Query 044867
Match_columns 81
No_of_seqs 100 out of 1039
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044867.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044867hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03194 putative disease resi 100.0 2.2E-28 4.7E-33 161.2 8.0 79 3-81 19-98 (187)
2 PLN03210 Resistant to P. syrin 99.9 2.9E-24 6.3E-29 169.3 8.2 81 1-81 1-83 (1153)
3 smart00255 TIR Toll - interleu 99.8 3.9E-19 8.4E-24 110.4 5.4 71 10-81 1-72 (140)
4 PF01582 TIR: TIR domain; Int 99.8 6E-20 1.3E-24 115.5 -0.3 69 13-81 1-72 (141)
5 PF13676 TIR_2: TIR domain; PD 99.7 3.7E-19 7.9E-24 106.0 -2.4 67 13-81 1-67 (102)
6 KOG3678 SARM protein (with ste 98.9 1.9E-09 4.2E-14 80.5 5.9 69 7-77 609-678 (832)
7 PF08937 DUF1863: MTH538 TIR-l 98.6 4.1E-08 8.9E-13 61.1 2.7 70 11-81 1-88 (130)
8 PF08357 SEFIR: SEFIR domain; 98.6 1.5E-07 3.3E-12 59.3 5.2 64 12-75 2-70 (150)
9 PF10137 TIR-like: Predicted n 98.1 1.5E-05 3.3E-10 49.9 6.4 60 12-74 1-61 (125)
10 PF13271 DUF4062: Domain of un 96.5 0.014 3E-07 33.7 5.8 66 12-78 1-67 (83)
11 COG4271 Predicted nucleotide-b 95.5 0.066 1.4E-06 36.4 6.0 60 12-75 84-145 (233)
12 PF05014 Nuc_deoxyrib_tr: Nucl 93.6 0.25 5.5E-06 29.6 4.9 51 24-74 13-72 (113)
13 cd00860 ThrRS_anticodon ThrRS 93.0 0.74 1.6E-05 25.8 6.0 60 10-73 1-60 (91)
14 cd00738 HGTP_anticodon HGTP an 91.5 1.1 2.4E-05 25.1 5.6 60 11-74 2-64 (94)
15 PF03129 HGTP_anticodon: Antic 90.0 1.6 3.6E-05 24.8 5.4 44 24-70 15-59 (94)
16 cd00858 GlyRS_anticodon GlyRS 88.9 2.2 4.7E-05 25.8 5.6 62 8-74 24-87 (121)
17 COG0400 Predicted esterase [Ge 84.4 3.6 7.9E-05 27.7 5.2 57 6-63 142-200 (207)
18 COG4916 Uncharacterized protei 84.3 2.1 4.5E-05 30.5 4.1 73 6-81 173-252 (329)
19 cd00861 ProRS_anticodon_short 79.7 8.1 0.00018 21.7 4.9 47 25-74 18-64 (94)
20 TIGR00418 thrS threonyl-tRNA s 78.3 7.6 0.00017 29.4 5.6 63 8-74 468-530 (563)
21 TIGR00334 5S_RNA_mat_M5 ribonu 76.8 4.7 0.0001 26.7 3.6 42 25-67 36-77 (174)
22 cd02426 Pol_gamma_b_Cterm C-te 76.3 2.2 4.7E-05 26.5 1.9 32 24-55 43-78 (128)
23 cd00859 HisRS_anticodon HisRS 75.2 11 0.00024 20.4 5.1 57 12-72 3-59 (91)
24 cd01423 MGS_CPS_I_III Methylgl 72.2 6.2 0.00013 23.6 3.2 60 13-74 3-80 (116)
25 CHL00201 syh histidine-tRNA sy 72.1 14 0.0003 27.3 5.5 61 9-73 324-384 (430)
26 PRK14938 Ser-tRNA(Thr) hydrola 71.0 16 0.00036 27.1 5.6 59 8-70 272-331 (387)
27 cd01424 MGS_CPS_II Methylglyox 69.5 20 0.00044 21.0 6.0 61 12-74 2-76 (110)
28 cd00532 MGS-like MGS-like doma 67.5 23 0.0005 21.0 5.0 60 13-74 2-77 (112)
29 PF03720 UDPG_MGDP_dh_C: UDP-g 67.4 6.7 0.00015 23.2 2.6 54 20-73 12-76 (106)
30 PRK09194 prolyl-tRNA synthetas 66.5 9.8 0.00021 29.1 3.8 48 7-54 465-515 (565)
31 cd02042 ParA ParA and ParB of 66.3 22 0.00048 20.2 6.1 63 13-75 3-73 (104)
32 PRK12325 prolyl-tRNA synthetas 66.2 28 0.0006 25.8 6.0 62 9-74 344-408 (439)
33 PRK00413 thrS threonyl-tRNA sy 66.2 21 0.00045 27.5 5.6 62 9-74 538-599 (638)
34 cd06379 PBP1_iGluR_NMDA_NR1 N- 65.4 26 0.00057 24.7 5.6 50 13-63 157-211 (377)
35 PRK14799 thrS threonyl-tRNA sy 65.0 22 0.00048 27.4 5.4 58 9-70 437-495 (545)
36 COG1658 Small primase-like pro 64.0 17 0.00037 22.8 4.0 54 11-65 30-83 (127)
37 PF11201 DUF2982: Protein of u 63.2 7.3 0.00016 25.3 2.2 27 8-34 123-150 (152)
38 cd06366 PBP1_GABAb_receptor Li 62.9 41 0.00089 23.2 6.1 60 12-72 137-201 (350)
39 cd06342 PBP1_ABC_LIVBP_like Ty 62.6 40 0.00086 22.9 6.0 52 12-64 137-189 (334)
40 cd03364 TOPRIM_DnaG_primases T 62.4 9.9 0.00022 21.1 2.5 40 31-71 36-77 (79)
41 PRK03991 threonyl-tRNA synthet 61.8 31 0.00067 27.0 5.8 58 9-70 498-556 (613)
42 cd06352 PBP1_NPR_GC_like Ligan 61.4 22 0.00048 24.9 4.6 53 12-65 139-195 (389)
43 PLN02530 histidine-tRNA ligase 61.1 31 0.00067 25.9 5.6 60 9-72 400-459 (487)
44 COG1058 CinA Predicted nucleot 60.9 14 0.0003 25.9 3.5 40 27-68 23-65 (255)
45 cd06361 PBP1_GPC6A_like Ligand 60.0 27 0.00059 25.3 5.0 42 8-50 171-212 (403)
46 PRK12305 thrS threonyl-tRNA sy 59.9 31 0.00067 26.2 5.5 58 9-70 475-533 (575)
47 PRK12444 threonyl-tRNA synthet 59.6 32 0.00069 26.7 5.5 63 8-73 539-601 (639)
48 COG0683 LivK ABC-type branched 59.0 54 0.0012 23.2 6.3 63 11-73 149-211 (366)
49 PF10087 DUF2325: Uncharacteri 58.8 33 0.00072 19.8 4.5 47 26-73 11-58 (97)
50 COG0125 Tmk Thymidylate kinase 58.1 28 0.0006 23.4 4.5 33 13-45 4-38 (208)
51 PF09837 DUF2064: Uncharacteri 57.2 43 0.00092 20.5 6.0 50 7-64 7-56 (122)
52 PRK07933 thymidylate kinase; V 57.0 38 0.00083 22.5 5.0 30 14-43 2-33 (213)
53 cd08584 PI-PLCc_GDPD_SF_unchar 56.7 43 0.00092 22.5 5.1 56 12-74 103-158 (192)
54 TIGR00177 molyb_syn molybdenum 56.5 18 0.00038 22.5 3.1 44 26-69 28-72 (144)
55 cd06386 PBP1_NPR_C_like Ligand 56.0 72 0.0016 22.7 6.6 47 27-73 157-204 (387)
56 cd06328 PBP1_SBP_like_2 Peripl 55.5 62 0.0013 22.3 6.0 52 12-64 138-190 (333)
57 PTZ00445 p36-lilke protein; Pr 55.0 30 0.00066 23.8 4.2 49 24-72 28-98 (219)
58 cd06340 PBP1_ABC_ligand_bindin 54.7 54 0.0012 22.7 5.7 61 11-72 145-206 (347)
59 PF03358 FMN_red: NADPH-depend 54.2 48 0.001 20.2 5.5 54 24-78 17-84 (152)
60 PLN02908 threonyl-tRNA synthet 53.7 46 0.001 26.2 5.6 60 10-73 589-648 (686)
61 PRK08661 prolyl-tRNA synthetas 53.4 64 0.0014 24.3 6.1 47 8-54 285-338 (477)
62 cd06370 PBP1_Speract_GC_like L 53.4 27 0.00058 25.0 4.0 27 24-50 150-176 (404)
63 TIGR00789 flhB_rel flhB C-term 53.3 43 0.00092 19.3 4.5 39 25-63 27-72 (82)
64 PF09419 PGP_phosphatase: Mito 53.3 20 0.00044 23.4 3.1 43 33-75 35-87 (168)
65 PF13289 SIR2_2: SIR2-like dom 52.4 48 0.001 19.7 4.7 9 13-21 90-98 (143)
66 PF02310 B12-binding: B12 bind 52.3 44 0.00095 19.4 4.3 42 27-73 17-59 (121)
67 cd06367 PBP1_iGluR_NMDA N-term 51.7 59 0.0013 22.6 5.5 28 13-40 139-166 (362)
68 PF04244 DPRP: Deoxyribodipyri 51.3 43 0.00093 22.8 4.6 67 10-78 62-131 (224)
69 cd06365 PBP1_Pheromone_recepto 51.1 50 0.0011 24.4 5.2 33 19-51 181-213 (469)
70 cd06350 PBP1_GPCR_family_C_lik 50.9 41 0.00088 23.1 4.5 59 13-71 163-225 (348)
71 cd00862 ProRS_anticodon_zinc P 50.8 17 0.00036 24.1 2.5 48 8-55 8-62 (202)
72 cd04885 ACT_ThrD-I Tandem C-te 50.7 22 0.00047 19.1 2.6 30 10-41 37-66 (68)
73 COG0124 HisS Histidyl-tRNA syn 50.5 75 0.0016 23.9 6.0 60 7-70 332-392 (429)
74 TIGR00409 proS_fam_II prolyl-t 50.4 12 0.00026 28.8 1.9 47 9-55 472-521 (568)
75 cd06346 PBP1_ABC_ligand_bindin 50.2 74 0.0016 21.7 5.7 52 12-64 139-191 (312)
76 cd06335 PBP1_ABC_ligand_bindin 50.0 71 0.0015 22.1 5.6 49 11-59 139-188 (347)
77 cd06371 PBP1_sensory_GC_DEF_li 49.9 55 0.0012 23.3 5.2 59 13-71 135-196 (382)
78 PF02337 Gag_p10: Retroviral G 49.6 15 0.00032 21.8 1.8 17 25-41 9-25 (90)
79 PF02230 Abhydrolase_2: Phosph 49.5 52 0.0011 21.4 4.7 51 10-61 155-208 (216)
80 KOG3573 Caspase, apoptotic cys 49.5 12 0.00027 26.1 1.8 27 14-40 231-257 (300)
81 cd06349 PBP1_ABC_ligand_bindin 49.1 65 0.0014 22.1 5.3 52 12-64 137-189 (340)
82 cd05565 PTS_IIB_lactose PTS_II 49.1 43 0.00093 19.9 3.8 43 24-74 14-56 (99)
83 COG2130 Putative NADP-dependen 48.9 57 0.0012 23.9 5.0 52 9-68 195-247 (340)
84 PF13662 Toprim_4: Toprim doma 48.4 13 0.00028 20.7 1.4 34 32-66 40-75 (81)
85 PRK08306 dipicolinate synthase 47.3 34 0.00074 24.0 3.7 45 29-73 16-65 (296)
86 PF03481 SUA5: Putative GTP-bi 46.3 47 0.001 20.1 3.8 53 11-64 68-123 (125)
87 PF05818 TraT: Enterobacterial 46.2 48 0.001 22.7 4.1 38 7-44 18-56 (215)
88 PF00994 MoCF_biosynth: Probab 45.6 29 0.00064 21.3 2.9 44 25-69 17-62 (144)
89 cd04886 ACT_ThrD-II-like C-ter 44.6 44 0.00096 17.0 3.5 33 8-42 40-72 (73)
90 cd00758 MoCF_BD MoCF_BD: molyb 44.5 39 0.00084 20.6 3.3 43 26-68 20-63 (133)
91 PRK11784 tRNA 2-selenouridine 43.9 87 0.0019 22.7 5.4 51 22-72 191-245 (345)
92 PRK13762 tRNA-modifying enzyme 43.7 1E+02 0.0022 22.0 5.7 37 10-46 130-166 (322)
93 cd05008 SIS_GlmS_GlmD_1 SIS (S 43.6 34 0.00074 20.1 2.9 28 13-43 51-78 (126)
94 PF07282 OrfB_Zn_ribbon: Putat 43.5 50 0.0011 17.7 3.3 26 54-80 5-30 (69)
95 PRK08350 hypothetical protein; 43.5 26 0.00057 25.6 2.7 33 8-40 279-311 (341)
96 PF07429 Glyco_transf_56: 4-al 43.4 29 0.00063 25.6 2.9 46 30-77 300-347 (360)
97 PRK15057 UDP-glucose 6-dehydro 43.4 66 0.0014 23.5 4.8 51 20-70 311-366 (388)
98 PF09413 DUF2007: Domain of un 43.2 27 0.00058 18.6 2.2 22 25-46 10-31 (67)
99 COG3613 Nucleoside 2-deoxyribo 43.0 58 0.0013 21.6 4.0 49 25-73 20-78 (172)
100 cd05569 PTS_IIB_fructose PTS_I 43.0 67 0.0015 18.6 4.6 45 26-73 17-63 (96)
101 PF01380 SIS: SIS domain SIS d 42.9 32 0.00068 20.1 2.6 52 13-75 58-109 (131)
102 PLN02734 glycyl-tRNA synthetas 42.7 1.1E+02 0.0024 24.6 6.1 59 8-70 570-629 (684)
103 COG0576 GrpE Molecular chapero 42.5 69 0.0015 21.3 4.4 47 26-76 123-176 (193)
104 cd04795 SIS SIS domain. SIS (S 42.5 41 0.00089 18.2 2.9 10 35-44 46-55 (87)
105 cd03114 ArgK-like The function 42.2 85 0.0018 19.6 5.2 44 27-75 80-124 (148)
106 cd06269 PBP1_glutamate_recepto 42.2 84 0.0018 20.3 4.8 53 13-65 143-195 (298)
107 COG3340 PepE Peptidase E [Amin 42.1 1.2E+02 0.0025 21.1 5.6 56 11-69 34-90 (224)
108 cd05017 SIS_PGI_PMI_1 The memb 41.8 40 0.00086 20.0 3.0 31 10-43 43-75 (119)
109 TIGR00408 proS_fam_I prolyl-tR 41.2 1.1E+02 0.0024 23.0 5.7 64 8-74 280-348 (472)
110 PF09673 TrbC_Ftype: Type-F co 41.1 80 0.0017 19.0 5.0 38 13-55 2-39 (113)
111 TIGR00389 glyS_dimeric glycyl- 40.8 1.3E+02 0.0027 23.5 6.1 61 9-73 456-517 (551)
112 PRK03767 NAD(P)H:quinone oxido 40.8 1E+02 0.0022 20.0 5.8 51 24-78 16-83 (200)
113 PF05985 EutC: Ethanolamine am 40.6 38 0.00082 23.6 3.0 45 24-73 123-172 (237)
114 smart00852 MoCF_biosynth Proba 40.2 41 0.00089 20.4 2.9 41 26-67 19-61 (135)
115 cd06348 PBP1_ABC_ligand_bindin 39.7 1.2E+02 0.0025 20.8 5.4 54 12-66 138-193 (344)
116 PF00875 DNA_photolyase: DNA p 39.5 69 0.0015 20.0 4.0 45 27-76 55-99 (165)
117 PF14528 LAGLIDADG_3: LAGLIDAD 39.4 44 0.00095 18.1 2.7 31 12-44 21-51 (77)
118 PLN02379 pfkB-type carbohydrat 39.1 92 0.002 22.4 4.9 48 13-62 181-229 (367)
119 cd05710 SIS_1 A subgroup of th 38.9 46 0.001 19.8 3.0 30 11-43 48-79 (120)
120 cd00886 MogA_MoaB MogA_MoaB fa 38.9 42 0.00091 21.0 2.9 40 26-66 21-64 (152)
121 COG1763 MobB Molybdopterin-gua 38.8 39 0.00085 21.9 2.7 30 14-44 7-36 (161)
122 PF07283 TrbH: Conjugal transf 38.8 63 0.0014 20.1 3.6 23 24-46 35-57 (121)
123 cd03411 Ferrochelatase_N Ferro 38.6 1E+02 0.0022 19.4 4.6 52 25-78 72-128 (159)
124 PF12146 Hydrolase_4: Putative 38.6 51 0.0011 18.4 2.9 36 9-45 15-50 (79)
125 PRK14077 pnk inorganic polypho 38.4 54 0.0012 23.1 3.6 34 13-46 13-46 (287)
126 PRK13883 conjugal transfer pro 38.2 62 0.0013 21.0 3.5 33 11-46 53-85 (151)
127 COG3980 spsG Spore coat polysa 38.1 1.6E+02 0.0034 21.5 6.0 55 9-66 157-211 (318)
128 cd06327 PBP1_SBP_like_1 Peripl 38.1 1.2E+02 0.0025 20.8 5.2 48 12-59 137-185 (334)
129 PRK12435 ferrochelatase; Provi 38.1 1.4E+02 0.0031 21.2 5.7 52 25-78 61-119 (311)
130 cd06358 PBP1_NHase Type I peri 37.5 1.1E+02 0.0023 21.0 4.9 54 12-65 134-187 (333)
131 PF07859 Abhydrolase_3: alpha/ 37.2 46 0.00099 21.1 2.9 35 10-44 166-200 (211)
132 cd05014 SIS_Kpsf KpsF-like pro 37.2 50 0.0011 19.4 2.9 28 13-43 52-79 (128)
133 TIGR03566 FMN_reduc_MsuE FMN r 37.0 57 0.0012 20.7 3.3 23 55-78 60-82 (174)
134 PRK10569 NAD(P)H-dependent FMN 36.6 1.2E+02 0.0027 19.8 5.8 53 25-78 18-80 (191)
135 PF13899 Thioredoxin_7: Thiore 36.5 76 0.0016 17.3 3.5 20 53-72 6-25 (82)
136 PRK05465 ethanolamine ammonia- 35.6 52 0.0011 23.2 3.1 45 24-73 130-179 (260)
137 PF00585 Thr_dehydrat_C: C-ter 35.6 76 0.0016 18.3 3.4 33 8-42 47-79 (91)
138 PF00128 Alpha-amylase: Alpha 35.5 37 0.0008 22.6 2.3 20 26-45 53-72 (316)
139 cd00885 cinA Competence-damage 35.2 71 0.0015 20.6 3.5 41 25-67 19-62 (170)
140 PF00762 Ferrochelatase: Ferro 35.2 88 0.0019 22.3 4.3 52 25-78 73-129 (316)
141 PLN02924 thymidylate kinase 35.1 1.4E+02 0.003 20.0 5.6 30 12-41 16-47 (220)
142 PF10105 DUF2344: Uncharacteri 34.7 47 0.001 21.9 2.6 28 13-46 13-40 (187)
143 TIGR03127 RuMP_HxlB 6-phospho 34.4 55 0.0012 20.7 2.9 28 13-43 77-104 (179)
144 cd04882 ACT_Bt0572_2 C-termina 34.1 34 0.00074 17.4 1.6 16 27-42 50-65 (65)
145 cd06364 PBP1_CaSR Ligand-bindi 33.9 1.3E+02 0.0028 22.7 5.1 24 23-46 200-223 (510)
146 COG0289 DapB Dihydrodipicolina 33.8 1.1E+02 0.0024 21.6 4.5 60 8-76 67-127 (266)
147 cd05013 SIS_RpiR RpiR-like pro 33.8 74 0.0016 18.5 3.3 30 11-43 63-92 (139)
148 TIGR03026 NDP-sugDHase nucleot 33.6 92 0.002 22.6 4.3 53 21-73 329-386 (411)
149 smart00851 MGS MGS-like domain 33.6 92 0.002 17.5 4.4 40 32-74 24-64 (90)
150 cd05564 PTS_IIB_chitobiose_lic 33.6 95 0.0021 18.0 3.6 21 25-45 14-34 (96)
151 PF02146 SIR2: Sir2 family; I 33.5 41 0.0009 21.5 2.2 29 41-72 144-172 (178)
152 smart00646 Ami_3 Ami_3. 33.5 59 0.0013 18.9 2.8 26 37-62 26-54 (113)
153 PF00107 ADH_zinc_N: Zinc-bind 33.5 1E+02 0.0022 17.9 3.9 53 11-70 35-88 (130)
154 TIGR00441 gmhA phosphoheptose 33.5 64 0.0014 20.1 3.1 32 9-43 78-111 (154)
155 PF02142 MGS: MGS-like domain 33.4 97 0.0021 17.7 4.3 43 32-74 24-69 (95)
156 PRK12420 histidyl-tRNA synthet 33.3 1.9E+02 0.0042 21.1 6.3 58 9-72 337-395 (423)
157 PRK14140 heat shock protein Gr 33.3 86 0.0019 21.0 3.7 47 26-76 123-176 (191)
158 PF01094 ANF_receptor: Recepto 33.1 58 0.0013 21.9 3.0 60 13-72 124-188 (348)
159 PF13155 Toprim_2: Toprim-like 33.1 56 0.0012 18.3 2.6 38 27-65 35-75 (96)
160 PRK13109 flhB flagellar biosyn 32.9 99 0.0022 22.6 4.3 39 25-63 298-344 (358)
161 cd06343 PBP1_ABC_ligand_bindin 32.8 1.5E+02 0.0033 20.5 5.1 45 13-57 147-192 (362)
162 COG2266 GTP:adenosylcobinamide 32.4 65 0.0014 21.5 3.0 27 49-75 25-52 (177)
163 PF00113 Enolase_C: Enolase, C 32.4 47 0.001 23.7 2.5 33 9-41 227-259 (295)
164 cd06374 PBP1_mGluR_groupI Liga 32.4 1.2E+02 0.0027 22.2 4.8 46 17-63 193-241 (472)
165 PF14792 DNA_pol_B_palm: DNA p 32.3 57 0.0012 19.6 2.6 31 10-40 42-76 (112)
166 PF01113 DapB_N: Dihydrodipico 32.3 1.2E+02 0.0025 18.3 5.0 57 10-75 67-124 (124)
167 PF02739 5_3_exonuc_N: 5'-3' e 32.3 87 0.0019 20.2 3.6 46 28-74 89-134 (169)
168 PRK14151 heat shock protein Gr 32.1 1.1E+02 0.0025 20.1 4.1 46 27-76 108-160 (176)
169 PTZ00345 glycerol-3-phosphate 32.1 50 0.0011 24.1 2.7 64 10-76 41-106 (365)
170 cd06338 PBP1_ABC_ligand_bindin 32.0 1.7E+02 0.0036 20.0 6.0 51 13-64 144-195 (345)
171 PF04343 DUF488: Protein of un 31.9 1.2E+02 0.0025 18.2 4.5 39 27-66 2-45 (122)
172 PRK06298 type III secretion sy 31.9 1.1E+02 0.0024 22.4 4.4 39 25-63 290-336 (356)
173 cd01983 Fer4_NifH The Fer4_Nif 31.8 86 0.0019 16.6 4.9 53 24-76 13-71 (99)
174 PRK10824 glutaredoxin-4; Provi 31.7 78 0.0017 19.3 3.1 9 35-43 13-21 (115)
175 PRK12773 flhB flagellar biosyn 31.5 1.1E+02 0.0024 24.4 4.5 40 24-63 587-634 (646)
176 cd06578 HemD Uroporphyrinogen- 31.5 1E+02 0.0022 19.8 3.9 47 28-75 135-184 (239)
177 PF13727 CoA_binding_3: CoA-bi 31.5 68 0.0015 19.5 2.9 17 28-44 131-148 (175)
178 cd06363 PBP1_Taste_receptor Li 31.4 1.1E+02 0.0024 21.8 4.4 34 13-46 179-212 (410)
179 cd03413 CbiK_C Anaerobic cobal 31.4 1.2E+02 0.0025 18.0 5.3 26 13-38 4-29 (103)
180 PF02602 HEM4: Uroporphyrinoge 31.3 52 0.0011 21.4 2.5 44 28-72 130-175 (231)
181 COG0276 HemH Protoheme ferro-l 31.3 1.8E+02 0.0038 21.1 5.3 51 26-78 74-131 (320)
182 PF03045 DAN: DAN domain; Int 31.1 38 0.00082 20.8 1.7 25 56-81 6-30 (121)
183 COG2257 Uncharacterized homolo 31.0 88 0.0019 18.7 3.1 39 25-63 32-77 (92)
184 PRK08155 acetolactate synthase 30.8 1.9E+02 0.0041 21.9 5.7 42 25-70 14-56 (564)
185 COG4567 Response regulator con 30.8 47 0.001 22.1 2.1 21 24-44 19-39 (182)
186 KOG3062 RNA polymerase II elon 30.8 1E+02 0.0022 21.9 3.8 19 17-38 11-29 (281)
187 PRK14158 heat shock protein Gr 30.8 1.7E+02 0.0036 19.7 4.8 47 27-76 126-179 (194)
188 PRK14161 heat shock protein Gr 30.7 1.6E+02 0.0035 19.4 4.8 47 27-76 108-161 (178)
189 PRK15404 leucine ABC transport 30.6 2E+02 0.0043 20.4 5.7 53 13-66 164-217 (369)
190 PF05636 HIGH_NTase1: HIGH Nuc 30.5 50 0.0011 24.4 2.5 18 61-78 27-44 (388)
191 cd06375 PBP1_mGluR_groupII Lig 30.5 1.3E+02 0.0028 22.2 4.6 35 13-47 177-211 (458)
192 PF01990 ATP-synt_F: ATP synth 30.3 39 0.00085 19.5 1.6 37 25-63 29-66 (95)
193 PF02776 TPP_enzyme_N: Thiamin 30.0 1.2E+02 0.0026 19.1 3.9 41 26-70 3-44 (172)
194 PRK13937 phosphoheptose isomer 29.8 79 0.0017 20.5 3.1 30 11-43 107-138 (188)
195 cd04908 ACT_Bt0572_1 N-termina 29.8 50 0.0011 17.4 1.9 16 28-43 51-66 (66)
196 cd05006 SIS_GmhA Phosphoheptos 29.7 75 0.0016 20.1 3.0 32 9-43 100-133 (177)
197 TIGR00853 pts-lac PTS system, 29.6 1.2E+02 0.0026 17.6 3.7 21 24-44 17-37 (95)
198 PF01507 PAPS_reduct: Phosphoa 29.6 78 0.0017 19.4 3.0 32 12-45 1-33 (174)
199 PF13840 ACT_7: ACT domain ; P 29.6 50 0.0011 17.7 1.8 20 24-43 21-40 (65)
200 TIGR03646 YtoQ_fam YtoQ family 29.6 45 0.00097 21.4 1.8 22 56-77 68-89 (144)
201 PF00258 Flavodoxin_1: Flavodo 29.5 1.2E+02 0.0026 18.1 3.8 44 24-72 11-54 (143)
202 cd06547 GH85_ENGase Endo-beta- 29.5 1.8E+02 0.0039 21.0 5.1 60 13-75 176-244 (339)
203 PF13401 AAA_22: AAA domain; P 29.5 96 0.0021 17.9 3.3 48 25-73 74-124 (131)
204 TIGR02867 spore_II_P stage II 29.4 55 0.0012 21.9 2.3 41 25-65 34-81 (196)
205 PRK13976 thymidylate kinase; P 29.4 1.4E+02 0.003 19.8 4.3 31 14-44 2-36 (209)
206 PRK14976 5'-3' exonuclease; Pr 29.4 1E+02 0.0023 21.6 3.8 69 6-75 66-139 (281)
207 TIGR00328 flhB flagellar biosy 29.3 1.4E+02 0.0029 21.8 4.5 39 25-63 289-335 (347)
208 PF01520 Amidase_3: N-acetylmu 29.2 1.5E+02 0.0032 18.4 5.4 47 24-70 27-74 (175)
209 PF00009 GTP_EFTU: Elongation 29.2 57 0.0012 20.7 2.3 26 49-74 78-104 (188)
210 PRK06052 5-methyltetrahydropte 29.1 53 0.0012 24.1 2.4 67 11-80 245-320 (344)
211 PRK10076 pyruvate formate lyas 29.0 1.8E+02 0.0039 19.4 5.1 23 24-46 53-75 (213)
212 PRK02947 hypothetical protein; 29.0 74 0.0016 21.7 3.0 32 10-44 106-139 (246)
213 PRK00414 gmhA phosphoheptose i 28.9 84 0.0018 20.5 3.1 54 9-73 110-165 (192)
214 cd01856 YlqF YlqF. Proteins o 28.8 58 0.0013 20.4 2.3 18 55-72 11-28 (171)
215 cd03146 GAT1_Peptidase_E Type 28.8 1.7E+02 0.0037 19.3 4.6 31 11-42 33-64 (212)
216 cd00032 CASc Caspase, interleu 28.7 48 0.001 22.4 2.0 31 8-38 161-200 (243)
217 cd02067 B12-binding B12 bindin 28.6 1.3E+02 0.0028 17.6 5.2 41 29-73 18-58 (119)
218 KOG4132 Uroporphyrinogen III s 28.6 1.2E+02 0.0025 21.4 3.8 47 28-77 146-199 (260)
219 PRK00536 speE spermidine synth 28.5 1.6E+02 0.0035 20.5 4.6 53 8-63 137-190 (262)
220 cd00419 Ferrochelatase_C Ferro 28.4 1.5E+02 0.0033 18.3 4.4 54 25-78 45-104 (135)
221 TIGR00442 hisS histidyl-tRNA s 28.4 2.2E+02 0.0048 20.4 5.5 58 9-70 321-379 (397)
222 PF11071 DUF2872: Protein of u 28.1 49 0.0011 21.2 1.8 21 57-77 66-86 (141)
223 COG0529 CysC Adenylylsulfate k 28.0 50 0.0011 22.3 1.9 20 24-43 37-56 (197)
224 TIGR02742 TrbC_Ftype type-F co 27.9 1.6E+02 0.0034 18.4 5.0 28 13-43 3-30 (130)
225 cd06385 PBP1_NPR_A Ligand-bind 27.9 1.3E+02 0.0028 21.4 4.2 44 26-69 164-208 (405)
226 COG5309 Exo-beta-1,3-glucanase 27.9 89 0.0019 22.5 3.2 33 25-59 87-119 (305)
