Query 044863
Match_columns 84
No_of_seqs 110 out of 618
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 12:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nz0_B Potassium voltage-gated 77.1 5.5 0.00019 26.5 5.3 63 16-82 32-95 (140)
2 1und_A Advillin, P92; actin bi 67.2 2 6.9E-05 23.2 1.0 20 37-56 1-20 (37)
3 1s1g_A Potassium voltage-gated 61.4 6.7 0.00023 25.5 2.9 62 17-82 11-73 (124)
4 3drz_A BTB/POZ domain-containi 60.5 27 0.00092 21.5 6.1 61 18-82 5-70 (107)
5 2al3_A TUG long isoform; TUG U 51.8 20 0.00068 22.6 3.9 44 19-64 9-52 (90)
6 1nn7_A Potassium channel KV4.2 50.8 3.8 0.00013 25.8 0.3 58 21-82 2-60 (105)
7 2vpk_A Myoneurin; transcriptio 50.0 31 0.0011 20.6 4.5 50 21-80 25-79 (116)
8 1r29_A B-cell lymphoma 6 prote 47.9 30 0.001 21.0 4.2 53 21-80 32-88 (127)
9 2xko_C PIPX, global nitrogen r 45.0 2.2 7.4E-05 27.4 -1.5 13 36-48 4-16 (89)
10 1yu8_X Villin; alpha helix, 3- 44.9 7.5 0.00025 23.4 1.0 20 37-56 31-50 (67)
11 2vkp_A BTB/POZ domain-containi 44.6 45 0.0016 19.4 5.0 56 21-81 11-71 (109)
12 3ga1_A Nucleus accumbens-assoc 43.3 52 0.0018 20.1 4.9 50 21-80 36-89 (129)
13 1ujs_A Actin-binding LIM prote 42.1 9.2 0.00032 24.2 1.1 20 37-56 46-65 (88)
14 1qzp_A Dematin; villin headpie 40.5 6.5 0.00022 23.6 0.2 21 36-56 31-51 (68)
15 1vd2_A Protein kinase C, IOTA 39.1 41 0.0014 20.9 3.8 36 26-66 14-49 (89)
16 2ccq_A P97, peptide N-glycanas 38.8 32 0.0011 21.5 3.3 44 39-82 46-97 (99)
17 2k6m_S Supervillin; SVHP, HP, 38.5 8.3 0.00028 23.1 0.5 21 36-56 30-50 (67)
18 3pmi_A PWWP domain-containing 35.9 11 0.00036 25.8 0.7 29 28-56 47-78 (134)
19 1y74_B MLIN-2/CASK, peripheral 35.1 11 0.00036 20.7 0.5 20 37-56 26-49 (50)
20 2cu1_A Mitogen-activated prote 34.1 77 0.0026 20.6 4.6 54 29-84 17-75 (103)
21 3qli_A Coenzyme A transferase; 32.3 27 0.00092 27.5 2.6 51 4-57 392-454 (455)
22 3n5b_B ASR0485 protein; PII, P 32.1 4.7 0.00016 26.8 -1.5 13 37-49 28-40 (112)
23 1wy3_A Villin; structural prot 30.3 18 0.00062 19.1 0.9 17 39-55 1-17 (35)
24 3b84_A Zinc finger and BTB dom 28.8 97 0.0033 18.5 4.6 50 21-80 27-79 (119)
25 1zav_U 50S ribosomal protein L 28.6 36 0.0012 17.2 1.9 13 44-56 18-30 (30)
26 3bux_B E3 ubiquitin-protein li 27.9 95 0.0032 23.8 4.9 40 14-55 274-314 (329)
27 3ohu_A Transcription regulator 27.6 71 0.0024 19.2 3.5 52 21-80 35-90 (125)
28 3htm_A Speckle-type POZ protei 26.3 1.2E+02 0.0042 18.8 4.9 55 21-81 37-94 (172)
29 3ezo_A Malonyl COA-acyl carrie 25.2 47 0.0016 24.0 2.7 39 20-58 11-49 (318)
30 1y6i_A Mg-chelatase cofactor G 24.7 5 0.00017 29.4 -2.7 31 13-45 199-229 (233)
31 3drx_A BTB/POZ domain-containi 24.0 1.1E+02 0.0038 21.6 4.4 62 17-82 10-76 (202)
32 2if5_A Zinc finger and BTB dom 23.8 1.2E+02 0.0041 17.9 4.9 54 21-80 28-84 (120)
33 3eh7_A 4-hydroxybutyrate COA-t 23.1 47 0.0016 25.7 2.5 18 39-56 416-434 (434)
34 2ppi_A Gigaxonin; BTB domain, 22.8 1.5E+02 0.005 18.5 4.5 57 21-81 50-109 (144)
35 2d5u_A N-glycanase 1; pngase, 22.6 72 0.0025 20.8 3.0 43 39-81 61-111 (124)
36 3kvt_A Potassium channel prote 22.6 20 0.00068 22.8 0.2 59 19-82 5-66 (115)
37 1dd4_C 50S ribosomal protein L 22.4 59 0.002 17.4 2.1 18 43-60 17-34 (40)
38 2q81_A MIZ-1 protein; BTB/POZ 20.3 1.4E+02 0.0048 17.8 3.9 49 21-80 30-81 (119)
39 1z3x_A Putative cytidyltransfe 20.1 2.7 9.3E-05 30.9 -4.9 30 13-44 207-236 (238)
No 1
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=77.08 E-value=5.5 Score=26.55 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=44.6
Q ss_pred CCCCeEEEEEcCCCeEEEEeccCC-CcHHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHHhc
Q 044863 16 APKGHFVVYVGTEMKRFVVPTSYL-KNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSK 82 (84)
Q Consensus 16 vpkG~~aVyVG~e~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 82 (84)
.....+.+.|| ..||.+..+-| ++|- .+|..++...-++.+.|.+-|..+...|++||..++.
