80.19 Aligned_cols=130 Identities=13% Similarity=0.164 Sum_probs=96.0
Q ss_pred cChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccC
Q 044860 141 IPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGN 220 (279)
Q Consensus 141 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 220 (279)
+....|.++..|+.+.+..+... .....+.++.+|+.+.+.. .+.......|.++.+|+.+.+..+ ++.....+|..
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 33455678888999888765443 4456788899999999974 455667778999999999999764 55566678999
Q ss_pred CCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccccceeee
Q 044860 221 LAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 221 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
+.+|+.+.+..+ ++......|.+|.+|+.+++.++.... ..+..+..|+.+.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 999999999765 554556789999999999999875431 45677778887765
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.79 E-value=5.3e-07 Score=75.86 Aligned_cols=105 Identities=12% Similarity=0.039 Sum_probs=58.7
Q ss_pred ccCCCCCcEEEcccccccccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCC
Q 044860 170 LSNCTYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLE 249 (279)
Q Consensus 170 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 249 (279)
+..+..|+.+.+..+ +.......|.++.+|+.+.+..+ +.......|..+.+|+.+.+.++.++......|.+|.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 334445555555433 32333444555555666655432 3323344566667777777766666545556677777777
Q ss_pred EEEccCcccccccchhhhcccccceeee
Q 044860 250 ILQLSDNFLTGIISSSIFKLLLSIEFEI 277 (279)
Q Consensus 250 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l 277 (279)
.+.+..+ ++.+-..+|..|.+|+.+.+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 7777543 55445556666677766654
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=1.5e-08 Score=80.69 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=57.3
Q ss_pred cCCCCCcEEEccCccccc--cCchhccCCCCCCEEeccCCccccc-CCccccCCCCCCEEEccCcccccccc-------h
Q 044860 195 GNLTKLKELYLGRNGLLG--EIPREFGNLAELELMSLPANKLQGE-IPQELGNLSRLEILQLSDNFLTGIIS-------S 264 (279)
Q Consensus 195 ~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~-------~ 264 (279)
.++++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|++.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 356788888888888876 3345566788888888888888753 11223333 88888888888886544 3
Q ss_pred hhhcccccceee
Q 044860 265 SIFKLLLSIEFE 276 (279)
Q Consensus 265 ~~~~l~~L~~l~ 276 (279)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467888888876
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.57 E-value=4.2e-06 Score=70.33 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=105.3
Q ss_pred cccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceecccCCccccCCCCCcEEEcccccccccCchhhcCCCC
Q 044860 120 FIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFHGGIPSTLSNCTYLQKLSLSLNDFWGAIPKEIGNLTK 199 (279)
Q Consensus 120 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 199 (279)
.+....+++.+.+..+ +. .+....|.++..|+.+.+..+ +.......+..+.+|+.+.+..+ +.......|.++.+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 3444566777666543 33 556666678888998888765 44345567788889999988654 54556667888999
Q ss_pred CcEEEccCccccccCchhccCCCCCCEEeccCCcccccCCccccCCCCCCEEEccCcccccccchhhhcccc
Q 044860 200 LKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQGEIPQELGNLSRLEILQLSDNFLTGIISSSIFKLLL 271 (279)
Q Consensus 200 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 271 (279)
|+.+.+.++.++.....+|..+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++.+-..+|..+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 999999888887667778999999999999765 55455678899999999888654 55555555665543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=9e-09 Score=77.79 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=59.3
Q ss_pred ccCCCCCcEEEccccccccc----CchhhcCCCCCcEEEccCcccccc----CchhccCCCCCCEEec--cCCccccc--
Q 044860 170 LSNCTYLQKLSLSLNDFWGA----IPKEIGNLTKLKELYLGRNGLLGE----IPREFGNLAELELMSL--PANKLQGE-- 237 (279)
Q Consensus 170 l~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l--~~n~l~~~-- 237 (279)
+...++|++|++++|.+.+. +...+...++|+.|++++|.+.+. +...+...++|++|++ ++|.+...
