Query 044862
Match_columns 173
No_of_seqs 125 out of 198
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 12:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xu2_R Tumor necrosis factor r 44.0 6.3 0.00022 26.3 0.6 20 122-141 20-39 (47)
2 2kzy_A ZNF216-A20, zfand5 prot 42.0 4 0.00014 28.4 -0.6 15 152-166 21-38 (62)
3 2h9e_C Anti-coagulant protein 38.8 3.2 0.00011 28.9 -1.6 46 116-166 13-75 (84)
4 1hx2_A BSTI; beta-sheet disulf 37.8 0.84 2.9E-05 29.4 -4.4 41 116-160 11-54 (60)
5 1bei_A SHK-DNP22, potassium ch 32.0 15 0.0005 23.2 0.8 20 123-142 14-35 (35)
6 4b7j_A Neuraminidase; hydrolas 27.7 11 0.00038 34.8 -0.4 21 150-171 269-289 (469)
7 1zlg_A Anosmin 1; insulin-like 22.6 37 0.0013 29.8 1.9 19 122-140 63-83 (680)
8 2htq_A Neuraminidase; zanamivi 21.7 19 0.00065 32.6 -0.1 16 151-167 188-203 (390)
9 4gdi_A Neuraminidase; influenz 21.2 12 0.00041 33.6 -1.4 17 151-168 191-207 (373)
10 2c7n_A Rabex-5, GEF 1, RAB gua 20.7 16 0.00054 26.3 -0.6 15 152-166 24-41 (74)
No 1
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=44.04 E-value=6.3 Score=26.29 Aligned_cols=20 Identities=30% Similarity=0.776 Sum_probs=17.2
Q ss_pred HHHHHhhcCCccHHHHHHHh
Q 044862 122 CAARCKAHSRPNIFGRACTT 141 (173)
Q Consensus 122 C~~RCs~~sr~k~CmraC~~ 141 (173)
|..||+.+.....|-.||..
T Consensus 20 C~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHHC
T ss_pred hhcccCCCCCcchHHHHHhh
Confidence 88999977778999999974
No 2
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=41.99 E-value=4 Score=28.39 Aligned_cols=15 Identities=40% Similarity=1.026 Sum_probs=12.1
Q ss_pred CCCC---CcCCCcccccC
Q 044862 152 GTYG---NREKCGKCYTG 166 (173)
Q Consensus 152 GTyG---NkeeCPpCY~d 166 (173)
|+|| +...|.+||++
T Consensus 21 GFfGnpaT~nlCSkCyr~ 38 (62)
T 2kzy_A 21 GFYGNPRTNGMCSVCYKE 38 (62)
T ss_dssp SSBCCTTTTSCCHHHHHH
T ss_pred CCcCChhhcCcCHHHHHH
Confidence 5566 67899999997
No 3
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=38.83 E-value=3.2 Score=28.93 Aligned_cols=46 Identities=28% Similarity=0.598 Sum_probs=19.7
Q ss_pred CCChH-HHHHHHhhc-------CC-ccHH-HHHHHhhcCCccccCCCCCCCc-------CCCcccccC
Q 044862 116 KDCIP-LCAARCKAH-------SR-PNIF-GRACTTCCVRCKCVPPGTYGNR-------EKCGKCYTG 166 (173)
Q Consensus 116 ~dC~~-~C~~RCs~~-------sr-~k~C-mraC~~CC~kC~CVPpGTyGNk-------eeCPpCY~d 166 (173)
.+|+. .|...|+.. .+ ...| .+.|. .-|.| +.|++.|. ++|+ |+.+
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C-~~G~vr~~~g~CV~~~~Cp-c~~~ 75 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVC-EEGFYRNKDDKCVSAEDCE-LDNM 75 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEE-CSSCEECTTCCEECHHHHG-GGGE
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCC-CCCeEEcCCCCEECHHHCC-CCcC
Confidence 47999 999999853 11 3578 56665 68999 78998874 4575 6644
No 4
>1hx2_A BSTI; beta-sheet disulfide-rich, hydrolase inhibitor; NMR {Bombina bombina} SCOP: g.22.1.2
Probab=37.83 E-value=0.84 Score=29.40 Aligned_cols=41 Identities=22% Similarity=0.741 Sum_probs=29.0
Q ss_pred CCChHHHHHHHhhcCCccHHHHHHHhhcCCccccCCC--CCCC-cCCC
Q 044862 116 KDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPG--TYGN-REKC 160 (173)
Q Consensus 116 ~dC~~~C~~RCs~~sr~k~CmraC~~CC~kC~CVPpG--TyGN-keeC 160 (173)
.+|+..|...|+.......|.+.|. .-|.| +.| ++-| ...|
T Consensus 11 ~~Cgs~C~~tC~~~~~~~~C~~~C~---~GC~C-~~Gtv~v~~~~~~C 54 (60)