T Consensus 32 ~~~~~V~LNVG--G~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~ 95 (140)
T 2nz0_B 32 RQDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 95 (140)
T ss_dssp TCCCEEEEEET--TEEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEC--CEEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhc
Confidence 35678888999 59999987655 3331 2343344444444455999999999999999998864
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=67.16 E-value=2 Score=23.15 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=17.4
Q ss_pred cCCCcHHHHHHHHhHHHhhC
Q 044863 37 SYLKNPIFQQLLDKAAEEYG 56 (84)
Q Consensus 37 ~~L~hP~F~~LL~~aeeEfG 56 (84)
.||+.-.|++++.++.+||-
T Consensus 1 ~yLsd~dF~~vFgmsr~eF~ 20 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQFA 20 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 48999999999999999983
No 3
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=61.40 E-value=6.7 Score=25.52 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=43.5
Q ss_pred CCCeEEEEEcCCCeEEEEeccCCC-cHHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHHhc
Q 044863 17 PKGHFVVYVGTEMKRFVVPTSYLK-NPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSK 82 (84)
Q Consensus 17 pkG~~aVyVG~e~~RfvVp~~~L~-hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 82 (84)
....+.+.|| ..||.+..+-|. +|- .+|..++...-++.+.|.+-|..+...|+.||..++.
T Consensus 11 ~~~~V~LNVG--G~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~ 73 (124)
T 1s1g_A 11 QDELIVLNVS--GRRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRT 73 (124)
T ss_dssp -CCEEEEEET--TEEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeC--CEEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhc
Confidence 4567888899 599999877653 331 2343344433444445999999999999999998864
No 4
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=60.53 E-value=27 Score=21.54 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCeEEEEeccCCC-cH--HHHHHHHhHHHhhC--CcCCCCcEEecccHHHHHHHHHHHhc
Q 044863 18 KGHFVVYVGTEMKRFVVPTSYLK-NP--IFQQLLDKAAEEYG--FHNKQNKIILPCDESTFQRLSIILSK 82 (84)
Q Consensus 18 kG~~aVyVG~e~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~~ 82 (84)
...+.+.|| .++|.+..+-|. +| .|..|.... .++. .+.+ |.+-|..+...|++||..++.
T Consensus 5 ~~~v~LNVG--G~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~-~~~fiDRdp~~F~~IL~~lr~ 70 (107)
T 3drz_A 5 SKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDET-GAYLIDRDPTYFGPVLNYLRH 70 (107)
T ss_dssp CCEEEEEET--TEEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTT-SCEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEC--CEEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCC-ceEEecCChHHHHHHHHHhCC
Confidence 346788899 599999987764 34 566665432 1232 2344 899999999999999998764
No 5
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=51.82 E-value=20 Score=22.60 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCeEEEEeccCCCcHHHHHHHHhHHHhhCCcCCCCcE
Q 044863 19 GHFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKI 64 (84)
Q Consensus 19 G~~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L 64 (84)
|--.+++....+|+.|.+ -..-.+.++|++|=+-||++.+...|
T Consensus 9 ~m~v~Vl~~n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 9 GSAVSVLAPNGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp -CCEEEECTTSCEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred ccEEEEEcCCCcEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeE
Confidence 334455566689999998 34446788999999999998664444
No 6
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=50.77 E-value=3.8 Score=25.79 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=38.0
Q ss_pred EEEEEcCCCeEEEEeccCC-CcHHHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHHhc
Q 044863 21 FVVYVGTEMKRFVVPTSYL-KNPIFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSK 82 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 82 (84)
+...|| ..||.+..+-| ++|- .+|..++...-++.+.|.+-|..+...|++||..++.
