Query 044864
Match_columns 214
No_of_seqs 345 out of 1745
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 12:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 3.9E-43 1.3E-47 280.8 -2.3 150 10-160 3-154 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 5.1E-37 1.7E-41 238.2 10.7 128 13-144 2-129 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 2.7E-36 9.3E-41 225.4 9.2 105 10-115 1-105 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.1E-36 1.4E-40 225.5 7.5 104 13-117 1-104 (107)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 2.5E-35 8.5E-40 227.7 8.5 109 6-115 20-128 (128)
6 3osg_A MYB21; transcription-DN 100.0 5.5E-35 1.9E-39 225.4 9.3 106 7-114 5-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 9.3E-33 3.2E-37 220.6 7.1 108 7-115 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 100.0 9.6E-34 3.3E-38 218.8 -2.5 120 39-159 1-122 (128)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 6.7E-25 2.3E-29 163.5 -2.0 97 63-159 1-99 (105)
10 3osg_A MYB21; transcription-DN 99.9 1.4E-24 4.9E-29 167.0 -1.3 100 61-160 6-106 (126)
11 2dim_A Cell division cycle 5-l 99.9 8.1E-24 2.8E-28 146.9 2.2 66 8-74 4-69 (70)
12 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.4E-24 4.9E-29 162.5 -2.4 94 66-159 1-96 (107)
13 3zqc_A MYB3; transcription-DNA 99.9 4.1E-24 1.4E-28 165.4 -0.0 96 66-161 2-99 (131)
14 2dim_A Cell division cycle 5-l 99.8 6E-21 2E-25 132.4 5.4 65 61-125 4-69 (70)
15 1ign_A Protein (RAP1); RAP1,ye 99.8 1.2E-19 3.9E-24 151.5 6.5 106 8-114 3-200 (246)
16 2juh_A Telomere binding protei 99.8 1.5E-19 5.1E-24 137.4 3.4 82 8-90 12-103 (121)
17 2llk_A Cyclin-D-binding MYB-li 99.8 3E-19 1E-23 124.6 4.4 58 53-111 10-67 (73)
18 2din_A Cell division cycle 5-l 99.8 9.6E-19 3.3E-23 119.8 6.2 60 59-119 2-61 (66)
19 2d9a_A B-MYB, MYB-related prot 99.8 2.6E-19 8.9E-24 120.4 3.3 57 8-65 3-59 (60)
20 1gvd_A MYB proto-oncogene prot 99.8 2.7E-19 9.1E-24 117.0 2.9 52 11-63 1-52 (52)
21 2cu7_A KIAA1915 protein; nucle 99.7 1.4E-18 4.7E-23 121.1 6.1 66 60-126 3-68 (72)
22 1guu_A C-MYB, MYB proto-oncoge 99.7 4.4E-19 1.5E-23 115.9 2.2 52 11-63 1-52 (52)
23 2roh_A RTBP1, telomere binding 99.7 1.5E-18 5.1E-23 132.1 4.8 79 8-87 26-114 (122)
24 2d9a_A B-MYB, MYB-related prot 99.7 2.7E-18 9.1E-23 115.4 4.7 56 61-116 3-59 (60)
25 1ity_A TRF1; helix-turn-helix, 99.7 1.8E-18 6.1E-23 119.5 3.0 63 8-70 5-68 (69)
26 1guu_A C-MYB, MYB proto-oncoge 99.7 1.1E-17 3.7E-22 109.2 5.4 50 64-113 1-51 (52)
27 1ity_A TRF1; helix-turn-helix, 99.7 1.5E-17 5E-22 114.9 6.2 61 60-120 4-67 (69)
28 1gvd_A MYB proto-oncogene prot 99.7 1.5E-17 5E-22 108.7 5.6 50 64-113 1-51 (52)
29 1x41_A Transcriptional adaptor 99.7 1E-17 3.6E-22 112.6 2.7 54 9-63 4-57 (60)
30 3sjm_A Telomeric repeat-bindin 99.7 9.6E-18 3.3E-22 114.3 2.1 56 10-65 8-64 (64)
31 1x41_A Transcriptional adaptor 99.6 1.1E-16 3.7E-21 107.6 5.1 53 61-113 3-56 (60)
32 1w0t_A Telomeric repeat bindin 99.6 1.5E-16 5.1E-21 104.3 5.3 49 65-113 1-52 (53)
33 3sjm_A Telomeric repeat-bindin 99.6 2E-16 6.9E-21 107.7 5.2 52 64-115 9-63 (64)
34 2yum_A ZZZ3 protein, zinc fing 99.6 4.2E-17 1.4E-21 114.3 1.7 61 7-68 2-67 (75)
35 1w0t_A Telomeric repeat bindin 99.6 5.2E-17 1.8E-21 106.5 2.0 50 12-61 1-51 (53)
36 2yum_A ZZZ3 protein, zinc fing 99.6 2.4E-16 8.2E-21 110.4 5.2 59 61-119 3-67 (75)
37 2din_A Cell division cycle 5-l 99.6 2.7E-17 9.4E-22 112.5 0.2 59 7-68 3-61 (66)
38 2elk_A SPCC24B10.08C protein; 99.6 1.1E-16 3.6E-21 107.0 2.3 51 10-60 6-56 (58)
39 1ign_A Protein (RAP1); RAP1,ye 99.6 1E-15 3.4E-20 127.8 7.4 89 62-158 4-98 (246)
40 2elk_A SPCC24B10.08C protein; 99.6 1E-15 3.5E-20 102.2 5.3 50 62-111 5-56 (58)
41 2cu7_A KIAA1915 protein; nucle 99.6 3.2E-16 1.1E-20 109.0 1.2 58 7-66 3-60 (72)
42 2ltp_A Nuclear receptor corepr 99.3 2.9E-16 1E-20 113.6 0.0 56 59-114 9-64 (89)
43 2juh_A Telomere binding protei 99.5 3.3E-16 1.1E-20 119.0 -0.6 81 60-140 11-103 (121)
44 2ckx_A NGTRF1, telomere bindin 99.5 5E-15 1.7E-19 105.7 4.3 69 14-83 1-79 (83)
45 2aje_A Telomere repeat-binding 99.5 5.5E-15 1.9E-19 109.7 4.6 77 8-85 8-94 (105)
46 2yus_A SWI/SNF-related matrix- 99.5 8.3E-15 2.9E-19 103.6 2.9 52 6-59 11-62 (79)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.5 4.5E-14 1.5E-18 98.3 5.8 51 62-112 14-68 (73)
48 2llk_A Cyclin-D-binding MYB-li 99.5 1.2E-14 4.1E-19 101.2 2.7 56 6-65 16-71 (73)
49 2roh_A RTBP1, telomere binding 99.5 8.6E-15 3E-19 111.3 1.0 71 62-132 27-108 (122)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.9E-14 1E-18 99.3 2.1 56 5-61 10-68 (73)
51 2yus_A SWI/SNF-related matrix- 99.4 6.9E-14 2.4E-18 98.9 3.8 48 63-110 15-62 (79)
52 2ltp_A Nuclear receptor corepr 99.1 1.6E-14 5.3E-19 104.5 0.0 53 8-62 11-63 (89)
53 2ckx_A NGTRF1, telomere bindin 99.4 3.9E-13 1.3E-17 95.8 5.6 48 67-114 1-53 (83)
54 2aje_A Telomere repeat-binding 99.4 6.4E-13 2.2E-17 98.6 6.7 62 62-123 9-80 (105)
55 1x58_A Hypothetical protein 49 99.3 1.8E-12 6.2E-17 86.7 6.0 49 65-113 7-58 (62)
56 2cjj_A Radialis; plant develop 99.3 5.1E-12 1.7E-16 91.8 5.4 50 65-114 7-60 (93)
57 3hm5_A DNA methyltransferase 1 99.1 5.8E-11 2E-15 86.0 6.2 67 49-119 17-88 (93)
58 2cjj_A Radialis; plant develop 99.1 7.8E-12 2.7E-16 90.9 1.1 47 13-60 8-57 (93)
59 2eqr_A N-COR1, N-COR, nuclear 99.1 1.4E-10 4.7E-15 77.9 5.2 48 65-112 11-58 (61)
60 1x58_A Hypothetical protein 49 99.0 1.7E-10 5.8E-15 77.2 2.1 49 11-61 6-57 (62)
61 2eqr_A N-COR1, N-COR, nuclear 98.9 2.6E-10 9E-15 76.5 2.4 52 6-59 5-56 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.1E-09 3.7E-14 75.9 4.8 50 63-113 5-58 (72)
63 2iw5_B Protein corest, REST co 98.8 4.9E-09 1.7E-13 86.8 4.4 49 65-113 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.7E-09 9.3E-14 73.8 1.2 51 10-62 5-58 (72)
65 1fex_A TRF2-interacting telome 98.7 5E-09 1.7E-13 69.8 1.5 48 13-61 2-58 (59)
66 1wgx_A KIAA1903 protein; MYB D 98.6 3.3E-08 1.1E-12 68.4 5.1 47 66-112 8-58 (73)
67 2xag_B REST corepressor 1; ami 98.6 1.8E-08 6E-13 92.2 4.3 47 67-113 381-427 (482)
68 1wgx_A KIAA1903 protein; MYB D 98.6 1E-08 3.5E-13 70.9 1.6 49 13-62 8-59 (73)
69 1fex_A TRF2-interacting telome 98.6 5.7E-08 1.9E-12 64.6 4.8 47 66-112 2-58 (59)
70 2iw5_B Protein corest, REST co 98.5 3.7E-08 1.3E-12 81.6 2.6 52 8-61 128-179 (235)
71 1ofc_X ISWI protein; nuclear p 98.3 1E-06 3.5E-11 76.4 6.5 100 14-115 111-277 (304)
72 2yqk_A Arginine-glutamic acid 98.2 2.2E-06 7.5E-11 57.5 6.1 48 62-109 5-53 (63)
73 4eef_G F-HB80.4, designed hema 98.2 4.7E-07 1.6E-11 62.3 1.7 43 66-108 20-66 (74)
74 4eef_G F-HB80.4, designed hema 98.2 2.9E-07 1E-11 63.3 0.7 44 13-57 20-66 (74)
75 4iej_A DNA methyltransferase 1 98.2 4.2E-06 1.4E-10 60.2 6.3 61 55-119 23-88 (93)
76 1ug2_A 2610100B20RIK gene prod 98.1 5.7E-06 2E-10 58.9 5.7 48 67-114 34-84 (95)
77 2lr8_A CAsp8-associated protei 97.3 6.1E-07 2.1E-11 60.6 0.0 45 68-113 16-63 (70)