T 1hx2_A 11 QTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTVLKSKDSSEC 54 (60)
T ss_dssp ESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCEESSTTCSSE
T ss_pred ccccCcCccccCCCCCCCCCCCcCC---CCCCC-CCCCeeEECCCCCE
Confidence 4788899999987665566776553 56888 889 6666 4444
No 5
>1bei_A SHK-DNP22, potassium channel toxin SHK; potassium channel inhibitor, SEA anemone, immunosuppressant neurotoxin; HET: DNP; NMR {Stichodactyla helianthus} SCOP: g.19.1.1 PDB: 1roo_A 2k9e_A* 1c2u_A*
Probab=31.95 E-value=15 Score=23.24 Aligned_cols=20 Identities=35% Similarity=0.727 Sum_probs=15.3
Q ss_pred HHHHhhc--CCccHHHHHHHhh
Q 044862 123 AARCKAH--SRPNIFGRACTTC 142 (173)
Q Consensus 123 ~~RCs~~--sr~k~CmraC~~C 142 (173)
+.||..+ -|-+.|.+-||+|
T Consensus 14 ~frcr~smkyrl~~crktcgtc 35 (35)
T 1bei_A 14 AFQCKHSMAYRLSFCRKTCGTC 35 (35)
T ss_dssp HHHHTTCC-CTTTTSHHHHTCC
T ss_pred hhhhhhhHHHHHHHHHhhccCC
Confidence 4688754 4677899999987
No 6
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=27.67 E-value=11 Score=34.76 Aligned_cols=21 Identities=19% Similarity=0.437 Sum_probs=15.9
Q ss_pred CCCCCCCcCCCcccccCCCCCC
Q 044862 150 PPGTYGNREKCGKCYTGGNKPK 171 (173)
Q Consensus 150 PpGTyGNkeeCPpCY~d~G~pK 171 (173)
-+|+.+|.|||- ||-+.++-+
T Consensus 269 l~gs~~HiEECS-CY~~~~~v~ 289 (469)
T 4b7j_A 269 MNAPNYHYEECS-CYPDSSEIT 289 (469)
T ss_dssp CCCTTCCCCSCE-EEEETTEEE
T ss_pred cCCCcccceeee-eccCCCceE
Confidence 368889999996 998844433
No 7
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=22.60 E-value=37 Score=29.84 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=8.4
Q ss_pred HHHHHhhcC--CccHHHHHHH
Q 044862 122 CAARCKAHS--RPNIFGRACT 140 (173)
Q Consensus 122 C~~RCs~~s--r~k~CmraC~ 140 (173)
|..+|...+ ..+.|..+|+
T Consensus 63 c~~~C~~~~~~~~~~c~~~c~ 83 (680)
T 1zlg_A 63 CLEPCKESGDLRKHQCQSFCE 83 (680)
T ss_pred ccCcccccccCchhhchhhhh
Confidence 445555433 1224555554
No 8
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=21.74 E-value=19 Score=32.57 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=13.5
Q ss_pred CCCCCCcCCCcccccCC
Q 044862 151 PGTYGNREKCGKCYTGG 167 (173)
Q Consensus 151 pGTyGNkeeCPpCY~d~ 167 (173)
+|+.+|.|||- ||-+.
T Consensus 188 ~gsa~HiEECS-CYp~~ 203 (390)
T 2htq_A 188 SFNGGHIEECS-CYPND 203 (390)
T ss_dssp CCTTCCCCSCC-CCEET
T ss_pred CCCcCceEeee-EecCC
Confidence 57889999996 99873
No 9
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=21.24 E-value=12 Score=33.63 Aligned_cols=17 Identities=41% Similarity=0.288 Sum_probs=13.6
Q ss_pred CCCCCCcCCCcccccCCC
Q 044862 151 PGTYGNREKCGKCYTGGN 168 (173)
Q Consensus 151 pGTyGNkeeCPpCY~d~G 168 (173)
.|+.+|.|||- ||.+.+
T Consensus 191 ~~s~~HiEECS-CYp~~~ 207 (373)
T 4gdi_A 191 NTTGINFEYST-CYTINN 207 (373)
T ss_dssp CCTTCCCEEEE-EEEETT
T ss_pred CCCCCCceeee-ecCCCC
Confidence 57888999996 997633
No 10
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=20.74 E-value=16 Score=26.30 Aligned_cols=15 Identities=40% Similarity=0.946 Sum_probs=12.0
Q ss_pred CCCC---CcCCCcccccC
Q 044862 152 GTYG---NREKCGKCYTG 166 (173)
Q Consensus 152 GTyG---NkeeCPpCY~d 166 (173)
|+|| +.+.|.+||++
T Consensus 24 GFfGnpaT~nlCSkCyrd 41 (74)
T 2c7n_A 24 GYYGNPAWQGFCSKCWRE 41 (74)
T ss_dssp SSCCCGGGTTCCHHHHHH
T ss_pred CCCCChhhcCccHHHHHH
Confidence 5566 67899999987
Done!