T Consensus 2 V~LNVG--G~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILnflR~ 60 (105)
T 1nn7_A 2 IVLNVS--GTRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRT 60 (105)
T ss_dssp EEEEET--TEEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHH
T ss_pred EEEEEC--CEEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHHHHhc
Confidence 456788 58898876654 2231 1233333333333334899999999999999998864
No 7
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=50.02 E-value=31 Score=20.60 Aligned_cols=50 Identities=18% Similarity=0.326 Sum_probs=37.3
Q ss_pred EEEEEcCCCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEec---ccHHHHHHHHHHH
Q 044863 21 FVVYVGTEMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIILP---CDESTFQRLSIIL 80 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP---C~~~~Fe~vl~~l 80 (84)
+.+.|| .++|-+.-..| ..|.|++++... . + +.+.|+ .+...|+.++..+
T Consensus 25 v~l~v~--~~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~~~ 79 (116)
T 2vpk_A 25 CTIVIG--EFQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLEFI 79 (116)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHHHH
T ss_pred EEEEEC--CEEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHHHH
Confidence 345566 46787777776 579999998754 2 3 678888 7899999998765
No 8
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=47.92 E-value=30 Score=21.04 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=39.8
Q ss_pred EEEEEcCCCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEe-c-ccHHHHHHHHHHH
Q 044863 21 FVVYVGTEMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIIL-P-CDESTFQRLSIIL 80 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~I-P-C~~~~Fe~vl~~l 80 (84)
+.+.|| .++|-+.-..| ..|.|++++...-.| .. ..|.| + .+...|+.++..+
T Consensus 32 v~l~v~--~~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~~~ 88 (127)
T 1r29_A 32 VVIVVS--REQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLDFM 88 (127)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEC--CEEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHHHH
Confidence 345566 36787777777 689999999865555 23 68999 4 7899999998866
No 9
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=45.01 E-value=2.2 Score=27.37 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=9.7
Q ss_pred ccCCCcHHHHHHH
Q 044863 36 TSYLKNPIFQQLL 48 (84)
Q Consensus 36 ~~~L~hP~F~~LL 48 (84)
-.|||||.|.-|-
T Consensus 4 E~YLNHPtFGlLy 16 (89)
T 2xko_C 4 ENYLNHPTFGLLY 16 (89)
T ss_dssp CCEEEETTTEEEE
T ss_pred cccccCCccchhh
Confidence 3599999986553
No 10
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=44.93 E-value=7.5 Score=23.38 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=18.5
Q ss_pred cCCCcHHHHHHHHhHHHhhC
Q 044863 37 SYLKNPIFQQLLDKAAEEYG 56 (84)
Q Consensus 37 ~~L~hP~F~~LL~~aeeEfG 56 (84)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999984
No 11
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=44.63 E-value=45 Score=19.42 Aligned_cols=56 Identities=18% Similarity=0.253 Sum_probs=38.4
Q ss_pred EEEEEcC--CCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEec-ccHHHHHHHHHHHh
Q 044863 21 FVVYVGT--EMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIILP-CDESTFQRLSIILS 81 (84)
Q Consensus 21 ~aVyVG~--e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 81 (84)
+.+.||+ +.++|-+.-..| ..|.|+.++...-.|- . ..|.|+ .+...|+.++..+-
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~----~-~~i~l~~~~~~~f~~~l~~iY 71 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV----K-SEIHIPDVEPAAFLILLKYMY 71 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----------C-CEEEETTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC----C-CeEEeCCCCHHHHHHHHHHHc
Confidence 3455664 358888888887 6899999997543332 2 478897 69999999988663
No 12
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=43.34 E-value=52 Score=20.06 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=37.7
Q ss_pred EEEEEcCCCeEEEEeccCCC--cHHHHHHHHhHHHhhCCcCCCCcEEec--ccHHHHHHHHHHH