78 2yqk_A Arginine-glutamic acid 97.9 5.4E-06 1.8E-10 55.6 2.5 49 8-58 4-53 (63)
79 4a69_C Nuclear receptor corepr 97.8 2.3E-05 7.8E-10 56.7 5.1 45 66-110 43-87 (94)
80 2crg_A Metastasis associated p 97.8 3.1E-05 1.1E-09 52.9 5.1 44 66-109 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.7 9.9E-06 3.4E-10 74.1 2.5 48 10-59 377-424 (482)
82 3hm5_A DNA methyltransferase 1 97.6 1.4E-05 4.9E-10 57.6 1.7 50 11-61 28-81 (93)
83 4a69_C Nuclear receptor corepr 97.5 3.6E-05 1.2E-09 55.6 1.7 44 13-58 43-86 (94)
84 2crg_A Metastasis associated p 97.4 5.6E-05 1.9E-09 51.7 1.8 45 12-58 7-52 (70)
85 2ebi_A DNA binding protein GT- 97.4 0.00014 5E-09 51.2 3.9 49 66-114 4-66 (86)
86 2ebi_A DNA binding protein GT- 97.2 4.5E-05 1.5E-09 53.9 -0.5 49 12-60 3-63 (86)
87 2lr8_A CAsp8-associated protei 96.2 6.1E-05 2.1E-09 50.8 0.0 46 14-61 15-62 (70)
88 2y9y_A Imitation switch protei 97.1 0.00072 2.5E-08 59.9 5.9 100 14-114 124-292 (374)
89 1ug2_A 2610100B20RIK gene prod 97.0 0.00022 7.4E-09 50.8 1.7 45 14-59 34-80 (95)
90 4b4c_A Chromodomain-helicase-D 96.9 0.00058 2E-08 55.6 3.5 45 68-112 136-195 (211)
91 4b4c_A Chromodomain-helicase-D 96.5 0.002 6.9E-08 52.4 4.3 40 2-41 123-162 (211)
92 4iej_A DNA methyltransferase 1 95.4 0.0058 2E-07 43.8 1.8 49 11-60 28-80 (93)
93 2xb0_X Chromo domain-containin 94.9 0.022 7.5E-07 48.5 4.3 29 13-41 168-196 (270)
94 1ofc_X ISWI protein; nuclear p 94.5 0.066 2.2E-06 46.2 6.2 46 66-111 110-156 (304)
95 1irz_A ARR10-B; helix-turn-hel 94.1 0.1 3.4E-06 34.7 5.2 47 65-111 6-57 (64)
96 2xb0_X Chromo domain-containin 90.5 0.17 5.7E-06 43.0 3.3 26 68-93 170-196 (270)
97 1irz_A ARR10-B; helix-turn-hel 88.7 0.23 7.9E-06 33.0 2.2 49 11-59 5-56 (64)
98 3cz6_A DNA-binding protein RAP 69.5 4.1 0.00014 31.8 3.6 29 9-40 110-146 (168)
99 2y9y_A Imitation switch protei 66.9 10 0.00035 33.4 6.0 42 66-107 123-166 (374)
100 2li6_A SWI/SNF chromatin-remod 64.8 4 0.00014 29.7 2.6 39 76-114 53-99 (116)
101 2rq5_A Protein jumonji; develo 64.8 2.1 7.3E-05 31.7 1.1 45 35-82 65-113 (121)
102 2lm1_A Lysine-specific demethy 63.5 9.4 0.00032 27.1 4.4 39 76-114 48-98 (107)
103 2jrz_A Histone demethylase jar 63.1 8.2 0.00028 28.1 4.0 39 76-114 44-94 (117)
104 2o8x_A Probable RNA polymerase 61.9 9.3 0.00032 24.0 3.8 42 72-114 18-59 (70)
105 1kkx_A Transcription regulator 59.6 6.1 0.00021 29.2 2.8 40 77-116 53-100 (123)
106 1ku3_A Sigma factor SIGA; heli 58.7 11 0.00038 24.3 3.8 41 73-114 14-58 (73)
107 2cxy_A BAF250B subunit, HBAF25 57.8 12 0.00041 27.5 4.2 41 76-116 55-107 (125)
108 2jvw_A Uncharacterized protein 57.8 3.6 0.00012 28.6 1.1 45 21-78 18-69 (88)
109 2eqy_A RBP2 like, jumonji, at 57.5 12 0.00041 27.4 4.1 39 76-114 46-96 (122)
110 2li6_A SWI/SNF chromatin-remod 56.0 2.5 8.4E-05 30.9 0.1 39 23-62 53-98 (116)
111 1c20_A DEAD ringer protein; DN 55.2 15 0.0005 27.1 4.3 41 75-115 55-108 (128)
112 2rq5_A Protein jumonji; develo 54.6 12 0.00042 27.5 3.7 84 13-125 7-105 (121)
113 2kk0_A AT-rich interactive dom 54.2 13 0.00044 28.2 3.9 40 76-115 68-120 (145)
114 2p7v_B Sigma-70, RNA polymeras 51.4 13 0.00044 23.6 3.1 41 73-114 9-53 (68)
115 2jxj_A Histone demethylase jar 46.6 8.6 0.00029 26.8 1.7 38 77-114 41-90 (96)
116 3hug_A RNA polymerase sigma fa 44.9 23 0.0008 23.8 3.8 40 73-113 41-80 (92)
117 3cz6_A DNA-binding protein RAP 41.3 21 0.00072 27.8 3.2 17 62-78 110-126 (168)
118 1ig6_A MRF-2, modulator recogn 40.7 15 0.00051 26.1 2.3 40 76-115 37-89 (107)
119 3i4p_A Transcriptional regulat 39.3 21 0.0007 26.9 3.0 45 72-117 3-48 (162)
120 1x3u_A Transcriptional regulat 38.8 46 0.0016 21.2 4.4 42 69-113 17-58 (79)
121 2q1z_A RPOE, ECF SIGE; ECF sig 36.4 34 0.0012 25.4 3.9 31 83-114 149-179 (184)
122 1tty_A Sigma-A, RNA polymerase 35.0 42 0.0014 22.3 3.8 41 73-114 22-66 (87)
123 1or7_A Sigma-24, RNA polymeras 33.3 53 0.0018 24.4 4.6 31 83-114 154-184 (194)
124 3ulq_B Transcriptional regulat 33.1 60 0.0021 21.9 4.4 46 66-114 27-72 (90)
125 1fse_A GERE; helix-turn-helix 32.2 51 0.0017 20.5 3.7 44 68-114 11-54 (74)
126 3c57_A Two component transcrip 32.0 55 0.0019 22.2 4.0 44 68-114 27-70 (95)
127 2jpc_A SSRB; DNA binding prote 31.4 72 0.0025 19.1 4.2 39 74-114 3-41 (61)
128 3e7l_A Transcriptional regulat 31.1 52 0.0018 20.5 3.5 32 71-103 18-49 (63)
129 1je8_A Nitrate/nitrite respons 30.7 59 0.002 21.3 3.9 43 68-113 21-63 (82)
130 2yqf_A Ankyrin-1; death domain 29.9 58 0.002 23.0 4.0 34 70-104 14-47 (111)
131 1xsv_A Hypothetical UPF0122 pr 29.8 71 0.0024 22.5 4.5 40 73-113 29-68 (113)
132 1y29_A Huwentoxin-X; A double- 29.2 17 0.00059 19.6 0.7 8 1-8 14-21 (28)
133 1ntc_A Protein (nitrogen regul 28.6 76 0.0026 21.4 4.3 35 71-106 50-84 (91)
134 3i4p_A Transcriptional regulat 28.4 12 0.0004 28.4 -0.1 43 19-63 3-45 (162)
135 2of5_A Death domain-containing 27.4 56 0.0019 23.5 3.5 27 76-103 26-52 (114)
136 2dbb_A Putative HTH-type trans 26.7 87 0.003 22.7 4.6 44 72-116 9-53 (151)
137 2of5_H Leucine-rich repeat and 26.3 52 0.0018 23.6 3.2 30 74-104 13-42 (118)
138 2e1c_A Putative HTH-type trans 26.1 59 0.002 24.7 3.7 44 72-116 27-71 (171)
139 2o71_A Death domain-containing 25.8 59 0.002 23.4 3.4 27 76-103 26-52 (115)
140 1rp3_A RNA polymerase sigma fa 25.4 82 0.0028 24.1 4.5 36 77-113 195-230 (239)
141 2rnj_A Response regulator prot 24.9 63 0.0022 21.5 3.3 43 68-113 29-71 (91)
142 1wxp_A THO complex subunit 1; 23.1 97 0.0033 21.8 4.1 31 74-105 18-48 (110)
143 3mzy_A RNA polymerase sigma-H 23.1 76 0.0026 22.6 3.7 30 83-113 122-151 (164)
144 2cyy_A Putative HTH-type trans 22.8 83 0.0028 22.9 3.8 44 73-117 8-52 (151)
145 1tc3_C Protein (TC3 transposas 21.3 1.1E+02 0.0038 16.7 4.2 37 68-106 5-41 (51)
146 3eyi_A Z-DNA-binding protein 1 20.4 51 0.0017 22.0 1.8 38 15-53 6-43 (72)
147 2p1m_A SKP1-like protein 1A; F 20.3 33 0.0011 26.0 1.0 36 36-79 118-153 (160)
148 1p4w_A RCSB; solution structur 20.2 1.5E+02 0.0051 20.3 4.5 46 66-114 32-77 (99)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=3.9e-43 Score=280.82 Aligned_cols=150 Identities=25% Similarity=0.513 Sum_probs=104.8
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC-ch
Q 044864 10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN-RW 88 (214)
Q Consensus 10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~-~W 88 (214)
++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 57899999999999999999999889999999998 99999999999999999999999999999999999999995 79
Q ss_pred hhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCccccccccCCCCCCCCCCCCCcc
Q 044864 89 SLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATSLGQQLVDMNEPAVKPRGDDI 160 (214)
Q Consensus 89 ~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~~~~~~~~~~~~~vkn~~~~~ 160 (214)
..||..|||||++||++||.++|.+.+++++||++||.++..++. +|+.|+.|+..++||+++.|+||+...