227 cd04914 ACT_AKi-DapG-BS_1 ACT 27.7 1.1E+02 0.0023 16.4 3.0 20 24-43 13-32 (67)
228 PLN02449 ferrochelatase 27.7 2.1E+02 0.0046 22.0 5.4 52 25-78 164-220 (485)
229 TIGR00288 conserved hypothetic 27.6 1.1E+02 0.0024 19.9 3.4 31 9-43 104-134 (160)
230 PHA02558 uvsW UvsW helicase; P 27.6 83 0.0018 23.6 3.2 45 10-54 47-93 (501)
231 PRK14139 heat shock protein Gr 27.5 1.2E+02 0.0027 20.1 3.7 46 27-76 117-168 (185)
232 cd00008 53EXOc 5'-3' exonuclea 27.5 1.1E+02 0.0024 20.7 3.7 69 6-75 61-134 (240)
233 PF03698 UPF0180: Uncharacteri 27.5 48 0.001 19.2 1.6 16 27-42 10-25 (80)
234 PRK14495 putative molybdopteri 27.5 55 0.0012 24.9 2.3 29 14-43 6-34 (452)
235 PRK11543 gutQ D-arabinose 5-ph 27.4 76 0.0017 22.0 2.9 31 10-43 89-121 (321)
236 TIGR01404 FlhB_rel_III type II 27.3 1.5E+02 0.0033 21.4 4.5 39 25-63 288-334 (342)
237 PRK15467 ethanolamine utilizat 27.2 88 0.0019 19.4 2.9 23 52-74 53-75 (158)
238 COG0512 PabA Anthranilate/para 27.2 1.7E+02 0.0038 19.7 4.4 42 23-73 10-53 (191)
239 PRK12772 bifunctional flagella 27.2 1.4E+02 0.0029 23.5 4.4 39 25-63 552-598 (609)
240 PF09677 TrbI_Ftype: Type-F co 27.1 1.5E+02 0.0033 18.0 4.2 39 25-63 65-108 (111)
241 PF11814 DUF3335: Peptidase_C3 27.0 1.8E+02 0.0038 19.9 4.4 37 31-73 102-138 (207)
242 PRK12721 secretion system appa 27.0 1.6E+02 0.0035 21.5 4.5 39 25-63 289-335 (349)
243 TIGR00176 mobB molybdopterin-g 27.0 65 0.0014 20.3 2.3 29 14-43 4-32 (155)
244 cd00120 MADS MADS: MCM1, Agamo 26.8 80 0.0017 17.0 2.3 20 61-80 37-56 (59)
245 PRK14164 heat shock protein Gr 26.8 1.4E+02 0.003 20.4 3.9 48 25-76 149-201 (218)
246 PRK13835 conjugal transfer pro 26.8 88 0.0019 20.2 2.8 23 24-46 68-90 (145)
247 PRK08156 type III secretion sy 26.8 1.3E+02 0.0027 22.2 3.9 40 24-63 283-330 (361)
248 cd06390 PBP1_iGluR_AMPA_GluR1 26.7 1.9E+02 0.0042 20.7 4.9 58 13-72 120-180 (364)
249 smart00490 HELICc helicase sup 26.7 1E+02 0.0022 15.8 3.2 15 32-46 31-45 (82)
250 PRK03094 hypothetical protein; 26.7 52 0.0011 19.1 1.6 16 27-42 10-25 (80)
251 PF07454 SpoIIP: Stage II spor 26.6 95 0.0021 21.8 3.2 40 7-46 70-132 (268)
252 PLN02972 Histidyl-tRNA synthet 26.6 2.4E+02 0.0052 23.0 5.7 59 9-72 667-725 (763)
253 COG0105 Ndk Nucleoside diphosp 26.5 1.3E+02 0.0029 19.2 3.5 52 22-73 14-78 (135)
254 PF02878 PGM_PMM_I: Phosphoglu 26.5 1.6E+02 0.0034 17.9 5.2 59 9-72 39-99 (137)
255 PRK11633 cell division protein 26.4 56 0.0012 22.4 2.0 25 16-44 156-180 (226)
256 cd00287 ribokinase_pfkB_like r 26.3 1.7E+02 0.0036 18.1 5.0 21 26-46 72-92 (196)
257 PF04309 G3P_antiterm: Glycero 26.2 1.2E+02 0.0026 20.0 3.5 37 10-50 20-56 (175)
258 TIGR00434 cysH phosophoadenyly 26.1 1.9E+02 0.0042 18.8 5.6 57 11-74 14-75 (212)
259 PRK03673 hypothetical protein; 26.1 98 0.0021 23.0 3.3 40 27-68 23-65 (396)
260 TIGR02826 RNR_activ_nrdG3 anae 26.0 1.8E+02 0.0038 18.3 5.4 32 14-45 64-95 (147)
261 PRK10325 heat shock protein Gr 26.0 1.3E+02 0.0027 20.2 3.6 46 27-76 127-179 (197)
262 smart00642 Aamy Alpha-amylase 25.9 70 0.0015 20.5 2.3 20 26-45 71-90 (166)
263 PRK13973 thymidylate kinase; P 25.7 2E+02 0.0043 18.8 4.9 31 13-43 4-36 (213)
264 cd04918 ACT_AK1-AT_2 ACT domai 25.6 81 0.0018 16.6 2.2 20 25-44 15-34 (65)
265 PF02037 SAP: SAP domain; Int 25.6 47 0.001 15.7 1.1 14 27-40 6-19 (35)
266 PF13458 Peripla_BP_6: Peripla 25.6 1.4E+02 0.0031 20.1 3.9 54 11-64 136-189 (343)
267 PRK05702 flhB flagellar biosyn 25.5 1.7E+02 0.0038 21.4 4.5 39 25-63 296-342 (359)
268 smart00115 CASc Caspase, inter 25.5 71 0.0015 21.6 2.4 31 8-38 157-196 (241)
269 PRK14141 heat shock protein Gr 25.5 1.4E+02 0.0031 20.2 3.8 45 28-76 125-176 (209)
270 PRK06893 DNA replication initi 25.4 1.9E+02 0.004 19.2 4.4 64 13-80 71-139 (229)
271 PRK14148 heat shock protein Gr 25.3 1.5E+02 0.0033 19.9 3.8 47 26-76 126-179 (195)
272 PRK12815 carB carbamoyl phosph 25.1 1.7E+02 0.0037 24.4 4.8 62 10-74 937-1013(1068)
273 COG2984 ABC-type uncharacteriz 25.0 1.4E+02 0.0029 21.8 3.8 57 14-73 38-98 (322)
274 PRK12468 flhB flagellar biosyn 25.0 1.7E+02 0.0036 21.7 4.4 39 25-63 296-342 (386)
275 PLN02735 carbamoyl-phosphate s 24.9 1.7E+02 0.0038 24.6 4.8 62 10-74 972-1048(1102)
276 PLN02837 threonine-tRNA ligase 24.9 2.6E+02 0.0057 21.8 5.6 57 9-70 515-572 (614)
277 cd01408 SIRT1 SIRT1: Eukaryoti 24.9 90 0.0019 21.2 2.8 31 41-73 155-185 (235)
278 PF08444 Gly_acyl_tr_C: Aralky 24.8 57 0.0012 19.3 1.6 22 24-45 38-59 (89)
279 COG0761 lytB 4-Hydroxy-3-methy 24.6 1.3E+02 0.0028 21.7 3.5 53 27-79 173-228 (294)
280 PRK08105 flavodoxin; Provision 24.6 94 0.002 19.4 2.7 21 24-44 16-36 (149)
281 PRK14154 heat shock protein Gr 24.5 1.8E+02 0.004 19.7 4.2 47 27-76 140-193 (208)
282 PRK02645 ppnK inorganic polyph 24.5 1.3E+02 0.0029 21.2 3.7 22 24-45 18-39 (305)
283 cd01422 MGS Methylglyoxal synt 24.4 1.7E+02 0.0037 17.5 4.3 20 55-74 60-79 (115)
284 cd06373 PBP1_NPR_like Ligand b 24.4 2.5E+02 0.0055 19.8 5.1 43 26-69 162-207 (396)
285 COG4868 Uncharacterized protei 24.3 1.2E+02 0.0026 22.7 3.4 48 25-74 120-177 (493)
286 PF08414 NADPH_Ox: Respiratory 24.3 52 0.0011 19.9 1.4 17 24-40 60-77 (100)
287 PF06135 DUF965: Bacterial pro 24.3 54 0.0012 19.0 1.3 29 24-52 18-48 (79)
288 PRK13936 phosphoheptose isomer 24.3 1E+02 0.0022 20.2 2.9 31 10-43 111-143 (197)
289 PRK14150 heat shock protein Gr 24.3 1.3E+02 0.0029 20.0 3.4 46 27-76 126-178 (193)
290 PRK05294 carB carbamoyl phosph 24.2 1.6E+02 0.0035 24.5 4.5 61 11-74 938-1013(1066)
291 cd01080 NAD_bind_m-THF_DH_Cycl 24.2 1.9E+02 0.004 18.7 4.1 38 30-73 60-97 (168)
292 TIGR00646 MG010 DNA primase-re 24.1 1.8E+02 0.0039 20.0 4.1 48 12-59 156-203 (218)
293 cd05005 SIS_PHI Hexulose-6-pho 24.0 1E+02 0.0022 19.5 2.8 28 13-43 80-107 (179)
294 cd02696 MurNAc-LAA N-acetylmur 23.9 1.9E+02 0.0041 18.0 5.4 22 24-45 28-49 (172)
295 COG4635 HemG Flavodoxin [Energ 23.9 1E+02 0.0022 20.4 2.8 31 13-43 3-34 (175)
296 PF09314 DUF1972: Domain of un 23.8 79 0.0017 20.9 2.3 18 24-41 20-37 (185)
297 PRK00037 hisS histidyl-tRNA sy 23.8 2.8E+02 0.0062 19.9 5.5 57 10-70 318-375 (412)
298 cd01989 STK_N The N-terminal d 23.7 1.7E+02 0.0037 17.3 4.4 41 32-74 72-112 (146)
299 PRK14146 heat shock protein Gr 23.6 1.3E+02 0.0029 20.4 3.4 46 27-76 141-193 (215)
300 cd05009 SIS_GlmS_GlmD_2 SIS (S 23.6 1.2E+02 0.0026 18.2 3.0 28 13-42 66-93 (153)
301 cd04932 ACT_AKiii-LysC-EC_1 AC 23.6 1.3E+02 0.0029 16.5 2.9 20 24-43 15-34 (75)
302 PRK05234 mgsA methylglyoxal sy 23.6 2E+02 0.0043 18.1 5.4 60 10-74 4-84 (142)
303 COG1540 Uncharacterized protei 23.4 66 0.0014 22.6 1.9 19 24-42 231-249 (252)
304 PRK01215 competence damage-ind 23.4 1.2E+02 0.0025 21.1 3.2 42 25-68 23-67 (264)
305 PRK04173 glycyl-tRNA synthetas 23.3 3.3E+02 0.007 20.5 5.7 62 8-74 361-423 (456)
306 PRK14143 heat shock protein Gr 23.3 1.9E+02 0.004 20.1 4.1 47 26-76 154-207 (238)
307 PF12965 DUF3854: Domain of un 23.2 1.9E+02 0.0042 17.8 4.8 12 29-40 93-104 (130)
308 PRK14491 putative bifunctional 23.2 67 0.0014 25.0 2.1 29 14-43 15-43 (597)
309 PF09426 Nyv1_N: Vacuolar R-SN 23.0 1.6E+02 0.0035 18.9 3.4 33 7-39 81-113 (141)
310 PF00319 SRF-TF: SRF-type tran 23.0 59 0.0013 17.1 1.3 14 61-74 30-43 (51)
311 TIGR02057 PAPS_reductase phosp 22.9 1.8E+02 0.004 19.5 4.0 34 10-45 25-60 (226)
312 PF09153 DUF1938: Domain of un 22.9 64 0.0014 19.0 1.5 18 28-45 42-59 (86)
313 PRK14147 heat shock protein Gr 22.9 1.7E+02 0.0036 19.2 3.6 46 27-76 103-155 (172)
314 PRK01189 V-type ATP synthase s 22.8 76 0.0016 19.0 1.9 39 26-66 33-72 (104)
315 PRK05752 uroporphyrinogen-III 22.6 2.4E+02 0.0053 18.9 4.6 44 28-71 143-188 (255)
316 PRK14155 heat shock protein Gr 22.5 1.6E+02 0.0036 19.9 3.7 47 27-76 103-156 (208)
317 PRK11064 wecC UDP-N-acetyl-D-m 22.4 1.5E+02 0.0033 21.7 3.8 58 16-73 329-396 (415)
318 COG3439 Uncharacterized conser 22.4 91 0.002 19.7 2.3 20 25-44 23-42 (137)
319 cd01409 SIRT4 SIRT4: Eukaryoti 22.3 96 0.0021 21.4 2.6 30 41-72 184-213 (260)
320 PF02844 GARS_N: Phosphoribosy 22.3 60 0.0013 19.5 1.4 20 25-44 73-92 (100)
321 COG1751 Uncharacterized conser 22.2 68 0.0015 21.3 1.7 28 18-46 64-91 (186)
322 PF03479 DUF296: Domain of unk 22.0 47 0.001 20.1 0.9 20 47-66 8-27 (120)
323 PF10281 Ish1: Putative stress 21.9 56 0.0012 15.7 1.0 14 27-40 6-19 (38)
324 PRK14157 heat shock protein Gr 21.9 1.6E+02 0.0035 20.3 3.5 48 25-76 155-209 (227)
325 PF01656 CbiA: CobQ/CobB/MinD/ 21.8 2.1E+02 0.0045 17.7 4.8 44 27-74 83-127 (195)
326 TIGR00200 cinA_nterm competenc 21.6 1.1E+02 0.0023 22.8 2.8 41 26-68 21-64 (413)
327 PRK10646 ADP-binding protein; 21.6 90 0.002 20.0 2.2 58 14-76 6-64 (153)
328 COG1015 DeoB Phosphopentomutas 21.6 2.3E+02 0.0049 21.3 4.4 52 24-75 109-161 (397)
329 PRK05473 hypothetical protein; 21.6 61 0.0013 19.1 1.2 18 24-41 21-38 (86)
330 cd04919 ACT_AK-Hom3_2 ACT doma 21.4 1.1E+02 0.0024 15.6 2.3 20 24-43 15-34 (66)
331 cd00138 PLDc Phospholipase D. 21.3 1E+02 0.0022 19.0 2.4 39 25-63 21-65 (176)
332 PF08970 Sda: Sporulation inhi 21.3 68 0.0015 16.7 1.3 17 24-40 23-39 (46)
333 PRK14153 heat shock protein Gr 21.3 1.8E+02 0.0039 19.5 3.6 47 26-76 119-172 (194)
334 cd04893 ACT_GcvR_1 ACT domains 21.2 1.4E+02 0.003 16.3 2.7 27 14-41 3-29 (77)
335 PF13812 PPR_3: Pentatricopept 21.1 59 0.0013 14.1 1.0 17 25-41 18-34 (34)
336 cd01410 SIRT7 SIRT7: Eukaryoti 21.1 1.1E+02 0.0023 20.4 2.5 19 54-72 146-164 (206)
337 PRK09189 uroporphyrinogen-III 21.1 1.9E+02 0.004 19.2 3.7 45 29-73 132-179 (240)
338 PF01316 Arg_repressor: Argini 21.0 58 0.0012 18.2 1.0 14 28-41 23-36 (70)
339 cd06356 PBP1_Amide_Urea_BP_lik 21.0 2.9E+02 0.0063 19.0 5.3 58 11-69 133-193 (334)
340 PRK02797 4-alpha-L-fucosyltran 20.9 88 0.0019 22.8 2.2 45 31-77 262-308 (322)
341 TIGR02884 spore_pdaA delta-lac 20.8 2.7E+02 0.0058 18.5 4.6 54 10-68 36-92 (224)
342 PRK00668 ndk mulitfunctional n 20.7 1.7E+02 0.0037 18.0 3.3 49 26-74 17-78 (134)
343 TIGR00106 uncharacterized prot 20.7 1.9E+02 0.0042 17.0 3.3 38 24-64 18-58 (97)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 20.6 2E+02 0.0044 17.2 3.6 44 29-73 4-51 (141)
345 cd00446 GrpE GrpE is the adeni 20.6 2.2E+02 0.0048 17.5 3.8 48 25-76 70-124 (137)
346 TIGR02690 resist_ArsH arsenica 20.6 1.6E+02 0.0034 20.0 3.3 53 25-78 44-104 (219)
347 PRK11460 putative hydrolase; P 20.6 2.7E+02 0.0058 18.4 4.9 33 9-41 147-181 (232)
348 TIGR03567 FMN_reduc_SsuE FMN r 20.6 1.6E+02 0.0035 18.6 3.2 53 25-78 17-79 (171)
349 PRK00698 tmk thymidylate kinas 20.5 2.3E+02 0.0051 17.8 4.4 31 13-43 4-36 (205)
350 cd04869 ACT_GcvR_2 ACT domains 20.5 1.5E+02 0.0032 15.8 2.7 25 16-41 3-27 (81)
351 TIGR03596 GTPase_YlqF ribosome 20.3 1.3E+02 0.0029 20.6 3.0 47 27-74 12-58 (276)
352 cd04922 ACT_AKi-HSDH-ThrA_2 AC 20.3 1.2E+02 0.0026 15.3 2.2 21 24-44 15-35 (66)
353 PF01408 GFO_IDH_MocA: Oxidore 20.2 1.9E+02 0.0041 16.5 3.6 42 29-70 77-118 (120)
354 PRK09108 type III secretion sy 20.1 2.7E+02 0.0059 20.3 4.6 39 25-63 291-336 (353)
355 PRK14163 heat shock protein Gr 20.1 1.9E+02 0.004 19.8 3.5 47 26-76 119-172 (214)
356 PRK02228 V-type ATP synthase s 20.1 1.1E+02 0.0023 18.0 2.1 40 25-66 31-71 (100)
357 COG1148 HdrA Heterodisulfide r 20.1 3.2E+02 0.0069 21.7 5.1 58 12-74 4-65 (622)
No 1
>PLN03194 putative disease resistance protein; Provisional
Probab=99.95 E-value=2.2e-28 Score=161.21 Aligned_cols=79 Identities=35% Similarity=0.666 Sum_probs=76.2
Q ss_pred CCCCCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 3 SSYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 3 ~~s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
|||+...+|||||||+++|++..|+++|+.+|+++||++|+|.. +++|+.|.+.|.+||++|+++|+||||+|+.|.||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 45678999999999999999999999999999999999999998 99999999999999999999999999999999999
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.9e-24 Score=169.33 Aligned_cols=81 Identities=48% Similarity=0.738 Sum_probs=77.8
Q ss_pred CCCC--CCCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 1 MASS--YRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 1 ~~~~--s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
||+| |++.++|||||||+++|+++.|++||+.+|.++||++|.|+++++|+.+.+++.+||++|+++|+|+|++|+.|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 6776 46899999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCC
Q 044867 79 IWC 81 (81)
Q Consensus 79 ~wC 81 (81)
.||
T Consensus 81 ~wc 83 (1153)
T PLN03210 81 SWC 83 (1153)
T ss_pred hHH
Confidence 999
No 3
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.78 E-value=3.9e-19 Score=110.39 Aligned_cols=71 Identities=44% Similarity=0.764 Sum_probs=61.0
Q ss_pred cccEEEecee-ccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 10 KYDVFVSFRG-EDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 10 ~~dVFISy~~-~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
+|||||||++ ++....|+.+|...|...|+.+|.|.....|.. ..+|.++|++|+++|+|+||+|+.|+||
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~-~~~i~~~i~~s~~~i~vlS~~~~~S~w~ 72 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGD-LEEIDEAIEKSRIAIVVLSPNYAESEWC 72 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccch-HHHHHHHHHHCcEEEEEECcccccChhH
Confidence 5899999999 344468999999999999999999976333333 3399999999999999999999999998
No 4
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.76 E-value=6e-20 Score=115.49 Aligned_cols=69 Identities=35% Similarity=0.687 Sum_probs=62.8
Q ss_pred EEEeceeccCcccHHHHHHHHHhcC--CceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
|||||++.+.+..|+.+|.++|+++ |+++|++++ +.+|..+.++|.++|++|+++|+|+|++|+.|.||
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc 72 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWC 72 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccch
Confidence 8999999433468999999999999 999999998 99999999999999999999999999999999998
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.70 E-value=3.7e-19 Score=106.02 Aligned_cols=67 Identities=31% Similarity=0.638 Sum_probs=59.3
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
|||||++.| ..++..|...|++.|+++|+|+++.+|+.+.+.|.++|++|+.+|+++|++|.+|+||
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~ 67 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWC 67 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHH
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHH
Confidence 899999999 4699999999999999999997689999999999999999999999999999999998
No 6
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.94 E-value=1.9e-09 Score=80.46 Aligned_cols=69 Identities=29% Similarity=0.420 Sum_probs=61.3
Q ss_pred CCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCc
Q 044867 7 NNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYAS 77 (81)
Q Consensus 7 ~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~ 77 (81)
-.++.||||||++.- ...+++-|...|+-+|++||+|-+ +..|+ +.+.+.+.|..++.+|+|++|+.+.
T Consensus 609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLD 678 (832)
T KOG3678|consen 609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLD 678 (832)
T ss_pred ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHH
Confidence 467899999998775 468999999999999999999999 99997 5789999999999999999998653
No 7
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.57 E-value=4.1e-08 Score=61.12 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=34.5
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcC-------CceE----------EecCC-CCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQ-------NIQT----------FIDDQ-LNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~-------g~~v----------~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
|+|||||.+.|.. ..+..|...+... ++.. ..+.. ....+.+.+.|.++|+.|+++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5899999999953 3677777777652 2211 11211 22345789999999999999999999
Q ss_pred CCCCcCCCC
Q 044867 73 EGYASSIWC 81 (81)
Q Consensus 73 ~~y~~S~wC 81 (81)
++...|.|+
T Consensus 80 ~~T~~s~wV 88 (130)
T PF08937_consen 80 PNTAKSKWV 88 (130)
T ss_dssp TT----HHH
T ss_pred CCcccCcHH
Confidence 999999884
No 8
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=98.56 E-value=1.5e-07 Score=59.29 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=53.4
Q ss_pred cEEEeceeccCc-ccHHHHHHHHHhcC-CceEEecCC-CC--CCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 12 DVFVSFRGEDTR-DNFTSHLYSTLCRQ-NIQTFIDDQ-LN--RGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 12 dVFISy~~~D~~-~~~~~~L~~~L~~~-g~~v~~d~~-~~--~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
.|||||+++... ...|..|...|++. |+.|.+|.- .. +++...+=+.+.|++++.+|+|+||.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 599999996543 36688999999999 999999986 53 366778888899999999999999654
No 9
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=98.11 E-value=1.5e-05 Score=49.92 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=51.5
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.|||.|+ .| ...+..+...|+..|+.+-.-.+ ...|..+.+.+.+.+.+++-+|++++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 4999998 54 36788899999988887666555 7899999999999999999999999995
No 10
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=96.54 E-value=0.014 Score=33.66 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=49.3
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
.||||=.-.|-. ..-..|.+.+.+.|..+..-+. ...+....+.+.+.|++|++.|.++-..|-..
T Consensus 1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~ 67 (83)
T PF13271_consen 1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV 67 (83)
T ss_pred CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence 489997666643 4566777788887876555444 34467778899999999999999999888643
No 11
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=95.51 E-value=0.066 Score=36.41 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=48.0
Q ss_pred cEEEeceeccCcccHHHHHHHHHh-cCC-ceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLC-RQN-IQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~-~~g-~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
.|||-|+++- .+.....+|. +-. ..+|.|.-...|+.+.+.+.+-|.+.+-.|++.+|+-
T Consensus 84 kvFvv~ghd~----iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDD 145 (233)
T COG4271 84 KVFVVSGHDA----IARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDD 145 (233)
T ss_pred eEEEEeccHH----HHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcc
Confidence 8999997664 4555555655 333 3578887788999999999999999999999999974
No 12
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=93.56 E-value=0.25 Score=29.56 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHhcCCceEEecCC--CC---CC----CcchHHHHHHHHhcCeEEEEecCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQ--LN---RG----DEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~--~~---~G----~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..+..++.+.|+++|+.++...+ .. .+ +.+.+.-.++|++|+++|+++.+.