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 34455666666666666432 223344456788888888877653 3455666778888888 77887643
Q ss_pred --CCccccCCCCCCEEEccCcccc
Q 044860 238 --IPQELGNLSRLEILQLSDNFLT 259 (279)
Q Consensus 238 --~~~~l~~~~~L~~L~l~~n~l~ 259 (279)
+...+...+.|++|++++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344566788999999988875
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=3.9e-08 Score=74.25 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=84.7
Q ss_pred ccccCCCCCcEEEcccc-ccccc----CchhhcCCCCCcEEEccCcccccc----CchhccCCCCCCEEeccCCccccc-
Q 044860 168 STLSNCTYLQKLSLSLN-DFWGA----IPKEIGNLTKLKELYLGRNGLLGE----IPREFGNLAELELMSLPANKLQGE- 237 (279)
Q Consensus 168 ~~l~~~~~L~~L~l~~n-~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~- 237 (279)
..+...+.|++|++++| .+... +...+...++|+.|++++|.+.+. +...+...++|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556678888888888 76432 344556678999999999999754 334555668999999999999753
Q ss_pred ---CCccccCCCCCCEEEc--cCcccccc----cchhhhcccccceeeec
Q 044860 238 ---IPQELGNLSRLEILQL--SDNFLTGI----ISSSIFKLLLSIEFEIF 278 (279)
Q Consensus 238 ---~~~~l~~~~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~l~l~ 278 (279)
+...+...+.|++|++ ++|.+... +...+...++|++|+++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 3556778899999999 88999854 44566778999999875
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=6.2e-08 Score=71.80 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=60.6
Q ss_pred CCCcEEEcccccccccCchhhcCCCCCcEEEccCcc-ccccCchhccCC----CCCCEEeccCCc-ccccCCccccCCCC
Q 044860 174 TYLQKLSLSLNDFWGAIPKEIGNLTKLKELYLGRNG-LLGEIPREFGNL----AELELMSLPANK-LQGEIPQELGNLSR 247 (279)
Q Consensus 174 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~l~~~~~ 247 (279)
.+|+.|++++|.+++..-..+..+++|+.|+|++|. +++.....+..+ ++|++|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777887777766555666777888888888874 665555555553 468888888874 66544455677888
Q ss_pred CCEEEccCcc-cc
Q 044860 248 LEILQLSDNF-LT 259 (279)
Q Consensus 248 L~~L~l~~n~-l~ 259 (279)
|++|++++|+ ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 8888888884 54
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=1.4e-07 Score=69.84 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=67.2
Q ss_pred CCCcEEEccCccccccCchhccCCCCCCEEeccCCc-ccccCCccccCC----CCCCEEEccCc-ccccccchhhhcccc
Q 044860 198 TKLKELYLGRNGLLGEIPREFGNLAELELMSLPANK-LQGEIPQELGNL----SRLEILQLSDN-FLTGIISSSIFKLLL 271 (279)
Q Consensus 198 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~----~~L~~L~l~~n-~l~~~~~~~~~~l~~ 271 (279)
-.|+.|++++|.+++.....+..+++|++|+|++|. +++..-..+..+ ++|++|+|++| +++..-...+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999988777788899999999999995 665444445553 57999999999 588777777889999
Q ss_pred cceeeec
Q 044860 272 SIEFEIF 278 (279)
Q Consensus 272 L~~l~l~ 278 (279)
|++|+++
T Consensus 141 L~~L~L~ 147 (176)
T 3e4g_A 141 LKYLFLS 147 (176)
T ss_dssp CCEEEEE
T ss_pred CCEEECC
Confidence 9999875
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=5.6e-07 Score=71.54 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=85.8
Q ss_pred CCcccceeeeCCCCCceEEEEecCC---CcccccC------------------------CccCCCCCCCE--EEccCCcc
Q 044860 39 PVCNWTGVTCDVHSHKVAVLNVSGL---NLTGTIP------------------------SQLGNLSSLQS--LDLSFNQL 89 (279)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~~l~l~~~---~~~~~~~------------------------~~~~~l~~L~~--L~l~~n~~ 89 (279)
..|.|.|..|...+.++..+...+. .+.+.++ ..+...+.|+. ++++.|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 3467889999877667765555431 1111111 11333344444 55666643
Q ss_pred cccCCc----cccCCCCCcEEEeecccCCC--CCCccccCCCCCcEEEccCCccccccChhhhcCCCCCcEEecccceec
Q 044860 90 SGSIPS----AIFTTYTLKYVSFCRNQLSG--AFPSFIFNKSSLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMFH 163 (279)
Q Consensus 90 ~~~~~~----~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (279)