Q 044863 21 FVVYVGTEMKRFVVPTSYLK--NPIFQQLLDKAAEEYGFHNKQNKIILP--CDESTFQRLSIIL 80 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 80 (84)
+.+.|| .++|-+.-..|. .|.|++++... .. ..|.|| .+...|+.++..+
T Consensus 36 v~l~v~--~~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~~i 89 (129)
T 3ga1_A 36 VSVVVK--GHAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILSFC 89 (129)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEC--CEEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHHHH
Confidence 455666 477777766664 69999999865 23 689996 8999999999865
No 13
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=42.08 E-value=9.2 Score=24.15 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=18.7
Q ss_pred cCCCcHHHHHHHHhHHHhhC
Q 044863 37 SYLKNPIFQQLLDKAAEEYG 56 (84)
Q Consensus 37 ~~L~hP~F~~LL~~aeeEfG 56 (84)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999984
No 14
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=40.51 E-value=6.5 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.7
Q ss_pred ccCCCcHHHHHHHHhHHHhhC
Q 044863 36 TSYLKNPIFQQLLDKAAEEYG 56 (84)
Q Consensus 36 ~~~L~hP~F~~LL~~aeeEfG 56 (84)
-.||+.-.|++++.++.+||-
T Consensus 31 E~yLsdedF~~vFgmsr~eF~ 51 (68)
T 1qzp_A 31 ERHLSAEDFSRVFAMSPEEFG 51 (68)
T ss_dssp GGGBCHHHHHHHSSSCHHHHH
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999983
No 15
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.09 E-value=41 Score=20.88 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=26.8
Q ss_pred cCCCeEEEEeccCCCcHHHHHHHHhHHHhhCCcCCCCcEEe
Q 044863 26 GTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNKQNKIIL 66 (84)
Q Consensus 26 G~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~I 66 (84)
.++..|+-+|. ...|++|.++-.+-|++..+ .++++
T Consensus 14 ~gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~-~~f~l 49 (89)
T 1vd2_A 14 RGDIMITHFEP----SISFEGLCNEVRDMCSFDNE-QLFTM 49 (89)
T ss_dssp SSCEEEEEECT----TCCHHHHHHHHHHHTTCCSS-CCEEE
T ss_pred CCeEEEEECCC----CCCHHHHHHHHHHHhCCCCC-CeEEE
Confidence 34688888887 46899999999999998643 34443
No 16
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=38.83 E-value=32 Score=21.51 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHhHH------HhhCCcCCCCcEEec--ccHHHHHHHHHHHhc
Q 044863 39 LKNPIFQQLLDKAA------EEYGFHNKQNKIILP--CDESTFQRLSIILSK 82 (84)
Q Consensus 39 L~hP~F~~LL~~ae------eEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~~ 82 (84)
+++|.|++-+-..+ +..||....+.+.+| ++....+.+...|..
T Consensus 46 ~~N~~f~~~v~~~~G~~e~L~a~GF~~~~~~l~lp~~~~~~~l~~~~d~l~~ 97 (99)
T 2ccq_A 46 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIAI 97 (99)
T ss_dssp TTCHHHHHHTTTSTTHHHHHHHHTCEECSSEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHhcCCccHHHHHHHccceeCCCeeecCCCCCHHHHHHHHHHHHh
Confidence 67889988665432 357998776889998 788888887776653
No 17
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=38.51 E-value=8.3 Score=23.11 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred ccCCCcHHHHHHHHhHHHhhC
Q 044863 36 TSYLKNPIFQQLLDKAAEEYG 56 (84)
Q Consensus 36 ~~~L~hP~F~~LL~~aeeEfG 56 (84)
-.||+.-.|++++.++.+||-
T Consensus 30 E~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 30 EIYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGGSCHHHHHHHTSSCHHHHT
T ss_pred HhhCCHHHHHHHHCcCHHHHH
Confidence 379999999999999999985
No 18
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=35.92 E-value=11 Score=25.76 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=25.9
Q ss_pred CCeEEEEeccCCCc---HHHHHHHHhHHHhhC
Q 044863 28 EMKRFVVPTSYLKN---PIFQQLLDKAAEEYG 56 (84)
Q Consensus 28 e~~RfvVp~~~L~h---P~F~~LL~~aeeEfG 56 (84)
+++=|-||++-|+| -.-++|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 68889999999888 467999999999998
No 19
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=35.13 E-value=11 Score=20.68 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=14.7
Q ss_pred cCCCcHHHHHHHHh----HHHhhC
Q 044863 37 SYLKNPIFQQLLDK----AAEEYG 56 (84)
Q Consensus 37 ~~L~hP~F~~LL~~----aeeEfG 56 (84)
..|+.|.||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 45788999999973 455664
