Query 044862
Match_columns 173
No_of_seqs 125 out of 198
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 12:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044862.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044862hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xu2r_ g.24.1.2 (R:) Tumor ne 65.4 0.81 5.9E-05 27.6 0.6 19 122-140 17-35 (36)
2 d2c7na1 g.39.1.15 (A:18-73) Ra 49.3 1.1 8E-05 29.2 -0.9 15 152-166 7-24 (56)
3 d1jv2b5 g.3.11.6 (B:563-605) I 43.2 4.5 0.00033 24.7 1.3 20 143-162 21-41 (43)
4 d2h9ec1 g.22.1.1 (C:6-83) Anti 43.2 1.2 8.9E-05 28.9 -1.5 49 116-166 8-70 (78)
5 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 21.9 1.2 8.4E-05 28.0 -4.4 36 116-155 11-46 (60)
6 d1exta1 g.24.1.1 (A:13-71) Tum 21.0 9.2 0.00067 23.6 -0.1 24 140-166 15-46 (59)
7 d1vfia1 g.84.1.1 (A:4-95) Vana 20.0 13 0.00098 24.0 0.6 29 118-146 16-49 (92)
8 d1deca_ g.3.15.2 (A:) Decorsin 19.7 12 0.00084 22.5 0.2 11 144-161 13-23 (39)
9 d2fc7a1 g.44.1.6 (A:8-76) Zinc 19.0 15 0.0011 23.2 0.6 12 155-166 39-50 (69)
10 d2aepa1 b.68.1.1 (A:83-469) In 17.3 8.2 0.0006 32.8 -1.3 19 150-169 186-204 (387)
No 1
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.42 E-value=0.81 Score=27.64 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=17.6
Q ss_pred HHHHHhhcCCccHHHHHHH
Q 044862 122 CAARCKAHSRPNIFGRACT 140 (173)
Q Consensus 122 C~~RCs~~sr~k~CmraC~ 140 (173)
|..|||..+-.-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 8899999999999999997
No 2
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.29 E-value=1.1 Score=29.23 Aligned_cols=15 Identities=40% Similarity=0.946 Sum_probs=12.5
Q ss_pred CCCC---CcCCCcccccC
Q 044862 152 GTYG---NREKCGKCYTG 166 (173)
Q Consensus 152 GTyG---NkeeCPpCY~d 166 (173)
|+|| +...|.+||+|
T Consensus 7 GFyG~~~~~g~CSkCyr~ 24 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWRE 24 (56)
T ss_dssp SSCCCGGGTTCCHHHHHH
T ss_pred CCCCCcccCCcchHHHHH
Confidence 7788 46899999997
No 3
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.24 E-value=4.5 Score=24.69 Aligned_cols=20 Identities=50% Similarity=1.350 Sum_probs=15.6
Q ss_pred cCCccccCCCCCCCc-CCCcc
Q 044862 143 CVRCKCVPPGTYGNR-EKCGK 162 (173)
Q Consensus 143 C~kC~CVPpGTyGNk-eeCPp 162 (173)
|++|.|-.+|.+|.. |+|+-
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cpt 41 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCPT 41 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCTT
T ss_pred CCEeEeCCCCccCCccccCCC
Confidence 899999878988854 56763
No 4
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=43.18 E-value=1.2 Score=28.91 Aligned_cols=49 Identities=22% Similarity=0.508 Sum_probs=21.9
Q ss_pred CCChH-HHHHHHhhcCCccHHHHHHHh------hcCCccccCCCCCCCcC-------CCcccccC
Q 044862 116 KDCIP-LCAARCKAHSRPNIFGRACTT------CCVRCKCVPPGTYGNRE-------KCGKCYTG 166 (173)
Q Consensus 116 ~dC~~-~C~~RCs~~sr~k~CmraC~~------CC~kC~CVPpGTyGNke-------eCPpCY~d 166 (173)
.+|+. .|...|+.-.....|...|+. |=+-|.| +.|++-|.+ +|+ ||.+
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~Cp-C~~~ 70 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCE-LDNM 70 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHG-GGGE
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCC-cccC
Confidence 46775 588888766665666655543 4467889 999987654 576 8765
No 5