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888776 899999999999999999999986443
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=5.1e-37 Score=238.21 Aligned_cols=128 Identities=28% Similarity=0.558 Sum_probs=108.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhc
Q 044864 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIA 92 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia 92 (214)
||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 79999999999999999999889999999998 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCCCCCCccccccc
Q 044864 93 GRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNSTGATSLGQQ 144 (214)
Q Consensus 93 ~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~s~~~~~ 144 (214)
..|||||++||++||+++|++.+....++.+--.+ .......|+.+++.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p---~~~kk~~~~~i~k~ 129 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP---DRSKKRKAADVPKK 129 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC---CCC-----------
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc---hhhhhhhhhhcchh
Confidence 99999999999999999999999888776544322 22235556666554
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2.7e-36 Score=225.44 Aligned_cols=105 Identities=46% Similarity=0.880 Sum_probs=99.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchh
Q 044864 10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWS 89 (214)
Q Consensus 10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~ 89 (214)
++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||.+|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999888999999998 99999999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHhhhhh
Q 044864 90 LIAGRLPGRTANEVKNYWNSHLRRKL 115 (214)
Q Consensus 90 ~Ia~~lpgRt~~q~r~rw~~~l~~~~ 115 (214)
.||..|||||++||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998763
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=4.1e-36 Score=225.47 Aligned_cols=104 Identities=29% Similarity=0.534 Sum_probs=100.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhc
Q 044864 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIA 92 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia 92 (214)
||+||+|||++|+++|..||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhhhhhhh
Q 044864 93 GRLPGRTANEVKNYWNSHLRRKLIN 117 (214)
Q Consensus 93 ~~lpgRt~~q~r~rw~~~l~~~~~~ 117 (214)
..|||||++||++||+.++++..++
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887554
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=2.5e-35 Score=227.72 Aligned_cols=109 Identities=46% Similarity=0.858 Sum_probs=102.6
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhC
Q 044864 6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLG 85 (214)
Q Consensus 6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G 85 (214)
.-+|++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 346889999999999999999999999888999999998 9999999999999999999999999999999999999999
Q ss_pred CchhhhcccCCCCCHHHHHHHHHHHhhhhh
Q 044864 86 NRWSLIAGRLPGRTANEVKNYWNSHLRRKL 115 (214)
Q Consensus 86 ~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~ 115 (214)
++|+.||..|||||+++|++||+.++++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999988753
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=5.5e-35 Score=225.36 Aligned_cols=106 Identities=28% Similarity=0.610 Sum_probs=101.4
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC
Q 044864 7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN 86 (214)
Q Consensus 7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~ 86 (214)
.++..++|+||+|||++|+++|.+||. +|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999997 7999999998 99999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 87 RWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 87 ~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
+|+.||..|||||+++|++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=9.3e-33 Score=220.57 Aligned_cols=108 Identities=44% Similarity=0.845 Sum_probs=102.7
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC
Q 044864 7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN 86 (214)
Q Consensus 7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~ 86 (214)
-.|++++|+||+|||++|+++|..||.++|..||+.|+ +|++.||+.||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 35889999999999999999999999878999999998 99999999999999999999999999999999999999999
Q ss_pred chhhhcccCCCCCHHHHHHHHHHHhhhhh
Q 044864 87 RWSLIAGRLPGRTANEVKNYWNSHLRRKL 115 (214)
Q Consensus 87 ~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~ 115 (214)
+|+.||+.|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999988753
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=9.6e-34 Score=218.81 Aligned_cols=120 Identities=23% Similarity=0.439 Sum_probs=94.4
Q ss_pred ccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhhhhh
Q 044864 39 IPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRRKLIN 117 (214)
Q Consensus 39 Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~ 117 (214)
||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|..||. +|..||..|||||+.||++||.++|.|.+++
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 788998 99999999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred CCCCccccccccCCCC-CCCCccccccccCCCCCCCCCCCCCc
Q 044864 118 MGIDPKNHRLHHSLPH-NSTGATSLGQQLVDMNEPAVKPRGDD 159 (214)
Q Consensus 118 ~~~~~~e~~~~~~~~~-~~~~~s~~~~~~~~~~~~~vkn~~~~ 159 (214)
++||++||..+..++. +|+.|+.|+..++||+++.|+||+..
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~ 122 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNS 122 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHH
Confidence 9999999998888876 89999999999999999999998644
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.88 E-value=6.7e-25 Score=163.53 Aligned_cols=97 Identities=23% Similarity=0.433 Sum_probs=90.9
Q ss_pred CCcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCccc
Q 044864 63 DLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATS 140 (214)
Q Consensus 63 ~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~ 140 (214)
++++++||+|||++|+++|..||. +|..||..|||||+.||++||.++|.|.+++++||++||..+..++. +|+.|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 367999999999999999999995 79999999999999999999999999999999999999998888766 8999999
Q ss_pred cccccCCCCCCCCCCCCCc
Q 044864 141 LGQQLVDMNEPAVKPRGDD 159 (214)
Q Consensus 141 ~~~~~~~~~~~~vkn~~~~ 159 (214)
|+..++||+++.|++|+..
T Consensus 81 Ia~~l~gRt~~~~k~rw~~ 99 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNS 99 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHH
Confidence 9999999999999998643
No 10
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.88 E-value=1.4e-24 Score=167.02 Aligned_cols=100 Identities=17% Similarity=0.302 Sum_probs=93.4
Q ss_pred cCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCcc
Q 044864 61 RPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGAT 139 (214)
Q Consensus 61 ~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s 139 (214)
.+..++++||+|||++|+++|..||.+|..||..|+|||+.||+.||.++|.+.+++++||++||..+..++. +|+.|+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998888776 899999
Q ss_pred ccccccCCCCCCCCCCCCCcc
Q 044864 140 SLGQQLVDMNEPAVKPRGDDI 160 (214)
Q Consensus 140 ~~~~~~~~~~~~~vkn~~~~~ 160 (214)
.|+..++||+++.|++|+...
T Consensus 86 ~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 86 IIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHH
Confidence 999999999999999997543
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=8.1e-24 Score=146.90 Aligned_cols=66 Identities=24% Similarity=0.586 Sum_probs=63.7
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHH
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEE 74 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED 74 (214)
.+.+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4788999999999999999999999888999999999 99999999999999999999999999997
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.87 E-value=1.4e-24 Score=162.50 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=88.7
Q ss_pred CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCcccccc
Q 044864 66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATSLGQ 143 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~~~~ 143 (214)
+++||+|||++|+++|..|| .+|..||..|||||+.||+.||.++|.|.+++++||++||..+..++. +|+.|+.|+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 57999999999999999999 489999999999999999999999999999999999999998888776 8999999999
Q ss_pred ccCCCCCCCCCCCCCc
Q 044864 144 QLVDMNEPAVKPRGDD 159 (214)
Q Consensus 144 ~~~~~~~~~vkn~~~~ 159 (214)
.++||+++.|++|+..
T Consensus 81 ~l~gRt~~~~k~rw~~ 96 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMM 96 (107)
T ss_dssp HHSSSCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHH
Confidence 9999999999998643
No 13
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.87 E-value=4.1e-24 Score=165.43 Aligned_cols=96 Identities=21% Similarity=0.362 Sum_probs=90.3
Q ss_pred CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCC-CCCCcccccc
Q 044864 66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPH-NSTGATSLGQ 143 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~-~~~~~s~~~~ 143 (214)
+|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.++++.||++||..+..++. +|+.|+.|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 68999999999999999999 789999999999999999999999999999999999999998888776 8999999999
Q ss_pred ccCCCCCCCCCCCCCccc
Q 044864 144 QLVDMNEPAVKPRGDDIY 161 (214)
Q Consensus 144 ~~~~~~~~~vkn~~~~~~ 161 (214)
.++||+++.|++|+....
T Consensus 82 ~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp TSTTCCHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHH
Confidence 999999999999975433
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6e-21 Score=132.36 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=62.8
Q ss_pred cCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCcccc
Q 044864 61 RPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNH 125 (214)
Q Consensus 61 ~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~ 125 (214)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||++||++||+++|+|.+++++||++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999999999997
No 15
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=1.2e-19 Score=151.55 Aligned_cols=106 Identities=21% Similarity=0.313 Sum_probs=92.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCc-----cccccccccccccccccccchhhcccCCCc-----------------
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGC-----WRTIPQAAGLARCGKSCRLRWINYLRPDLK----------------- 65 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~-----W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~----------------- 65 (214)
...+++++||+|||++|+++|++||..+ |..||+.|+ |||+.||+.||.++|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998653 999999999 99999999999999999886
Q ss_pred ------------CCCCChHHHHHHHHHHHh-h--------------------------------C---------------
Q 044864 66 ------------RGNFAEDEEDLIIKLHAL-L--------------------------------G--------------- 85 (214)
Q Consensus 66 ------------~~~Wt~eED~~L~~lv~~-~--------------------------------G--------------- 85 (214)
+..||.+||-.|+..+.+ | |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1 1
Q ss_pred ----------CchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 86 ----------NRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 86 ----------~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
..|..||+.+|+||.+++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 16999999999999999999999888765
No 16
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.76 E-value=1.5e-19 Score=137.41 Aligned_cols=82 Identities=22% Similarity=0.397 Sum_probs=77.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccc----cccccccccccchhhccc-----CCCcCC-CCChHHHHHH
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAA----GLARCGKSCRLRWINYLR-----PDLKRG-NFAEDEEDLI 77 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~l~-----p~~~~~-~Wt~eED~~L 77 (214)
++..++++||+|||+.|+++|++||.++|..|++.+ + +||+.+|++||.++|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 467889999999999999999999998999999975 5 9999999999999998 999999 9999999999
Q ss_pred HHHHHhhCCchhh
Q 044864 78 IKLHALLGNRWSL 90 (214)
Q Consensus 78 ~~lv~~~G~~W~~ 90 (214)
+.++..+|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 17
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.76 E-value=3e-19 Score=124.61 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=47.1
Q ss_pred ccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHh
Q 044864 53 RLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHL 111 (214)
Q Consensus 53 r~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l 111 (214)
--||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 999999999998643
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.6e-19 Score=119.84 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=57.6
Q ss_pred cccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCC
Q 044864 59 YLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMG 119 (214)
Q Consensus 59 ~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~ 119 (214)
+|+|.+++++||.|||++|+++|..||.+|..||. |+|||++||++||+++|++.+++..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999988765
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=2.6e-19 Score=120.39 Aligned_cols=57 Identities=23% Similarity=0.571 Sum_probs=54.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCc
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLK 65 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~ 65 (214)
.|++++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 4789999999999999999999999878999999998 99999999999999999875
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.75 E-value=2.7e-19 Score=116.98 Aligned_cols=52 Identities=44% Similarity=0.861 Sum_probs=49.7
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864 11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63 (214)
Q Consensus 11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~ 63 (214)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999888999999998 999999999999999984
No 21
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.75 E-value=1.4e-18 Score=121.11 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=60.9
Q ss_pred ccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccc
Q 044864 60 LRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHR 126 (214)
Q Consensus 60 l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~ 126 (214)
++|.+++++||+|||++|+++|.+||.+|..||.+|||||++||++||+.++++.++. ++++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999998776 77776653
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.74 E-value=4.4e-19 Score=115.90 Aligned_cols=52 Identities=29% Similarity=0.691 Sum_probs=48.4
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864 11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63 (214)
Q Consensus 11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~ 63 (214)
+++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999878999999998 999999999999999984
No 23
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.73 E-value=1.5e-18 Score=132.05 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=72.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccc----cccccccccccchhhcc-----cCCCcCCCCChHH-HHHH
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAA----GLARCGKSCRLRWINYL-----RPDLKRGNFAEDE-EDLI 77 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~l-----~p~~~~~~Wt~eE-D~~L 77 (214)
+...++++||+|||+.|+++|++||.++|..|++.+ + +||+.||++||.+++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 345679999999999999999999998999999864 5 999999999999998 8999999999999 8999
Q ss_pred HHHHHhhCCc
Q 044864 78 IKLHALLGNR 87 (214)
Q Consensus 78 ~~lv~~~G~~ 87 (214)
+.++..||+.