T Consensus 13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~ 72 (113)
T PF05014_consen 13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGF 72 (113)
T ss_dssp HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSS
T ss_pred HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCC
Confidence 46889999999999999888764 21 12 234455567899999999999863
No 13
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=92.97 E-value=0.74 Score=25.79 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=38.6
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
+++|+|.....+. ...+..+...|+..|+++-+|.. +.++...+..|-+.---.++++.+
T Consensus 1 p~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~ 60 (91)
T cd00860 1 PVQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGD 60 (91)
T ss_pred CeEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECc
Confidence 3677777654433 35678899999999999988742 456666776665433333444443
No 14
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=91.46 E-value=1.1 Score=25.12 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=39.2
Q ss_pred ccEEEeceec---cCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 11 YDVFVSFRGE---DTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 11 ~dVFISy~~~---D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
++|+|-.... .. ...+.++...|++.|+.+-+|. .+..+...+..|-..---.++++.++
T Consensus 2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~~g~~v~~~~---~~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 2 IDVAIVPLTDPRVEA-REYAQKLLNALLANGIRVLYDD---RERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred eEEEEEECCCCcHHH-HHHHHHHHHHHHHCCCEEEecC---CCcCHhHHHHHHHhCCCCEEEEECCC
Confidence 5666665333 22 3567788899999999998874 34566667766655444456666654
No 15
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=89.98 E-value=1.6 Score=24.78 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
..++.+|...|+++|+++.+|. .+.++...+.+|-. +....|+|
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~---~~~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDD---SDKSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEES---SSSTHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEC---CCCchhHHHHHHhhcCCeEEEEE
Confidence 4678999999999999999995 55666677777764 45555544
No 16
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=88.88 E-value=2.2 Score=25.84 Aligned_cols=62 Identities=10% Similarity=-0.003 Sum_probs=42.2
Q ss_pred CCcccEEEecee--ccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 8 NKKYDVFVSFRG--EDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 8 ~~~~dVFISy~~--~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
-..++|+|-... .+. ...+..|...|+..|+++-+|. . .++...+..|-+.---.++++.++
T Consensus 24 lap~~v~Ii~~~~~~~~-~~~a~~la~~LR~~gi~v~~d~--~--~sl~kqlk~A~k~g~~~~iiiG~~ 87 (121)
T cd00858 24 LAPIKVAVLPLVKRDEL-VEIAKEISEELRELGFSVKYDD--S--GSIGRRYARQDEIGTPFCVTVDFD 87 (121)
T ss_pred cCCcEEEEEecCCcHHH-HHHHHHHHHHHHHCCCEEEEeC--C--CCHHHHHHHhHhcCCCEEEEECcC
Confidence 346788887765 222 3567788999999999999984 2 567777777765444455555544
No 17
>COG0400 Predicted esterase [General function prediction only]
Probab=84.37 E-value=3.6 Score=27.66 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCCCcccEEEeceeccC--cccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh
Q 044867 6 RNNKKYDVFVSFRGEDT--RDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA 63 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~--~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~ 63 (81)
+.....-|||+|-..|. ......+|.+.|+..|.+|.... ...|-.+.++-.+++++
T Consensus 142 ~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~-~~~GH~i~~e~~~~~~~ 200 (207)
T COG0400 142 PDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRW-HEGGHEIPPEELEAARS 200 (207)
T ss_pred cccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEE-ecCCCcCCHHHHHHHHH
Confidence 35778899999988885 35678999999999999988775 45677777776666654
No 18
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=84.30 E-value=2.1 Score=30.47 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=52.2
Q ss_pred CCCCcccEEEeceeccCcccHHHHHHHHHhcC--CceEEecCC----CCCCCcchHHHHHHH-HhcCeEEEEecCCCCcC
Q 044867 6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ----LNRGDEISESLLNAI-QASAISVIVFSEGYASS 78 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~----~~~G~~~~~~i~~aI-~~S~~~I~v~S~~y~~S 78 (81)
...+.||+=+||.++- ..+++.....|+.+ .+..|.|-. +.+|+ +.+.+...- +.|++.+|.+..+|...
T Consensus 173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K 249 (329)
T COG4916 173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICK 249 (329)
T ss_pred ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEe
Confidence 3468899999998886 47898988889844 355777743 34443 333333322 35888999999999999
Q ss_pred CCC
Q 044867 79 IWC 81 (81)
Q Consensus 79 ~wC 81 (81)
.||
T Consensus 250 ~~c 252 (329)
T COG4916 250 STC 252 (329)
T ss_pred eee
Confidence 998
No 19
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=79.66 E-value=8.1 Score=21.66 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..+..|...|+..|+++.+|.+ ++++...+..|-..---.++++-++
T Consensus 18 ~~a~~la~~Lr~~g~~v~~d~~---~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 18 ELAEKLYAELQAAGVDVLLDDR---NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHHCCCEEEEECC---CCCcccchhHHHhcCCCEEEEECCc
Confidence 5678889999999999999853 3455556655544333344444443
No 20
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=78.26 E-value=7.6 Score=29.38 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=43.8
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
....+|+|-.-.++. ...+..|...|++.|++|-+|. .|.++...+..|-+.---.++|+-++
T Consensus 468 ~~p~~v~vi~~~~~~-~~~a~~ia~~LR~~Gi~v~~d~---~~~sl~~q~k~A~~~g~~~~iiiG~~ 530 (563)
T TIGR00418 468 LAPVQVVVIPVNERH-LDYAKKVAQKLKKAGIRVDVDD---RNERLGKKIREAQKQKIPYMLVVGDK 530 (563)
T ss_pred CCCceEEEEEccchH-HHHHHHHHHHHHHcCCEEEEEC---CCCCHHHHHHHHHhcCCCEEEEEchh
Confidence 356788887655443 4678899999999999999984 35667777777765433344555443
No 21
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=76.79 E-value=4.7 Score=26.73 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=34.2
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAIS 67 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~ 67 (81)
.-+..|..+.+.+|+-+|-|.+. +|+.|...|.+.+-++..+
T Consensus 36 ~~i~~i~~~~~~rgVIIfTDpD~-~GekIRk~i~~~vp~~kha 77 (174)
T TIGR00334 36 ETINLIKKAQKKQGVIILTDPDF-PGEKIRKKIEQHLPGYENC 77 (174)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCC-chHHHHHHHHHHCCCCeEE
Confidence 45778888889999999999864 6899999988888776654
No 22
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=76.30 E-value=2.2 Score=26.46 Aligned_cols=32 Identities=6% Similarity=0.067 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHhcCCceEEecCC-C---CCCCcchH
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQ-L---NRGDEISE 55 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~-~---~~G~~~~~ 55 (81)
...+.+|++.|+..|++++.|.+ - .+|..+.+
T Consensus 43 ~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~~ 78 (128)
T cd02426 43 RDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLDK 78 (128)
T ss_pred HHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHHh
Confidence 56788999999999999999876 3 46665543
No 23
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=75.20 E-value=11 Score=20.38 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=33.2
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
+|+|-....+. ..-+-.+...|+..|+++.++.. +..+...+..|-..--..++++.
T Consensus 3 ~v~i~~~~~~~-~~~a~~i~~~Lr~~g~~v~~~~~---~~~~~~~~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGA-LSEALELAEQLRDAGIKAEIDYG---GRKLKKQFKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCEEEEEc
Confidence 67666544432 24567888999999999888642 23445555555443323334443
No 24
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=72.25 E-value=6.2 Score=23.56 Aligned_cols=60 Identities=8% Similarity=0.111 Sum_probs=38.5
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecC--------C-CC------C---CCcchHHHHHHHHhcCeEEEEecCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD--------Q-LN------R---GDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~--------~-~~------~---G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
||||....|. .-...+...|.+.|++++--+ . +. . |..-.+++.+.|++=.+-+||-.|+
T Consensus 3 vlisv~~~dk--~~~~~~a~~l~~~G~~i~aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~ 80 (116)
T cd01423 3 ILISIGSYSK--PELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPS 80 (116)
T ss_pred EEEecCcccc--hhHHHHHHHHHHCCCEEEEccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCC
Confidence 7999988874 344577788888888875421 0 10 1 1111267888888877777777654
No 25
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=72.11 E-value=14 Score=27.26 Aligned_cols=61 Identities=18% Similarity=0.262 Sum_probs=40.2
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
...||+|-+-..+. ...+-++...|+++|+++-+|- .+.++...+..|-+.--..++|+-+
T Consensus 324 ~~~~v~v~~~~~~~-~~~a~~ia~~LR~~Gi~veid~---~~~~l~k~~k~A~~~~~~~viiiG~ 384 (430)
T CHL00201 324 QSIDVYIATQGLKA-QKKGWEIIQFLEKQNIKFELDL---SSSNFHKQIKQAGKKRAKACIILGD 384 (430)
T ss_pred CCCCEEEEEcCHHH-HHHHHHHHHHHHhCCCeEEEee---CCCCHHHHHHHHHHcCCCEEEEEec
Confidence 44689998754432 3456789999999999988863 2455677777776543334444443
No 26
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=71.03 E-value=16 Score=27.07 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=40.8
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVIV 70 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~v 70 (81)
--.++|+|-.-.++. ...+..|...|++.|+++.+|. .++++...+..|-+. .+.+|+|
T Consensus 272 LAP~qV~IIpl~eel-~e~AlkLA~eLR~aGIrVeiDl---~srSLgKQiK~AdK~GaPfvIII 331 (387)
T PRK14938 272 LNPIQVRILPVKKDF-LDFSIQVAERLRKEGIRVNVDD---LDDSLGNKIRRAGTEWIPFVIII 331 (387)
T ss_pred cCcceEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEE
Confidence 346777776655543 3567889999999999999984 356777788777654 4444443
No 27
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=69.52 E-value=20 Score=21.01 Aligned_cols=61 Identities=13% Similarity=0.247 Sum_probs=39.0
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCC---------CC-----CCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ---------LN-----RGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~---------~~-----~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.||+|.+..|. .....+...|.+.|++++--+. +. ....-.++|.+.|++=++.++|-.++
T Consensus 2 ~vl~s~~~~~k--~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 2 TVFISVADRDK--PEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred eEEEEEEcCcH--hHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC
Confidence 38899987774 3344777777777877754311 10 00011368889999888888888664
No 28
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=67.51 E-value=23 Score=21.04 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=38.4
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCC--------------CCCC-CcchHHHHHHHHh-cCeEEEEecCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ--------------LNRG-DEISESLLNAIQA-SAISVIVFSEG 74 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~--------------~~~G-~~~~~~i~~aI~~-S~~~I~v~S~~ 74 (81)
||||-+..|. .-...+...|.+.|+.++--+. +..+ +.-.+++.+.|++ -++-+||..|+
T Consensus 2 i~isv~d~~K--~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 2 VFLSVSDHVK--AMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred EEEEEEcccH--HHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 7888877764 3344666777777777643311 1111 1013679999999 99999998775
No 29
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=67.43 E-value=6.7 Score=23.17 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=32.3
Q ss_pred ccCcccHHHHHHHHHhcCCceEEecCC-CC----------CCCcchHHHHHHHHhcCeEEEEecC
Q 044867 20 EDTRDNFTSHLYSTLCRQNIQTFIDDQ-LN----------RGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~----------~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
.|.|+.-+-.|.+.|.++|+.|...+- +. .|-.+.+.+.++++.++..|+....
T Consensus 12 ~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h 76 (106)
T PF03720_consen 12 DDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDH 76 (106)
T ss_dssp S--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--
T ss_pred cccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecC
Confidence 456667788999999999988765432 21 1222334667888889887765443
No 30
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=66.50 E-value=9.8 Score=29.07 Aligned_cols=48 Identities=19% Similarity=0.368 Sum_probs=33.8
Q ss_pred CCCcccEEEecee--ccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcch
Q 044867 7 NNKKYDVFVSFRG--EDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEIS 54 (81)
Q Consensus 7 ~~~~~dVFISy~~--~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~ 54 (81)
...+++|+|---. .+.....+.+|...|+..|+++-+|.+ -.+|..+.
T Consensus 465 ~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k~~ 515 (565)
T PRK09194 465 AIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVKFA 515 (565)
T ss_pred ccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHHHH
Confidence 3567899887543 222246788999999999999999975 44554443
No 31
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=66.34 E-value=22 Score=20.21 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=41.1
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecC-CC-------CCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD-QL-------NRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~-~~-------~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
+|.+.++--.+..++.+|...|.++|.++.+-+ +. -.+-...+....++..|+..|+++.+..
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCH
Confidence 355655554455778899999988887654432 11 1112234556688999999999998764
No 32
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=66.23 E-value=28 Score=25.83 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=37.8
Q ss_pred CcccEEEecee--ccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEEecCC
Q 044867 9 KKYDVFVSFRG--EDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIVFSEG 74 (81)
Q Consensus 9 ~~~dVFISy~~--~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v~S~~ 74 (81)
.+++|.|---. .+.....+.+|...|++.|++|.+|.+ +..+...+.+|-. ... .++|+-++
T Consensus 344 aP~qV~Iipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~---~~~lg~ki~~a~~~giP-~~iiVG~~ 408 (439)
T PRK12325 344 APFKVGIINLKQGDEACDAACEKLYAALSAAGIDVLYDDT---DERPGAKFATMDLIGLP-WQIIVGPK 408 (439)
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHhHHHHHHHHcCCC-EEEEECCc
Confidence 45788776432 222346788999999999999999964 2334444444433 333 44444444
No 33
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=66.18 E-value=21 Score=27.45 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=42.4
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
...+|+|-.-.... ...+..|...|+++|++|-+|. .+..+...+..|-..---.++|+-++
T Consensus 538 ~p~~v~Ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~kki~~A~~~g~~~~iiiG~~ 599 (638)
T PRK00413 538 APVQVVVLPITDKH-ADYAKEVAKKLKAAGIRVEVDL---RNEKIGYKIREAQLQKVPYMLVVGDK 599 (638)
T ss_pred CcceEEEEEeChhH-HHHHHHHHHHHHhCCCEEEEEC---CCCCHhHHHHHhhccCCCEEEEEcch
Confidence 35688887655433 3678899999999999999985 35566777777665433345555443
No 34
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=65.36 E-value=26 Score=24.67 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=28.5
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCc----eEEecCCCCCCC-cchHHHHHHHHh
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNI----QTFIDDQLNRGD-EISESLLNAIQA 63 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~----~v~~d~~~~~G~-~~~~~i~~aI~~ 63 (81)
|.|-|...|-....+..+.+.|+++|+ .+-..+.+.+|+ ++. .+.+.|+.
T Consensus 157 vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~-~~l~~ik~ 211 (377)
T cd06379 157 VILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVT-SLLQEAKE 211 (377)
T ss_pred EEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHH-HHHHHHhh
Confidence 444454444334577888888888888 554444454553 444 34445554
No 35
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=64.99 E-value=22 Score=27.37 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=39.8
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+.+|+|-.-.++. ...+..+...|+++|+++-+|. .++.+...+..|-. +.+..|+|
T Consensus 437 aP~qV~Iipi~e~~-~~~A~~Ia~~LR~~GirVelD~---~~~~lgkkir~A~k~gip~viII 495 (545)
T PRK14799 437 SSVQVRVLPITDEV-NEYAEKVLNDMRKRRIRAEIDY---AGETLSKRIKNAYDQGVPYILIV 495 (545)
T ss_pred CCceEEEEEcCHHH-HHHHHHHHHHHHhCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEE
Confidence 35688877654432 4678899999999999999985 35567777777654 34444443
No 36
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=64.02 E-value=17 Score=22.85 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=40.1
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcC
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASA 65 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~ 65 (81)
.++|+-..+.-....+++.|..+++.+|+-++.|.+ .+|+.|...|.+.+..+.
T Consensus 30 ~~~i~~~g~~i~~~~~ie~i~~~~~~k~VIILTD~D-~~Ge~Irk~l~~~l~~~~ 83 (127)
T COG1658 30 AGVIITNGSAINSLETIELIKKAQKYKGVIILTDPD-RKGERIRKKLKEYLPGAK 83 (127)
T ss_pred CceEEEcCCccchHHHHHHHHHhhccCCEEEEeCCC-cchHHHHHHHHHHhcccc
Confidence 456666655322136788999999999999999975 368999999988887744
No 37
>PF11201 DUF2982: Protein of unknown function (DUF2982); InterPro: IPR021367 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=63.23 E-value=7.3 Score=25.28 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=20.1
Q ss_pred CCcccEEEeceeccCc-ccHHHHHHHHH
Q 044867 8 NKKYDVFVSFRGEDTR-DNFTSHLYSTL 34 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~-~~~~~~L~~~L 34 (81)
...||+|||-+.-|.. .+|+..|++.+
T Consensus 123 ~lGYdlfi~~~~LDR~~~eFv~Llr~~~ 150 (152)
T PF11201_consen 123 LLGYDLFIPASDLDRDPEEFVGLLRRYQ 150 (152)
T ss_pred hcCceEEeEhhhccCCHHHHHHHHHHHH
Confidence 4579999999888843 57777776654
No 38
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=62.87 E-value=41 Score=23.20 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=36.5
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC---CcchHHHHHHHHh--cCeEEEEec
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG---DEISESLLNAIQA--SAISVIVFS 72 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G---~~~~~~i~~aI~~--S~~~I~v~S 72 (81)
.|.+-|...+-.......+...|+++|+.+-....+.+| .++.+.+. .|+. .+++|+...
T Consensus 137 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~-~i~~~~~dvvi~~~~ 201 (350)
T cd06366 137 RVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALK-KLKEKDSRVIVVHFS 201 (350)
T ss_pred EEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHH-HHhcCCCeEEEEECC
Confidence 455556554433467888889999999987666556665 34554444 4543 444444443
No 39
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=62.56 E-value=40 Score=22.86 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=31.6
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhc
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQAS 64 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S 64 (81)
.|.+-|...+.....+..|...|+++|+++-....+.+| .++... ...|+++
T Consensus 137 ~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~-l~~i~~~ 189 (334)
T cd06342 137 KVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAI-LTKIKAA 189 (334)
T ss_pred EEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCCCCCccHHHH-HHHHHhc
Confidence 455555444433467778888888889887665555555 445444 4456554
No 40
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=62.39 E-value=9.9 Score=21.07 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=23.3
Q ss_pred HHHHhc--CCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEe
Q 044867 31 YSTLCR--QNIQTFIDDQLNRGDEISESLLNAIQASAISVIVF 71 (81)
Q Consensus 31 ~~~L~~--~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~ 71 (81)
.+.|.+ +.+-+++|.+ .+|+.....+.+.+..-...+-++
T Consensus 36 ~~~L~~~~~~vii~~D~D-~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 36 AELLKRLAKEVILAFDGD-EAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred HHHHHhcCCeEEEEECCC-HHHHHHHHHHHHHHHHCCCeEEEE
Confidence 344444 5677777765 456666666666666555544443
No 41
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=61.81 E-value=31 Score=26.95 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=37.8
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
-.++|+|---.++ ....+..|.+.|+.+|++|.+|.+ ++++...+.+|-. .....|+|
T Consensus 498 AP~qV~IIpi~e~-~~~~A~eIa~~Lr~~GirV~lDdr---~~slgkKir~A~~~GiP~iIVI 556 (613)
T PRK03991 498 SPTQVRVIPVSER-HLDYAEEVADKLEAAGIRVDVDDR---DESLGKKIRDAGKEWIPYVVVI 556 (613)
T ss_pred cCceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 3568777654443 246889999999999999999864 3455555555543 34444443
No 42
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=61.35 E-value=22 Score=24.94 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=31.1
Q ss_pred cEEEeceecc-CcccHHHHHHHHHhcCCceEEecCCCCCC---CcchHHHHHHHHhcC
Q 044867 12 DVFVSFRGED-TRDNFTSHLYSTLCRQNIQTFIDDQLNRG---DEISESLLNAIQASA 65 (81)
Q Consensus 12 dVFISy~~~D-~~~~~~~~L~~~L~~~g~~v~~d~~~~~G---~~~~~~i~~aI~~S~ 65 (81)
.|.|-+...+ -....+..+.++|++.|+.+-....+.++ ..+...|. .|..+.
T Consensus 139 ~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~-~i~~~~ 195 (389)
T cd06352 139 VAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFMEDNSGAEDLLEILQ-DIKRRS 195 (389)
T ss_pred EEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEecCCccchhHHHHHH-Hhhhcc
Confidence 3455454443 12466778888888889887655445554 45555554 444444
No 43
>PLN02530 histidine-tRNA ligase
Probab=61.15 E-value=31 Score=25.94 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=40.2
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
...||+|-+-.++. ...+-.+...|+++|+++-+|- . +.++...+..|-+.--..|+++.
T Consensus 400 ~~~dVlVi~~~~~~-~~~A~~ia~~LR~~Gi~vevd~--~-~~~l~k~ik~A~k~g~~~iviiG 459 (487)
T PLN02530 400 HQVDDVVFALDEDL-QGAAAGVASRLREKGRSVDLVL--E-PKKLKWVFKHAERIGAKRLVLVG 459 (487)
T ss_pred CCCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEec--C-CCCHHHHHHHHHHCCCCEEEEEc
Confidence 45689988755443 3467789999999999998873 2 35567777777664433444443
No 44
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=60.94 E-value=14 Score=25.86 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCc---chHHHHHHHHhcCeEE
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDE---ISESLLNAIQASAISV 68 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~---~~~~i~~aI~~S~~~I 68 (81)
+.+|.+.|.++|+.+..-. -.||+ |.+.+..++++++++|
T Consensus 23 a~~la~~L~~~G~~v~~~~--~VgD~~~~I~~~l~~a~~r~D~vI 65 (255)
T COG1058 23 AAFLADELTELGVDLARIT--TVGDNPDRIVEALREASERADVVI 65 (255)
T ss_pred HHHHHHHHHhcCceEEEEE--ecCCCHHHHHHHHHHHHhCCCEEE
Confidence 5689999999999887763 45655 4455555555555444
No 45
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=59.96 E-value=27 Score=25.28 Aligned_cols=42 Identities=5% Similarity=0.009 Sum_probs=26.0
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG 50 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G 50 (81)
+|++=+.| +...|-....++.+.++|+++|+.+-..+.+.++
T Consensus 171 ~w~~Vaii-~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~ 212 (403)
T cd06361 171 GWNWVGII-ITDDDYGRSALETFIIQAEANGVCIAFKEILPAS 212 (403)
T ss_pred CCcEEEEE-EecCchHHHHHHHHHHHHHHCCeEEEEEEEecCc
Confidence 34443333 4444434567888889999999877555445443
No 46
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=59.95 E-value=31 Score=26.24 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=39.9
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~v 70 (81)
.+.+|+|---.++. ...+..|...|++.|+++-+|. .+..+...+..|-.. .+..|+|
T Consensus 475 ~p~~v~Ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~kk~~~A~~~g~p~~iiv 533 (575)
T PRK12305 475 APVQVVIIPVADAH-NEYAEEVAKKLRAAGIRVEVDT---SNERLNKKIRNAQKQKIPYMLVV 533 (575)
T ss_pred CCccEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHhcCCCEEEEE
Confidence 35688887644432 3578899999999999999985 345667777776654 4444444
No 47
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=59.58 E-value=32 Score=26.67 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=42.7
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
....+|+|-.-.++.....+..|...|+++|+++-+|. .+.++...+..|-+.---.++|+-+
T Consensus 539 ~ap~qV~Ii~~~~~~~~~~a~~la~~LR~~Gi~veid~---~~~sl~kq~k~A~k~g~~~~iiiG~ 601 (639)
T PRK12444 539 LAPVQVKVIPVSNAVHVQYADEVADKLAQAGIRVERDE---RDEKLGYKIREAQMQKIPYVLVIGD 601 (639)
T ss_pred cCCceEEEEEcccHHHHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEEcc
Confidence 35678887765541124678899999999999999985 3566777777776543334444444
No 48
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=58.99 E-value=54 Score=23.25 Aligned_cols=63 Identities=11% Similarity=0.115 Sum_probs=40.5
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
..|+|-+....-...+.+.+.+.|+.+|.++-.++...+++.-...+...|..+..-+|++..
T Consensus 149 k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~ 211 (366)
T COG0683 149 KRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGG 211 (366)
T ss_pred cEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCCEEEECC
Confidence 356777766665578899999999999997444444555543255666666665554444443
No 49
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.83 E-value=33 Score=19.77 Aligned_cols=47 Identities=9% Similarity=0.079 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCeEEEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
....+.+.+++.|...-.. .-..| ..-...|...|.+++++|++..-
T Consensus 11 ~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIKKADLVIVFTDY 58 (97)
T ss_pred cHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcCCCCEEEEEeCC
Confidence 4678888899999874443 11112 22223588889999999887653
No 50
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=58.11 E-value=28 Score=23.42 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=26.4
Q ss_pred EEEeceeccCc--ccHHHHHHHHHhcCCceEEecC
Q 044867 13 VFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 13 VFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
.||.+-+-|.. .+.+..|.+.|+++|++|.+-.
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr 38 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR 38 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 48888777743 5788999999999999877764
No 51
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=57.15 E-value=43 Score=20.47 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=28.5
Q ss_pred CCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhc
Q 044867 7 NNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQAS 64 (81)
Q Consensus 7 ~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S 64 (81)
....+|++|.|...... .....+ ....++.+.. +.|.++.+.+.++++..
T Consensus 7 ~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~----Q~g~dLG~Rm~~a~~~~ 56 (122)
T PF09837_consen 7 QADGADVVLAYTPDGDH-AAFRQL---WLPSGFSFFP----QQGGDLGERMANAFQQA 56 (122)
T ss_dssp -TSSSEEEEEE----TT-HHHHHH---HH-TTSEEEE------SSSHHHHHHHHHHHH
T ss_pred cCCCcCEEEEEcCCccH-HHHhcc---ccCCCCEEee----cCCCCHHHHHHHHHHHH
Confidence 45678999999888754 222222 4455665554 57888888888888876
No 52
>PRK07933 thymidylate kinase; Validated
Probab=57.04 E-value=38 Score=22.45 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=23.0
Q ss_pred EEeceeccCc--ccHHHHHHHHHhcCCceEEe
Q 044867 14 FVSFRGEDTR--DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 14 FISy~~~D~~--~~~~~~L~~~L~~~g~~v~~ 43 (81)
||.+.+-|.. .+.+..|.+.|+.+|++|..
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~ 33 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVAT 33 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6777776633 57889999999999987654
No 53
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=56.70 E-value=43 Score=22.48 Aligned_cols=56 Identities=9% Similarity=0.019 Sum_probs=36.0
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.+|++.|..+....| -.| ..+--=||+|. --+..+..++.+.+.+...-|.++||.