. .++. ....+++|+.|+|++|.+++ .++..+..+++|++|++++|.+.+.-....+..+ +|++|++.+|.++
T Consensus 156 ~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 S-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp H-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred H-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 2 2221 22467889999999998886 3445666789999999999988742111111333 8999999999887
Q ss_pred ccCC-------ccccCCCCCcEEE
Q 044860 164 GGIP-------STLSNCTYLQKLS 180 (279)
Q Consensus 164 ~~~~-------~~l~~~~~L~~L~ 180 (279)
+..| ..+..+++|+.||
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 6544 2355678888776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=4.2e-05 Score=57.65 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=66.8
Q ss_pred cCCCCCcEEecccc-eecc----cCCccccCCCCCcEEEcccccccccC----chhhcCCCCCcEEEccCcccccc----
Q 044860 147 SNLPFLEYISLSQN-MFHG----GIPSTLSNCTYLQKLSLSLNDFWGAI----PKEIGNLTKLKELYLGRNGLLGE---- 213 (279)
Q Consensus 147 ~~l~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~---- 213 (279)
.+-+.|+.|+++++ .+.. .+.+.+..-+.|+.|++++|.+.+.. ...+..-+.|+.|+|++|.+.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 45667888888764 5532 22344555677788888877775332 22333446678888888777643
Q ss_pred CchhccCCCCCCEEeccCC---cccc----cCCccccCCCCCCEEEccCccc
Q 044860 214 IPREFGNLAELELMSLPAN---KLQG----EIPQELGNLSRLEILQLSDNFL 258 (279)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~n---~l~~----~~~~~l~~~~~L~~L~l~~n~l 258 (279)
+...+..-+.|++|+|++| .+.. .+...+...+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 3344555566777777654 2322 1223455567777777776654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=0.00012 Score=55.14 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=17.9
Q ss_pred CCCCCcEEecccceeccc----CCccccCCCCCcEEEccccccc
Q 044860 148 NLPFLEYISLSQNMFHGG----IPSTLSNCTYLQKLSLSLNDFW 187 (279)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 187 (279)
.-+.|+.|++++|.+.+. +.+.+..-+.|++|+++.|.+.
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 334455555555554321 1222233345555555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.12 E-value=0.001 Score=46.65 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred EEEccccccc-ccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCCccc
Q 044860 178 KLSLSLNDFW-GAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPANKLQ 235 (279)
Q Consensus 178 ~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~ 235 (279)
.++.+++.++ ..+|..+ ..+++.|+|++|.++...+..|..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666663 1444332 235777777777776555556666777777777777653
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0029 Score=44.31 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=21.7
Q ss_pred CCcEEEccCCccccccChhhhcCCCCCcEEeccccee
Q 044860 126 SLQHLDFSFNTLSGEIPANICSNLPFLEYISLSQNMF 162 (279)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 162 (279)
++++|++++|.++ .++...|..+++|++|++.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 4566666666665 56665556666666666665554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.56 E-value=5 Score=26.14 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=24.5
Q ss_pred ccCchhhcCCCCCcEEEccCccccccCchhccCCCCCCEEeccCC
Q 044860 188 GAIPKEIGNLTKLKELYLGRNGLLGEIPREFGNLAELELMSLPAN 232 (279)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 232 (279)
......|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455666666666666543 23344455666666666666543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.11 E-value=18 Score=23.40 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=19.4
Q ss_pred CCccCCCCCCCEEEccCCcccccCCccccCCCCCcEEEeec
Q 044860 70 PSQLGNLSSLQSLDLSFNQLSGSIPSAIFTTYTLKYVSFCR 110 (279)
Q Consensus 70 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 110 (279)
..+|.++.+|+.+.|-.+ ++......|..+.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555555555555543 2213334455555555555543
Done!