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999963
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=2.7e-18 Score=115.42 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=52.7
Q ss_pred cCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhh
Q 044864 61 RPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLI 116 (214)
Q Consensus 61 ~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~ 116 (214)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 6999999999999999999999999998753
No 25
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.72 E-value=1.8e-18 Score=119.52 Aligned_cols=63 Identities=25% Similarity=0.408 Sum_probs=58.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccc-cccccccccchhhcccCCCcCCCCC
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGL-ARCGKSCRLRWINYLRPDLKRGNFA 70 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rs~~qcr~Rw~~~l~p~~~~~~Wt 70 (214)
++..++++||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56678999999999999999999998889999999976 8999999999999999999887653
No 26
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.70 E-value=1.1e-17 Score=109.21 Aligned_cols=50 Identities=28% Similarity=0.560 Sum_probs=46.7
Q ss_pred CcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 64 LKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 64 ~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
+++++||+|||++|+++|.+||. +|..||..|+|||++||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 999999999999999999999999987
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.70 E-value=1.5e-17 Score=114.90 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=56.4
Q ss_pred ccCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhhhhhCCC
Q 044864 60 LRPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP--GRTANEVKNYWNSHLRRKLINMGI 120 (214)
Q Consensus 60 l~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRt~~q~r~rw~~~l~~~~~~~~~ 120 (214)
..+..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++|++.+.+...
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 45677899999999999999999999 79999999999 999999999999999999887654
No 28
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.70 E-value=1.5e-17 Score=108.65 Aligned_cols=50 Identities=36% Similarity=0.748 Sum_probs=47.5
Q ss_pred CcCCCCChHHHHHHHHHHHhhCC-chhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 64 LKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 64 ~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
+++++||+|||++|+++|.+||. +|..||..|+|||++||++||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 799999999999999999999999986
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1e-17 Score=112.63 Aligned_cols=54 Identities=17% Similarity=0.524 Sum_probs=51.2
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864 9 QDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63 (214)
Q Consensus 9 ~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~ 63 (214)
+.+.+++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 578999999999999999999999888999999999 999999999999999865
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.67 E-value=9.6e-18 Score=114.27 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=49.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccc-cccccccccchhhcccCCCc
Q 044864 10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGL-ARCGKSCRLRWINYLRPDLK 65 (214)
Q Consensus 10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rs~~qcr~Rw~~~l~p~~~ 65 (214)
..+|++||+|||++|+++|.+||.++|..||+.+++ +|++.||++||.++++|+++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 357899999999999999999999899999997542 89999999999999998764
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.1e-16 Score=107.59 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=49.7
Q ss_pred cCCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 61 RPDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 61 ~p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
.+.+.+++||+|||++|+++|..|| ++|..||..|+|||++||++||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3568899999999999999999999 8999999999999999999999999865
No 32
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.64 E-value=1.5e-16 Score=104.30 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=46.3
Q ss_pred cCCCCChHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhh
Q 044864 65 KRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP--GRTANEVKNYWNSHLRR 113 (214)
Q Consensus 65 ~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRt~~q~r~rw~~~l~~ 113 (214)
++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 79999999999 99999999999999864
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.63 E-value=2e-16 Score=107.69 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=47.5
Q ss_pred CcCCCCChHHHHHHHHHHHhhC-CchhhhcccCC--CCCHHHHHHHHHHHhhhhh
Q 044864 64 LKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP--GRTANEVKNYWNSHLRRKL 115 (214)
Q Consensus 64 ~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp--gRt~~q~r~rw~~~l~~~~ 115 (214)
.++++||+|||++|+++|.+|| ++|..||..++ |||+.||++||.+++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999999999999999 69999999865 9999999999999998765
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-17 Score=114.31 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=56.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CccccccccccccccccccccchhhcccCCCcCCC
Q 044864 7 DKQDTNKGAWSKQEDQKLIDYIRKHGE-----GCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGN 68 (214)
Q Consensus 7 ~k~~~~kg~WT~eED~~L~~~v~~~g~-----~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~ 68 (214)
.+|+++++.||+|||++|+++|.+||. ++|..||++|+ +||..||+.||.+||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 378999999999999999999999996 67999999999 99999999999999998777664
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=5.2e-17 Score=106.48 Aligned_cols=50 Identities=30% Similarity=0.505 Sum_probs=46.6
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCccccccccccc-cccccccccchhhccc
Q 044864 12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGL-ARCGKSCRLRWINYLR 61 (214)
Q Consensus 12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~-~Rs~~qcr~Rw~~~l~ 61 (214)
++|+||+|||++|+++|.+||.++|..||+.|++ +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998889999999976 6999999999999875
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=110.41 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=54.3
Q ss_pred cCCCcCCCCChHHHHHHHHHHHhhC------CchhhhcccCCCCCHHHHHHHHHHHhhhhhhhCC
Q 044864 61 RPDLKRGNFAEDEEDLIIKLHALLG------NRWSLIAGRLPGRTANEVKNYWNSHLRRKLINMG 119 (214)
Q Consensus 61 ~p~~~~~~Wt~eED~~L~~lv~~~G------~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~ 119 (214)
+|.+.+++||.|||++|+++|..|| .+|..||..|+|||++||++||+++|.+.++.+-
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4788899999999999999999999 7899999999999999999999999998766543
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.7e-17 Score=112.53 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=53.6
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCC
Q 044864 7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGN 68 (214)
Q Consensus 7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~ 68 (214)
-.|.+++++||+|||++|+++|..||. +|..||+ ++ +|++.||+.||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 368899999999999999999999997 6999999 77 89999999999999998876653
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.1e-16 Score=106.98 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=47.3
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc
Q 044864 10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL 60 (214)
Q Consensus 10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l 60 (214)
.+.+++||+|||++|+++|.+||.++|..||+.|+.+|++.||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 466899999999999999999998899999999976899999999999875
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.60 E-value=1e-15 Score=127.84 Aligned_cols=89 Identities=15% Similarity=0.260 Sum_probs=74.5
Q ss_pred CCCcCCCCChHHHHHHHHHHHhhCCc------hhhhcccCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccccCCCCCC
Q 044864 62 PDLKRGNFAEDEEDLIIKLHALLGNR------WSLIAGRLPGRTANEVKNYWNSHLRRKLINMGIDPKNHRLHHSLPHNS 135 (214)
Q Consensus 62 p~~~~~~Wt~eED~~L~~lv~~~G~~------W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~~~~~~~e~~~~~~~~~~~ 135 (214)
+.+++++||+|||++|+++|.+||+. |..||+.|||||++|||+||+.+|++.+... |+.+++..+..... |
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~-G 81 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD-G 81 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT-S
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC-C
Confidence 35678899999999999999999975 9999999999999999999999999998854 99999887777665 7
Q ss_pred CCccccccccCCCCCCCCCCCCC
Q 044864 136 TGATSLGQQLVDMNEPAVKPRGD 158 (214)
Q Consensus 136 ~~~s~~~~~~~~~~~~~vkn~~~ 158 (214)
+ |..++ .|++ .||++..
T Consensus 82 n-~ikis-~lp~----siK~rft 98 (246)
T 1ign_A 82 N-LIKTK-VLPP----SIKRKFS 98 (246)
T ss_dssp C-BCEES-SCCC----CSCCCCC
T ss_pred C-ceeee-ccCc----cccCccc
Confidence 7 98888 5554 7778754
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.59 E-value=1e-15 Score=102.19 Aligned_cols=50 Identities=28% Similarity=0.390 Sum_probs=46.4
Q ss_pred CCCcCCCCChHHHHHHHHHHHhhC-CchhhhcccCC-CCCHHHHHHHHHHHh
Q 044864 62 PDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP-GRTANEVKNYWNSHL 111 (214)
Q Consensus 62 p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRt~~q~r~rw~~~l 111 (214)
..+.+++||+|||.+|+++|.+|| ++|..||..|+ |||++||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346688999999999999999999 89999999999 999999999998875
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.57 E-value=3.2e-16 Score=109.05 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=53.4
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcC
Q 044864 7 DKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKR 66 (214)
Q Consensus 7 ~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~ 66 (214)
..|.+++|+||+|||++|+++|..||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999997 6999999999 999999999999999876665
No 42
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-16 Score=113.64 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=53.2
Q ss_pred cccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 59 YLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 59 ~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
.++|.+.+++||.|||++|+++|..||.+|..||..|+|||++||++||+++|++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999998875
No 43
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.54 E-value=3.3e-16 Score=118.97 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=68.4
Q ss_pred ccCCCcCCCCChHHHHHHHHHHHhhCC-chhhhccc----CCCCCHHHHHHHHHHHhh-----hhhhhC-CCCccccccc
Q 044864 60 LRPDLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGR----LPGRTANEVKNYWNSHLR-----RKLINM-GIDPKNHRLH 128 (214)
Q Consensus 60 l~p~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRt~~q~r~rw~~~l~-----~~~~~~-~~~~~e~~~~ 128 (214)
+.+..++++||.|||+.|+++|.+||. +|+.|+.. |+|||+.+|++||.++++ +.++++ .|+++++..+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456678999999999999999999995 99999998 499999999999999999 777776 6667666666
Q ss_pred cCCCC-CCCCccc
Q 044864 129 HSLPH-NSTGATS 140 (214)
Q Consensus 129 ~~~~~-~~~~~s~ 140 (214)
..++. .|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 66655 7887776
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.53 E-value=5e-15 Score=105.65 Aligned_cols=69 Identities=25% Similarity=0.467 Sum_probs=60.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcccccccc----ccccccccccccchhhcc-----cCCCcCC-CCChHHHHHHHHHHHh
Q 044864 14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQA----AGLARCGKSCRLRWINYL-----RPDLKRG-NFAEDEEDLIIKLHAL 83 (214)
Q Consensus 14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~----~~~~Rs~~qcr~Rw~~~l-----~p~~~~~-~Wt~eED~~L~~lv~~ 83 (214)
++||+|||+.|+++|++||.++|..|++. |+ +||+.+|++||.+++ +|.++++ +...+...+++.+++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999985 77 999999999999987 6776665 6777777888888764
No 45
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.52 E-value=5.5e-15 Score=109.69 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=67.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccc----cccccccccccchhhcc-----cCCCcCCCCChHHHHH-H
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAA----GLARCGKSCRLRWINYL-----RPDLKRGNFAEDEEDL-I 77 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~l-----~p~~~~~~Wt~eED~~-L 77 (214)
++..++++||+|||+.|+++|++||.++|..|++.+ + +||..+|++||.+++ +|.++++.-++.|-.. +
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 467889999999999999999999998999999965 5 999999999999998 6899999888777664 8
Q ss_pred HHHHHhhC
Q 044864 78 IKLHALLG 85 (214)
Q Consensus 78 ~~lv~~~G 85 (214)
++|+..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887766
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.49 E-value=8.3e-15 Score=103.65 Aligned_cols=52 Identities=19% Similarity=0.463 Sum_probs=48.9
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864 6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY 59 (214)
Q Consensus 6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~ 59 (214)
+.+....++.||+|||++|+++|.+|| ++|..||++|+ +||..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 466778899999999999999999999 78999999999 99999999999997
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.48 E-value=4.5e-14 Score=98.35 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=47.0
Q ss_pred CCCcCCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864 62 PDLKRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLR 112 (214)
Q Consensus 62 p~~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~ 112 (214)
+...+++||.+||.+|++++..|| .+|..||.+|||||.+||++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999998765
No 48
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-14 Score=101.21 Aligned_cols=56 Identities=25% Similarity=0.373 Sum_probs=47.5
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCc
Q 044864 6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLK 65 (214)
Q Consensus 6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~ 65 (214)
.-.|++++|+||+|||++|+++|.+||.+ |..||+.| |||+.||+.||.. |....+
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 45689999999999999999999999976 99999999 7999999999985 444433
No 49
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.46 E-value=8.6e-15 Score=111.29 Aligned_cols=71 Identities=20% Similarity=0.270 Sum_probs=60.3
Q ss_pred CCCcCCCCChHHHHHHHHHHHhhC-Cchhhhccc----CCCCCHHHHHHHHHHHh-----hhhhhhCCCCccc-cccccC
Q 044864 62 PDLKRGNFAEDEEDLIIKLHALLG-NRWSLIAGR----LPGRTANEVKNYWNSHL-----RRKLINMGIDPKN-HRLHHS 130 (214)
Q Consensus 62 p~~~~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~----lpgRt~~q~r~rw~~~l-----~~~~~~~~~~~~e-~~~~~~ 130 (214)
...++++||.|||+.|+++|.+|| ++|+.|+.. |+|||+.+|++||.+++ .+.++++.|+++| +..+..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 345688999999999999999999 599999986 48999999999999999 5788888889888 454444
Q ss_pred CC
Q 044864 131 LP 132 (214)
Q Consensus 131 ~~ 132 (214)
++
T Consensus 107 ~h 108 (122)
T 2roh_A 107 AQ 108 (122)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.43 E-value=2.9e-14 Score=99.28 Aligned_cols=56 Identities=13% Similarity=0.402 Sum_probs=50.6
Q ss_pred ccCCCCCCcCCCCHHHHHHHHHHHHHhCC---Cccccccccccccccccccccchhhccc
Q 044864 5 CCDKQDTNKGAWSKQEDQKLIDYIRKHGE---GCWRTIPQAAGLARCGKSCRLRWINYLR 61 (214)
Q Consensus 5 ~~~k~~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~ 61 (214)
--+++...++.||+|||++|+.++..||. .+|..||++|| |||..||+.||.+++.