T Consensus 103 ~i~tr~Se~E~~~~~-~~~----~~~~~~VW~D~--f~~~~~~~~~~~~~~~~~~~~c~VSpE 158 (192)
T cd08584 103 RTATRVSEYEPIPTA-LSL----YEKADWVWIDS--FTSLWLDNDLILKLLKAGKKICLVSPE 158 (192)
T ss_pred eeEEeecccccchHH-HHh----hccccEEEEec--ccccCCCHHHHHHHHHCCcEEEEECHH
Confidence 566766666543222 111 12222279996 345777888888888899999999985
No 54
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=56.46 E-value=18 Score=22.54 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCeEEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAISVI 69 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~~I~ 69 (81)
....|...|++.|+++..-.-+.-. +.+.+.|.++++++++.|.
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIt 72 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLT 72 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEE
Confidence 3456777788889876543211111 2344555555555555543
No 55
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=56.04 E-value=72 Score=22.74 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEEEecC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVIVFSE 73 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~v~S~ 73 (81)
+..|.+.|+..|+.+-..+....++.-..++.+.|++ .+++|+..++
T Consensus 157 ~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~rvii~~~~~ 204 (387)
T cd06386 157 LEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASERVVIMCAGA 204 (387)
T ss_pred HHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcCcEEEEecCH
Confidence 7788899999998876654333443334455555654 4444444343
No 56
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=55.54 E-value=62 Score=22.34 Aligned_cols=52 Identities=2% Similarity=-0.029 Sum_probs=34.8
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhc
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQAS 64 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S 64 (81)
.|.+-|...+-...+...+...|+++|+++-.+....+|+ ++...+.+ |+.+
T Consensus 138 ~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~-l~~~ 190 (333)
T cd06328 138 KIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEEYAPTDTTDFTPYAQR-LLDA 190 (333)
T ss_pred eEEEEecCccccHHHHHHHHHHHHhCCCEEeeeeeCCCCCcchHHHHHH-HHhc
Confidence 5666665555445778888899999999887665566664 46655554 4443
No 57
>PTZ00445 p36-lilke protein; Provisional
Probab=54.99 E-value=30 Score=23.76 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=29.5
Q ss_pred ccHHHHHHHHHhcCCceE-EecC--CCCC-------------------CCcchHHHHHHHHhcCeEEEEec
Q 044867 24 DNFTSHLYSTLCRQNIQT-FIDD--QLNR-------------------GDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v-~~d~--~~~~-------------------G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
..-++.+.+.|++.||++ ..|= .+.. +.+-...+..++.++.+-|+|++
T Consensus 28 ~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVT 98 (219)
T PTZ00445 28 HESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVT 98 (219)
T ss_pred HHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEE
Confidence 356788888999999984 3332 2222 22223456677777766655553
No 58
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=54.75 E-value=54 Score=22.73 Aligned_cols=61 Identities=7% Similarity=0.047 Sum_probs=35.2
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCeEEEEec
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~~I~v~S 72 (81)
..|.+-|...+-....+..+...+++.|+.|-..+.+.+| .++.. +...|.+++.-++++.
T Consensus 145 ~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~-~i~~l~~~~~d~v~~~ 206 (347)
T cd06340 145 KTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTS-EVLKLKAANPDAILPA 206 (347)
T ss_pred ceEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCCCcchHH-HHHHHHhcCCCEEEEc
Confidence 3455555433323456777777888899887765555555 34544 4445665544444443
No 59
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=54.24 E-value=48 Score=20.17 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHhcCCceE-EecC-CC-CC-----------CCcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 24 DNFTSHLYSTLCRQNIQT-FIDD-QL-NR-----------GDEISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v-~~d~-~~-~~-----------G~~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
..+++.+.+.|++.|+.+ .+|- +. .+ -.+-.+++.+.|.+++ .|++.||.|..+
T Consensus 17 ~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD-~iI~~sP~y~~~ 84 (152)
T PF03358_consen 17 RKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEAD-GIIFASPVYNGS 84 (152)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSS-EEEEEEEEBTTB
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCC-eEEEeecEEcCc
Confidence 467888888888888654 2221 11 11 1223467788888999 556677777643
No 60
>PLN02908 threonyl-tRNA synthetase
Probab=53.73 E-value=46 Score=26.20 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=41.6
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
..+|+|-.-+.+. ...+..+.+.|+++|++|-+|. .+..+...+..|-..---.++|+-+
T Consensus 589 p~qv~Vipv~~~~-~~~A~~va~~LR~~Gi~vevd~---~~~~l~kkir~A~~~g~~~viivG~ 648 (686)
T PLN02908 589 PRQAIVVPISEKS-QDYAEEVRAQLHAAGFYVDVDV---TDRKIQKKVREAQLAQYNYILVVGE 648 (686)
T ss_pred CceEEEEEECHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEECc
Confidence 4678777655443 3678899999999999999984 4667777777775543334444443
No 61
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=53.45 E-value=64 Score=24.26 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred CCcccEEEecee-----ccCcccHHHHHHHHHhcCCceEEecC-C-CCCCCcch
Q 044867 8 NKKYDVFVSFRG-----EDTRDNFTSHLYSTLCRQNIQTFIDD-Q-LNRGDEIS 54 (81)
Q Consensus 8 ~~~~dVFISy~~-----~D~~~~~~~~L~~~L~~~g~~v~~d~-~-~~~G~~~~ 54 (81)
.-+++|+|---. .+.....+..|...|+..|++|-+|. + -.+|..+.
T Consensus 285 iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~lD~r~~~s~gkK~~ 338 (477)
T PRK08661 285 IAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKLDDRSDKTPGWKFN 338 (477)
T ss_pred cCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 336888876431 12224578899999999999999997 3 45554443
No 62
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=53.44 E-value=27 Score=25.00 Aligned_cols=27 Identities=11% Similarity=-0.111 Sum_probs=18.2
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRG 50 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G 50 (81)
......+.+.|+++|+.+-..+.+.++
T Consensus 150 ~~~~~~~~~~~~~~g~~iv~~~~~~~~ 176 (404)
T cd06370 150 SSVFETLKEEAELRNITISHVEYYADF 176 (404)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEECCC
Confidence 456677777888888877655445555
No 63
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=53.32 E-value=43 Score=19.33 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=32.6
Q ss_pred cHHHHHHHHHhcCCceEEecCC-------CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQ-------LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~-------~~~G~~~~~~i~~aI~~ 63 (81)
..+.++.+.-+++|+.++-|.. +..|+.|.+++.+++.+
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~~~LAr~L~~~~ig~~IP~~ly~aVAe 72 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVEDPDLVDVLLKLDLDDEIPEELYEVVAE 72 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 6788999999999999988852 57899999999888754
No 64
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=53.30 E-value=20 Score=23.42 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=31.2
Q ss_pred HHhcCCce-EEecCC--C-CCC-CcchHHHHHHHHhcCe-----EEEEecCCC
Q 044867 33 TLCRQNIQ-TFIDDQ--L-NRG-DEISESLLNAIQASAI-----SVIVFSEGY 75 (81)
Q Consensus 33 ~L~~~g~~-v~~d~~--~-~~G-~~~~~~i~~aI~~S~~-----~I~v~S~~y 75 (81)
.|+++||+ +-+|.+ + .++ ..+.+++.+.+++++. -|+|+|-+-
T Consensus 35 ~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsa 87 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSA 87 (168)
T ss_pred hhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 38899998 567766 4 455 5578888888887663 488888764
No 65
>PF13289 SIR2_2: SIR2-like domain
Probab=52.44 E-value=48 Score=19.69 Aligned_cols=9 Identities=22% Similarity=0.652 Sum_probs=5.6
Q ss_pred EEEeceecc
Q 044867 13 VFVSFRGED 21 (81)
Q Consensus 13 VFISy~~~D 21 (81)
+||.|+-.|
T Consensus 90 lfiGys~~D 98 (143)
T PF13289_consen 90 LFIGYSFND 98 (143)
T ss_pred EEEEECCCC
Confidence 466666665
No 66
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=52.35 E-value=44 Score=19.44 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCceE-EecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 27 TSHLYSTLCRQNIQT-FIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v-~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
+..|...|+++|+++ .+|-... .+++.+.+.+.+--++.+|=
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~-----~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVP-----PEELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB------HHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEECCCCC-----HHHHHHHHhcCCCcEEEEEc
Confidence 456777888889876 4443221 26777777766655565553
No 67
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=51.70 E-value=59 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=19.3
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCce
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQ 40 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~ 40 (81)
|-|=|...|....++..|.+.|+++|+.
T Consensus 139 vaii~~~~~~g~~~~~~l~~~l~~~g~~ 166 (362)
T cd06367 139 FSVVTSRDPGYRDFLDRVETTLEESFVG 166 (362)
T ss_pred EEEEEEcCcccHHHHHHHHHHHHhcccc
Confidence 4455655554456788888889888876
No 68
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=51.31 E-value=43 Score=22.79 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=23.6
Q ss_pred cccE-EEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHH-HhcCe-EEEEecCCCCcC
Q 044867 10 KYDV-FVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAI-QASAI-SVIVFSEGYASS 78 (81)
Q Consensus 10 ~~dV-FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI-~~S~~-~I~v~S~~y~~S 78 (81)
.++| ++-+...+....|...|...|+++|+.-..= ..||+.......+++ ++..+ +-++=++.|+.+
T Consensus 62 G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~--~~P~d~~l~~~l~~~~~~~~i~~~~~~~~~Fl~s 131 (224)
T PF04244_consen 62 GFRVHYIELDDPENTQSFEDALARALKQHGIDRLHV--MEPGDYRLEQRLESLAQQLGIPLEVLEDPHFLTS 131 (224)
T ss_dssp T--EEEE-TT-TT--SSHHHHHHHHHHHH----EEE--E--S-HHHHHHHHH----SSS-EEEE--TTSSS-
T ss_pred CCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEE--ECCCCHHHHHHHHhhhcccCCceEEeCCCCccCC
Confidence 3444 3444333322357777777777776642222 356665333332222 22333 344555666654
No 69
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=51.07 E-value=50 Score=24.40 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=22.3
Q ss_pred eccCcccHHHHHHHHHhcCCceEEecCCCCCCC
Q 044867 19 GEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD 51 (81)
Q Consensus 19 ~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~ 51 (81)
..|.....++.|.++|+++|+.+-..+.+..+.
T Consensus 181 d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~~~~ 213 (469)
T cd06365 181 DDDRGEQFLSDLREEMQRNGICLAFVEKIPVNM 213 (469)
T ss_pred cChhHHHHHHHHHHHHHHCCeEEEEEEEecCCc
Confidence 333334678889999999998876655454443
No 70
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=50.91 E-value=41 Score=23.06 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=34.0
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHHhcC--eEEEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQASA--ISVIVF 71 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~~S~--~~I~v~ 71 (81)
|-+-|...+-....+..+.+.+++.|+.+-....+..+ ..-...+.+.|+.+. ++|+..
T Consensus 163 v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~ 225 (348)
T cd06350 163 VGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFG 225 (348)
T ss_pred EEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 44444443323467788888899999876655445555 122335556676654 444433
No 71
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=50.84 E-value=17 Score=24.11 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCcccEEEeceeccC-----cccHHHHHHHHHhcCCceEEecCC-C-CCCCcchH
Q 044867 8 NKKYDVFVSFRGEDT-----RDNFTSHLYSTLCRQNIQTFIDDQ-L-NRGDEISE 55 (81)
Q Consensus 8 ~~~~dVFISy~~~D~-----~~~~~~~L~~~L~~~g~~v~~d~~-~-~~G~~~~~ 55 (81)
.-+++|+|---.... ....+..|...|+..|+++-+|.+ - .+|..+.+
T Consensus 8 iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K~~~ 62 (202)
T cd00862 8 VAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWKFND 62 (202)
T ss_pred hcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHHHHH
Confidence 456677776433220 235788999999999999999975 3 66765543
No 72
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.70 E-value=22 Score=19.08 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=21.5
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceE
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v 41 (81)
.-.|+++..-.+. .-+..|.++|++.|+.+
T Consensus 37 ~~~v~v~ie~~~~--~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 37 EARVLVGIQVPDR--EDLAELKERLEALGYPY 66 (68)
T ss_pred ceEEEEEEEeCCH--HHHHHHHHHHHHcCCCc
Confidence 4567777766652 45778888999998853
No 73
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=75 Score=23.90 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=43.2
Q ss_pred CCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 7 NNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 7 ~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.....||||..-+++. ...+-.|...|+..|+++=++- .+..+..++..|-+ .++.+|++
T Consensus 332 ~~~~~~v~v~~~~~~~-~~~a~~la~~LR~~g~~~~~~~---~~r~~k~q~k~A~~~g~~~~vii 392 (429)
T COG0124 332 VETRVDVYVVPLGEDA-EPEALKLAQKLRAAGISVEVDY---SGRKLKKQFKYADKLGARFAVIL 392 (429)
T ss_pred cCCCCCEEEEEcCchh-HHHHHHHHHHHHHcCCcEEEEe---ccccHHHHHHHHHHCCCCEEEEE
Confidence 4567899999888875 3567789999999999887773 33447777777776 45555554
No 74
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=50.42 E-value=12 Score=28.84 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=32.3
Q ss_pred CcccEEEece-ecc-CcccHHHHHHHHHhcCCceEEecCC-CCCCCcchH
Q 044867 9 KKYDVFVSFR-GED-TRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISE 55 (81)
Q Consensus 9 ~~~dVFISy~-~~D-~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~ 55 (81)
-+|+|=|--- .+| .....+.+|++.|+..|++|.+|++ -.+|..+.+
T Consensus 472 AP~qV~Iip~~~~~~~~~~~a~~l~~~L~~~gi~v~~DDr~~~~G~K~~d 521 (568)
T TIGR00409 472 APYDVVIVVMNMKDEEQQQLAEELYSELLAQGVDVLLDDRNERAGVKFAD 521 (568)
T ss_pred CCeEEEEEEcCCChHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHh
Confidence 4566644321 222 2346789999999999999999987 667766554
No 75
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=50.15 E-value=74 Score=21.66 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=28.2
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhc
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQAS 64 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S 64 (81)
.|.|-|...+-....+..+...|++.|+++--...+.+|+ ++.+ +...|+.+
T Consensus 139 ~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~-~v~~l~~~ 191 (312)
T cd06346 139 SVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSS-EVAAAAAG 191 (312)
T ss_pred eEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHH-HHHHHHhc
Confidence 3444443333334566777777888888766544455553 4443 34445443
No 76
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=49.95 E-value=71 Score=22.14 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=26.6
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHH
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLN 59 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~ 59 (81)
..|.|-|...+-....+..+.+.|++.|+.+-....+.++ .++.+.+.+
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~ 188 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLR 188 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHH
Confidence 3455555444333466777777777778776543334444 344444433
No 77
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=49.85 E-value=55 Score=23.32 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=32.8
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhc---CeEEEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQAS---AISVIVF 71 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S---~~~I~v~ 71 (81)
|.|-|...+........|.+.|+++|+.+-..+.+..++.=...+.+.|+.. +++|+..
T Consensus 135 vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~ 196 (382)
T cd06371 135 VAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCM 196 (382)
T ss_pred EEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4444544442234678888889999987665444554543233555556543 3444433
No 78
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=49.56 E-value=15 Score=21.77 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=13.3
Q ss_pred cHHHHHHHHHhcCCceE
Q 044867 25 NFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v 41 (81)
.|+..|...|+++|+++
T Consensus 9 ~fv~~Lk~lLk~rGi~v 25 (90)
T PF02337_consen 9 PFVSILKHLLKERGIRV 25 (90)
T ss_dssp HHHHHHHHHHHCCT---
T ss_pred HHHHHHHHHHHHcCeee
Confidence 79999999999999876
No 79
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=49.54 E-value=52 Score=21.36 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=31.0
Q ss_pred cccEEEeceeccCc--ccHHHHHHHHHhcCCceEEecCCCC-CCCcchHHHHHHH
Q 044867 10 KYDVFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFIDDQLN-RGDEISESLLNAI 61 (81)
Q Consensus 10 ~~dVFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d~~~~-~G~~~~~~i~~aI 61 (81)
...||+.|...|.. ......+.+.|++.|.++-+.. .. .|-.+.++-...+
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~-~~g~gH~i~~~~~~~~ 208 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHE-YPGGGHEISPEELRDL 208 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEE-ETT-SSS--HHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEE-cCCCCCCCCHHHHHHH
Confidence 55799999999965 3568889999999998665543 23 4555555444443
No 80
>KOG3573 consensus Caspase, apoptotic cysteine protease [Cell cycle control, cell division, chromosome partitioning]
Probab=49.48 E-value=12 Score=26.13 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.6
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCce
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQ 40 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~ 40 (81)
|+||++.+...+|+..|.+.|++++-+
T Consensus 231 ~~s~R~~~~gsw~Iq~Lc~~~~~~~~~ 257 (300)
T KOG3573|consen 231 YVSWRDPTKGSWFIQSLCEVLQEYAKS 257 (300)
T ss_pred ceeeecCCCceeeHHHHHHHHHHhcch
Confidence 566666666789999999999988765
No 81
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=49.13 E-value=65 Score=22.11 Aligned_cols=52 Identities=8% Similarity=0.076 Sum_probs=29.5
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhc
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQAS 64 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S 64 (81)
.|.|-|...+-...+...+...|++.|+++-......+|. ++.. ....|..+
T Consensus 137 ~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~-~v~~l~~~ 189 (340)
T cd06349 137 KVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRP-TITRLRDA 189 (340)
T ss_pred EEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCCCCcHHH-HHHHHHhc
Confidence 4566665555444667777788888887766443344443 3443 33444443
No 82
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=49.11 E-value=43 Score=19.93 Aligned_cols=43 Identities=7% Similarity=0.045 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.-+++++.+.++++|+.+-+... + ..++.+.+.+.+ +++++|.
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~---~---~~e~~~~~~~~D--vill~PQ 56 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAG---A---YGSHYDMIPDYD--LVILAPQ 56 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEe---e---HHHHHHhccCCC--EEEEcCh
Confidence 46789999999999997655431 1 123444455554 5555554
No 83
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=48.95 E-value=57 Score=23.86 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=36.0
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISV 68 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I 68 (81)
-.+|+-|-|+.+| |...|.++- -+||.+++|- .|-.+.+.....+.. .|+.+
T Consensus 195 lGfD~~idyk~~d----~~~~L~~a~-P~GIDvyfeN---VGg~v~DAv~~~ln~~aRi~~ 247 (340)
T COG2130 195 LGFDAGIDYKAED----FAQALKEAC-PKGIDVYFEN---VGGEVLDAVLPLLNLFARIPV 247 (340)
T ss_pred cCCceeeecCccc----HHHHHHHHC-CCCeEEEEEc---CCchHHHHHHHhhccccceee
Confidence 3578889996664 555554433 3899999994 777778888887764 45443
No 84
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=48.39 E-value=13 Score=20.70 Aligned_cols=34 Identities=12% Similarity=0.289 Sum_probs=18.8
Q ss_pred HHHhc--CCceEEecCCCCCCCcchHHHHHHHHhcCe
Q 044867 32 STLCR--QNIQTFIDDQLNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 32 ~~L~~--~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~ 66 (81)
..+.. +.+-+++|.+. +|+.....+.+.+....+
T Consensus 40 ~~~~~~~~~Vii~~D~D~-~G~~~a~~i~~~l~~~gi 75 (81)
T PF13662_consen 40 EKLEKKVKEVIIAFDNDK-AGEKAAQKIAKKLLPLGI 75 (81)
T ss_dssp HHHH---SEEEEEEESSH-HHHHHHHHHHHHHG----
T ss_pred HhhhccCceEEEEeCcCH-HHHHHHHHHHHHHHhhcc
Confidence 34444 66778888653 577777777776654333
No 85
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=47.29 E-value=34 Score=23.96 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHhcCCceEEe----cCC-CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 29 HLYSTLCRQNIQTFI----DDQ-LNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 29 ~L~~~L~~~g~~v~~----d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
++.+.|.+.|+.|.. |+. -..|-.+.+...++++++++.|.++.+
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~ 65 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPG 65 (296)
T ss_pred HHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCcc
Confidence 677888999988764 233 356766665667789999999988543
No 86
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=46.28 E-value=47 Score=20.14 Aligned_cols=53 Identities=8% Similarity=0.249 Sum_probs=32.2
Q ss_pred ccEEEeceeccCcccHHHHHHHHHh---cCCceEEecCCCCCCCcchHHHHHHHHhc
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLC---RQNIQTFIDDQLNRGDEISESLLNAIQAS 64 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~---~~g~~v~~d~~~~~G~~~~~~i~~aI~~S 64 (81)
++.+++.+-.+.....+..|+..|+ +.|+.+-+=+. .+...+...|.+.|+++
T Consensus 68 ~~~~~~l~~~~d~~~~A~~Lf~~LR~~D~~~~~~I~ie~-~~~~~~g~Ai~dRL~RA 123 (125)
T PF03481_consen 68 FDIVYSLSLPGDPEEAARNLFAALRELDELGVDLILIEG-PPETGLGLAIMDRLRRA 123 (125)
T ss_dssp GSEEEEEESTTSHHHHHHHHHHHHHHHHHTT-SEEEEEE-ESGCCCHHHHHHHHHHH
T ss_pred cceEEEecCCCCHHHHHHHHHHHHHHHhhcCCCEEEEee-CCCcCcHHHHHHHHHHh
Confidence 3555555444444689999999986 46765433332 23455677888877764
No 87
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=46.17 E-value=48 Score=22.70 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.3
Q ss_pred CCCcccEEEeceeccCc-ccHHHHHHHHHhcCCceEEec
Q 044867 7 NNKKYDVFVSFRGEDTR-DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 7 ~~~~~dVFISy~~~D~~-~~~~~~L~~~L~~~g~~v~~d 44 (81)
+..+.-||++.+..-.+ ..+-..|...|+.+|+++--|
T Consensus 18 ~~~~rtVyv~vrNTSd~~~~l~~~i~~~L~~kGY~vv~~ 56 (215)
T PF05818_consen 18 APSQRTVYVQVRNTSDKDINLESQIISALQAKGYQVVDD 56 (215)
T ss_pred CcccceEEEEEecCCCCccchHHHHHHHHHHCCCEEecC
Confidence 46777899998654433 258889999999999886444
No 88
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=45.59 E-value=29 Score=21.31 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=26.6
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHHhcCeEEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQASAISVI 69 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~~S~~~I~ 69 (81)
.-...|...|++.|+.+..-. +.+. +.+.+.+.++++++++.|.
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~-~v~Dd~~~i~~~l~~~~~~~D~Vit 62 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYG-IVPDDPDAIKEALRRALDRADLVIT 62 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE-EEESSHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHcCCeeeEEE-EECCCHHHHHHHHHhhhccCCEEEE
Confidence 445678888899998765432 1111 3355666666667766554
No 89
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.60 E-value=44 Score=17.02 Aligned_cols=33 Identities=6% Similarity=0.082 Sum_probs=23.1
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~ 42 (81)
...+.+++.....+. .-+..+...|++.|++++
T Consensus 40 ~~~~~~~i~v~~~~~--~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 40 LGEVEVELTLETRGA--EHIEEIIAALREAGYDVR 72 (73)
T ss_pred CceEEEEEEEEeCCH--HHHHHHHHHHHHcCCEEe
Confidence 345667777766552 335788889999998775
No 90
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=44.55 E-value=39 Score=20.62 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCeEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAISV 68 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~~I 68 (81)
-...|...|++.|+++-.-..+.-. +.+.+.+.++++++++.|
T Consensus 20 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~Dlvi 63 (133)
T cd00758 20 NGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVL 63 (133)
T ss_pred hHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEE
Confidence 3456777788899876332212111 224455555555555443
No 91
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=43.88 E-value=87 Score=22.69 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=38.0
Q ss_pred CcccHHHHHHHHHhcCC--ceEEecCC-CCCC-CcchHHHHHHHHhcCeEEEEec
Q 044867 22 TRDNFTSHLYSTLCRQN--IQTFIDDQ-LNRG-DEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 22 ~~~~~~~~L~~~L~~~g--~~v~~d~~-~~~G-~~~~~~i~~aI~~S~~~I~v~S 72 (81)
+.+.|-..|..+|.... -.+|+..+ -..| -.+++.+.++++.+.++++-.|
T Consensus 191 sQ~~Fe~~l~~~l~~~~~~~~i~vE~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~ 245 (345)
T PRK11784 191 SQKDFENLLAEALLKLDPARPIVVEDESRRIGRVHLPEALYEAMQQAPIVVVEAP 245 (345)
T ss_pred chHHHHHHHHHHHHcCCCCCeEEEEeccccccCccCCHHHHHHHhhCCEEEEECC
Confidence 34689999999997543 35777766 5556 5689999999999988766543
No 92
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=43.72 E-value=1e+02 Score=22.01 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=28.8
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
..+|-||..++-.-..++..|...++++|+.++++..
T Consensus 130 ~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TN 166 (322)
T PRK13762 130 PKHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTN 166 (322)
T ss_pred CCEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECC
Confidence 4467888777765555677888889999999999864
No 93
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=43.60 E-value=34 Score=20.06 Aligned_cols=28 Identities=18% Similarity=0.078 Sum_probs=18.5
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++||+++.. ..+-+..+.++++|.++..
T Consensus 51 I~iS~sG~t---~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 51 IAISQSGET---ADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred EEEeCCcCC---HHHHHHHHHHHHcCCeEEE
Confidence 466777665 2356777778888876543
No 94
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=43.54 E-value=50 Score=17.68 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=15.2
Q ss_pred hHHHHHHHHhcCeEEEEecCCCCcCCC
Q 044867 54 SESLLNAIQASAISVIVFSEGYASSIW 80 (81)
Q Consensus 54 ~~~i~~aI~~S~~~I~v~S~~y~~S~w 80 (81)
.+.|....++..+.|+.+.|.| .|.-
T Consensus 5 ~~~L~yka~~~G~~v~~v~~~~-TSq~ 30 (69)
T PF07282_consen 5 RQRLEYKAEEYGIQVVEVDEAY-TSQT 30 (69)
T ss_pred HHHHHHHHHHhCCEEEEECCCC-CccC
Confidence 3445555555666666676666 4543
No 95
>PRK08350 hypothetical protein; Provisional
Probab=43.51 E-value=26 Score=25.60 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=28.9
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCce
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQ 40 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~ 40 (81)
...|.+.+||++-++.+.|+.+|..+|...-|+
T Consensus 279 ~~g~~~vvSHRSGETeD~~IAdLaVa~~agqIK 311 (341)
T PRK08350 279 SERITPILAEAKYESADEALPHLAVGLRCPAML 311 (341)
T ss_pred HcCCeEEeecCCCCCcchhHHHHHHHhCCCccc
Confidence 456889999999999999999999999877676
No 96
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=43.45 E-value=29 Score=25.58 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcC-eEEEEecCCCCc
Q 044867 30 LYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASA-ISVIVFSEGYAS 77 (81)
Q Consensus 30 L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~-~~I~v~S~~y~~ 77 (81)
+...|.+.|+.|++..+ +.. + ...+..+.+...+ ..|..++|||.+
T Consensus 300 ~~~~l~~~~ipVlf~~d~L~~-~-~v~ea~rql~~~dk~~iaFf~pny~~ 347 (360)
T PF07429_consen 300 FWQDLKEQGIPVLFYGDELDE-A-LVREAQRQLANVDKQQIAFFAPNYLQ 347 (360)
T ss_pred HHHHHHhCCCeEEeccccCCH-H-HHHHHHHHHhhCcccceeeeCCchHH
Confidence 45667888999888755 432 2 2233444444444 467789999975
No 97
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=43.37 E-value=66 Score=23.54 Aligned_cols=51 Identities=8% Similarity=0.188 Sum_probs=36.2
Q ss_pred ccCcccHHHHHHHHHhcCCceEEecCC-CCC----CCcchHHHHHHHHhcCeEEEE
Q 044867 20 EDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNR----GDEISESLLNAIQASAISVIV 70 (81)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~----G~~~~~~i~~aI~~S~~~I~v 70 (81)
.|.|+.=+-.|.+.|.++|..|-..+- +.. |-.+.+...++++.++..|+.