No 20
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=34.11 E-value=77 Score=20.55 Aligned_cols=54 Identities=13% Similarity=0.260 Sum_probs=35.7
Q ss_pred CeEEEEeccCCCcHHHHHHHHhHHHhhCCcCC----CCcEEecc-cHHHHHHHHHHHhcCC
Q 044863 29 MKRFVVPTSYLKNPIFQQLLDKAAEEYGFHNK----QNKIILPC-DESTFQRLSIILSKQS 84 (84)
Q Consensus 29 ~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~----~G~L~IPC-~~~~Fe~vl~~l~~~~ 84 (84)
.+|++|++.- --.|.+|..++.+-||..=+ +.-|.||= .-+..++++.++++++
T Consensus 17 GEkRIi~f~R--Pv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrss 75 (103)
T 2cu1_A 17 GEKRILQFPR--PVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRSI 75 (103)
T ss_dssp TEEEEEEEES--SCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHCS
T ss_pred CeEEEEeccC--CccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccCC
Confidence 4556665432 23599999999999995311 13456662 4467888888888764
No 21
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=32.34 E-value=27 Score=27.53 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=32.5
Q ss_pred ccccccccccCCCCCCeEEEEEcC------------CCeEEEEeccCCCcHHHHHHHHhHHHhhCC
Q 044863 4 NKIVKDEAIRSRAPKGHFVVYVGT------------EMKRFVVPTSYLKNPIFQQLLDKAAEEYGF 57 (84)
Q Consensus 4 ~~~~~~~~~~~~vpkG~~aVyVG~------------e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 57 (84)
+||+..-..+...|++++-+.|=| ||-+=+| + +.||.||+.|.+++++.|+
T Consensus 392 s~Iv~~~~~~vtt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI--~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 392 SRIIPRIDGPVTTPRIDTHYIVTEFGAVNLKGLSSTERALRII--E-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp ESEESCCSSSCSBCTTTCCEEEETTEEEECTTCCHHHHHHHHH--T-TSCHHHHHHHHHHHHHTTC
T ss_pred CeEeccCCCCcccCcccccEEEeccEEEECCCCCHHHHHHHHH--H-ccCcchHHHHHHHHHHcCC
Confidence 345544333455688877766522 2223333 3 8999999999998888764
No 22
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=32.11 E-value=4.7 Score=26.76 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=9.8
Q ss_pred cCCCcHHHHHHHH
Q 044863 37 SYLKNPIFQQLLD 49 (84)
Q Consensus 37 ~~L~hP~F~~LL~ 49 (84)
.|||||.|.-|..
T Consensus 28 ~YLNHPTFGLLyr 40 (112)
T 3n5b_B 28 TYINHPTWGLLYR 40 (112)
T ss_dssp CEEEETTTEEEEE
T ss_pred hhccCCccchhee
Confidence 4999999865543
No 23
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=30.27 E-value=18 Score=19.07 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=13.6
Q ss_pred CCcHHHHHHHHhHHHhh
Q 044863 39 LKNPIFQQLLDKAAEEY 55 (84)
Q Consensus 39 L~hP~F~~LL~~aeeEf 55 (84)
|+.-.|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677888888888887
No 24
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=28.76 E-value=97 Score=18.53 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=36.4
Q ss_pred EEEEEcCCCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEec-ccHHHHHHHHHHH
Q 044863 21 FVVYVGTEMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIILP-CDESTFQRLSIIL 80 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 80 (84)
+.+.|| .++|-+.-..| ..|.|++++... . . +.|.|+ .+...|+.++..+
T Consensus 27 v~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~~-----~--~-~~i~l~~~~~~~f~~ll~~i 79 (119)
T 3b84_A 27 ATLDVG--GLVFKAHWSVLACCSHFFQSLYGDG-----S--G-GSVVLPAGFAEIFGLLLDFF 79 (119)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHTTT-----T--C-CCEEECGGGHHHHHHHHHHH
T ss_pred eEEEEC--CEEEEeeHHHHhhcCHHHHHHHCCC-----C--C-CeEEeCCCCHHHHHHHHHHH
Confidence 345566 37777776666 479999998753 1 3 679998 6788999998765
No 25
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=28.59 E-value=36 Score=17.21 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=10.6
Q ss_pred HHHHHHhHHHhhC
Q 044863 44 FQQLLDKAAEEYG 56 (84)
Q Consensus 44 F~~LL~~aeeEfG 56 (84)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899998
No 26
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=27.90 E-value=95 Score=23.85 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=29.1
Q ss_pred CCCCCCeEEE-EEcCCCeEEEEeccCCCcHHHHHHHHhHHHhh
Q 044863 14 SRAPKGHFVV-YVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEY 55 (84)