T Consensus 10 ~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 10 RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34678889999999999999999999993 47999999999 9999999999998764
No 51
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=6.9e-14 Score=98.91 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=44.8
Q ss_pred CCcCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 044864 63 DLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSH 110 (214)
Q Consensus 63 ~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~ 110 (214)
...+++||.|||.+|+++|.+||++|..||.+|++||+.||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999999999765
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-14 Score=104.50 Aligned_cols=53 Identities=19% Similarity=0.477 Sum_probs=49.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccC
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRP 62 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p 62 (214)
-+.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|..
T Consensus 11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 47789999999999999999999997 6999999999 99999999999998764
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=3.9e-13 Score=95.82 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHHHHhhCC-chhhhccc----CCCCCHHHHHHHHHHHhhhh
Q 044864 67 GNFAEDEEDLIIKLHALLGN-RWSLIAGR----LPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 67 ~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~----lpgRt~~q~r~rw~~~l~~~ 114 (214)
++||+|||+.|+++|.+||. +|+.|++. |+|||+++|++||.++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999995 99999985 89999999999999999643
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.38 E-value=6.4e-13 Score=98.55 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCCcCCCCChHHHHHHHHHHHhhCC-chhhhcccC----CCCCHHHHHHHHHHHhh-----hhhhhCCCCcc
Q 044864 62 PDLKRGNFAEDEEDLIIKLHALLGN-RWSLIAGRL----PGRTANEVKNYWNSHLR-----RKLINMGIDPK 123 (214)
Q Consensus 62 p~~~~~~Wt~eED~~L~~lv~~~G~-~W~~Ia~~l----pgRt~~q~r~rw~~~l~-----~~~~~~~~~~~ 123 (214)
+..++++||.|||+.|+++|.+||. +|+.|+..+ +|||+.+|++||.++++ +.++++.-.|.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~ 80 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQ 80 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCH
Confidence 4567899999999999999999995 999999965 89999999999999996 44444443333
No 55
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.33 E-value=1.8e-12 Score=86.74 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=45.7
Q ss_pred cCCCCChHHHHHHHHHHHhhCCchhhhc---ccCCCCCHHHHHHHHHHHhhh
Q 044864 65 KRGNFAEDEEDLIIKLHALLGNRWSLIA---GRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia---~~lpgRt~~q~r~rw~~~l~~ 113 (214)
++.+||+|||+.|+++|.+||.+|..|+ .++++||...+++||.++.+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 5789999999999999999999999999 678999999999999988764
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.26 E-value=5.1e-12 Score=91.84 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=45.6
Q ss_pred cCCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 65 KRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 65 ~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
.+++||.|||.+|++++..|| .+|..||..|||||.+||++||+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 68999999999999999999999988664
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.14 E-value=5.8e-11 Score=85.96 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=60.4
Q ss_pred ccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccC-----CCCCHHHHHHHHHHHhhhhhhhCC
Q 044864 49 GKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRL-----PGRTANEVKNYWNSHLRRKLINMG 119 (214)
Q Consensus 49 ~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~l-----pgRt~~q~r~rw~~~l~~~~~~~~ 119 (214)
..=+.++|.++|.+ .+||.||++.|++|+.+||.+|..|+..+ ++||..++|+||+.+.+..+...+
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35567899999976 79999999999999999999999999998 589999999999999998877664
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.13 E-value=7.8e-12 Score=90.86 Aligned_cols=47 Identities=13% Similarity=0.299 Sum_probs=43.5
Q ss_pred cCCCCHHHHHHHHHHHHHhC---CCccccccccccccccccccccchhhcc
Q 044864 13 KGAWSKQEDQKLIDYIRKHG---EGCWRTIPQAAGLARCGKSCRLRWINYL 60 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~g---~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l 60 (214)
++.||+|||++|+.++..|| ...|..||+.|| |||..||+.||.+++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 78999999999999999997 356999999999 999999999999864
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.4e-10 Score=77.85 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=43.9
Q ss_pred cCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864 65 KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLR 112 (214)
Q Consensus 65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~ 112 (214)
...+||++|+.++++++..||.+|..||..||+||..||..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 356999999999999999999999999999999999999999976543
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.96 E-value=1.7e-10 Score=77.17 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=44.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCcccccc---ccccccccccccccchhhccc
Q 044864 11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIP---QAAGLARCGKSCRLRWINYLR 61 (214)
Q Consensus 11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia---~~~~~~Rs~~qcr~Rw~~~l~ 61 (214)
.++.+||+|||+.|++.|++||. .|..|+ .++. +|+...+.+||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 46899999999999999999997 799999 4666 9999999999998654
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=76.48 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=46.1
Q ss_pred cCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864 6 CDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY 59 (214)
Q Consensus 6 ~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~ 59 (214)
.++.....+.||+||++++++++.+|| .+|..||..|+ +|+..||..+|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345556789999999999999999999 57999999999 99999999998754
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=1.1e-09 Score=75.87 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=44.8
Q ss_pred CCcCCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 63 DLKRGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 63 ~~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
..+.+.||.|||.+|.+++..|+ .+|..||..| |||.++|++||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34577999999999999999997 6799999998 99999999999887655
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.76 E-value=4.9e-09 Score=86.85 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=46.1
Q ss_pred cCCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 65 KRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 65 ~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
..++||+||+.++++++..||.+|..||+.|++||..||+++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999999999999999999999999988766
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=2.7e-09 Score=73.85 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=44.1
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCC---CccccccccccccccccccccchhhcccC
Q 044864 10 DTNKGAWSKQEDQKLIDYIRKHGE---GCWRTIPQAAGLARCGKSCRLRWINYLRP 62 (214)
Q Consensus 10 ~~~kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p 62 (214)
....+.||.|||++|.+++.+|+. +.|..||+++ ||+..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 456789999999999999999983 4699999997 59999999999876543
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.67 E-value=5e-09 Score=69.75 Aligned_cols=48 Identities=19% Similarity=0.526 Sum_probs=43.4
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCccccccc-cccccccccccccchhhccc
Q 044864 13 KGAWSKQEDQKLIDYIRKH--------GEGCWRTIPQ-AAGLARCGKSCRLRWINYLR 61 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~--------g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~~l~ 61 (214)
+.+||+|||+.|+++|..| |..-|..+++ .++ .+|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 5556999999 787 9999999999998874
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.64 E-value=3.3e-08 Score=68.38 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=42.7
Q ss_pred CCCCChHHHHHHHHHHHhhC----CchhhhcccCCCCCHHHHHHHHHHHhh
Q 044864 66 RGNFAEDEEDLIIKLHALLG----NRWSLIAGRLPGRTANEVKNYWNSHLR 112 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~lpgRt~~q~r~rw~~~l~ 112 (214)
...||.+|+.+|..+...|+ .+|..||..|||||..+|+.||..+++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45899999999999999998 479999999999999999999987744
No 67
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.62 E-value=1.8e-08 Score=92.16 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 67 GNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 67 ~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
..||.+|-.++++++.+||.+|..||..|..||..||+++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999765544
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.60 E-value=1e-08 Score=70.95 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=43.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CccccccccccccccccccccchhhcccC
Q 044864 13 KGAWSKQEDQKLIDYIRKHGE---GCWRTIPQAAGLARCGKSCRLRWINYLRP 62 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p 62 (214)
...||.+|+++|..++..|+. ++|..||..|| +|+..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 468999999999999999975 57999999999 99999999999977543
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.58 E-value=5.7e-08 Score=64.60 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=42.2
Q ss_pred CCCCChHHHHHHHHHHHhh--------CC-chhhhcc-cCCCCCHHHHHHHHHHHhh
Q 044864 66 RGNFAEDEEDLIIKLHALL--------GN-RWSLIAG-RLPGRTANEVKNYWNSHLR 112 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~--------G~-~W~~Ia~-~lpgRt~~q~r~rw~~~l~ 112 (214)
+.+||+|||..|++.|..| |+ -|..++. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 42 3999999 7999999999999998774
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.50 E-value=3.7e-08 Score=81.60 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=46.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhccc
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLR 61 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~ 61 (214)
......++||+||++++++++.+|| ++|..||+.|+ +||..||+.+|+++..
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3345578999999999999999999 56999999999 9999999999998754
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.28 E-value=1e-06 Score=76.43 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc---------------------------------
Q 044864 14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL--------------------------------- 60 (214)
Q Consensus 14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l--------------------------------- 60 (214)
+.||..|...++.++.+||..+|..||..|+ +++...++. |..++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~-Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~ 188 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIE-YNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKA 188 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHH-HHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHH-HHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 898877643 22110
Q ss_pred ------------------cCCCcCCCCChHHHHHHHHHHHhhC----Cchhhhcc------------cCCCCCHHHHHHH
Q 044864 61 ------------------RPDLKRGNFAEDEEDLIIKLHALLG----NRWSLIAG------------RLPGRTANEVKNY 106 (214)
Q Consensus 61 ------------------~p~~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~------------~lpgRt~~q~r~r 106 (214)
-+..+...||++||..|+-++.+|| +.|..|.. ++..||+.+|..|
T Consensus 189 l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rR 268 (304)
T 1ofc_X 189 LDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRR 268 (304)
T ss_dssp HHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHH
T ss_pred HHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 0112345899999999999999999 57999952 3467999999999
Q ss_pred HHHHhhhhh
Q 044864 107 WNSHLRRKL 115 (214)
Q Consensus 107 w~~~l~~~~ 115 (214)
...+++-..