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=21.91 E-value=1.2 Score=28.05 Aligned_cols=36 Identities=25% Similarity=0.697 Sum_probs=26.9
Q ss_pred CCChHHHHHHHhhcCCccHHHHHHHhhcCCccccCCCCCC
Q 044862 116 KDCIPLCAARCKAHSRPNIFGRACTTCCVRCKCVPPGTYG 155 (173)
Q Consensus 116 ~dC~~~C~~RCs~~sr~k~CmraC~~CC~kC~CVPpGTyG 155 (173)
.+|+.+|..-|+.-+....|.+.| =.-|.| +.|++-
T Consensus 11 ~~C~s~Cp~tC~~~~~~~~C~~~C---~eGC~C-p~G~vl 46 (60)
T d1hx2a_ 11 QTCASSCPKTCETRNKLVLCDKKC---NQRCGC-ISGTVL 46 (60)
T ss_dssp ESSCCSSCCCTTTCCCSSSCSSCC---CSEEEE-CTTCEE
T ss_pred CcccCCCccccCCCCCCCCCCCCC---CccCCC-CCCEeE
Confidence 478888988898766666676543 366899 999874
No 6
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.02 E-value=9.2 Score=23.58 Aligned_cols=24 Identities=42% Similarity=1.239 Sum_probs=15.6
Q ss_pred HhhcCCccccCCCCC------C--CcCCCcccccC
Q 044862 140 TTCCVRCKCVPPGTY------G--NREKCGKCYTG 166 (173)
Q Consensus 140 ~~CC~kC~CVPpGTy------G--NkeeCPpCY~d 166 (173)
++||.+| ++|+| + ..-+|-+|=.+
T Consensus 15 ~~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~g 46 (59)
T d1exta1 15 SICCTKC---HKGTYLYNDCPGPGQDTDCRECESG 46 (59)
T ss_dssp TCEEECB---CTTEEEEECCSSTTSCCEEEECCTT
T ss_pred CcCCCCC---CCCCeecCccCCCCCCCEeccCCCC
Confidence 4567765 88988 4 24578777544
No 7
>d1vfia1 g.84.1.1 (A:4-95) Vanadium-binding protein 2, vanabin 2 {Vanadium-rich ascidian (Ascidia sydneiensis samea) [TaxId: 79730]}
Probab=20.04 E-value=13 Score=24.01 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=16.2
Q ss_pred ChHHHHHHHh----hcCCccHHHHHHH-hhcCCc
Q 044862 118 CIPLCAARCK----AHSRPNIFGRACT-TCCVRC 146 (173)
Q Consensus 118 C~~~C~~RCs----~~sr~k~CmraC~-~CC~kC 146 (173)
|+..|...|. .+--+++|.+-|| +.|..|
T Consensus 16 c~h~C~~~C~~~C~~~~c~~~C~~~C~~~~C~~c 49 (92)
T d1vfia1 16 PLTACKEKCAESCETSADKKTCRRNCKKADCEPQ 49 (92)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCHHH
T ss_pred CCCcCcCcccccccccccccccCCCCccCcCCCc
Confidence 4444444444 4445667777777 355554
No 8
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=19.66 E-value=12 Score=22.49 Aligned_cols=11 Identities=36% Similarity=1.271 Sum_probs=7.5
Q ss_pred CCccccCCCCCCCcCCCc
Q 044862 144 VRCKCVPPGTYGNREKCG 161 (173)
Q Consensus 144 ~kC~CVPpGTyGNkeeCP 161 (173)
++|+| ||+||+
T Consensus 13 ekclc-------nkdecp 23 (39)
T d1deca_ 13 EKCLC-------NKDECP 23 (39)
T ss_dssp SCEES-------SSSEEC
T ss_pred hhccc-------cCCCCC
Confidence 45666 677776
No 9
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.98 E-value=15 Score=23.19 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=10.0
Q ss_pred CCcCCCcccccC
Q 044862 155 GNREKCGKCYTG 166 (173)
Q Consensus 155 GNkeeCPpCY~d 166 (173)
.|.|.|..||.+
T Consensus 39 ~d~DLC~~C~~~ 50 (69)
T d2fc7a1 39 MSLDFCDSCSDC 50 (69)
T ss_dssp SCCEEEGGGTTC
T ss_pred CCccchHHhhcC
Confidence 478999999987
No 10
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=17.35 E-value=8.2 Score=32.76 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=15.2
Q ss_pred CCCCCCCcCCCcccccCCCC
Q 044862 150 PPGTYGNREKCGKCYTGGNK 169 (173)
Q Consensus 150 PpGTyGNkeeCPpCY~d~G~ 169 (173)
..|..++.|||- ||.+.++
T Consensus 186 l~g~~~HiEECS-CYp~~~~ 204 (387)
T d2aepa1 186 LSGSAQHVEECS-CYPRYPG 204 (387)
T ss_dssp CCSSCCCCEEEE-EEEETTE
T ss_pred cCCCcCceEeee-ecCCCCc
Confidence 568889999996 9988443
Done!