Q Consensus 14 ~~vpkG~~aV-yVG~e~~RfvVp~~~L~hP~F~~LL~~aeeEf 55 (84)
+...-|.+|+ ||-.+.+ ++.+-=.|-|++|+|++-.+|-|
T Consensus 274 ScTrlGqwAIgyV~~~~~--I~qtip~nk~l~qal~dg~~eg~ 314 (329)
T 3bux_B 274 SCTRLGQWAIGYVTADGN--ILQTIPHNKPLFQALIDGFREGF 314 (329)
T ss_dssp CSSSTTSEEEEEECTTSC--EEEECCSSCCHHHHHHHHHHHTS
T ss_pred ccCccCceEEEEECCCCc--eeeeCCCCcHHHHHHHhccccce
Confidence 3467799998 8865322 33344478999999999998865
No 27
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=27.61 E-value=71 Score=19.20 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=37.1
Q ss_pred EEEEEcCCCeEEEEeccCCC--cHHHHHHHHhHHHhhCCcCCCCcEEec--ccHHHHHHHHHHH
Q 044863 21 FVVYVGTEMKRFVVPTSYLK--NPIFQQLLDKAAEEYGFHNKQNKIILP--CDESTFQRLSIIL 80 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~Fe~vl~~l 80 (84)
+.+.|| .++|-+.-..|. .|.|++++.....| . ..|.|| .+...|+.++..+
T Consensus 35 v~l~v~--~~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~-~~i~l~~~~~~~~f~~~l~~i 90 (125)
T 3ohu_A 35 VTLIVE--RKEFRAHRAVLAACSEYFWQALVGQTKN-----D-LVVSLPEEVTARGFGPLLQFA 90 (125)
T ss_dssp EEEEET--TEEEEECHHHHHHHBHHHHHHHTTCCCS-----S-CEEECCTTCCHHHHHHHHHHH
T ss_pred eEEEEC--CEEEechHHHHHHcCHHHHHHhcCCCCC-----C-cEEEeCCCCCHHHHHHHHHhH
Confidence 345566 467777766664 68999998764332 2 578887 7999999998865
No 28
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=26.27 E-value=1.2e+02 Score=18.82 Aligned_cols=55 Identities=18% Similarity=0.448 Sum_probs=39.3
Q ss_pred EEEEEcCCCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEec-ccHHHHHHHHHHHh
Q 044863 21 FVVYVGTEMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIILP-CDESTFQRLSIILS 81 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 81 (84)
+.+.|| .++|-+.-..| ..|.|+.++...-.| ... ..|.|+ .+...|+.+|..+-
T Consensus 37 v~l~v~--~~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~~l~~~Y 94 (172)
T 3htm_A 37 CCLCVA--GQEFQAHKAILAARSPVFSAMFEHEMEE---SKK-NRVEINDVEPEVFKEMMCFIY 94 (172)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHSCCCG---GGT-TEEEECSSCHHHHHHHHHHHH
T ss_pred eEEEEC--CEEEEeeHHHHHHcCHHHHHHHccCccc---cCC-CeEEecCCCHHHHHHHHHHHh
Confidence 456676 47788887776 479999999853222 223 578998 68999999988663
No 29
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=25.18 E-value=47 Score=23.99 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=25.1
Q ss_pred eEEEEEcCCCeEEEEeccCCCcHHHHHHHHhHHHhhCCc
Q 044863 20 HFVVYVGTEMKRFVVPTSYLKNPIFQQLLDKAAEEYGFH 58 (84)
Q Consensus 20 ~~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 58 (84)
..-|+-|+.....=.-.+.+++|.|++.++++.+-+|++
T Consensus 11 ~~f~F~GQGsQ~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 11 FAFVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp EEEEECCTTCCCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred eEEEECCcchhhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 344555653222222223338999999999999998875
No 30
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=24.66 E-value=5 Score=29.40 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=19.9
Q ss_pred cCCCCCCeEEEEEcCCCeEEEEeccCCCcHHHH
Q 044863 13 RSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIFQ 45 (84)
Q Consensus 13 ~~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~ 45 (84)
.-..|+||+|..-.-...| +=.+.|+||.|.
T Consensus 199 ~l~AP~GHLP~~~~lrG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 199 DLSAPQGHLPLLNQLRGVR--VAESLYRHPVWS 229 (233)
T ss_dssp STTSCTTCCSCCCCTTCTH--HHHHHHTSTHHH
T ss_pred eCCCCCCCCCCccccchHH--HHHHHHCCcccc
Confidence 3468999999864211122 445678888874
No 31
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=24.00 E-value=1.1e+02 Score=21.56 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCCeEEEEEcCCCeEEEEeccCCC-cH--HHHHHHHhHHHhhC--CcCCCCcEEecccHHHHHHHHHHHhc
Q 044863 17 PKGHFVVYVGTEMKRFVVPTSYLK-NP--IFQQLLDKAAEEYG--FHNKQNKIILPCDESTFQRLSIILSK 82 (84)
Q Consensus 17 pkG~~aVyVG~e~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~~G~L~IPC~~~~Fe~vl~~l~~ 82 (84)
....+.+.|| ..||....+-|. +| .|..|+... .++. .+.+ |.+-|..+...|++||..++.