T Consensus 269 c~tLi~~ie 277 (304)
T 1ofc_X 269 CNTLITLIE 277 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887543
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.2e-06 Score=57.53 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=44.0
Q ss_pred CCCcCCCCChHHHHHHHHHHHhhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 044864 62 PDLKRGNFAEDEEDLIIKLHALLGNRWSLIAG-RLPGRTANEVKNYWNS 109 (214)
Q Consensus 62 p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~-~lpgRt~~q~r~rw~~ 109 (214)
|.+....||+||-.+..+.+..||.+|..|++ .|++||..+|...|+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 56777899999999999999999999999999 5899999999988864
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.18 E-value=4.7e-07 Score=62.27 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=38.3
Q ss_pred CCCCChHHHHHHHHHHHhhCC----chhhhcccCCCCCHHHHHHHHH
Q 044864 66 RGNFAEDEEDLIIKLHALLGN----RWSLIAGRLPGRTANEVKNYWN 108 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G~----~W~~Ia~~lpgRt~~q~r~rw~ 108 (214)
.+.||.+|+.+|..+...|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999983 7999999999999999998873
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.18 E-value=2.9e-07 Score=63.27 Aligned_cols=44 Identities=11% Similarity=0.242 Sum_probs=39.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---ccccccccccccccccccccchh
Q 044864 13 KGAWSKQEDQKLIDYIRKHGEG---CWRTIPQAAGLARCGKSCRLRWI 57 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~g~~---~W~~Ia~~~~~~Rs~~qcr~Rw~ 57 (214)
.+.||.+|+++|..++..|+.+ .|.+||+.|| ||+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4589999999999999999754 6999999999 999999999985
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.15 E-value=4.2e-06 Score=60.21 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=52.0
Q ss_pred chhhcccCCCcCCCCChHHHHHHHHHHHhhCCchhhhcccCC-----CCCHHHHHHHHHHHhhhhhhhCC
Q 044864 55 RWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLP-----GRTANEVKNYWNSHLRRKLINMG 119 (214)
Q Consensus 55 Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lp-----gRt~~q~r~rw~~~l~~~~~~~~ 119 (214)
.|..+|. ...||.||.+.|++|+..|+-+|..|+..+. +||..++|+||+.+.++.+...+
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 4555554 3589999999999999999999999998863 79999999999999998876554
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.08 E-value=5.7e-06 Score=58.92 Aligned_cols=48 Identities=17% Similarity=0.293 Sum_probs=43.9
Q ss_pred CCCChHHHHHHHHHHHhhCC---chhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 67 GNFAEDEEDLIIKLHALLGN---RWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 67 ~~Wt~eED~~L~~lv~~~G~---~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
-.||.|||..||...++-|. .|..||..|.+|+.+||++||+.+++-.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 37999999999999999985 8999999999999999999999888654
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.30 E-value=6.1e-07 Score=60.59 Aligned_cols=45 Identities=13% Similarity=0.350 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHHhhCC---chhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 68 NFAEDEEDLIIKLHALLGN---RWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G~---~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
.||.|||..|+..+.+-|. .|..||..| +||++||.+||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999996 799999999 99999999999887753
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=5.4e-06 Score=55.60 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=43.5
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCccccccc-cccccccccccccchhh
Q 044864 8 KQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQ-AAGLARCGKSCRLRWIN 58 (214)
Q Consensus 8 k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~ 58 (214)
.|.+....||+||-++..+++.+||. +|..|++ .|+ +|+..||..-|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 46777899999999999999999995 6999998 588 9999999887754
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.82 E-value=2.3e-05 Score=56.67 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=41.5
Q ss_pred CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHH
Q 044864 66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSH 110 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~ 110 (214)
...||++|.++..+....||.+|..||..||+||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999988643
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.79 E-value=3.1e-05 Score=52.94 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHHhhCCchhhhcc-cCCCCCHHHHHHHHHH
Q 044864 66 RGNFAEDEEDLIIKLHALLGNRWSLIAG-RLPGRTANEVKNYWNS 109 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~-~lpgRt~~q~r~rw~~ 109 (214)
...||++|-.+..+.+..||.+|..|++ .|++||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999998873
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.74 E-value=9.9e-06 Score=74.07 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=43.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhc
Q 044864 10 DTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINY 59 (214)
Q Consensus 10 ~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~ 59 (214)
.....+||.||-+++++++.+|| .+|..||+.|+ +|+..||+..|.++
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34578999999999999999999 57999999999 99999999998765
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.64 E-value=1.4e-05 Score=57.57 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=43.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCcccccccccc----ccccccccccchhhccc
Q 044864 11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAG----LARCGKSCRLRWINYLR 61 (214)
Q Consensus 11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rs~~qcr~Rw~~~l~ 61 (214)
+..+.||.||+..|++++++|+.. |..|+..+. .+||..++++||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999976 999999882 27999999999987643
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.46 E-value=3.6e-05 Score=55.60 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=39.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhh
Q 044864 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWIN 58 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~ 58 (214)
...||+||-+++.+++..|| ++|..|++.++ +|+..+|.+-|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhc
Confidence 36899999999999999999 56999999999 9999999987753
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.38 E-value=5.6e-05 Score=51.66 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=39.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCccccccc-cccccccccccccchhh
Q 044864 12 NKGAWSKQEDQKLIDYIRKHGEGCWRTIPQ-AAGLARCGKSCRLRWIN 58 (214)
Q Consensus 12 ~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~ 58 (214)
....||+||-++..+++.+||. +|..|++ .|+ +|+..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 3568999999999999999995 6999999 588 9999999987763
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.37 E-value=0.00014 Score=51.24 Aligned_cols=49 Identities=16% Similarity=0.406 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHHHHHhhC----------CchhhhcccC----CCCCHHHHHHHHHHHhhhh
Q 044864 66 RGNFAEDEEDLIIKLHALLG----------NRWSLIAGRL----PGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G----------~~W~~Ia~~l----pgRt~~q~r~rw~~~l~~~ 114 (214)
...||.+|...||++...+. ..|..||..| -.||+.||+.+|.++.+..
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999987632 2599999987 3799999999999988876
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.19 E-value=4.5e-05 Score=53.94 Aligned_cols=49 Identities=27% Similarity=0.580 Sum_probs=40.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------Cccccccccc---cccccccccccchhhcc
Q 044864 12 NKGAWSKQEDQKLIDYIRKHGE---------GCWRTIPQAA---GLARCGKSCRLRWINYL 60 (214)
Q Consensus 12 ~kg~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~~---~~~Rs~~qcr~Rw~~~l 60 (214)
+...||.+|...|+++...+.. .-|..||..| |..|++.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999876421 1599999976 34799999999998864
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.24 E-value=6.1e-05 Score=50.81 Aligned_cols=46 Identities=11% Similarity=0.293 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC--Cccccccccccccccccccccchhhccc
Q 044864 14 GAWSKQEDQKLIDYIRKHGE--GCWRTIPQAAGLARCGKSCRLRWINYLR 61 (214)
Q Consensus 14 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~ 61 (214)
-.||.|||..++..+++.|. .-|..||+.+ +|++.|+..||..++.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 47999999999999999986 2499999888 5999999999987543
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.07 E-value=0.00072 Score=59.95 Aligned_cols=100 Identities=20% Similarity=0.334 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccccccccccccccccccccchhhcc-------c-------------------------
Q 044864 14 GAWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYL-------R------------------------- 61 (214)
Q Consensus 14 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l-------~------------------------- 61 (214)
+.||.-|=..++.++.+||..+-..||..|+.+++...++ +|..++ .
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999985357766554 232211 0
Q ss_pred --------------------CC-CcCCCCChHHHHHHHHHHHhhC----Cchhhhccc------------CCCCCHHHHH
Q 044864 62 --------------------PD-LKRGNFAEDEEDLIIKLHALLG----NRWSLIAGR------------LPGRTANEVK 104 (214)
Q Consensus 62 --------------------p~-~~~~~Wt~eED~~L~~lv~~~G----~~W~~Ia~~------------lpgRt~~q~r 104 (214)
+. .+...||++||..||-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 00 0345799999999999999999 579998322 3679999999
Q ss_pred HHHHHHhhhh
Q 044864 105 NYWNSHLRRK 114 (214)
Q Consensus 105 ~rw~~~l~~~ 114 (214)
.|...+|+-.
T Consensus 283 rRc~tLi~~I 292 (374)
T 2y9y_A 283 RRGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 89
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.02 E-value=0.00022 Score=50.81 Aligned_cols=45 Identities=16% Similarity=0.388 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC--Cccccccccccccccccccccchhhc
Q 044864 14 GAWSKQEDQKLIDYIRKHGE--GCWRTIPQAAGLARCGKSCRLRWINY 59 (214)
Q Consensus 14 g~WT~eED~~L~~~v~~~g~--~~W~~Ia~~~~~~Rs~~qcr~Rw~~~ 59 (214)
-.||.|||..++...++.|. .-|..||+.++ +|+..|+.+||+.+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 37999999999999999985 35999999998 99999999999864
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.89 E-value=0.00058 Score=55.62 Aligned_cols=45 Identities=13% Similarity=0.348 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHHHhhC-Cchhhhcc--cC----------CC--CCHHHHHHHHHHHhh
Q 044864 68 NFAEDEEDLIIKLHALLG-NRWSLIAG--RL----------PG--RTANEVKNYWNSHLR 112 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~--~l----------pg--Rt~~q~r~rw~~~l~ 112 (214)
.||.+||..|+-.+.+|| ++|..|.. .+ .. ++...+..|...+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 599999999999999999 99999843 11 12 456678888766655
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.54 E-value=0.002 Score=52.37 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=34.2
Q ss_pred CCCccCCCCCCcCCCCHHHHHHHHHHHHHhCCCccccccc
Q 044864 2 RKPCCDKQDTNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQ 41 (214)
Q Consensus 2 r~~~~~k~~~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~ 41 (214)
+-|++.++......||.+||..|+..|.+||.++|..|-.
T Consensus 123 ~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 123 TIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 4566777766677899999999999999999999999965
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.39 E-value=0.0058 Score=43.77 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=40.9
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCcccccccccc----ccccccccccchhhcc
Q 044864 11 TNKGAWSKQEDQKLIDYIRKHGEGCWRTIPQAAG----LARCGKSCRLRWINYL 60 (214)
Q Consensus 11 ~~kg~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~----~~Rs~~qcr~Rw~~~l 60 (214)
++...||.||...|.+++++|... |--|+.... ..|+..+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999966 999987663 2689999999998764
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=94.92 E-value=0.022 Score=48.46 Aligned_cols=29 Identities=38% Similarity=0.719 Sum_probs=26.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCccccccc
Q 044864 13 KGAWSKQEDQKLIDYIRKHGEGCWRTIPQ 41 (214)
Q Consensus 13 kg~WT~eED~~L~~~v~~~g~~~W~~Ia~ 41 (214)
...|+.+||..|+..|.+||.|+|..|-.