T Consensus 311 ~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (388)
T PRK15057 311 DNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISN 366 (388)
T ss_pred CccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEc
Confidence 356667778999999999987654432 221 445677888899999987763
No 98
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=43.19 E-value=27 Score=18.59 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=13.9
Q ss_pred cHHHHHHHHHhcCCceEEecCC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
.-+..+...|+++||.+++...
T Consensus 10 ~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 10 IEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp HHHHHHHHHHHHTT--EE--S-
T ss_pred HHHHHHHHHHHhCCCcEEEECC
Confidence 4467888899999999888765
No 99
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=42.97 E-value=58 Score=21.57 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=33.4
Q ss_pred cHHHHHHHHHhcCCceEEecCC--C-----CC---CCcchHHHHHHHHhcCeEEEEecC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQ--L-----NR---GDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~--~-----~~---G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
...+.|...|.+.|+.++.-.+ . .+ +..|-+.=.+-|.+|+++|+++.+
T Consensus 20 ~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~ 78 (172)
T COG3613 20 ELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDP 78 (172)
T ss_pred HHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCC
Confidence 5677888889999998776522 1 12 122344445667889999999876
No 100
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=42.97 E-value=67 Score=18.64 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCceEEecCC--CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQ--LNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~--~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
....|.++++++|+.+-+... ......+.+ +.|..++.+|++-..
T Consensus 17 aa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~---~~i~~Ad~vi~~~~~ 63 (96)
T cd05569 17 AAEALEKAAKKLGWEIKVETQGSLGIENELTA---EDIAEADAVILAADV 63 (96)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCcCccCcCCH---HHHhhCCEEEEecCC
Confidence 357889999999999877753 222233332 567888888877654
No 101
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=42.91 E-value=32 Score=20.13 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=27.9
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
++||+++.. ...+..+ +.++++|.++-.=. -.++..+ -+.++..+.+-+.+.
T Consensus 58 i~is~sg~~--~~~~~~~-~~ak~~g~~vi~iT-~~~~~~l-------~~~ad~~l~~~~~~~ 109 (131)
T PF01380_consen 58 IIISYSGET--RELIELL-RFAKERGAPVILIT-SNSESPL-------ARLADIVLYIPTGEE 109 (131)
T ss_dssp EEEESSSTT--HHHHHHH-HHHHHTTSEEEEEE-SSTTSHH-------HHHSSEEEEEESSCG
T ss_pred Eeeeccccc--hhhhhhh-HHHHhcCCeEEEEe-CCCCCch-------hhhCCEEEEecCCCc
Confidence 466766665 3444444 48889997753311 0112221 255677777666543
No 102
>PLN02734 glycyl-tRNA synthetase
Probab=42.74 E-value=1.1e+02 Score=24.58 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=36.7
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.++..|+.--.. +.....+..|...|++.|+++-+|.+ +.++...+..+-+ .....|+|
T Consensus 570 P~qVaIlPL~~~-ee~~~~A~eLa~~LR~~GIrVelDd~---~~SIGKRyrrADeiGIPf~ItI 629 (684)
T PLN02734 570 PIKCTVFPLVQN-QQLNAVAKVISKELTAAGISHKIDIT---GTSIGKRYARTDELGVPFAVTV 629 (684)
T ss_pred CcEEEEEEecCC-hHHHHHHHHHHHHHHhCCCEEEEECC---CCCHhHHHHHHHHcCCCEEEEE
Confidence 445556654332 22346789999999999999999863 4455555555543 34444443
No 103
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=42.55 E-value=69 Score=21.29 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
..+.|...|.+.|+...-. .|+.|.+.+-+|+.. ...++-|+.+.|.
T Consensus 123 ~~~~l~~~L~k~Gv~~i~~----~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~ 176 (193)
T COG0576 123 TLDQLLDALEKLGVEEIGP----EGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYK 176 (193)
T ss_pred HHHHHHHHHHHCCCEEeCC----CCCCCCHHHhhheeeecCCCCCCCeEEEEeecCee
Confidence 4567778889999865542 599999999999864 3367778877774
No 104
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=42.48 E-value=41 Score=18.16 Aligned_cols=10 Identities=0% Similarity=0.125 Sum_probs=4.6
Q ss_pred hcCCceEEec
Q 044867 35 CRQNIQTFID 44 (81)
Q Consensus 35 ~~~g~~v~~d 44 (81)
.++.+-+.+.
T Consensus 46 ~~~d~~i~iS 55 (87)
T cd04795 46 RKGDVVIALS 55 (87)
T ss_pred CCCCEEEEEE
Confidence 3444445554
No 105
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=42.18 E-value=85 Score=19.55 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCce-EEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 27 TSHLYSTLCRQNIQ-TFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 27 ~~~L~~~L~~~g~~-v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
..++.+.++..++. +++|. +|- .+.....+..++..|+|.+|.-
T Consensus 80 ~~~~~~~~~~~~~D~iiIDt---aG~--~~~~~~~~~~Ad~~ivv~tpe~ 124 (148)
T cd03114 80 TPEVIRVLDAAGFDVIIVET---VGV--GQSEVDIASMADTTVVVMAPGA 124 (148)
T ss_pred HHHHHHHHHhcCCCEEEEEC---Ccc--ChhhhhHHHhCCEEEEEECCCc
Confidence 34455666666775 56663 663 3566679999999999999974
No 106
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=42.16 E-value=84 Score=20.34 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=28.3
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASA 65 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~ 65 (81)
|-+-|...+....+...+...+++.|+.+-....+..+..-...+.+.|+.+.
T Consensus 143 v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~~~~ 195 (298)
T cd06269 143 VGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIPDGSEDIRRLLKELKSST 195 (298)
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 44445444433456666666677777765544434444333345556666554
No 107
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=42.07 E-value=1.2e+02 Score=21.06 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=38.6
Q ss_pred ccEEEeceeccCc-ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEE
Q 044867 11 YDVFVSFRGEDTR-DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69 (81)
Q Consensus 11 ~dVFISy~~~D~~-~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~ 69 (81)
.=+||=+.+.|.. ..++.+.+++|++.|..+-- +.....=.+.|.+-+.+.++..|
T Consensus 34 ~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~---L~l~~~~~~~Ie~~l~~~d~IyV 90 (224)
T COG3340 34 TIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSE---LHLSKPPLAAIENKLMKADIIYV 90 (224)
T ss_pred eEEEEecCccccchHHHHHHHHHHHHHcCCeeee---eeccCCCHHHHHHhhhhccEEEE
Confidence 4569999888854 24899999999999985432 33444445677777777776544
No 108
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=41.84 E-value=40 Score=19.99 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=18.7
Q ss_pred cccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 10 KYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 10 ~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
+-|+ +||+++.. .-+-+..+.++++|+++..
T Consensus 43 ~~dl~I~iS~SG~t---~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 43 RKTLVIAVSYSGNT---EETLSAVEQAKERGAKIVA 75 (119)
T ss_pred CCCEEEEEECCCCC---HHHHHHHHHHHHCCCEEEE
Confidence 3455 66666665 2344556667788877544
No 109
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=41.21 E-value=1.1e+02 Score=23.03 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=38.5
Q ss_pred CCcccEEEec---eec--cCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 8 NKKYDVFVSF---RGE--DTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 8 ~~~~dVFISy---~~~--D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..+++|+|-- ..+ +.....+..|...|++.|+++-+|.+ +.++...+.++-..---.++++-++
T Consensus 280 iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD~r---~~s~gkk~k~Ae~~GvP~~IiIG~~ 348 (472)
T TIGR00408 280 VAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHIDDR---DNRPGRKFYQWEIKGIPLRIEVGPN 348 (472)
T ss_pred hCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHCCCCEEEEECcc
Confidence 4457887764 221 12246788999999999999999963 2344455555443322244444443
No 110
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=41.14 E-value=80 Score=18.99 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=22.9
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchH
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISE 55 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~ 55 (81)
||+|+|=.+ +-+..|..+.++.|..+-+-. +.+| ++.+
T Consensus 2 iFvS~SMP~---~~L~~l~~~a~~~~~~~V~RG-~~~g-~~~~ 39 (113)
T PF09673_consen 2 IFVSFSMPD---ASLRNLLKQAERAGVVVVFRG-FPDG-SFKP 39 (113)
T ss_pred EEEECCCCH---HHHHHHHHHHHhCCcEEEEEC-CCCC-CHHH
Confidence 799998877 335566666666676544432 5555 5443
No 111
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=40.82 E-value=1.3e+02 Score=23.53 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=39.4
Q ss_pred CcccEEEeceecc-CcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 9 KKYDVFVSFRGED-TRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 9 ~~~dVFISy~~~D-~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
-+++|+|-.-.++ .....+.+|...|+..|+++.+|. .|. +...+..|=+.---.++++-+
T Consensus 456 AP~kV~VIpl~~~~el~~~A~eIa~~LR~~GI~VeiD~---s~s-IGKq~rrADeiGiPf~IIIG~ 517 (551)
T TIGR00389 456 APIKVAVLPLVNKEELKEIAKEIFQALRKTGIRIKYDD---SGT-IGKRYRRADEIGTPFCVTIDF 517 (551)
T ss_pred CCceEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEEC---CCC-HHHHHHHHHHcCCCEEEEECC
Confidence 4677776654432 124578899999999999999985 343 676776665533334444443
No 112
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=40.78 E-value=1e+02 Score=20.05 Aligned_cols=51 Identities=6% Similarity=0.109 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHhc-CCceEEecCCCCCCCcchHHH----------------HHHHHhcCeEEEEecCCCCcC
Q 044867 24 DNFTSHLYSTLCR-QNIQTFIDDQLNRGDEISESL----------------LNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 24 ~~~~~~L~~~L~~-~g~~v~~d~~~~~G~~~~~~i----------------~~aI~~S~~~I~v~S~~y~~S 78 (81)
..+++.+.+.+++ .|..+-+-. +. +.+...+ .+.|.+++ .|++-||.|.-+
T Consensus 16 ~~lA~~ia~g~~~~~G~ev~~~~-l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD-~ii~gsPty~g~ 83 (200)
T PRK03767 16 ETMAEAVAEGAREVAGAEVTIKR-VP--ETVPEEVAKKAGGKTDQAAPVATPDELADYD-AIIFGTPTRFGN 83 (200)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEe-cc--ccCCHHHHHhcCCCcccCCCccCHHHHHhCC-EEEEEecccCCC
Confidence 4678888888887 886642211 11 1111111 46678888 678888888543
No 113
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=40.56 E-value=38 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHhcCCceE---Ee-cCC-CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 24 DNFTSHLYSTLCRQNIQT---FI-DDQ-LNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v---~~-d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
..|+..|.+.|...|+++ ++ ..- +..|+ +|-+.+ +++++|+++-+
T Consensus 123 ~~~l~~L~~~L~~~g~~~ap~~~v~~gRVa~gD----~Ige~L-~a~~vv~LIGE 172 (237)
T PF05985_consen 123 APLLPALLPGLKSAGWSVAPPVLVRQGRVALGD----EIGEAL-GARVVVVLIGE 172 (237)
T ss_dssp HHHHHHHHHHHHTTTS-B---EEEET--TTHHH----HHHHHH-T-SEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCCCcCCeEEEeeceeehhH----HHHHHh-CCCEEEEEEeC
Confidence 478889999999988652 44 332 55555 444444 78888888754
No 114
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=40.16 E-value=41 Score=20.40 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHHhcCeE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQASAIS 67 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~~S~~~ 67 (81)
....|.+.|++.|+.+..-. +.+. +.|.+.+.++++++++.
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~-~v~Dd~~~I~~~l~~~~~~~dli 61 (135)
T smart00852 19 NGPALAELLTELGIEVTRYV-IVPDDKEAIKEALREALERADLV 61 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEE-EeCCCHHHHHHHHHHHHhCCCEE
Confidence 44577788899998754322 2121 22445555555556643
No 115
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=39.72 E-value=1.2e+02 Score=20.84 Aligned_cols=54 Identities=17% Similarity=0.182 Sum_probs=28.4
Q ss_pred cEEEeceecc-CcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCe
Q 044867 12 DVFVSFRGED-TRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAI 66 (81)
Q Consensus 12 dVFISy~~~D-~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~ 66 (81)
.|.+-|...+ -....+..+.+.++++|+++-....+.+| .++.+.+ ..|+.+..
T Consensus 138 ~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v-~~i~~~~~ 193 (344)
T cd06348 138 RVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQI-TAVLNSKP 193 (344)
T ss_pred EEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHH-HHHHhcCC
Confidence 3444443333 22356667777778888876554444444 3444443 45554443
No 116
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=39.55 E-value=69 Score=19.97 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
+..|...|++.|+...+- .|+ ..+.+.+-+++..+..|++...|.
T Consensus 55 L~~L~~~L~~~g~~L~v~----~g~-~~~~l~~l~~~~~~~~V~~~~~~~ 99 (165)
T PF00875_consen 55 LADLQESLRKLGIPLLVL----RGD-PEEVLPELAKEYGATAVYFNEEYT 99 (165)
T ss_dssp HHHHHHHHHHTTS-EEEE----ESS-HHHHHHHHHHHHTESEEEEE---S
T ss_pred HHHHHHHHHhcCcceEEE----ecc-hHHHHHHHHHhcCcCeeEeccccC
Confidence 456777888889876653 344 244555556677777777776664
No 117
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=39.43 E-value=44 Score=18.11 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
.+.|++...+ ..+++.+...|.+-|+..-+.
T Consensus 21 ~~~i~~~~~s--~~ll~~v~~lL~~lGi~~~i~ 51 (77)
T PF14528_consen 21 SVRISISSKS--KELLEDVQKLLLRLGIKASIY 51 (77)
T ss_dssp EEEEEEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEEECC--HHHHHHHHHHHHHCCCeeEEE
Confidence 5678888887 579999999999999876554
No 118
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=39.15 E-value=92 Score=22.39 Aligned_cols=48 Identities=6% Similarity=0.067 Sum_probs=27.0
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHH
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQ 62 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~ 62 (81)
|+++|.... ...+.++.+..+++|+++.+|-. ...-+.+.+.+.+.+.
T Consensus 181 v~v~~~~~~--~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~ 229 (367)
T PLN02379 181 LVLRYGFYN--LEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLE 229 (367)
T ss_pred EEEEcccCC--HHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhh
Confidence 467764322 24556677777889999999843 1111233445555443
No 119
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.92 E-value=46 Score=19.80 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=18.9
Q ss_pred ccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 11 YDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 11 ~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
-|+ +||++++. .-+-+..+.++++|.++-.
T Consensus 48 ~dl~I~iS~SG~t---~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 48 KSVVILASHSGNT---KETVAAAKFAKEKGATVIG 79 (120)
T ss_pred CcEEEEEeCCCCC---hHHHHHHHHHHHcCCeEEE
Confidence 355 66666664 3455667777888876443
No 120
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=38.92 E-value=42 Score=21.02 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHH--hcCe
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQ--ASAI 66 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~--~S~~ 66 (81)
...-|...|++.|+.+-.-. +.+. +.+.+.+.++++ ++++
T Consensus 21 n~~~l~~~l~~~G~~v~~~~-~v~Dd~~~i~~~l~~~~~~~~~Dl 64 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYE-IVPDDKDEIREALIEWADEDGVDL 64 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEE-EcCCCHHHHHHHHHHHHhcCCCCE
Confidence 34457777899997643322 2222 334555555666 4443
No 121
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=38.84 E-value=39 Score=21.90 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=21.8
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
|+-|+..-. -+++++|...|+++|++|..=
T Consensus 7 ivG~k~SGK-TTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 7 IVGYKNSGK-TTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred EEecCCCCh-hhHHHHHHHHHHhCCcEEEEE
Confidence 344544433 489999999999999887654
No 122
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=38.79 E-value=63 Score=20.07 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=19.8
Q ss_pred ccHHHHHHHHHhcCCceEEecCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
+.|-..|.+.|+++|+-|--+..
T Consensus 35 d~Fg~aL~~~LR~~GYaV~e~~~ 57 (121)
T PF07283_consen 35 DPFGQALENALRAKGYAVIEDDP 57 (121)
T ss_pred ChHHHHHHHHHHhcCcEEEecCC
Confidence 48999999999999998877753
No 123
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=38.61 E-value=1e+02 Score=19.43 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhcCC--ceEEecCCCCCCCcchHHHHHHHHh---cCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQN--IQTFIDDQLNRGDEISESLLNAIQA---SAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~g--~~v~~d~~~~~G~~~~~~i~~aI~~---S~~~I~v~S~~y~~S 78 (81)
..+..|.+.|.+++ +.+..- ++-|++..++..+.+.+ -++.|+-+.|.|..+
T Consensus 72 ~q~~~l~~~L~~~~~~~~v~~a--mry~~P~i~~~l~~l~~~g~~~iivlPl~P~~S~~ 128 (159)
T cd03411 72 AQAEALEKALDERGIDVKVYLA--MRYGPPSIEEALEELKADGVDRIVVLPLYPQYSAS 128 (159)
T ss_pred HHHHHHHHHHhccCCCcEEEeh--HhcCCCCHHHHHHHHHHcCCCEEEEEECCcccccc
Confidence 44566667776653 445444 44455544444444433 566777788877654
No 124
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=38.57 E-value=51 Score=18.42 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=26.6
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecC
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
.+--|+|.|--.+- ...-.+|...|.++|+.|+.-+
T Consensus 15 ~k~~v~i~HG~~eh-~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEH-SGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHH-HHHHHHHHHHHHhCCCEEEEEC
Confidence 47778999865553 2456788899999999876543
No 125
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.40 E-value=54 Score=23.12 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=24.1
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
|.|-++........+.+|...|+++|+.++++..
T Consensus 13 i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~ 46 (287)
T PRK14077 13 IGLVTRPNVSLDKEILKLQKILSIYKVEILLEKE 46 (287)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecc
Confidence 5555443333356788888889999999999763
No 126
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=38.23 E-value=62 Score=20.95 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=23.3
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
--+.|.. |+.+.|...|..+|++.|+-|--+..
T Consensus 53 Tt~~l~q---~~~D~Fg~aL~~aLR~~GYaV~e~~~ 85 (151)
T PRK13883 53 TRFELQQ---PTPDAFGQALVKALRDKGYALLEYNP 85 (151)
T ss_pred eEEEEec---CCCcHHHHHHHHHHHHcCeEEEecCC
Confidence 3445533 33348999999999999998876543
No 127
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=38.14 E-value=1.6e+02 Score=21.46 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=38.1
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCe
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~ 66 (81)
..+||+|+.-+.|.. ...-++...|.+..++.-+- +-.+.+...++.+..++...
T Consensus 157 ~~r~ilI~lGGsDpk-~lt~kvl~~L~~~~~nl~iV--~gs~~p~l~~l~k~~~~~~~ 211 (318)
T COG3980 157 PKRDILITLGGSDPK-NLTLKVLAELEQKNVNLHIV--VGSSNPTLKNLRKRAEKYPN 211 (318)
T ss_pred chheEEEEccCCChh-hhHHHHHHHhhccCeeEEEE--ecCCCcchhHHHHHHhhCCC
Confidence 478999999999974 67888888898777443332 22456666677777765443
No 128
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=38.11 E-value=1.2e+02 Score=20.81 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=27.9
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHH
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLN 59 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~ 59 (81)
.|.|-+...+-...+...+..+|++.|+.+-.......+ .++...+.+
T Consensus 137 ~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~ 185 (334)
T cd06327 137 KWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQ 185 (334)
T ss_pred eEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHH
Confidence 344555333333457777788888888887655544444 455554444
No 129
>PRK12435 ferrochelatase; Provisional
Probab=38.06 E-value=1.4e+02 Score=21.23 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=30.4
Q ss_pred cHHHHHHHHHhcC----CceEEecCCCCCCCcchHHHHHHHHh--c-CeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQ----NIQTFIDDQLNRGDEISESLLNAIQA--S-AISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~----g~~v~~d~~~~~G~~~~~~i~~aI~~--S-~~~I~v~S~~y~~S 78 (81)
..+..|.+.|.+. .+.|++- +.-|.+..++..+.+.+ + +++++.+.|.|..+
T Consensus 61 ~qa~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~g~~~iv~lpLyPqyS~~ 119 (311)
T PRK12435 61 EQAKALEKALNEVQDEVEFKLYLG--LKHIEPFIEDAVEQMHNDGIEEAISIVLAPHYSTF 119 (311)
T ss_pred HHHHHHHHHHhhccCCCCceEEEE--ecCCCCCHHHHHHHHHHcCCCeEEEEECCCccccc
Confidence 3455667777653 2666666 44455555555555543 3 44555578988765
No 130
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=37.49 E-value=1.1e+02 Score=21.02 Aligned_cols=54 Identities=11% Similarity=-0.040 Sum_probs=29.5
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASA 65 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~ 65 (81)
.|+|-+...+-.......+...|++.|+++-....+.+++.=.......|...+
T Consensus 134 ~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~ 187 (333)
T cd06358 134 RWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASG 187 (333)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcC
Confidence 455554333222345667777888888886554445556332334444555444
No 131
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=37.25 E-value=46 Score=21.08 Aligned_cols=35 Identities=6% Similarity=0.031 Sum_probs=25.5
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
-..+||.+...|.-..-...+.++|+++|+++-+.
T Consensus 166 ~Pp~~i~~g~~D~l~~~~~~~~~~L~~~gv~v~~~ 200 (211)
T PF07859_consen 166 LPPTLIIHGEDDVLVDDSLRFAEKLKKAGVDVELH 200 (211)
T ss_dssp CHEEEEEEETTSTTHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeeeeccccccchHHHHHHHHHHHHCCCCEEEE
Confidence 44689999888865455677888999999876544
No 132
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.18 E-value=50 Score=19.39 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=17.0
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++||+++.. .. +....+.++++|.++-.
T Consensus 52 i~iS~sG~t--~~-~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 52 IAISNSGET--DE-LLNLLPHLKRRGAPIIA 79 (128)
T ss_pred EEEeCCCCC--HH-HHHHHHHHHHCCCeEEE
Confidence 466777765 23 44555667888876543
No 133
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=37.05 E-value=57 Score=20.66 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCeEEEEecCCCCcC
Q 044867 55 ESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
+.+.+.|.+++ .|++.||.|.-|
T Consensus 60 ~~~~~~i~~AD-~iIi~tP~Y~~s 82 (174)
T TIGR03566 60 ERILQAIESAD-LLVVGSPVYRGS 82 (174)
T ss_pred HHHHHHHHHCC-EEEEECCcCcCc
Confidence 57788888999 667789988765
No 134
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=36.57 E-value=1.2e+02 Score=19.79 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=32.7
Q ss_pred cHHHHHHHHHhcCCceE-EecCC-CCCC--------CcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQNIQT-FIDDQ-LNRG--------DEISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v-~~d~~-~~~G--------~~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
..++.+.+.|.++|..+ .+|=. +..+ .+-...+.+.|++++ .|++.||.|..|
T Consensus 18 ~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD-~iIi~tP~Y~~s 80 (191)
T PRK10569 18 ALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQAD-GLIVATPVYKAS 80 (191)
T ss_pred HHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCC-EEEEECCccCCC
Confidence 45666667777778665 33322 3221 123456778888888 566778888765
No 135
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=36.50 E-value=76 Score=17.34 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=12.7
Q ss_pred chHHHHHHHHhcCeEEEEec
Q 044867 53 ISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 53 ~~~~i~~aI~~S~~~I~v~S 72 (81)
+.+.+.+|-++-+-+++.++
T Consensus 6 ~~~al~~A~~~~kpvlv~f~ 25 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFG 25 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEE
Confidence 45566666666666666664
No 136
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=35.64 E-value=52 Score=23.23 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHhcCCce----EEecCC-CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 24 DNFTSHLYSTLCRQNIQ----TFIDDQ-LNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~----v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
..|+..|.+.|...|++ ++...- +..||.+. +.+ .++++|+++-+
T Consensus 130 ~~~l~al~~~L~~~g~~iap~v~~~qgRValgD~Ig----e~L-~ar~vvvLIGE 179 (260)
T PRK05465 130 EPLLPALLAGLKAAGWSVGPPVFVRQGRVALGDEIG----ELL-GAKVVVVLIGE 179 (260)
T ss_pred HHHHHHHHHHHHHcCCCcCCeEEEecCeehHHHHHH----HHh-CCCEEEEEEec
Confidence 36888888899888753 344433 55565544 444 68888888754
No 137
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=35.59 E-value=76 Score=18.31 Aligned_cols=33 Identities=15% Similarity=0.005 Sum_probs=23.9
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~ 42 (81)
...-.||++..-.+.. -...|.+.|++.|+.+.
T Consensus 47 ~~~a~vlvgi~v~~~~--~~~~l~~~L~~~gy~~~ 79 (91)
T PF00585_consen 47 DDFARVLVGIEVPDAE--DLEELIERLKALGYPYE 79 (91)
T ss_dssp TSCSEEEEEEE-SSTH--HHHHHHHHHTSSS-EEE
T ss_pred CCeeeEEEEEEeCCHH--HHHHHHHHHHHcCCCeE
Confidence 3567899999877643 36899999999999643
No 138
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=35.50 E-value=37 Score=22.56 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
=..+|.+++.++|++|.+|-
T Consensus 53 d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 53 DFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred hhhhhhhccccccceEEEee
Confidence 35789999999999999994
No 139
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=35.24 E-value=71 Score=20.58 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=23.2
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCc---chHHHHHHHHhcCeE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDE---ISESLLNAIQASAIS 67 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~---~~~~i~~aI~~S~~~ 67 (81)
.-...|...|++.|+.+-.-. ..+|+ |.+.+.+++++++++
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~--~v~Dd~~~I~~~l~~~~~~~dlV 62 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVT--VVGDDEDRIAEALRRASERADLV 62 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEE--EeCCCHHHHHHHHHHHHhCCCEE
Confidence 456678888999998763321 22333 344555555545433
No 140
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=35.20 E-value=88 Score=22.27 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=31.7
Q ss_pred cHHHHHHHHHhcCC--ceEEecCCCCCCCcchHHHHHHHHh---cCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQN--IQTFIDDQLNRGDEISESLLNAIQA---SAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~g--~~v~~d~~~~~G~~~~~~i~~aI~~---S~~~I~v~S~~y~~S 78 (81)
..+..|.+.|.+++ +.|+.- +.-|.+..++..+.+.+ .++.++.+.|.|..+
T Consensus 73 ~qa~~l~~~L~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ 129 (316)
T PF00762_consen 73 RQAEALQQRLDERGVDVEVYYA--MRYGPPSIEDALEELKADGVDRIVVLPLYPQYSSS 129 (316)
T ss_dssp HHHHHHHHHHHHH-EEEEEEEE--ESSSSSBHHHHHHHHHHTT-SEEEEEESSSS--TT
T ss_pred HHHHHHHHHHHhcCCCeeEEEE--eccCCCCHHHHHHHHHHcCCCeEEEEeCCCchhHh
Confidence 45667777777664 445554 55566656666666663 566778888888765
No 141
>PLN02924 thymidylate kinase
Probab=35.07 E-value=1.4e+02 Score=19.99 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.0
Q ss_pred cEEEeceeccCc--ccHHHHHHHHHhcCCceE
Q 044867 12 DVFVSFRGEDTR--DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 12 dVFISy~~~D~~--~~~~~~L~~~L~~~g~~v 41 (81)
-.||.+-+-|.. .+.+..|.+.|+.+|+++
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v 47 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA 47 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 469999888843 578999999999999875
No 142
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=34.68 E-value=47 Score=21.93 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=20.9
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
.|||| -+++.-+..+|++.|+++.+.+-
T Consensus 13 ~fiSH------Ldl~r~~eRa~rRA~lp~a~SqG 40 (187)
T PF10105_consen 13 RFISH------LDLMRVFERALRRAGLPVAYSQG 40 (187)
T ss_pred EEech------HHHHHHHHHHhhhcCCCeeecCC
Confidence 36666 35677778889999988888764
No 143
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=34.36 E-value=55 Score=20.69 Aligned_cols=28 Identities=11% Similarity=-0.031 Sum_probs=18.6
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++||+++.. .-+-.+.+.++++|.++..