T Consensus 10 ~~~~V~LNVG--G~~F~Tt~sTL~r~PdS~L~~lfs~~-~~~~~~~De~-geyFIDRDP~~F~~ILnyLRt 76 (202)
T 3drx_A 10 VSKWVRLNVG--GTYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDET-GAYLIDRDPTYFGPVLNYLRH 76 (202)
T ss_dssp CCCEEEEEET--TEEEEEETTGGGSCTTSSTHHHHSCC-CC----BCTT-CCEEECSCSTTHHHHHHHHHH
T ss_pred CCCEEEEEEC--CEEEEEeHHHHhCCCcchHHHHhcCc-cccCcccCCC-ccEEecCChHHHHHHHHHhcC
Confidence 4567888999 599999987774 34 566664321 1232 2344 899999999999999998764
No 32
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=23.85 E-value=1.2e+02 Score=17.91 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=37.1
Q ss_pred EEEEEcCCCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEec-ccHHHHHHHHHHH
Q 044863 21 FVVYVGTEMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIILP-CDESTFQRLSIIL 80 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l 80 (84)
+.+.|| .++|-+.-..| ..|.|++++...-.| ... ..|.|+ .+...|+.++..+
T Consensus 28 v~l~v~--~~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~ll~~~ 84 (120)
T 2if5_A 28 VVILVE--GREFPTHRSVLAACSQYFKKLFTSGAVV---DQQ-NVYEIDFVSAEALTALMDFA 84 (120)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHHHH
T ss_pred eEEEEC--CEEEeHHHHHHHHhCHHHHHHhcCCccc---cCC-ceEEeCCCCHHHHHHHHHHH
Confidence 345566 47787777777 479999999754333 223 678998 6899999998765
No 33
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=23.10 E-value=47 Score=25.66 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=13.7
Q ss_pred CCcHHHHHHHHhH-HHhhC
Q 044863 39 LKNPIFQQLLDKA-AEEYG 56 (84)
Q Consensus 39 L~hP~F~~LL~~a-eeEfG 56 (84)
+.||.||+.|.+. ++.||
T Consensus 416 iAhpdfr~~L~~~a~~~~~ 434 (434)
T 3eh7_A 416 IAHPDFREELTKHLRKRFG 434 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcHHHHHHHHHHhhC
Confidence 9999999977654 45565
No 34
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=22.82 E-value=1.5e+02 Score=18.54 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=37.8
Q ss_pred EEEEEcCCCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEec-ccHHHHHHHHHHHh
Q 044863 21 FVVYVGTEMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIILP-CDESTFQRLSIILS 81 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~Fe~vl~~l~ 81 (84)
+.+.|| .++|-+.-..| ..|.|++++...-.|-. ... ..|.|+ .+...|+.+|..+=
T Consensus 50 v~l~v~--~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~-~~I~l~~v~~~~f~~lL~fiY 109 (144)
T 2ppi_A 50 AHLVLD--GEEIPVQKNILAAASPYIRTKLNYNPPKDD-GST-YKIELEGISVMVMREILDYIF 109 (144)
T ss_dssp EEEEET--TEEEEECHHHHHHHCHHHHHHHHHCC------CC-CEEECCSSCHHHHHHHHHHHT
T ss_pred eEEEEC--CEEEehHHHHHHHcCHHHHHHHcCCCcccc-CCC-cEEEeCCCCHHHHHHHHHHHh
Confidence 345566 47787777766 48999999975322111 122 679998 58999999998763
No 35
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=22.60 E-value=72 Score=20.77 Aligned_cols=43 Identities=21% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHhHH------HhhCCcCCCCcEEec--ccHHHHHHHHHHHh
Q 044863 39 LKNPIFQQLLDKAA------EEYGFHNKQNKIILP--CDESTFQRLSIILS 81 (84)
Q Consensus 39 L~hP~F~~LL~~ae------eEfG~~~~~G~L~IP--C~~~~Fe~vl~~l~ 81 (84)
+++|.|++-+-..+ +..||....+.|++| .+....+.+...|.