T Consensus 168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 168 SSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 35799999999999999999999999954
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.47 E-value=0.066 Score=46.22 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHh
Q 044864 66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHL 111 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l 111 (214)
-+.||..+...++.++.+|| .+|..||..|+|+|..+|+.++....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45799999999999999999 68999999999999999987765443
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.11 E-value=0.1 Score=34.74 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=39.6
Q ss_pred cCCCCChHHHHHHHHHHHhhCCc---hhhhcccC--CCCCHHHHHHHHHHHh
Q 044864 65 KRGNFAEDEEDLIIKLHALLGNR---WSLIAGRL--PGRTANEVKNYWNSHL 111 (214)
Q Consensus 65 ~~~~Wt~eED~~L~~lv~~~G~~---W~~Ia~~l--pgRt~~q~r~rw~~~l 111 (214)
.+-.||+|.-+..+++|..+|.. +..|-+.| +|.|..+|+.+.+.+.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999954 77887775 7999999998876554
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.52 E-value=0.17 Score=42.97 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=24.1
Q ss_pred CCChHHHHHHHHHHHhhC-Cchhhhcc
Q 044864 68 NFAEDEEDLIIKLHALLG-NRWSLIAG 93 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G-~~W~~Ia~ 93 (214)
.|+.+||..|+-.|.+|| ++|..|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 599999999999999999 99999953
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.74 E-value=0.23 Score=32.96 Aligned_cols=49 Identities=8% Similarity=0.169 Sum_probs=35.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCC--ccccccccccc-cccccccccchhhc
Q 044864 11 TNKGAWSKQEDQKLIDYIRKHGEG--CWRTIPQAAGL-ARCGKSCRLRWINY 59 (214)
Q Consensus 11 ~~kg~WT~eED~~L~~~v~~~g~~--~W~~Ia~~~~~-~Rs~~qcr~Rw~~~ 59 (214)
..+-.||+|.-++.+++|...|.. -++.|.+.|+. +.|..++..+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457799999999999999999943 15677776652 55666666554443
No 98
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=69.54 E-value=4.1 Score=31.80 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=22.2
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhCCCcccccc
Q 044864 9 QDTNKGAWSKQEDQKLI--------DYIRKHGEGCWRTIP 40 (214)
Q Consensus 9 ~~~~kg~WT~eED~~L~--------~~v~~~g~~~W~~Ia 40 (214)
|.-..|-||+|+|+.|. .++++|| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 34568999999999886 5788887 44554
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=66.93 E-value=10 Score=33.45 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=36.4
Q ss_pred CCCCChHHHHHHHHHHHhhC-CchhhhcccCC-CCCHHHHHHHH
Q 044864 66 RGNFAEDEEDLIIKLHALLG-NRWSLIAGRLP-GRTANEVKNYW 107 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G-~~W~~Ia~~lp-gRt~~q~r~rw 107 (214)
.+.||.-+=..++.+..+|| .+-..||..|. |+|..+|+.+.
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~ 166 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA 166 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH
Confidence 45799999999999999999 67999999997 99999998554
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=64.80 E-value=4 Score=29.74 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.9
Q ss_pred HHHHHHHhhCC--------chhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 76 LIIKLHALLGN--------RWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 76 ~L~~lv~~~G~--------~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
.|..+|...|+ .|..||..|.--.+..++..|..+|-+.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 37777888774 6999999983333789999999999886
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=64.80 E-value=2.1 Score=31.70 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccccccccccccccc----cccccchhhcccCCCcCCCCChHHHHHHHHHHH
Q 044864 35 CWRTIPQAAGLARCG----KSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHA 82 (214)
Q Consensus 35 ~W~~Ia~~~~~~Rs~----~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~ 82 (214)
-|..||..|+...+. ...+..|.++|.|- ..++++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 599999999754433 46678888888763 2377888888877664
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=63.53 E-value=9.4 Score=27.10 Aligned_cols=39 Identities=15% Similarity=0.303 Sum_probs=29.6
Q ss_pred HHHHHHHhhCC--------chhhhcccCCCC-C---HHHHHHHHHHHhhhh
Q 044864 76 LIIKLHALLGN--------RWSLIAGRLPGR-T---ANEVKNYWNSHLRRK 114 (214)
Q Consensus 76 ~L~~lv~~~G~--------~W~~Ia~~lpgR-t---~~q~r~rw~~~l~~~ 114 (214)
.|..+|...|+ .|..||..|.-- + +.+++..|..+|.+.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777777773 699999998221 2 578899999998876
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=63.13 E-value=8.2 Score=28.10 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.0
Q ss_pred HHHHHHHhhCC--------chhhhcccCCCC----CHHHHHHHHHHHhhhh
Q 044864 76 LIIKLHALLGN--------RWSLIAGRLPGR----TANEVKNYWNSHLRRK 114 (214)
Q Consensus 76 ~L~~lv~~~G~--------~W~~Ia~~lpgR----t~~q~r~rw~~~l~~~ 114 (214)
+|..+|...|+ .|..||..|.-- .+.+++..|..+|-+.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 47778888873 699999998221 1568899999998886
No 104
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.90 E-value=9.3 Score=24.00 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 72 DEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 72 eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
+.+..++.++-..|-.+.+||..+ |-+...|+.+....++.-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345556666667789999999999 889999988776655443
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=59.65 E-value=6.1 Score=29.18 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHHhhCC--------chhhhcccCCCCCHHHHHHHHHHHhhhhhh
Q 044864 77 IIKLHALLGN--------RWSLIAGRLPGRTANEVKNYWNSHLRRKLI 116 (214)
Q Consensus 77 L~~lv~~~G~--------~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~ 116 (214)
|..+|...|+ .|..||..|.--.+..++..|..+|-+.-.
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 6666776663 699999997333389999999999999744
No 106
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=58.66 E-value=11 Score=24.29 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=30.4
Q ss_pred HHHHHHHHHHh----hCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 73 EEDLIIKLHAL----LGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 73 ED~~L~~lv~~----~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
.+..++.+.-. .|..+.+||..| |-+...|+.+....+++-
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 44455555554 578899999999 899999998877666544
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=57.85 E-value=12 Score=27.46 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHHhhCC--------chhhhcccCCC-C---CHHHHHHHHHHHhhhhhh
Q 044864 76 LIIKLHALLGN--------RWSLIAGRLPG-R---TANEVKNYWNSHLRRKLI 116 (214)
Q Consensus 76 ~L~~lv~~~G~--------~W~~Ia~~lpg-R---t~~q~r~rw~~~l~~~~~ 116 (214)
+|..+|...|+ .|..||..|.- . ...+++..|..+|.+.-.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 47777777773 69999999822 2 256889999999988643
No 108
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=57.78 E-value=3.6 Score=28.61 Aligned_cols=45 Identities=16% Similarity=0.455 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCccccccccccccccccccccchhhcccCCC-------cCCCCChHHHHHHH
Q 044864 21 DQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDL-------KRGNFAEDEEDLII 78 (214)
Q Consensus 21 D~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~-------~~~~Wt~eED~~L~ 78 (214)
+.+|.++|..|| |..++..+. ..|.. .+|++ ++.+|-.+.-+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 568899999999 999998776 23322 34543 57899988777654
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=57.52 E-value=12 Score=27.42 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=29.8
Q ss_pred HHHHHHHhhCC--------chhhhcccCCC--CC--HHHHHHHHHHHhhhh
Q 044864 76 LIIKLHALLGN--------RWSLIAGRLPG--RT--ANEVKNYWNSHLRRK 114 (214)
Q Consensus 76 ~L~~lv~~~G~--------~W~~Ia~~lpg--Rt--~~q~r~rw~~~l~~~ 114 (214)
+|..+|...|+ .|..|+..|.- -+ +..+|..|..+|-+.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~y 96 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPY 96 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 47777888774 69999999822 11 468899999999887
No 110
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.01 E-value=2.5 Score=30.90 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHhC-------CCccccccccccccccccccccchhhcccC
Q 044864 23 KLIDYIRKHG-------EGCWRTIPQAAGLARCGKSCRLRWINYLRP 62 (214)
Q Consensus 23 ~L~~~v~~~g-------~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p 62 (214)
+|..+|.+.| .+.|..||..|+... +..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 4667777776 235999999998433 77888888888765
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=55.15 E-value=15 Score=27.10 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCC--------chhhhcccC--CCC---CHHHHHHHHHHHhhhhh
Q 044864 75 DLIIKLHALLGN--------RWSLIAGRL--PGR---TANEVKNYWNSHLRRKL 115 (214)
Q Consensus 75 ~~L~~lv~~~G~--------~W~~Ia~~l--pgR---t~~q~r~rw~~~l~~~~ 115 (214)
-.|..+|...|+ .|..||..| +.. ...+++..|..+|.+.-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 357788888884 699999998 322 25789999999999863
No 112
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=54.57 E-value=12 Score=27.52 Aligned_cols=84 Identities=17% Similarity=0.311 Sum_probs=53.2
Q ss_pred cCCCCHHHH--HHHHHHHHHhCCCccccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHHHHHhhCC----
Q 044864 13 KGAWSKQED--QKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGN---- 86 (214)
Q Consensus 13 kg~WT~eED--~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~lv~~~G~---- 86 (214)
+.+|.+.+. +.|....+..|.. ...++. ++ +|.- +=-+|..+|...|+
T Consensus 7 ~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~-i~-gk~l-----------------------DL~~Ly~~V~~~GG~~~V 60 (121)
T 2rq5_A 7 GRRWGPNVQRLACIKKHLRSQGIT-MDELPL-IG-GCEL-----------------------DLACFFRLINEMGGMQQV 60 (121)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCC-CSSCCE-ET-TEEC-----------------------CHHHHHHHHHHTTSHHHH
T ss_pred hHhcCCcHHHHHHHHHHHHHcCCC-CCCCCc-CC-CEec-----------------------cHHHHHHHHHHcCcHHHh
Confidence 567887775 4566666676743 444442 22 2221 11247788888884
Q ss_pred ----chhhhcccC--CCC---CHHHHHHHHHHHhhhhhhhCCCCcccc
Q 044864 87 ----RWSLIAGRL--PGR---TANEVKNYWNSHLRRKLINMGIDPKNH 125 (214)
Q Consensus 87 ----~W~~Ia~~l--pgR---t~~q~r~rw~~~l~~~~~~~~~~~~e~ 125 (214)
.|..||..| |.- ....++..|..+|-+.-. ++++|.
T Consensus 61 t~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~ 105 (121)
T 2rq5_A 61 TDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEH 105 (121)
T ss_dssp HHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHH
T ss_pred cccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHH
Confidence 699999998 322 256889999999988743 445443
No 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=54.23 E-value=13 Score=28.16 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=31.0
Q ss_pred HHHHHHHhhCC--------chhhhcccC--CCC---CHHHHHHHHHHHhhhhh
Q 044864 76 LIIKLHALLGN--------RWSLIAGRL--PGR---TANEVKNYWNSHLRRKL 115 (214)
Q Consensus 76 ~L~~lv~~~G~--------~W~~Ia~~l--pgR---t~~q~r~rw~~~l~~~~ 115 (214)
.|..+|...|+ .|..|+..| +.. ...+++..|..+|-+.-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 47777888874 699999998 332 25789999999999873
No 114
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=51.44 E-value=13 Score=23.60 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=30.0
Q ss_pred HHHHHHHHHH----hhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 73 EEDLIIKLHA----LLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 73 ED~~L~~lv~----~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
.+..++.+.- ..|-.+.+||..| |-|...|+.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3444454544 3468899999999 899999998887766554
No 115
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=46.56 E-value=8.6 Score=26.76 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=27.6
Q ss_pred HHHHHHhhC--------CchhhhcccC--CC-C-CHHHHHHHHHHHhhhh
Q 044864 77 IIKLHALLG--------NRWSLIAGRL--PG-R-TANEVKNYWNSHLRRK 114 (214)
Q Consensus 77 L~~lv~~~G--------~~W~~Ia~~l--pg-R-t~~q~r~rw~~~l~~~ 114 (214)
|..+|...| +.|..|+..| +. - .+.+++..|..+|.+.