T Consensus 77 I~iS~sG~t---~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 77 IAISGSGET---ESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred EEEeCCCCc---HHHHHHHHHHHHCCCeEEE
Confidence 467777764 2355666778889987644
No 144
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.12 E-value=34 Score=17.44 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCceEE
Q 044867 27 TSHLYSTLCRQNIQTF 42 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~ 42 (81)
...+.+.|+++|++++
T Consensus 50 ~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 50 IEKAIEVLQERGVELV 65 (65)
T ss_pred HHHHHHHHHHCCceEC
Confidence 5688888999998764
No 145
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=33.94 E-value=1.3e+02 Score=22.65 Aligned_cols=24 Identities=4% Similarity=-0.107 Sum_probs=17.3
Q ss_pred cccHHHHHHHHHhcCCceEEecCC
Q 044867 23 RDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 23 ~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
....+..|.+.++++|+.+-..+.
T Consensus 200 G~~~~~~~~~~~~~~Gi~I~~~~~ 223 (510)
T cd06364 200 GRPGIEKFREEAEERDICIDFSEL 223 (510)
T ss_pred hHHHHHHHHHHHHHCCcEEEEEEE
Confidence 346788888888889987655443
No 146
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=33.83 E-value=1.1e+02 Score=21.64 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=37.7
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
..+.||-|=|++.+. +..+.+...++|+++-+-.. +..-+ .+.|.++.++ .=+|++|||.
T Consensus 67 ~~~~DV~IDFT~P~~----~~~~l~~~~~~~~~lVIGTTGf~~e~--~~~l~~~a~~---v~vv~a~NfS 127 (266)
T COG0289 67 KADADVLIDFTTPEA----TLENLEFALEHGKPLVIGTTGFTEEQ--LEKLREAAEK---VPVVIAPNFS 127 (266)
T ss_pred ccCCCEEEECCCchh----hHHHHHHHHHcCCCeEEECCCCCHHH--HHHHHHHHhh---CCEEEeccch
Confidence 457799999988862 33444555567777766654 43222 3455555555 5578899985
No 147
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.75 E-value=74 Score=18.46 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=17.7
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
.=++||+++.. .-+-.+.+.++++|+++..
T Consensus 63 ~~i~iS~~g~~---~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 63 VVIAISFSGET---KETVEAAEIAKERGAKVIA 92 (139)
T ss_pred EEEEEeCCCCC---HHHHHHHHHHHHcCCeEEE
Confidence 33466666664 2244555677788877544
No 148
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.64 E-value=92 Score=22.65 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=34.6
Q ss_pred cCcccHHHHHHHHHhcCCceEEecCC-CCCCC----cchHHHHHHHHhcCeEEEEecC
Q 044867 21 DTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGD----EISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 21 D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~----~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
|.|+.=+-.|.+.|.++|.+|...+- ..... ...+.+.++++.++.+|+..-.
T Consensus 329 d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~ 386 (411)
T TIGR03026 329 DVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDH 386 (411)
T ss_pred ccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCC
Confidence 55566677999999999988765543 22211 1124666788899987776543
No 149
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=33.63 E-value=92 Score=17.48 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=25.8
Q ss_pred HHHhcCCceEE-ecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 32 STLCRQNIQTF-IDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 32 ~~L~~~g~~v~-~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..|+++|+.+- ....+ ++. .+++.+.|+.-++-+||..+.
T Consensus 24 ~~L~~~Gi~~~~~~~ki--~~~-~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 24 KFLREAGLPVKTLHPKV--HGG-ILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHCCCcceeccCCC--CCC-CHHHHHHhcCCCeEEEEECCC
Confidence 34567888763 22223 222 247888999999988888764
No 150
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=33.63 E-value=95 Score=17.97 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=16.6
Q ss_pred cHHHHHHHHHhcCCceEEecC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~ 45 (81)
-++.++.+.++++|+++-++.
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~ 34 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEA 34 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEE
Confidence 578899999999998765543
No 151
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=33.55 E-value=41 Score=21.49 Aligned_cols=29 Identities=10% Similarity=0.331 Sum_probs=16.5
Q ss_pred EEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 41 TFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 41 v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
||+++.+. +.+. +..+.+++++++|+|=|
T Consensus 144 v~fgE~~~--~~~~-~~~~~~~~~Dl~lviGT 172 (178)
T PF02146_consen 144 VLFGESLP--EEIE-EAIEDAEEADLLLVIGT 172 (178)
T ss_dssp --BTSB-S--HHHH-HHHHHHHH-SEEEEESS
T ss_pred eecCCCCH--HHHH-HHHHHHHcCCEEEEEcc
Confidence 46665443 4554 44558889999988754
No 152
>smart00646 Ami_3 Ami_3.
Probab=33.53 E-value=59 Score=18.94 Aligned_cols=26 Identities=0% Similarity=0.169 Sum_probs=12.9
Q ss_pred CCceEEecCCC---CCCCcchHHHHHHHH
Q 044867 37 QNIQTFIDDQL---NRGDEISESLLNAIQ 62 (81)
Q Consensus 37 ~g~~v~~d~~~---~~G~~~~~~i~~aI~ 62 (81)
+|+.+|....- ..++.+.+.|...+.
T Consensus 26 ~G~~v~~~~~~~~~~~~~~la~~i~~~l~ 54 (113)
T smart00646 26 RGFEVYYYSDKGAIRESRALASIIQKSLV 54 (113)
T ss_pred CEEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 46776665431 234444444444443
No 153
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.50 E-value=1e+02 Score=17.90 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=31.6
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCeEEEE
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAISVIV 70 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~~I~v 70 (81)
-+.++.++..| +.+.+.+....+|+.+.+|- .| ....+...+.++..-..+++
T Consensus 35 a~~~~~~~~~~----~~~~i~~~~~~~~~d~vid~---~g~~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 35 ADHVIDYSDDD----FVEQIRELTGGRGVDVVIDC---VGSGDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp ESEEEETTTSS----HHHHHHHHTTTSSEEEEEES---SSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccccc----cccccccccccccceEEEEe---cCcHHHHHHHHHHhccCCEEEEE
Confidence 35566665554 67777777777899999984 34 43344444445444444443
No 154
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=33.46 E-value=64 Score=20.15 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=20.4
Q ss_pred CcccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 9 KKYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 9 ~~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
.+-|+ .||+++.. ..+-.+.+.++++|.++..
T Consensus 78 ~~~D~~i~iS~sG~t---~~~~~~~~~a~~~g~~ii~ 111 (154)
T TIGR00441 78 QKGDVLLGISTSGNS---KNVLKAIEAAKDKGMKTIT 111 (154)
T ss_pred CCCCEEEEEcCCCCC---HHHHHHHHHHHHCCCEEEE
Confidence 34455 56676664 3456777777888877544
No 155
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=33.41 E-value=97 Score=17.65 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHhcCCceEEecCC-CCCCCcc--hHHHHHHHHhcCeEEEEecCC
Q 044867 32 STLCRQNIQTFIDDQ-LNRGDEI--SESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 32 ~~L~~~g~~v~~d~~-~~~G~~~--~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..|+++|+.+---.+ +..|+.. ..++.+.|++-.+-+||..+.
T Consensus 24 ~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 24 KFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 357788887322222 3323211 125888999999988888765
No 156
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=33.32 E-value=1.9e+02 Score=21.11 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=36.9
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhc-CCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCR-QNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~-~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
...||+|-.-... .-+..+...|++ +|+++-.|. ....+...+..|-+.--..++++.
T Consensus 337 ~~~dvlI~~~~~~---~~a~~ia~~Lr~~~Gi~ve~~~---~~~~l~~~i~~A~~~g~~~iviig 395 (423)
T PRK12420 337 STADVFIIPLGTE---LQCLQIAQQLRSTTGLKVELEL---AGRKLKKALNYANKENIPYVLIIG 395 (423)
T ss_pred CCceEEEEEcCCH---HHHHHHHHHHHhhcCCeEEEec---CCcCHHHHHHHHHHcCCCEEEEEC
Confidence 4578988764332 346788889999 999998874 234556667666553333444443
No 157
>PRK14140 heat shock protein GrpE; Provisional
Probab=33.28 E-value=86 Score=20.99 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
..+.|...|++.|+... + ..|+.|.+++-+||.. ...++-|+.+.|.
T Consensus 123 i~k~l~~~L~k~GV~~i-~---~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~ 176 (191)
T PRK14140 123 VHRQLLEALKKEGVEVI-E---AVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYK 176 (191)
T ss_pred HHHHHHHHHHHCCCEee-C---CCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeE
Confidence 35667788999999753 3 3699999999999863 3557777777774
No 158
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=33.08 E-value=58 Score=21.93 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=31.2
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEec-CCCCCCCcchHHHHHHHHh----cCeEEEEec
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID-DQLNRGDEISESLLNAIQA----SAISVIVFS 72 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d-~~~~~G~~~~~~i~~aI~~----S~~~I~v~S 72 (81)
|.|=|...+....++..+.+.|+++|..+..- ........-...+...|++ ++++|+..+
T Consensus 124 v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~rvvil~~~ 188 (348)
T PF01094_consen 124 VSVVYSDDDYGNSLADSFQDLLRERGGICVAFISVVISSDSDAEELLKKLKEIKSGARVVILCSS 188 (348)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHHTTTTSEEEEESB
T ss_pred eeeeccccccccccchhhhhhhcccccceecccccccccccchhhhhhhhhhccccceeeeeecc
Confidence 55555555433456888888888865433222 1122233333455555544 555555444
No 159
>PF13155 Toprim_2: Toprim-like
Probab=33.07 E-value=56 Score=18.30 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHHHhc---CCceEEecCCCCCCCcchHHHHHHHHhcC
Q 044867 27 TSHLYSTLCR---QNIQTFIDDQLNRGDEISESLLNAIQASA 65 (81)
Q Consensus 27 ~~~L~~~L~~---~g~~v~~d~~~~~G~~~~~~i~~aI~~S~ 65 (81)
...+...|++ +.+-+++|.+ +.|....+.+.+.+.+..
T Consensus 35 ~~~~~~~l~~~~~~~i~l~~DnD-~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 35 EKQQIKFLKENPYKKIVLAFDND-EAGRKAAEKLQKELKEEG 75 (96)
T ss_pred HHHHHHHHHhCCCCcEEEEeCCC-HHHHHHHHHHHHHHHhhC
Confidence 4456666643 3477788865 467777888888777654
No 160
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=32.93 E-value=99 Score=22.62 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+++..+. + .+.|+.|++++.+++.+
T Consensus 298 ~~A~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~IP~ely~AVA~ 344 (358)
T PRK13109 298 LIALKIREIAEENGIPVIEDKPLARSLYDAVQVDQVIPAEFYRPVAQ 344 (358)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCcCCHHHHHHHHH
Confidence 678899999999999998883 2 67999999999988754
No 161
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.78 E-value=1.5e+02 Score=20.45 Aligned_cols=45 Identities=9% Similarity=0.259 Sum_probs=23.5
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCC-cchHHH
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESL 57 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i 57 (81)
|-|-|...+-.......+.+.|+++|+++-....+.+|. ++.+.+
T Consensus 147 v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v 192 (362)
T cd06343 147 IAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQV 192 (362)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeecCCCccHHHHH
Confidence 334443332223556667777777787765544444443 344333
No 162
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=32.43 E-value=65 Score=21.45 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCCcchHHHHHHHHh-cCeEEEEecCCC
Q 044867 49 RGDEISESLLNAIQA-SAISVIVFSEGY 75 (81)
Q Consensus 49 ~G~~~~~~i~~aI~~-S~~~I~v~S~~y 75 (81)
-|+++.....+++++ ++-.++.+||+-
T Consensus 25 ~GkpLI~~v~~al~~~~d~i~v~isp~t 52 (177)
T COG2266 25 CGKPLIDRVLEALRKIVDEIIVAISPHT 52 (177)
T ss_pred CCccHHHHHHHHHHhhcCcEEEEeCCCC
Confidence 578887888888887 888888888874
No 163
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=32.42 E-value=47 Score=23.67 Aligned_cols=33 Identities=33% Similarity=0.440 Sum_probs=20.7
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v 41 (81)
..+.+.+||++-++.+.|+.+|...|...-+++
T Consensus 227 ~g~~~vvS~rsgEteD~~iadLaVg~~a~~iK~ 259 (295)
T PF00113_consen 227 AGWGVVVSHRSGETEDTFIADLAVGLGAGQIKT 259 (295)
T ss_dssp TT-EEEEE--SS--S--HHHHHHHHTT-SEEEE
T ss_pred CCceeeccCCCCCcCchhHHHHHhccCcCeEec
Confidence 457899999999998999999999998765554
No 164
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=32.36 E-value=1.2e+02 Score=22.20 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=26.6
Q ss_pred ceeccCcccHHHHHHHHHhcCCceEEecCCC--CCCC-cchHHHHHHHHh
Q 044867 17 FRGEDTRDNFTSHLYSTLCRQNIQTFIDDQL--NRGD-EISESLLNAIQA 63 (81)
Q Consensus 17 y~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~--~~G~-~~~~~i~~aI~~ 63 (81)
|...+-....+..+.+.++++|+.+-..+.+ .+++ ++. .+...|++
T Consensus 193 ~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~-~~l~~lk~ 241 (472)
T cd06374 193 HTEGNYGESGMEAFKELAAHEGLCIAHSDKIYSNAGEQSFD-RLLRKLRS 241 (472)
T ss_pred EecchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCchHHHH-HHHHHHHh
Confidence 4433323457778888899999877655543 3343 333 34455653
No 165
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=32.32 E-value=57 Score=19.59 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=23.6
Q ss_pred cccEEEeceeccCc----ccHHHHHHHHHhcCCce
Q 044867 10 KYDVFVSFRGEDTR----DNFTSHLYSTLCRQNIQ 40 (81)
Q Consensus 10 ~~dVFISy~~~D~~----~~~~~~L~~~L~~~g~~ 40 (81)
.-|+-|++...+.. ..++..|...|++.|+-
T Consensus 42 DiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~g~i 76 (112)
T PF14792_consen 42 DIDILITHPDPSSVSKKLEGLLEKLVKRLEEKGFI 76 (112)
T ss_dssp SEEEEEEETTCSTTTCSTTCHHHHHHHHHHHTTSE
T ss_pred CeEEEEeCCCcCcchhhHHHHHHHHHHHHHhCCeE
Confidence 45778888666642 47899999999998863
No 166
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=32.32 E-value=1.2e+02 Score=18.26 Aligned_cols=57 Identities=16% Similarity=0.373 Sum_probs=30.9
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEEEecCCC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVIVFSEGY 75 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~v~S~~y 75 (81)
..||-|=|+..+ ....++...+ ++|+++-.-.. | +.++-.+.|++ ++..=++++|||
T Consensus 67 ~~DVvIDfT~p~---~~~~~~~~~~-~~g~~~ViGTT---G--~~~~~~~~l~~~a~~~~vl~a~Nf 124 (124)
T PF01113_consen 67 EADVVIDFTNPD---AVYDNLEYAL-KHGVPLVIGTT---G--FSDEQIDELEELAKKIPVLIAPNF 124 (124)
T ss_dssp H-SEEEEES-HH---HHHHHHHHHH-HHT-EEEEE-S---S--SHHHHHHHHHHHTTTSEEEE-SSS
T ss_pred cCCEEEEcCChH---HhHHHHHHHH-hCCCCEEEECC---C--CCHHHHHHHHHHhccCCEEEeCCC
Confidence 489999998665 3444554444 44877666432 2 23333344554 555777888886
No 167
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=32.31 E-value=87 Score=20.17 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 28 SHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 28 ~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..+.+.|+.-|+.++.-...+. |++.-.+.....+-..-|+|+|.+
T Consensus 89 ~~i~~~l~~~gi~~~~~~g~EA-DDvIatla~~~~~~~~~v~IvS~D 134 (169)
T PF02739_consen 89 PYIKELLEALGIPVLEVPGYEA-DDVIATLAKKASEEGFEVIIVSGD 134 (169)
T ss_dssp HHHHHHHHHTTSEEEEETTB-H-HHHHHHHHHHHHHTTCEEEEE-SS
T ss_pred HHHHHHHHHCCCCEecCCCCcH-HHHHHHHHhhhccCCCEEEEEcCC
Confidence 3455566778998776543543 444556666666666678888864
No 168
>PRK14151 heat shock protein GrpE; Provisional
Probab=32.14 E-value=1.1e+02 Score=20.06 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|++.|+...- ..|+.|.+++-+||.. ...++-|+.+.|.
T Consensus 108 ~k~l~~~L~k~Gv~~i~----~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~ 160 (176)
T PRK14151 108 LKMFQDTLKRYQLEAVD----PHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYL 160 (176)
T ss_pred HHHHHHHHHHCCCEEeC----CCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcE
Confidence 34566788899997643 2599999999999864 3456677777664
No 169
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=32.09 E-value=50 Score=24.11 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=34.3
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceE-EecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQT-FIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v-~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
.++|.+ |.++. ..+-.++.+.+++.+.+. ++-.- +...-.....+.++++.+++.|+.+.+.+.
T Consensus 41 ~~~V~l-w~~~~--~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAVPsq~l 106 (365)
T PTZ00345 41 HNEVRM-WVLEE--IVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFL 106 (365)
T ss_pred CCeEEE-EEecc--cccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEcChHHH
Confidence 356666 32222 122335556665544332 22111 333333356677899999988888776554
No 170
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=32.01 E-value=1.7e+02 Score=19.99 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=29.8
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhc
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQAS 64 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S 64 (81)
|.+-|...+-....+..+...|++.|+++-....+.+| .++...+.+ |...
T Consensus 144 v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~-l~~~ 195 (345)
T cd06338 144 VAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISK-AKAA 195 (345)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHH-HHhc
Confidence 44444333333456778888888999887654445555 456655554 4433
No 171
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=31.94 E-value=1.2e+02 Score=18.16 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCceEEecCC-CCC----CCcchHHHHHHHHhcCe
Q 044867 27 TSHLYSTLCRQNIQTFIDDQ-LNR----GDEISESLLNAIQASAI 66 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~-~~~----G~~~~~~i~~aI~~S~~ 66 (81)
++.+.+.|...|+++.+|-+ +.. |-+ .+.+...+.+..+
T Consensus 2 ~e~f~~~l~~~~i~~lVDVR~~P~S~~~~~~-k~~l~~~l~~~gi 45 (122)
T PF04343_consen 2 IERFYDLLKKNGIRVLVDVRLWPRSRKPGFN-KEDLASFLEEAGI 45 (122)
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCCCCCCC-HHHHHHHHHHCCc
Confidence 35667788999999999955 443 422 4556666655443
No 172
>PRK06298 type III secretion system protein; Validated
Probab=31.88 E-value=1.1e+02 Score=22.38 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+++..+. + .+.|+.|++++.+++.+
T Consensus 290 ~~A~~Ir~iA~e~~VPiven~pLARaLy~~~evg~~IP~ely~AVA~ 336 (356)
T PRK06298 290 LRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPESTYEAIGE 336 (356)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 678899999999999998884 2 67999999999988764
No 173
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=31.82 E-value=86 Score=16.61 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=35.6
Q ss_pred ccHHHHHHHHHhcCCceEEe-cCC--CCCCCcchHHH---HHHHHhcCeEEEEecCCCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFI-DDQ--LNRGDEISESL---LNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~-d~~--~~~G~~~~~~i---~~aI~~S~~~I~v~S~~y~ 76 (81)
..++..|...|.+.|.++.. |+. +..+..+.... ...+..++..++++.++..
T Consensus 13 tt~~~~l~~~l~~~g~~v~~~~d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 13 TTLAANLAAALAKRGKRVLLIDDYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 46888999999988887543 333 22333333333 5777889999999988754
No 174
>PRK10824 glutaredoxin-4; Provisional
Probab=31.73 E-value=78 Score=19.32 Aligned_cols=9 Identities=11% Similarity=0.349 Sum_probs=3.7
Q ss_pred hcCCceEEe
Q 044867 35 CRQNIQTFI 43 (81)
Q Consensus 35 ~~~g~~v~~ 43 (81)
.++.+-+|.
T Consensus 13 ~~~~Vvvf~ 21 (115)
T PRK10824 13 AENPILLYM 21 (115)
T ss_pred hcCCEEEEE
Confidence 344444443
No 175
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=31.52 E-value=1.1e+02 Score=24.42 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
+..+.++++.-+++|+++..|. + .+.|+.|++++.+|+.+
T Consensus 587 D~lAlrIReiAeE~gVPIVENpPLARALY~~veVGq~IP~eLYeAVAe 634 (646)
T PRK12773 587 DDFALLIIRIARENGVPTVEDRLQARGLYEEVELGAEVPQQFYRAIAT 634 (646)
T ss_pred cHHHHHHHHHHHHcCCcEEECHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 3688899999999999998883 2 67999999999998864
No 176
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=31.48 E-value=1e+02 Score=19.76 Aligned_cols=47 Identities=19% Similarity=0.146 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCceEEecCC--CCCCCcchHHHHHHHHhcCe-EEEEecCCC
Q 044867 28 SHLYSTLCRQNIQTFIDDQ--LNRGDEISESLLNAIQASAI-SVIVFSEGY 75 (81)
Q Consensus 28 ~~L~~~L~~~g~~v~~d~~--~~~G~~~~~~i~~aI~~S~~-~I~v~S~~y 75 (81)
..|.+.|+++|+++..-.- ..+-+. .+...+.+++... .|++.|++-
T Consensus 135 ~~l~~~L~~~g~~v~~~~~Y~~~~~~~-~~~~~~~l~~~~~~~iiftS~~~ 184 (239)
T cd06578 135 EDLAEALRERGAEVDEVEVYRTVPPDL-DAELLELLEEGAIDAVLFTSPST 184 (239)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEECCCC-cHHHHHHHHcCCCcEEEEeCHHH
Confidence 4677778888866432221 221121 1455666666554 677777654
No 177
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=31.47 E-value=68 Score=19.50 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=8.2
Q ss_pred HHHHHHHhcCCce-EEec
Q 044867 28 SHLYSTLCRQNIQ-TFID 44 (81)
Q Consensus 28 ~~L~~~L~~~g~~-v~~d 44 (81)
+.|.+.+++++++ +++.
T Consensus 131 ~~l~~~~~~~~id~v~ia 148 (175)
T PF13727_consen 131 DDLPELVREHDIDEVIIA 148 (175)
T ss_dssp GGHHHHHHHHT--EEEE-
T ss_pred HHHHHHHHhCCCCEEEEE
Confidence 4556666666664 4444
No 178
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=31.44 E-value=1.1e+02 Score=21.84 Aligned_cols=34 Identities=6% Similarity=-0.091 Sum_probs=20.1
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
|.|-|...+-....+..+.+.|+++|+.+-..+.
T Consensus 179 vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~ 212 (410)
T cd06363 179 VAFLGSDDEYGRDGLQLFSELIANTGICIAYQGL 212 (410)
T ss_pred EEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEE
Confidence 4344443333345567777888888887655544
No 179
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=31.38 E-value=1.2e+02 Score=17.95 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=15.8
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g 38 (81)
|++.|-+.+........|...|++++
T Consensus 4 llvgHGSr~~~~~~~~~l~~~l~~~~ 29 (103)
T cd03413 4 VFMGHGTDHPSNAVYAALEYVLREED 29 (103)
T ss_pred EEEECCCCchhhhHHHHHHHHHHhcC
Confidence 56777555443456667777776554
No 180
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=31.34 E-value=52 Score=21.39 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCceEEecCC--CCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 28 SHLYSTLCRQNIQTFIDDQ--LNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 28 ~~L~~~L~~~g~~v~~d~~--~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
..|.+.|+++|+.|..-.- . +.....+.+.+.+...++-+++|+
T Consensus 130 ~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ft 175 (231)
T PF02602_consen 130 PDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFT 175 (231)
T ss_dssp HHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEES
T ss_pred HHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEEC
Confidence 3566777778866543221 2 334456677777766666555543
No 181
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=31.30 E-value=1.8e+02 Score=21.14 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcC----CceEEecCCCCCCCcchHHHHHHHHhc---CeEEEEecCCCCcC
Q 044867 26 FTSHLYSTLCRQ----NIQTFIDDQLNRGDEISESLLNAIQAS---AISVIVFSEGYASS 78 (81)
Q Consensus 26 ~~~~L~~~L~~~----g~~v~~d~~~~~G~~~~~~i~~aI~~S---~~~I~v~S~~y~~S 78 (81)
..+.+..+|+++ .++|++- +.-|.++.++..+.+.+. +++++.+.|.|..|
T Consensus 74 ~T~~q~~~L~~~L~~~~~~V~~a--mry~~P~i~~~v~~l~~~gv~~iv~~pLyPqyS~s 131 (320)
T COG0276 74 ITRAQAAALEERLDLPDFKVYLA--MRYGPPFIEEAVEELKKDGVERIVVLPLYPQYSSS 131 (320)
T ss_pred HHHHHHHHHHHHhCCCCccEEEe--ecCCCCcHHHHHHHHHHcCCCeEEEEECCcccccc
Confidence 344455555443 5666666 445566566666666653 45777778877654
No 182
>PF03045 DAN: DAN domain; InterPro: IPR004133 This domain contains 9 conserved cysteines and is extracellular. Therefore the cysteines may form disulphide bridges. This family of proteins has been termed the DAN family [] after the first member to be reported. This family includes DAN, Cerberus and Gremlin. The gremlin protein is an antagonist of bone morphogenetic protein signalling. It is postulated that all members of this family antagonize different TGF beta TGF-beta ligands [].
Probab=31.11 E-value=38 Score=20.81 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 56 SLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 56 ~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
.+.+.-+++. .+.++...+....||
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~~~~C 30 (121)
T PF03045_consen 6 FVLKSSRAAL-VSLPTKLQPLKRDWC 30 (121)
T ss_pred hhhhcCcccc-eeeeccccccccCcc
Confidence 3433333444 678889999999998
No 183
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=31.01 E-value=88 Score=18.66 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=32.2
Q ss_pred cHHHHHHHHHhcCCceEEecCC-------CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQ-------LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~-------~~~G~~~~~~i~~aI~~ 63 (81)
..++++.+.-+++|+.+.-|.. +..|+.|++++-+.+.+
T Consensus 32 ~iAe~II~~Ake~~Vpi~edp~Lv~~L~~lelg~~IPeelY~vVAE 77 (92)
T COG2257 32 EIAEKIIEKAKEHGVPIQEDPLLVELLLKLELGDEIPEELYEVVAE 77 (92)
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHhccccccCCHHHHHHHHH
Confidence 5788888888999999988852 56899999998887654
No 184
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=30.83 E-value=1.9e+02 Score=21.92 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=29.4
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhc-CeEEEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQAS-AISVIV 70 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S-~~~I~v 70 (81)
.-.+.|.+.|++.|++..+- .||.... .+.++|.++ .+-.+.
