BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044863
         (84 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
          Muramidase/transglycosylase Using Warp
          Length = 320

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 YLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIIL 80
          +  NP  QQ +DK   ++GF  +Q + IL    S  +RL  +L
Sbjct: 13 FANNPNAQQFIDKMVNKHGFDRQQLQEIL----SQAKRLDSVL 51


>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
          Transglycosylase Slt35 From Escherichia Coli
 pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From
          Escherichia Coli In Complex With N-Acetylglucosamine
 pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
          Transglycosylase Slt35
 pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
          Transglycoyslase Slt35 In Complex With Calcium
 pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
          Complex With Two Murodipeptides
          (Glcnac-Murnac-L-Ala-D-Glu)
 pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
          Complex With Bulgecin A
 pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
          Complex With Bulgecin A And (Glcnac)2
          Length = 322

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 38 YLKNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIIL 80
          +  NP  QQ +DK   ++GF  +Q + IL    S  +RL  +L
Sbjct: 15 FANNPNAQQFIDKMVNKHGFDRQQLQEIL----SQAKRLDSVL 53


>pdb|1IW8|A Chain A, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|B Chain B, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|C Chain C, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|D Chain D, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|E Chain E, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
 pdb|1IW8|F Chain F, Crystal Structure Of A Mutant Of Acid Phosphatase From
           Escherichia Blattae (g74d/i153t)
          Length = 231

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 41  NPIFQQLLDKAAEEYGFHNKQ 61
           NP FQQ L KA  E+  H K+
Sbjct: 211 NPAFQQQLQKAKAEFAQHQKK 231


>pdb|1D2T|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae
 pdb|1EOI|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae Complexed With The Transition State Analog
           Molybdate
 pdb|1EOI|B Chain B, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae Complexed With The Transition State Analog
           Molybdate
 pdb|1EOI|C Chain C, Crystal Structure Of Acid Phosphatase From Escherichia
           Blattae Complexed With The Transition State Analog
           Molybdate
          Length = 231

 Score = 25.4 bits (54), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 41  NPIFQQLLDKAAEEYGFHNKQ 61
           NP FQQ L KA  E+  H K+
Sbjct: 211 NPAFQQQLQKAKAEFAQHQKK 231


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,287,084
Number of Sequences: 62578
Number of extensions: 77724
Number of successful extensions: 188
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 183
Number of HSP's gapped (non-prelim): 5
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)