BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044867
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis
Thaliana
Length = 176
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLLNAIQASAISV 68
KYDVF+SFRG DTR NF S LY L R++I+TF DD +L G S L + I+ S +V
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 69 IVFSEGYASSIWC 81
+V SE YA+S WC
Sbjct: 68 VVVSENYAASSWC 80
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI-DDQLNRGDEISESLLNAIQASAISV 68
+Y+VF+SFRG DTR+ FT LY +L R I TF DD+L +G EI +LL AI S I V
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 69 IVFSEGYASSIWC 81
+ S GYA S WC
Sbjct: 95 PIISSGYADSKWC 107
>pdb|3JZL|A Chain A, Crystal Structure Of A Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Lmof2365_1314) From
Listeria Monocytogenes Str. 4b F2365 At 1.91 A
Resolution
pdb|3JZL|B Chain B, Crystal Structure Of A Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Lmof2365_1314) From
Listeria Monocytogenes Str. 4b F2365 At 1.91 A
Resolution
Length = 409
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 36 RQNIQTFIDDQLNRGDEISE----SLLNAIQASAISVIVF--SEGYA 76
R+ ++T IDD N+ DEI+E +L+A Q + +S F S GY
Sbjct: 9 RKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYG 55
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI---DDQLNRGDEISESLLNAIQ 62
+ N ++ F+S+ D+ + L L +++ I + + G ISE++++ I+
Sbjct: 31 KRNVRFHAFISYSEHDSL-WVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIE 89
Query: 63 ASAISVIVFSEGYASSIWC 81
S S+ V S + + WC
Sbjct: 90 KSYKSIFVLSPNFVQNEWC 108
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 43 IDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIW 80
+++Q+NR DE++E+ ++A V S Y W
Sbjct: 174 VEEQINRFDELAENSTEEVRAKXKENFVISSYYEYQFW 211
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 43 IDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIW 80
+++Q+NR DE++E+ ++A V S Y W
Sbjct: 199 VEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFW 236
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 43 IDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIW 80
+++Q+NR DE++E+ ++A V S Y W
Sbjct: 199 VEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFW 236
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 43 IDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIW 80
+++Q+NR DE++E+ ++A V S Y W
Sbjct: 196 VEEQINRFDELAENSTEEVRAKXKENFVISSYYEYQFW 233
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 43 IDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIW 80
+++Q+NR DE++E+ ++A V S Y W
Sbjct: 196 VEEQINRFDELAENSTEEVRAKXKENFVISSYYEYQFW 233
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 19 GEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD 51
G D +NF H +ST R+ +TFI +L+ D
Sbjct: 49 GGDATENFEDHGHSTDARELSKTFIIGELHPDD 81
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 19 GEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD 51
G D +NF H +ST R+ +TFI +L+ D
Sbjct: 49 GGDATENFEDHGHSTDARELSKTFIIGELHPDD 81
>pdb|1XR7|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
pdb|1XR7|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase 3d From
Human Rhinovirus Serotype 16
Length = 460
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 TFIDDQLNRGDEISESLLNAIQASAIS-VIVFSEGYAS 77
TF+ D+L + D+I+ I+AS+I+ I+F Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
>pdb|1TP7|A Chain A, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|B Chain B, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|C Chain C, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
pdb|1TP7|D Chain D, Crystal Structure Of The Rna-Dependent Rna Polymerase From
Human Rhinovirus 16
Length = 460
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 41 TFIDDQLNRGDEISESLLNAIQASAIS-VIVFSEGYAS 77
TF+ D+L + D+I+ I+AS+I+ I+F Y +
Sbjct: 156 TFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGN 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,131,537
Number of Sequences: 62578
Number of extensions: 64790
Number of successful extensions: 190
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 15
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)