T Consensus 14 ~~~~~l~~~L~~~GV~~vFg---vpG~~~~-~l~dal~~~~~i~~i~ 56 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTG---IPGGAIL-PLYDALSQSTQIRHIL 56 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEe---CCCcccH-HHHHHHhccCCceEEE
Confidence 35788999999999976553 5887765 467778766 343333
No 185
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=30.83 E-value=47 Score=22.05 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHhcCCceEEec
Q 044867 24 DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d 44 (81)
..|+..|..+|+++|+.|-.-
T Consensus 19 ~~f~~~LaRa~e~RGf~v~~a 39 (182)
T COG4567 19 TPFLRTLARAMERRGFAVVTA 39 (182)
T ss_pred hHHHHHHHHHHhccCceeEee
Confidence 489999999999999987554
No 186
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=30.81 E-value=1e+02 Score=21.89 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=14.5
Q ss_pred ceeccCcccHHHHHHHHHhcCC
Q 044867 17 FRGEDTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 17 y~~~D~~~~~~~~L~~~L~~~g 38 (81)
+|++- .-+.+|+++|+++|
T Consensus 11 ~SGKs---trA~~L~~~l~~~~ 29 (281)
T KOG3062|consen 11 CSGKS---TRAVELREALKERG 29 (281)
T ss_pred CCCch---hHHHHHHHHHHhhc
Confidence 35554 45889999999888
No 187
>PRK14158 heat shock protein GrpE; Provisional
Probab=30.80 E-value=1.7e+02 Score=19.65 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|++.|+...- -..|+.|.+++-+||.. ...++-|+.+.|.
T Consensus 126 ~k~l~~vLek~Gv~~I~---~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~ 179 (194)
T PRK14158 126 LSMLLSTLKKFGVTPVE---AEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYL 179 (194)
T ss_pred HHHHHHHHHHCCCEEec---CCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcE
Confidence 34567788899996432 12599999999999953 3567788888775
No 188
>PRK14161 heat shock protein GrpE; Provisional
Probab=30.71 E-value=1.6e+02 Score=19.39 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|++.|+...- -..|+.|.+++-+||.. ...++-|+.+.|.
T Consensus 108 ~k~l~~vL~~~Gv~~I~---~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~ 161 (178)
T PRK14161 108 KDELDKVFHKHHIEEIK---PEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYK 161 (178)
T ss_pred HHHHHHHHHHCCCEEec---CCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcE
Confidence 45677788999997532 12599999999999964 2457777777764
No 189
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=30.62 E-value=2e+02 Score=20.37 Aligned_cols=53 Identities=8% Similarity=0.182 Sum_probs=29.2
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAI 66 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~ 66 (81)
|++-|...+-.......+.+.+++.|..+-....+.+| .++...+. .|+.+..
T Consensus 164 va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~-~l~~~~~ 217 (369)
T PRK15404 164 IAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGITAGDKDFSALIA-KLKKENV 217 (369)
T ss_pred EEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHH-HHHhcCC
Confidence 44444433222356667777888888887555445556 34554444 4444443
No 190
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=30.53 E-value=50 Score=24.35 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=12.4
Q ss_pred HHhcCeEEEEecCCCCcC
Q 044867 61 IQASAISVIVFSEGYASS 78 (81)
Q Consensus 61 I~~S~~~I~v~S~~y~~S 78 (81)
+-.++.+|+|+|-||++-
T Consensus 27 ~~~ad~ii~vMSGnFvQR 44 (388)
T PF05636_consen 27 ITGADVIIAVMSGNFVQR 44 (388)
T ss_dssp --TSSEEEEEE--TTSBT
T ss_pred cCCCCEEEEEECCCcccC
Confidence 446899999999999874
No 191
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=30.45 E-value=1.3e+02 Score=22.19 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=21.6
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQL 47 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~ 47 (81)
|-+=|...|-....+..|.++++++|+.+-..+.+
T Consensus 177 Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i 211 (458)
T cd06375 177 VSTVASEGDYGETGIEAFEQEARLRNICIATSEKV 211 (458)
T ss_pred EEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEe
Confidence 33334444433467788888888899876555444
No 192
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=30.31 E-value=39 Score=19.47 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=19.7
Q ss_pred cHHHHHHHHHhcCCceE-EecCCCCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQT-FIDDQLNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v-~~d~~~~~G~~~~~~i~~aI~~ 63 (81)
...+.|.+.++++.+-+ .+++++. +.+.+.+.+..++
T Consensus 29 e~~~~l~~l~~~~~~gIIii~e~~~--~~~~~~l~~~~~~ 66 (95)
T PF01990_consen 29 EAEEALKELLKDEDVGIIIITEDLA--EKIRDELDEYREE 66 (95)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEHHHH--TTHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccEEEeeHHHH--HHHHHHHHHHHhc
Confidence 45666666666666653 4443322 4455555555444
No 193
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=29.98 E-value=1.2e+02 Score=19.10 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcC-eEEEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASA-ISVIV 70 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~-~~I~v 70 (81)
..+.|.+.|++.|++..+- .||..+.+ +.+++++.+ +-++.
T Consensus 3 ~~~~l~~~L~~~Gv~~vfg---vpG~~~~~-l~~al~~~~~i~~i~ 44 (172)
T PF02776_consen 3 GAEALAEALKANGVTHVFG---VPGSGNLP-LLDALEKSPGIRFIP 44 (172)
T ss_dssp HHHHHHHHHHHTT-SEEEE---E--GGGHH-HHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEE---EeChhHhH-HHHHhhhhcceeeec
Confidence 3567888899999875553 47777664 778888874 44443
No 194
>PRK13937 phosphoheptose isomerase; Provisional
Probab=29.85 E-value=79 Score=20.46 Aligned_cols=30 Identities=17% Similarity=0.011 Sum_probs=19.4
Q ss_pred ccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 11 YDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 11 ~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
-|+ +||+++.. .-+....+.++++|.++..
T Consensus 107 ~Dl~i~iS~sG~t---~~~~~~~~~ak~~g~~~I~ 138 (188)
T PRK13937 107 GDVLIGISTSGNS---PNVLAALEKARELGMKTIG 138 (188)
T ss_pred CCEEEEEeCCCCc---HHHHHHHHHHHHCCCeEEE
Confidence 355 66676664 3456777777888876544
No 195
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=29.83 E-value=50 Score=17.35 Aligned_cols=16 Identities=6% Similarity=0.017 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCceEEe
Q 044867 28 SHLYSTLCRQNIQTFI 43 (81)
Q Consensus 28 ~~L~~~L~~~g~~v~~ 43 (81)
+.+.+.|+++|+++++
T Consensus 51 ~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 51 DKAKEALKEAGFAVKL 66 (66)
T ss_pred HHHHHHHHHCCCEEEC
Confidence 4677788888988763
No 196
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=29.72 E-value=75 Score=20.10 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=19.3
Q ss_pred CcccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 9 KKYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 9 ~~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
.+-|| .||+++.. .-+-.+.+.++++|.++..
T Consensus 100 ~~~Dv~I~iS~SG~t---~~~i~~~~~ak~~Ga~vI~ 133 (177)
T cd05006 100 QPGDVLIGISTSGNS---PNVLKALEAAKERGMKTIA 133 (177)
T ss_pred CCCCEEEEEeCCCCC---HHHHHHHHHHHHCCCEEEE
Confidence 33455 56666664 2355666777888876544
No 197
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.65 E-value=1.2e+02 Score=17.60 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHhcCCceEEec
Q 044867 24 DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d 44 (81)
.-++.++.+.++++|+++=++
T Consensus 17 S~l~~k~~~~~~~~gi~~~v~ 37 (95)
T TIGR00853 17 SLLVNKMNKAAEEYGVPVKIA 37 (95)
T ss_pred HHHHHHHHHHHHHCCCcEEEE
Confidence 357889999999999876444
No 198
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=29.64 E-value=78 Score=19.41 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=18.2
Q ss_pred cEEEece-eccCcccHHHHHHHHHhcCCceEEecC
Q 044867 12 DVFVSFR-GEDTRDNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 12 dVFISy~-~~D~~~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
++.+||| ++|+ ..+-+|...+..+..-+|.|.
T Consensus 1 ~i~vs~SGGKDS--~v~l~l~~~~~~~~~vv~~dt 33 (174)
T PF01507_consen 1 NIVVSFSGGKDS--TVMLHLAREAGRKVPVVFIDT 33 (174)
T ss_dssp SEEEE--SSHHH--HHHHHHHHHHHTTCEEEEEE-
T ss_pred CeEEEecCCHHH--HHHHHHHHHhcCCCcEEEEec
Confidence 4678887 6774 455566665555555577775
No 199
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=29.58 E-value=50 Score=17.67 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=16.1
Q ss_pred ccHHHHHHHHHhcCCceEEe
Q 044867 24 DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~ 43 (81)
...+.++...|.++||+++.
T Consensus 21 ~Gv~a~i~~~La~~~I~i~~ 40 (65)
T PF13840_consen 21 PGVAAKIFSALAEAGINIFM 40 (65)
T ss_dssp HHHHHHHHHHHHHTTS-ECE
T ss_pred ccHHHHHHHHHHHCCCCEEE
Confidence 46889999999999998765
No 200
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=29.57 E-value=45 Score=21.43 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=17.7
Q ss_pred HHHHHHHhcCeEEEEecCCCCc
Q 044867 56 SLLNAIQASAISVIVFSEGYAS 77 (81)
Q Consensus 56 ~i~~aI~~S~~~I~v~S~~y~~ 77 (81)
+....|++|+++|+-|-+.|.+
T Consensus 68 RT~~li~~aDvvVvrFGekYKQ 89 (144)
T TIGR03646 68 RTRKLIEKADVVIALFGEKYKQ 89 (144)
T ss_pred HHHHHHhhCCEEEEEechHHHH
Confidence 3456789999999999988753
No 201
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=29.51 E-value=1.2e+02 Score=18.10 Aligned_cols=44 Identities=14% Similarity=0.275 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
+.++++|.+.|+++|+++-+-. + +..... ...+...+.+|++.|
T Consensus 11 e~~A~~ia~~l~~~g~~~~~~~-~---~~~~~~-~~~~~~~~~~i~~~s 54 (143)
T PF00258_consen 11 EKMAEAIAEGLRERGVEVRVVD-L---DDFDDS-PSDLSEYDLLIFGVS 54 (143)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE-G---GGSCHH-HHHHCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCceeeec-h---hhhhhh-hhhhhhhceeeEeec
Confidence 4789999999999998643221 1 111212 445677777776665
No 202
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=29.50 E-value=1.8e+02 Score=21.04 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=35.9
Q ss_pred EEEeceeccCcccHHHH--HHHHHhcC------CceEEecCCCCCCCcc-hHHHHHHHHhcCeEEEEecCCC
Q 044867 13 VFVSFRGEDTRDNFTSH--LYSTLCRQ------NIQTFIDDQLNRGDEI-SESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~--L~~~L~~~------g~~v~~d~~~~~G~~~-~~~i~~aI~~S~~~I~v~S~~y 75 (81)
+|+.|...+.. ...- +...+.+. |+.||-.. ...|-.+ .......+.+-.++|.+++|..
T Consensus 176 ~FlNY~W~~~~--l~~s~~~a~~~g~~~~dvy~GiDv~grg-~~~~~~~~~~~~~~~~~~~~~Svalfap~W 244 (339)
T cd06547 176 IFLNYWWTEES--LERSVQLAEGLGRSPYDVYVGVDVWGRG-TKGGGGWNSDKALDEIKKAGLSVALFAPGW 244 (339)
T ss_pred eeEecCCCcch--HHHHHHHHHHcCCCHhHEEEEEEEEcCC-cccCCCCchhhhhhhhcccCeEEEEEcCcc
Confidence 79999988732 2222 23344443 44455322 3323333 3566677889999999999864
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=29.47 E-value=96 Score=17.93 Aligned_cols=48 Identities=29% Similarity=0.385 Sum_probs=22.6
Q ss_pred cHHHHHHHHHhcCCc-eEEecCC--CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 25 NFTSHLYSTLCRQNI-QTFIDDQ--LNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~-~v~~d~~--~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
.+.+.+.+.+++++. -+.+|+- +. .+...+.|..-.++..+.|+++..
T Consensus 74 ~l~~~~~~~l~~~~~~~lviDe~~~l~-~~~~l~~l~~l~~~~~~~vvl~G~ 124 (131)
T PF13401_consen 74 ELRSLLIDALDRRRVVLLVIDEADHLF-SDEFLEFLRSLLNESNIKVVLVGT 124 (131)
T ss_dssp HHHHHHHHHHHHCTEEEEEEETTHHHH-THHHHHHHHHHTCSCBEEEEEEES
T ss_pred HHHHHHHHHHHhcCCeEEEEeChHhcC-CHHHHHHHHHHHhCCCCeEEEEEC
Confidence 344555566665554 4566653 31 233333333333445555555443
No 204
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=29.45 E-value=55 Score=21.93 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCC-------cchHHHHHHHHhcC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGD-------EISESLLNAIQASA 65 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~-------~~~~~i~~aI~~S~ 65 (81)
.....|.+.|+++||.+-.|+....+- .-.+.+.+.+++-.
T Consensus 34 ~VG~~L~~~Le~~Gi~vihd~t~~~~~~y~~sY~~Sr~tv~~~l~~~p 81 (196)
T TIGR02867 34 KVGDRLAKELEEKGIGVIHDKTVHDGLNYEQSYDRSRETVKKALKENK 81 (196)
T ss_pred HHHHHHHHHHHHCCCeEEEeCCccCCccHHHHHHHHHHHHHHHHHHCC
Confidence 567789999999999999998733221 12456777777765
No 205
>PRK13976 thymidylate kinase; Provisional
Probab=29.43 E-value=1.4e+02 Score=19.84 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=22.2
Q ss_pred EEeceeccCc--ccHHHHHHHHHhcC-C-ceEEec
Q 044867 14 FVSFRGEDTR--DNFTSHLYSTLCRQ-N-IQTFID 44 (81)
Q Consensus 14 FISy~~~D~~--~~~~~~L~~~L~~~-g-~~v~~d 44 (81)
||.+-+-|.. .+.+..|.+.|+.+ | .++.+-
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~ 36 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT 36 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe
Confidence 7777777743 57788999999886 6 466544
No 206
>PRK14976 5'-3' exonuclease; Provisional
Probab=29.42 E-value=1e+02 Score=21.57 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCCCcccEEEeceeccCc--c---cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 6 RNNKKYDVFVSFRGEDTR--D---NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~--~---~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
.++++++.|-.|...=.. . .-...+.+.|+.-|+.++.-...+. |++.-.+.........-++|+|.+.
T Consensus 66 ~~~~R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~g~EA-DDviatla~~~~~~g~~v~IvS~Dk 139 (281)
T PRK14976 66 RKTFRHQLYDEYKQGRKKTPESLISQIPLLKKILKLAGIKWEEQPGYEA-DDLIGSLAKKLSKQNITVLIYSSDK 139 (281)
T ss_pred CCcccccccHHHhcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecCCcCH-HHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 356777777777443321 1 2234555567788998776543333 2333355555555666778888753
No 207
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=29.31 E-value=1.4e+02 Score=21.82 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=32.8
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+++..|. + .+.|+.|++++.+++.+
T Consensus 289 ~~A~~I~~~A~~~~vPi~~~~~LAr~Ly~~~~~g~~IP~~ly~aVA~ 335 (347)
T TIGR00328 289 ELALKIKEIARENNVPIVENPPLARALYRQVEIGQEIPPELYKAVAE 335 (347)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 678899999999999999884 2 57899999999888764
No 208
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=29.24 E-value=1.5e+02 Score=18.45 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHH-HhcCeEEEE
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAI-QASAISVIV 70 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI-~~S~~~I~v 70 (81)
..++..|.+.|++.|++|.+.++-...-.+.+....+- ..++++|-|
T Consensus 27 l~ia~~l~~~L~~~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isi 74 (175)
T PF01520_consen 27 LDIALRLKKELEKHGIKVYLTRDNDSDVSLQERAALANSWGADLFISI 74 (175)
T ss_dssp HHHHHHHHHHHHHTTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEE
Confidence 35788888899999999998753211113443333332 346655544
No 209
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=29.17 E-value=57 Score=20.66 Aligned_cols=26 Identities=12% Similarity=0.464 Sum_probs=21.2
Q ss_pred CCC-cchHHHHHHHHhcCeEEEEecCC
Q 044867 49 RGD-EISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 49 ~G~-~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
||. .+..++..+++.++.+|+|+..+
T Consensus 78 PG~~~f~~~~~~~~~~~D~ailvVda~ 104 (188)
T PF00009_consen 78 PGHEDFIKEMIRGLRQADIAILVVDAN 104 (188)
T ss_dssp SSSHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred ccccceeecccceecccccceeeeecc
Confidence 773 46778889999999999998764
No 210
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=29.09 E-value=53 Score=24.07 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=45.5
Q ss_pred ccEEEeceeccCcccHHHHHHHHHh-cCCceEEecC-------C-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCC
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLC-RQNIQTFIDD-------Q-LNRGDEISESLLNAIQASAISVIVFSEGYASSIW 80 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~-~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~w 80 (81)
+|-||.+--.|+. +.-|...|+ ..|.++|.|. . ++.-+.+.+.|.++++.-..-.+.+.|++--..|
T Consensus 245 ~dk~ig~GV~dtd---~~~~~~~~~~~~~~n~~~~~~~~~~~~~~VEsveEI~~rI~~ale~i~~e~lwVNPDCGLK~~ 320 (344)
T PRK06052 245 TDTFLRVGVARTD---IFSLIAILNEKYGTNAWKDKEYLQEIVTELETPEVIKKRLEKAYSIFGDRIKYVGPDCGLGSW 320 (344)
T ss_pred cCCceEEeEEEch---hhcchhhhhhhcccccccchhhccccCCCCCCHHHHHHHHHHHHHhCChhhEEECCCCCCCCC
Confidence 5667776555541 123444443 4688999993 3 5666777888888888888888888998765544
No 211
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=28.97 E-value=1.8e+02 Score=19.44 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHhcCCceEEecCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
..|+..|..+++++|+.+.+|..
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTn 75 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETA 75 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECC
Confidence 46788888888899999999875
No 212
>PRK02947 hypothetical protein; Provisional
Probab=28.95 E-value=74 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=21.5
Q ss_pred cccE--EEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 10 KYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 10 ~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
+-|| +|||++.. ..+-.+.+.++++|+++-.=
T Consensus 106 ~~Dv~i~iS~sG~t---~~~i~~~~~a~~~g~~vI~i 139 (246)
T PRK02947 106 PGDVLIVVSNSGRN---PVPIEMALEAKERGAKVIAV 139 (246)
T ss_pred CCCEEEEEeCCCCC---HHHHHHHHHHHHCCCEEEEE
Confidence 4465 66777765 34667778888999876543
No 213
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=28.94 E-value=84 Score=20.54 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=29.9
Q ss_pred CcccE--EEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 9 KKYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 9 ~~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
.+-|+ +||+++.. .-+-...+.++++|.++..=.. .++.++. +.|+..|.+-++
T Consensus 110 ~~~Dv~I~iS~SG~t---~~~i~~~~~ak~~g~~iI~iT~-~~~s~l~-------~~ad~~l~~~~~ 165 (192)
T PRK00414 110 REGDVLLGISTSGNS---GNIIKAIEAARAKGMKVITLTG-KDGGKMA-------GLADIEIRVPHF 165 (192)
T ss_pred CCCCEEEEEeCCCCC---HHHHHHHHHHHHCCCeEEEEeC-CCCChhH-------HhCCEEEEeCCC
Confidence 34455 56777664 3456777777888877655221 1112221 356777766663
No 214
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=28.85 E-value=58 Score=20.42 Aligned_cols=18 Identities=6% Similarity=0.122 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCeEEEEec
Q 044867 55 ESLLNAIQASAISVIVFS 72 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S 72 (81)
+++.++++++++.++|+.
T Consensus 11 ~~~~~~i~~aD~il~v~D 28 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRD 28 (171)
T ss_pred HHHHHHHhhCCEEEEEee
Confidence 344444455554444443
No 215
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=28.79 E-value=1.7e+02 Score=19.27 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=22.0
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcC-CceEE
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQ-NIQTF 42 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~-g~~v~ 42 (81)
.=+||-..+.+. ..++....++|++- |+.+-
T Consensus 33 ~i~~IptAs~~~-~~~~~~~~~a~~~l~G~~~~ 64 (212)
T cd03146 33 KVLFVPTASGDR-DEYTARFYAAFESLRGVEVS 64 (212)
T ss_pred eEEEECCCCCCH-HHHHHHHHHHHhhccCcEEE
Confidence 345888877754 36788888888888 87543
No 216
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=28.73 E-value=48 Score=22.37 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCcccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 8 NKKYDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 8 ~~~~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
...-|+||+|+... ...+|+..|.+.|.++|
T Consensus 161 p~~~d~lv~ysT~pG~~a~r~~~~gS~fi~~l~~~l~~~~ 200 (243)
T cd00032 161 PVEADFLVAYSTVPGYVSWRNTKKGSWFIQSLCQVLRKYA 200 (243)
T ss_pred CCcccEEEEecCCCCeEeecCCCCCCEeHHHHHHHHHHhC
Confidence 34458888876443 23689999999998766
No 217
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=28.64 E-value=1.3e+02 Score=17.59 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=23.8
Q ss_pred HHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 29 HLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 29 ~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
-+...|+++|++|..-. ...+ .+++.+++.+.+--++.+|-
T Consensus 18 ~~~~~l~~~G~~V~~lg---~~~~-~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 18 IVARALRDAGFEVIDLG---VDVP-PEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred HHHHHHHHCCCEEEECC---CCCC-HHHHHHHHHHcCCCEEEEec
Confidence 34445788898874321 1111 34677777776666666654
No 218
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=28.60 E-value=1.2e+02 Score=21.39 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCceE-----EecCCCCCCCcchHHHHHHHHhcCe--EEEEecCCCCc
Q 044867 28 SHLYSTLCRQNIQT-----FIDDQLNRGDEISESLLNAIQASAI--SVIVFSEGYAS 77 (81)
Q Consensus 28 ~~L~~~L~~~g~~v-----~~d~~~~~G~~~~~~i~~aI~~S~~--~I~v~S~~y~~ 77 (81)
+-|..+|.++||+| +--+.. ..+..++..+++++.. .|++|||.-+.
T Consensus 146 dil~kkL~~~G~~Vds~~VY~T~~h---p~~~~~~~~alk~~~~~d~ivfFSPsgv~ 199 (260)
T KOG4132|consen 146 DILPKKLHDKGIRVDSCEVYETREH---PDGFKQFIHALKECGFIDWIVFFSPSGVK 199 (260)
T ss_pred HHHHHHHHhCCceeeEEEEEeeeec---ccHHHHHHHHHHhcCCcceEEEECcchHH
Confidence 45667788898874 222213 2345688888888743 78899986544
No 219
>PRK00536 speE spermidine synthase; Provisional
Probab=28.46 E-value=1.6e+02 Score=20.51 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=35.3
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHh
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~ 63 (81)
..+|||=|.=+.-+ ..|...++.+|+..|+-+.--+. +.. ......+.+.+++
T Consensus 137 ~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi~v~Qs~sp~~~-~~~~~~i~~~l~~ 190 (262)
T PRK00536 137 IKKYDLIICLQEPD--IHKIDGLKRMLKEDGVFISVAKHPLLE-HVSMQNALKNMGD 190 (262)
T ss_pred CCcCCEEEEcCCCC--hHHHHHHHHhcCCCcEEEECCCCcccC-HHHHHHHHHHHHh
Confidence 35799999776544 47899999999999997766554 222 2223455555554
No 220
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=28.44 E-value=1.5e+02 Score=18.31 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=28.7
Q ss_pred cHHHHHHHHHh--cCCceEEecCCCCCCCcchHHHHHHHHh----cCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLC--RQNIQTFIDDQLNRGDEISESLLNAIQA----SAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~--~~g~~v~~d~~~~~G~~~~~~i~~aI~~----S~~~I~v~S~~y~~S 78 (81)
..+..|.+.|. ...+.+.+-.+.-+|+=+.+.+.++|++ --.-|+|+.+.|+..