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 666777766 3699999987 21 1 2568899998888765
No 116
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=44.91 E-value=23 Score=23.77 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 73 EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 73 ED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
.+..++.++...|-.-.+||..| |-+...|+.+....+++
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666666788899999999 88999998887654443
No 117
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=41.28 E-value=21 Score=27.81 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCCcCCCCChHHHHHHH
Q 044864 62 PDLKRGNFAEDEEDLII 78 (214)
Q Consensus 62 p~~~~~~Wt~eED~~L~ 78 (214)
|....|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 55678999999999887
No 118
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=40.72 E-value=15 Score=26.08 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHHhhC--------CchhhhcccC--CCC---CHHHHHHHHHHHhhhhh
Q 044864 76 LIIKLHALLG--------NRWSLIAGRL--PGR---TANEVKNYWNSHLRRKL 115 (214)
Q Consensus 76 ~L~~lv~~~G--------~~W~~Ia~~l--pgR---t~~q~r~rw~~~l~~~~ 115 (214)
.|..+|...| +.|..||..| +.. .+.+++..|..+|.+.-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE 89 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE 89 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4777777777 3699999987 221 24689999999998763
No 119
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=39.33 E-value=21 Score=26.90 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhh
Q 044864 72 DEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLIN 117 (214)
Q Consensus 72 eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~ 117 (214)
+-|..|+.+....| -.+..||+.+ |=|...|+.|...+....+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888888777 6899999999 999999999998887776543
No 120
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.80 E-value=46 Score=21.17 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 69 FAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 69 Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
+|+.|-+. +.++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQV-LSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHH-HHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45555444 4454 6678899999999 88999998877665554
No 121
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.39 E-value=34 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=24.6
Q ss_pred hhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 83 LLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 83 ~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
..|-...+||..| |-+...|+.+....++.-
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3467789999999 889999998887666543
No 122
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.99 E-value=42 Score=22.31 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=29.7
Q ss_pred HHHHHHHHHHh----hCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 73 EEDLIIKLHAL----LGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 73 ED~~L~~lv~~----~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
.+..++.+.-. .|-.+..||..| |-|...|+.+-...+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445555444 567899999999 899999998776666544
No 123
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.25 E-value=53 Score=24.45 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=24.6
Q ss_pred hhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 83 LLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 83 ~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
..|-...+||..| |-+...|+.+....+++-
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3467899999999 899999998887665543
No 124
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.08 E-value=60 Score=21.93 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+....+++.
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3467877777655443 788899999999 899999998887766553
No 125
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=32.22 E-value=51 Score=20.55 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 68 NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
.+|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++-
T Consensus 11 ~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 11 LLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 466666655544 4 6677899999999 889999988777655443
No 126
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.02 E-value=55 Score=22.17 Aligned_cols=44 Identities=27% Similarity=0.265 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 68 NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666665554 44 6788899999999 889999998877666554
No 127
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.39 E-value=72 Score=19.08 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 74 EDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 74 D~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
+..++.+ -..|-.-.+||..| |-+...|+.+....+++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 3445555 35677889999999 889999998877666543
No 128
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=31.10 E-value=52 Score=20.55 Aligned_cols=32 Identities=16% Similarity=0.040 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHhhCCchhhhcccCCCCCHHHH
Q 044864 71 EDEEDLIIKLHALLGNRWSLIAGRLPGRTANEV 103 (214)
Q Consensus 71 ~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~ 103 (214)
.-|.+.|.++...++++....|+.| |=+...+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL 49 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNL 49 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHH
Confidence 3477788899999999999999988 5554444
No 129
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.68 E-value=59 Score=21.34 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=32.0
Q ss_pred CCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 68 NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
..|+.|-+.|. ++ ..|..-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46666665544 44 6788899999999 88999999877665554
No 130
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=29.95 E-value=58 Score=22.98 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHH
Q 044864 70 AEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVK 104 (214)
Q Consensus 70 t~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r 104 (214)
++.-+..|..+....|..|..+|..| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 55666778888888999999999999 76666553
No 131
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.83 E-value=71 Score=22.51 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 73 EEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 73 ED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
.+..++.++...|-...+||..| |-+...|+.+....++.
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44455666667788999999999 88999998877654433
No 132
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=29.24 E-value=17 Score=19.57 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=6.0
Q ss_pred CCCCccCC
Q 044864 1 MRKPCCDK 8 (214)
Q Consensus 1 ~r~~~~~k 8 (214)
||.|||--
T Consensus 14 ~riPCCG~ 21 (28)
T 1y29_A 14 QKIPCCGV 21 (28)
T ss_dssp CSCCBSSC
T ss_pred cccccccc
Confidence 78888843
No 133
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=28.60 E-value=76 Score=21.37 Aligned_cols=35 Identities=20% Similarity=0.047 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHH
Q 044864 71 EDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNY 106 (214)
Q Consensus 71 ~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~r 106 (214)
.-|...|.++...+|++....|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477788899999999999999998 6666665443
No 134
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.36 E-value=12 Score=28.35 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCccccccccccccccccccccchhhcccCC
Q 044864 19 QEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCRLRWINYLRPD 63 (214)
Q Consensus 19 eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~ 63 (214)
+-|.+|+.++++.|.-.+..||+.++ -+...|+.|.......+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45888999999988888999999996 77778888877654433
No 135
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.37 E-value=56 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=21.4
Q ss_pred HHHHHHHhhCCchhhhcccCCCCCHHHH
Q 044864 76 LIIKLHALLGNRWSLIAGRLPGRTANEV 103 (214)
Q Consensus 76 ~L~~lv~~~G~~W~~Ia~~lpgRt~~q~ 103 (214)
.|..++...|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 46666788999999999998 6666555
No 136
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.69 E-value=87 Score=22.70 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhh
Q 044864 72 DEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLI 116 (214)
Q Consensus 72 eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~ 116 (214)
+-|..|+.+....| -.+..||+.+ |=+...|..+...+....+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 34567777777766 6899999999 88999999999887766654
No 137
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.35 E-value=52 Score=23.61 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhCCchhhhcccCCCCCHHHHH
Q 044864 74 EDLIIKLHALLGNRWSLIAGRLPGRTANEVK 104 (214)
Q Consensus 74 D~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r 104 (214)
|..|..+....|..|..+|..| |=+..+|.
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~ 42 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQ 42 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHH
Confidence 4567777889999999999999 66666553
No 138
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.08 E-value=59 Score=24.65 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhh
Q 044864 72 DEEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLI 116 (214)
Q Consensus 72 eED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~ 116 (214)
+-|..|+.+....| ..+..||+.+ |-+...|+.|...+....+.
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 45667777777776 6899999999 88999999999887776654
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=25.76 E-value=59 Score=23.41 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=21.2
Q ss_pred HHHHHHHhhCCchhhhcccCCCCCHHHH
Q 044864 76 LIIKLHALLGNRWSLIAGRLPGRTANEV 103 (214)
Q Consensus 76 ~L~~lv~~~G~~W~~Ia~~lpgRt~~q~ 103 (214)
.|..++...|..|..+|+.| |=+..+|
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 46666788999999999998 6665554
No 140
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=25.44 E-value=82 Score=24.11 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=26.2
Q ss_pred HHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 77 IIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 77 L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
++.+.-..|-...+||..| |-+...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3334344567899999999 89999998887655543
No 141
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.90 E-value=63 Score=21.47 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 68 NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 35666655554 44 5788899999999 88999999887666554
No 142
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=23.11 E-value=97 Score=21.77 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhCCchhhhcccCCCCCHHHHHH
Q 044864 74 EDLIIKLHALLGNRWSLIAGRLPGRTANEVKN 105 (214)
Q Consensus 74 D~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~ 105 (214)
+..|..++...|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4455666777899999999999 666665543
No 143
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.08 E-value=76 Score=22.57 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=23.3
Q ss_pred hhCCchhhhcccCCCCCHHHHHHHHHHHhhh
Q 044864 83 LLGNRWSLIAGRLPGRTANEVKNYWNSHLRR 113 (214)
Q Consensus 83 ~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~ 113 (214)
..|-...+||..| |-+...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567889999999 88999998887655443
No 144
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=22.84 E-value=83 Score=22.91 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhC-CchhhhcccCCCCCHHHHHHHHHHHhhhhhhh
Q 044864 73 EEDLIIKLHALLG-NRWSLIAGRLPGRTANEVKNYWNSHLRRKLIN 117 (214)
Q Consensus 73 ED~~L~~lv~~~G-~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~~~~ 117 (214)
-|..|+.+....| ..+..||+.+ |-+...|..+...+....+..
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 4556777777766 6899999999 889999999998887776543
No 145
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.34 E-value=1.1e+02 Score=16.66 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=26.3
Q ss_pred CCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHH
Q 044864 68 NFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNY 106 (214)
Q Consensus 68 ~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~r 106 (214)
..+.++-..++.++ .-|.....||+.| |-+...|...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~ 41 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVY 41 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHH
Confidence 45666666666665 4577889999998 7787777654
No 146
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=20.42 E-value=51 Score=21.96 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCccccccccccccccccccc
Q 044864 15 AWSKQEDQKLIDYIRKHGEGCWRTIPQAAGLARCGKSCR 53 (214)
Q Consensus 15 ~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~~Rs~~qcr 53 (214)
..|..-++++..+....|...=-.||+.+| -|+++++-
T Consensus 6 qls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VN 43 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVN 43 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTH
T ss_pred hhhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcC
Confidence 455665778889999999887788999999 88998763
No 147
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=20.26 E-value=33 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.358 Sum_probs=27.0
Q ss_pred cccccccccccccccccccchhhcccCCCcCCCCChHHHHHHHH
Q 044864 36 WRTIPQAAGLARCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIK 79 (214)
Q Consensus 36 W~~Ia~~~~~~Rs~~qcr~Rw~~~l~p~~~~~~Wt~eED~~L~~ 79 (214)
=..||..+. |+++.+||.-|. + ...||+||++.|.+
T Consensus 118 c~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 357788887 999999988653 2 33699999988764
No 148
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.24 E-value=1.5e+02 Score=20.31 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=34.4
Q ss_pred CCCCChHHHHHHHHHHHhhCCchhhhcccCCCCCHHHHHHHHHHHhhhh
Q 044864 66 RGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTANEVKNYWNSHLRRK 114 (214)
Q Consensus 66 ~~~Wt~eED~~L~~lv~~~G~~W~~Ia~~lpgRt~~q~r~rw~~~l~~~ 114 (214)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44678777776644 3 3688889999999 889999998777665543
Done!