T Consensus 61 l~N~~f~~~V~~~~Ga~e~L~a~GF~~~~~~lvlp~~~~~~~l~~~~d~L~ 111 (124)
T 2d5u_A 61 IGNTAFSTRLLPVRGAVECLFEMGFEEGETHLIFPKKASVEQLQKIRDLIA 111 (124)
T ss_dssp CCCHHHHHTTSSSTTHHHHHHHHTCBCCSSEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHhcCCccHHHHHHHcccccCCCeeecCCCCCHHHHHHHHHHHH
Confidence 67899988554332 357998777889999 56677777766654
No 36
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=22.55 E-value=20 Score=22.84 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCeEEEEeccCCC-cH--HHHHHHHhHHHhhCCcCCCCcEEecccHHHHHHHHHHHhc
Q 044863 19 GHFVVYVGTEMKRFVVPTSYLK-NP--IFQQLLDKAAEEYGFHNKQNKIILPCDESTFQRLSIILSK 82 (84)
Q Consensus 19 G~~aVyVG~e~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~Fe~vl~~l~~ 82 (84)
..+.+.|| ..||....+-|. +| .+..|.. .-..++.+.|.+-|.-+...|.+||.-++.
T Consensus 5 ~~V~LNVG--G~~f~T~~~TL~~~P~s~L~~l~~---~~~~~~~~~g~~FiDRdp~~F~~ILnylR~ 66 (115)
T 3kvt_A 5 NRVIINVG--GIRHETYKATLKKIPATRLSRLTE---GMLNYDPVLNEYFFDRHPGVFAQIINYYRS 66 (115)
T ss_dssp CEEEEEET--TEEEEEEHHHHTTSCSSTTTTCCT---TSTTEETTTTEEEECSCTTTHHHHHHHHHH
T ss_pred CEEEEEEC--CEEEEecHHHHhcCCCccHHHHhc---CCCCCCCCCCcEEEecChHHHHHHHHHhcC
Confidence 46778899 599999875543 22 2222322 112344445899999999999999998764
No 37
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=22.36 E-value=59 Score=17.41 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=14.7
Q ss_pred HHHHHHHhHHHhhCCcCC
Q 044863 43 IFQQLLDKAAEEYGFHNK 60 (84)
Q Consensus 43 ~F~~LL~~aeeEfG~~~~ 60 (84)
...+|.+.-||+||.+..
T Consensus 17 E~~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 17 ELAELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHHCCCcc
Confidence 346889999999999864
No 38
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=20.30 E-value=1.4e+02 Score=17.79 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=35.8
Q ss_pred EEEEEcCCCeEEEEeccCC--CcHHHHHHHHhHHHhhCCcCCCCcEEecc-cHHHHHHHHHHH
Q 044863 21 FVVYVGTEMKRFVVPTSYL--KNPIFQQLLDKAAEEYGFHNKQNKIILPC-DESTFQRLSIIL 80 (84)
Q Consensus 21 ~aVyVG~e~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IPC-~~~~Fe~vl~~l 80 (84)
+.+.||+ ++|-+.-..| ..|.|++++.. +. ..+.++- +...|+.++..+
T Consensus 30 v~l~v~~--~~~~aHk~vLaa~S~yF~~~f~~--------~~-~~i~l~~~~~~~f~~ll~~~ 81 (119)
T 2q81_A 30 CTFVVDG--VHFKAHKAVLAACSEYFKMLFVD--------QK-DVVHLDISNAAGLGQVLEFM 81 (119)
T ss_dssp EEEEETT--EEEEECHHHHHHHCHHHHHHHHH--------CC-SGGGGGGCCHHHHHHHHHHH
T ss_pred eEEEECC--EEEehhHHHHHHcCHHHHHHHcC--------CC-CEEEeCCCCHHHHHHHHHHH
Confidence 3455663 7788877777 47999999974 22 5677874 788999988765
No 39
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=20.08 E-value=2.7 Score=30.93 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=18.5
Q ss_pred cCCCCCCeEEEEEcCCCeEEEEeccCCCcHHH
Q 044863 13 RSRAPKGHFVVYVGTEMKRFVVPTSYLKNPIF 44 (84)
Q Consensus 13 ~~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F 44 (84)
.-..|+||+|+.-. -+=.-+=.+.|+||.|
T Consensus 207 sl~AP~GHLP~~~~--lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 207 DLSAPRGHLPLTNQ--LRGVQVLNALLNHPAW 236 (238)
T ss_dssp STTSCTTCCSCCCC--TTCSHHHHHHHTCGGG
T ss_pred eCCCCCCCCCcCcc--cccHHHHHHHHcCccc
Confidence 34689999998542 1222233567788766
Done!