T Consensus 45 ~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G~~~i~v~p~gF~~D 104 (135)
T cd00419 45 ETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSD 104 (135)
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCccccc
Confidence 34555666665 4445544443333343344455555433 234688888877654
No 221
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=28.41 E-value=2.2e+02 Score=20.39 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=36.1
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~v 70 (81)
...||+|-+-..+. ..-+.++...|+++|+++-.+- ....+.+.+..|-+. ++.+|+|
T Consensus 321 ~~~~vlV~~~~~~~-~~~~~~i~~~Lr~~gi~v~~~~---~~~~l~k~~~~a~~~g~~~~i~i 379 (397)
T TIGR00442 321 SSPDVYVVPLGEEA-ELEALKLAQKLRKAGIRVEVDL---GGRKLKKQLKYADKLGARFAVIL 379 (397)
T ss_pred CCCcEEEEEeCHHH-HHHHHHHHHHHHhCCCeEEEeC---CCCCHHHHHHHHHHcCCCEEEEE
Confidence 45788886544332 2346688889999999986653 234556666666553 4444444
No 222
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=28.14 E-value=49 Score=21.21 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=17.2
Q ss_pred HHHHHHhcCeEEEEecCCCCc
Q 044867 57 LLNAIQASAISVIVFSEGYAS 77 (81)
Q Consensus 57 i~~aI~~S~~~I~v~S~~y~~ 77 (81)
....|++|+++|+.|-+.|.+
T Consensus 66 T~~li~~aDvVVvrFGekYKQ 86 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQ 86 (141)
T ss_pred HHHHHhhCCEEEEEechHHHH
Confidence 445689999999999988853
No 223
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=27.96 E-value=50 Score=22.34 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHhcCCceEEe
Q 044867 24 DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~ 43 (81)
.+.+..|.+.|.++|+.+++
T Consensus 37 STiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 37 STIANALEEKLFAKGYHVYL 56 (197)
T ss_pred HHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999998765
No 224
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=27.89 E-value=1.6e+02 Score=18.42 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=19.8
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
||+|+|=.+ .-+..|..+.++.|..+-+
T Consensus 3 vFvS~SMP~---~~Lk~l~~~a~~~g~~~Vl 30 (130)
T TIGR02742 3 VFVSFSMPE---PLLKQLLDQAEALGAPLVI 30 (130)
T ss_pred EEEEcCCCH---HHHHHHHHHHHHhCCeEEE
Confidence 799998877 3456777777777765544
No 225
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=27.87 E-value=1.3e+02 Score=21.36 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCeEEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAISVI 69 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~~I~ 69 (81)
.+..|.+.|+++|+.+-..+....+ .++...|.+.-...+++|+
T Consensus 164 ~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~~iii~ 208 (405)
T cd06385 164 AMEGLYMELKKNNITVVDLVFEEDDLINYTTLLQDIKQKGRVIYV 208 (405)
T ss_pred HHHHHHHHHHhCCeEEEEeeccCCchhhHHHHHHHHhhcceEEEE
Confidence 4678888999999887554323233 3455444443334444443
No 226
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=27.85 E-value=89 Score=22.49 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=24.3
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHH
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLN 59 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~ 59 (81)
+-++.|.++++..||++|+- +-+++++.+.+.+
T Consensus 87 n~le~v~pAa~~~g~kv~lG--iw~tdd~~~~~~~ 119 (305)
T COG5309 87 NTLENVLPAAEASGFKVFLG--IWPTDDIHDAVEK 119 (305)
T ss_pred hhhhhhHHHHHhcCceEEEE--EeeccchhhhHHH
Confidence 45678888888899988887 5666766666653
No 227
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=27.73 E-value=1.1e+02 Score=16.39 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHhcCCceEEe
Q 044867 24 DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~ 43 (81)
..++..+...|.++|+++-+
T Consensus 13 ~~~~a~if~~La~~~InvDm 32 (67)
T cd04914 13 NDLQQRVFKALANAGISVDL 32 (67)
T ss_pred ccHHHHHHHHHHHcCCcEEE
Confidence 46788899999998876533
No 228
>PLN02449 ferrochelatase
Probab=27.70 E-value=2.1e+02 Score=21.97 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=32.3
Q ss_pred cHHHHHHHHHhcCC--ceEEecCCCCCCCcchHHHHHHHHh---cCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQN--IQTFIDDQLNRGDEISESLLNAIQA---SAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~g--~~v~~d~~~~~G~~~~~~i~~aI~~---S~~~I~v~S~~y~~S 78 (81)
.-+..|.++|.+.| ++|++- +.-|.++.++..+.+.+ -+++++-+-|.|..+
T Consensus 164 ~Qa~~Lq~~L~~~~~~~~V~~a--MRY~~P~iedal~~l~~~G~~~iVvLPLYPQyS~s 220 (485)
T PLN02449 164 EQAEALAKALEAKNLPAKVYVG--MRYWHPFTEEAIDQIKADGITKLVVLPLYPQFSIS 220 (485)
T ss_pred HHHHHHHHHHhccCCCeEEEEh--hhcCCCCHHHHHHHHHhcCCCeEEEEECCcccccc
Confidence 34556777776665 566665 44455555566666653 456777787877654
No 229
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=27.60 E-value=1.1e+02 Score=19.92 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=22.8
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
...|+|+=-++.- .|. .|...|+++|.+|..
T Consensus 104 ~~iD~~vLvSgD~---DF~-~Lv~~lre~G~~V~v 134 (160)
T TIGR00288 104 PNIDAVALVTRDA---DFL-PVINKAKENGKETIV 134 (160)
T ss_pred CCCCEEEEEeccH---hHH-HHHHHHHHCCCEEEE
Confidence 4678888776653 464 788888888888766
No 230
>PHA02558 uvsW UvsW helicase; Provisional
Probab=27.55 E-value=83 Score=23.61 Aligned_cols=45 Identities=11% Similarity=0.208 Sum_probs=31.6
Q ss_pred cccEEEeceeccC--cccHHHHHHHHHhcCCceEEecCCCCCCCcch
Q 044867 10 KYDVFVSFRGEDT--RDNFTSHLYSTLCRQNIQTFIDDQLNRGDEIS 54 (81)
Q Consensus 10 ~~dVFISy~~~D~--~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~ 54 (81)
.+|..|+.-..+. ...+...|...|+++|+.+++|.+...|+.+.
T Consensus 47 ~~~~~i~~~~~~~~~prG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 93 (501)
T PHA02558 47 GWDGKIRLLDYNGLLPYGLVGQLKKFAKNRGYSIWVDPRIEENEDIS 93 (501)
T ss_pred CCCceEEEeccCCCcccchHHHHHHHHHhcCCeEecCcccccCCCCC
Confidence 4555666544221 14788899999999999999987666666554
No 231
>PRK14139 heat shock protein GrpE; Provisional
Probab=27.53 E-value=1.2e+02 Score=20.13 Aligned_cols=46 Identities=22% Similarity=0.349 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~------S~~~I~v~S~~y~ 76 (81)
...|...|+++|+.. ++ ..|+.|.+++-+||.. ...++-|+.+.|.
T Consensus 117 ~k~l~~vL~k~Gv~~-I~---~~G~~FDP~~HEAv~~~~~~~~~gtVi~V~qkGY~ 168 (185)
T PRK14139 117 LKQLTSAFEKGRVVE-IN---PVGEKFDPHQHQAISMVPAEQEPNTVVAVLQKGYT 168 (185)
T ss_pred HHHHHHHHHHCCCce-eC---CCCCCCChHHhheeeeecCCCCcCEEEEEeeCCcE
Confidence 357778889999975 33 2699999999998864 3456667766664
No 232
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=27.51 E-value=1.1e+02 Score=20.70 Aligned_cols=69 Identities=10% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCCCcccEEEeceeccCc-----ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 6 RNNKKYDVFVSFRGEDTR-----DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~-----~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
.+++++++|-.|...=.. ......+.+.|+.-|+.++.-...+. |++.-.+..........++|+|.+.
T Consensus 61 ~~~~R~~l~p~YK~~R~~~p~~l~~q~~~~~~~l~~~gi~~i~~~~~EA-DD~ia~la~~~~~~g~~~~I~S~Dk 134 (240)
T cd00008 61 GKTFRHELYPEYKANRKKMPEELREQIPLIKELLEALGIPVLEIEGYEA-DDVIGTLAKKAEAEGYKVVIVSGDK 134 (240)
T ss_pred CCcccccccHHHHcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecCCcCH-HHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 356777777777543211 13345666677788997765432332 2233344444445556778888653
No 233
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=27.50 E-value=48 Score=19.16 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCceEE
Q 044867 27 TSHLYSTLCRQNIQTF 42 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~ 42 (81)
+..+.++|+++|+.|-
T Consensus 10 Ls~v~~~L~~~GyeVv 25 (80)
T PF03698_consen 10 LSNVKEALREKGYEVV 25 (80)
T ss_pred chHHHHHHHHCCCEEE
Confidence 4588999999999764
No 234
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=27.49 E-value=55 Score=24.87 Aligned_cols=29 Identities=3% Similarity=0.247 Sum_probs=22.6
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++.|+...+ .+++.+|...|.++|++|-.
T Consensus 6 IvG~sgSGK-TTLiekLI~~L~~rG~rVav 34 (452)
T PRK14495 6 IIGWKDAGK-TGLVERLVAAIAARGFSVST 34 (452)
T ss_pred EEecCCCCH-HHHHHHHHHHHHhCCCeEEE
Confidence 455654443 58999999999999999876
No 235
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=27.35 E-value=76 Score=21.97 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=20.6
Q ss_pred cccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 10 KYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 10 ~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
+-|| +|||++.- .-+-+..+.++++|+++-.
T Consensus 89 ~~d~~i~iS~sG~t---~~~~~~~~~ak~~g~~vI~ 121 (321)
T PRK11543 89 SRDVMLFISYSGGA---KELDLIIPRLEDKSIALLA 121 (321)
T ss_pred CCCEEEEEeCCCCc---HHHHHHHHHHHHcCCeEEE
Confidence 3455 67777775 3456777788889977544
No 236
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.29 E-value=1.5e+02 Score=21.44 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=33.2
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+++.-+. + .+.|+.|++++.+++.+
T Consensus 288 ~~A~~Ir~iA~e~~VPiven~pLAR~Ly~~~evg~~IP~ely~aVA~ 334 (342)
T TIGR01404 288 AQALAVRAYAEEAGIPVVRDIPLARQLYRTARVGQYIPEELFEAVAE 334 (342)
T ss_pred HHHHHHHHHHHHcCCCEeeCHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 688899999999999998884 2 67899999999988764
No 237
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=27.24 E-value=88 Score=19.37 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=16.9
Q ss_pred cchHHHHHHHHhcCeEEEEecCC
Q 044867 52 EISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 52 ~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.+..++..+++.++.+|+|+..+
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~ 75 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGAN 75 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCC
Confidence 45556666778899999888765
No 238
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=27.20 E-value=1.7e+02 Score=19.66 Aligned_cols=42 Identities=31% Similarity=0.329 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHhcCC--ceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 23 RDNFTSHLYSTLCRQN--IQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 23 ~~~~~~~L~~~L~~~g--~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
.+.|+..|.+.|++.| +.|+... .+... .++..+--.+|+||
T Consensus 10 yDSFtyNLv~yl~~lg~~v~V~rnd------~~~~~---~~~~~~pd~iviSP 53 (191)
T COG0512 10 YDSFTYNLVQYLRELGAEVTVVRND------DISLE---LIEALKPDAIVISP 53 (191)
T ss_pred ccchHHHHHHHHHHcCCceEEEECC------ccCHH---HHhhcCCCEEEEcC
Confidence 3579999999999877 5555553 12211 34444445667776
No 239
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=27.17 E-value=1.4e+02 Score=23.50 Aligned_cols=39 Identities=8% Similarity=0.194 Sum_probs=33.3
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.=+++|+++..|. + .+.|+.|++++.+++.+
T Consensus 552 ~~A~~Ir~~A~e~~VPive~~~LAR~Ly~~~evg~~IP~ely~aVA~ 598 (609)
T PRK12772 552 YVALKIKEIAKENDVPIIENKPLARLIYKKVEIDQEIPQDMYQAVAE 598 (609)
T ss_pred HHHHHHHHHHHHCCCcEEeCHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 678899999999999999884 2 67999999999988764
No 240
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=27.07 E-value=1.5e+02 Score=17.96 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=25.4
Q ss_pred cHHHHHHHHHhc----CCceEEecCC-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCR----QNIQTFIDDQ-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~----~g~~v~~d~~-~~~G~~~~~~i~~aI~~ 63 (81)
.|...|...|.+ ++.-+-.-+. +.++.+|+++|..+|.+
T Consensus 65 ~F~~aL~~~L~~~~~~h~~vILv~~AVv~Ga~DIT~eI~~~i~~ 108 (111)
T PF09677_consen 65 RFMQALEASLAEYQAEHHVVILVSPAVVSGAPDITDEIRADIAR 108 (111)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEechHHhCCCCCCcHHHHHHHHH
Confidence 577777777754 3333444445 66667899999888754
No 241
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=27.02 E-value=1.8e+02 Score=19.87 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=26.3
Q ss_pred HHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 31 YSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 31 ~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
.+++++.|+++-. +..-...|.+++.+=.+.|+++|-
T Consensus 102 ~~~a~~~gv~~~~------~~~~~~~l~~~l~~G~~~lvLIS~ 138 (207)
T PF11814_consen 102 REEAEQAGVPVHY------RPLSLADLRAALAAGAIVLVLIST 138 (207)
T ss_pred HHHHHHCCCceec------CCCCHHHHHHHHHCCCEEEEEEee
Confidence 3356678887543 333467899999998888888874
No 242
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=27.01 E-value=1.6e+02 Score=21.45 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+++..|. + .+.|+.|++++.+++.+
T Consensus 289 ~~A~~Ir~iA~e~~VPiven~pLARaLY~~~~vg~~IP~ely~aVA~ 335 (349)
T PRK12721 289 AQALHIVKLAERNGIPVVENIPLARALFKEVECGDYIPETLFEPVAA 335 (349)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCcCCHHHHHHHHH
Confidence 678899999999999998773 2 67999999999888764
No 243
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=26.95 E-value=65 Score=20.30 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=21.0
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++.+++..+ .+++.+|...|+++|++|-.
T Consensus 4 i~G~~gsGK-Ttl~~~l~~~l~~~G~~V~v 32 (155)
T TIGR00176 4 IVGPKNSGK-TTLIERLVKALKARGYRVAT 32 (155)
T ss_pred EECCCCCCH-HHHHHHHHHHHHhcCCeEEE
Confidence 455655543 47889999999989987644
No 244
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=26.81 E-value=80 Score=16.96 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=14.2
Q ss_pred HHhcCeEEEEecCCCCcCCC
Q 044867 61 IQASAISVIVFSEGYASSIW 80 (81)
Q Consensus 61 I~~S~~~I~v~S~~y~~S~w 80 (81)
+-+++++++|+||+=....|
T Consensus 37 Lc~~~v~~iv~sp~g~~~~~ 56 (59)
T cd00120 37 LCDAEVAVIVFSPSGKLYEF 56 (59)
T ss_pred ccCCcEEEEEECCCCCcccc
Confidence 34578899999997555444
No 245
>PRK14164 heat shock protein GrpE; Provisional
Probab=26.78 E-value=1.4e+02 Score=20.44 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=35.0
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-----cCeEEEEecCCCC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-----SAISVIVFSEGYA 76 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-----S~~~I~v~S~~y~ 76 (81)
.+...|...|+++|+..+- ..|+.|.+++-+||.. -..++-|+.+.|.
T Consensus 149 ~i~~~l~~vL~k~Gve~I~----~~Ge~FDP~~HEAV~~~~~~~~~~V~~V~qkGY~ 201 (218)
T PRK14164 149 AFSDKLTNVLAGLKVEKFG----EEGDAFDPEIHEAVQDLSSGDEKVLGTVLRKGYR 201 (218)
T ss_pred HHHHHHHHHHHHCCCEEeC----CCCCCCChhHhheeeeecCCCCCEeeEEeeCCcE
Confidence 4667888899999998643 2599999999999853 2234447777774
No 246
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=26.76 E-value=88 Score=20.17 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHhcCCceEEecCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
..|...|..+|+..|+-|--|..
T Consensus 68 d~Fg~aL~~aLr~~GYaVvtd~k 90 (145)
T PRK13835 68 SPFGQALEAALKGWGYAVVTDQK 90 (145)
T ss_pred cHHHHHHHHHHHhcCeEEeeccc
Confidence 48999999999999998876643
No 247
>PRK08156 type III secretion system protein SpaS; Validated
Probab=26.75 E-value=1.3e+02 Score=22.18 Aligned_cols=40 Identities=10% Similarity=-0.010 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
+..+.++++.-+++|+.+.-+. + .+.|+.|+.++.+++.+
T Consensus 283 d~~A~~IreiA~e~~VPiven~pLARaLY~~vevg~~IP~ely~AVA~ 330 (361)
T PRK08156 283 NQRALAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSFVSLEDLDEVLR 330 (361)
T ss_pred cHHHHHHHHHHHHCCCCEeeCHHHHHHHHHhCCCCCcCCHHHHHHHHH
Confidence 3688899999999999998884 2 67899999999988764
No 248
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.74 E-value=1.9e+02 Score=20.65 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=31.5
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHh--cCeEEEEec
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQA--SAISVIVFS 72 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~--S~~~I~v~S 72 (81)
|-+-|. .|....-+.+|.++++++|+.+-...-...+ +.+.+ +.+.|++ ++++|+-++
T Consensus 120 v~iIYd-~d~g~~~lq~l~~~~~~~~~~I~~~~~~~~~~~d~~~-~L~~ik~~~~rvIVl~~~ 180 (364)
T cd06390 120 FVYIYD-ADRGLSVLQKVLDTAAEKNWQVTAVNILTTTEEGYRK-LFQDLDKKKERLIVVDCE 180 (364)
T ss_pred EEEEEe-CCccHHHHHHHHHhhhccCceeeEEEeecCChHHHHH-HHHhccccCCeEEEEECC
Confidence 334453 3334567788888999999776543323333 34443 3344553 444554443
No 249
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=26.73 E-value=1e+02 Score=15.82 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=5.7
Q ss_pred HHHhcCCceEEecCC
Q 044867 32 STLCRQNIQTFIDDQ 46 (81)
Q Consensus 32 ~~L~~~g~~v~~d~~ 46 (81)
..+++....+.+-..
T Consensus 31 ~~f~~~~~~vli~t~ 45 (82)
T smart00490 31 EKFNNGKIKVLVATD 45 (82)
T ss_pred HHHHcCCCeEEEECC
Confidence 333333334444333
No 250
>PRK03094 hypothetical protein; Provisional
Probab=26.72 E-value=52 Score=19.08 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=13.2
Q ss_pred HHHHHHHHhcCCceEE
Q 044867 27 TSHLYSTLCRQNIQTF 42 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~ 42 (81)
+..+.++|+++|+.|-
T Consensus 10 Ls~i~~~L~~~GYeVv 25 (80)
T PRK03094 10 LTDVQQALKQKGYEVV 25 (80)
T ss_pred cHHHHHHHHHCCCEEE
Confidence 4578999999999874
No 251
>PF07454 SpoIIP: Stage II sporulation protein P (SpoIIP); InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation []. SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, [, , ]), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers [].
Probab=26.61 E-value=95 Score=21.82 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCCcccEEEeceeccCcc-----------------------cHHHHHHHHHhcCCceEEecCC
Q 044867 7 NNKKYDVFVSFRGEDTRD-----------------------NFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 7 ~~~~~dVFISy~~~D~~~-----------------------~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
...+..|+|=|.|..+.. ..-+.|.+.|+++||.+-.|..
T Consensus 70 ~~~~~~V~IYhTH~~EsY~p~~~~~~~~~~~~~~~~~~nV~~VG~~L~~~Le~~Gi~v~h~~t 132 (268)
T PF07454_consen 70 TSGKPQVLIYHTHSTESYLPSDGLKSVPGPGGATDEEVNVVKVGDRLAQELEKYGIGVIHDKT 132 (268)
T ss_pred CCCCCEEEEEeCCCccccccccccccCCCCCccccccchHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 345667888766665321 2346788899999999999986
No 252
>PLN02972 Histidyl-tRNA synthetase
Probab=26.58 E-value=2.4e+02 Score=23.04 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=36.8
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
...||||.+-+.+.. ...-++...|++.|+++-++. ..++.+.+..|-+.--..++|+.
T Consensus 667 ~~~dVlV~s~g~~~l-~~alkia~~LR~aGI~aE~~~----~~kl~kq~~~A~k~gi~~vVIIG 725 (763)
T PLN02972 667 TETEVLVSIIGDDKL-ALAAELVSELWNAGIKAEYKV----STRKAKHLKRAKESGIPWMVLVG 725 (763)
T ss_pred CCCcEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEeC----CCCHHHHHHHHHHCCCCEEEEEC
Confidence 346999988554432 345678889999999887642 34456666666554333444443
No 253
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=26.51 E-value=1.3e+02 Score=19.16 Aligned_cols=52 Identities=10% Similarity=0.280 Sum_probs=39.8
Q ss_pred CcccHHHHHHHHHhcCCceE------EecCC-------CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 22 TRDNFTSHLYSTLCRQNIQT------FIDDQ-------LNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 22 ~~~~~~~~L~~~L~~~g~~v------~~d~~-------~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
.+..++.++...++++|+++ +++++ ...|+++..++.+-|-...+.++|+--
T Consensus 14 V~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleG 78 (135)
T COG0105 14 VKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEG 78 (135)
T ss_pred hhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEec
Confidence 44578899999999999874 33322 237889999999988888888888753
No 254
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=26.45 E-value=1.6e+02 Score=17.88 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=38.6
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh--cCeEEEEec
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA--SAISVIVFS 72 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~--S~~~I~v~S 72 (81)
....|.|.|-.......+...+...|...|++|+.= |..-.+.+..++.+ +.-.|+|-.
T Consensus 39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~-----g~~~tP~~~~~~~~~~~~ggi~iTa 99 (137)
T PF02878_consen 39 NGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDI-----GLVPTPALSFAIRQLNADGGIMITA 99 (137)
T ss_dssp TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEE-----EEB-HHHHHHHHHHHTESEEEEE--
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccc-----cccCcHHhhhhccccccceeeEEEe
Confidence 456788888655555678888888889999988753 34446777777776 555555543
No 255
>PRK11633 cell division protein DedD; Provisional
Probab=26.43 E-value=56 Score=22.44 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=20.2
Q ss_pred eceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 16 SFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 16 Sy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
||+..|. +..|...|+..|++.+..
T Consensus 156 af~n~~~----A~~l~~kL~~~G~~Ay~~ 180 (226)
T PRK11633 156 ALKNADK----VNEIVAKLRLSGYRVYTV 180 (226)
T ss_pred ccCCHHH----HHHHHHHHHHCCCeeEEE
Confidence 5766662 789999999999998885
No 256
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=26.34 E-value=1.7e+02 Score=18.11 Aligned_cols=21 Identities=10% Similarity=0.112 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCceEEecCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~ 46 (81)
...++.+.+++.|+.+++|-.
T Consensus 72 ~~~~~~~~~~~~~~~v~~D~~ 92 (196)
T cd00287 72 AVLDALEEARRRGVPVVLDPG 92 (196)
T ss_pred HHHHHHHHHHHcCCeEEEeCC
Confidence 456677777778888888865
No 257
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=26.15 E-value=1.2e+02 Score=20.00 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=26.5
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG 50 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G 50 (81)
.--||+.+.+-. -+..+...|+++|-.+|++-++-.|
T Consensus 20 ~~~vfLl~g~I~----~l~~~v~~~~~~gK~vfVHiDli~G 56 (175)
T PF04309_consen 20 VEVVFLLTGDIG----NLKDIVKRLKAAGKKVFVHIDLIEG 56 (175)
T ss_dssp SSEEEE-SEECC----CHHHHHHHHHHTT-EEEEECCGEET
T ss_pred CCEEEEEcCcHH----HHHHHHHHHHHcCCEEEEEehhcCC
Confidence 345788885554 2678888999999999999885555
No 258
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=26.15 E-value=1.9e+02 Score=18.82 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=31.1
Q ss_pred ccEEEece-eccCcccHHHHHHHHHhcCCce-EEecCCCCCCCcchHHH--HHHHH-hcCeEEEEecCC
Q 044867 11 YDVFVSFR-GEDTRDNFTSHLYSTLCRQNIQ-TFIDDQLNRGDEISESL--LNAIQ-ASAISVIVFSEG 74 (81)
Q Consensus 11 ~dVFISy~-~~D~~~~~~~~L~~~L~~~g~~-v~~d~~~~~G~~~~~~i--~~aI~-~S~~~I~v~S~~ 74 (81)
-+|.+||| ++|+ ..+-+|...+... ++ +|+| .|..+.+.+ .+.++ .=.+-|.++.+.
T Consensus 14 ~~~~~s~SgGKDS--~Vll~L~~~~~~~-~~v~f~D----Tg~efpeT~efv~~~~~~~~l~i~~~~~~ 75 (212)
T TIGR00434 14 GHLVYSTSFGIQG--AVLLDLVSKISPD-IPVIFLD----TGYHFPETYELIDELTERYPLNIKVYKPD 75 (212)
T ss_pred CCEEEEecCCHHH--HHHHHHHHhcCCC-CcEEEec----CCCCCHHHHHHHHHHHHHhCCceEEECCc
Confidence 36899997 6773 5666776655433 44 5666 466655443 22222 223346666654
No 259
>PRK03673 hypothetical protein; Provisional
Probab=26.07 E-value=98 Score=22.95 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCc---chHHHHHHHHhcCeEE
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDE---ISESLLNAIQASAISV 68 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~---~~~~i~~aI~~S~~~I 68 (81)
...|...|.+.|+.+..-. ..||+ +.+.+.+++++++++|
T Consensus 23 ~~~la~~L~~~G~~v~~~~--~v~D~~~~i~~~l~~a~~~~DlVI 65 (396)
T PRK03673 23 AAWLADFFFHQGLPLSRRN--TVGDNLDALVAILRERSQHADVLI 65 (396)
T ss_pred HHHHHHHHHHCCCEEEEEE--EcCCCHHHHHHHHHHHhccCCEEE
Confidence 4577888999998865432 23443 4444455555566443
No 260
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=25.99 E-value=1.8e+02 Score=18.33 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=22.7
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceEEecC
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
.|++++-+....++..|...++++|++++++.
T Consensus 64 gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~T 95 (147)
T TIGR02826 64 CVLFLGGEWNREALLSLLKIFKEKGLKTCLYT 95 (147)
T ss_pred EEEEechhcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 46676666333556677778888899988875
No 261
>PRK10325 heat shock protein GrpE; Provisional
Probab=25.98 E-value=1.3e+02 Score=20.15 Aligned_cols=46 Identities=9% Similarity=0.223 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|...|+... + ..|+.|.+.+-+||.. ...+|-|+-+.|.
T Consensus 127 ~~~l~~~L~~~Gv~~i-~---~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~ 179 (197)
T PRK10325 127 LKSMLDVVRKFGVEVI-A---ETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYT 179 (197)
T ss_pred HHHHHHHHHHCcCeee-C---CCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcE
Confidence 4567778889999864 3 3699999999999863 2457777777764
No 262
>smart00642 Aamy Alpha-amylase domain.
Probab=25.92 E-value=70 Score=20.46 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
-.+.|.++++++|++|.+|-
T Consensus 71 d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 71 DFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 35788899999999999983
No 263
>PRK13973 thymidylate kinase; Provisional
Probab=25.70 E-value=2e+02 Score=18.81 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=23.6
Q ss_pred EEEeceeccCc--ccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~ 43 (81)
.||.+-+-|.. .+.++.|.+.|+.+|+++..
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~ 36 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLV 36 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 57888777743 47788999999999987643
No 264
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.56 E-value=81 Score=16.60 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=16.4
Q ss_pred cHHHHHHHHHhcCCceEEec
Q 044867 25 NFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d 44 (81)
.+..++..+|.+.|+++.+-
T Consensus 15 ~~~~~i~~aL~~~~I~v~~i 34 (65)
T cd04918 15 LILERAFHVLYTKGVNVQMI 34 (65)
T ss_pred cHHHHHHHHHHHCCCCEEEE
Confidence 57789999999999988553
No 265
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=25.56 E-value=47 Score=15.74 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCce
Q 044867 27 TSHLYSTLCRQNIQ 40 (81)
Q Consensus 27 ~~~L~~~L~~~g~~ 40 (81)
+..|.+.|+++|++
T Consensus 6 v~eLk~~l~~~gL~ 19 (35)
T PF02037_consen 6 VAELKEELKERGLS 19 (35)
T ss_dssp HHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHCCCC
Confidence 56899999999985
No 266
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=25.56 E-value=1.4e+02 Score=20.12 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=31.2
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhc
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQAS 64 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S 64 (81)
..|.|-+...+........+...|++.|+++-....+.+|..=...+...|...
T Consensus 136 ~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~ 189 (343)
T PF13458_consen 136 KKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSA 189 (343)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHT
T ss_pred cEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhc
Confidence 456666644433356677788888899998644444555543233455556543
No 267
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=25.50 E-value=1.7e+02 Score=21.37 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=32.9
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+.+.-|. + .+.|+.|++++.+++.+
T Consensus 296 ~~A~~i~~~A~~~~vpi~~~~~LAr~Ly~~~~~g~~Ip~~~~~aVA~ 342 (359)
T PRK05702 296 EVALKIREIAREHNVPIVENPPLARALYATVEIGQEIPEELYKAVAE 342 (359)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence 678899999999999999884 2 67899999999888754
No 268
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=25.49 E-value=71 Score=21.62 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=22.1
Q ss_pred CCcccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 8 NKKYDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 8 ~~~~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
...-|.||+|+... ...+|+..|.+.|++++
T Consensus 157 p~~~D~li~ysT~pG~va~r~~~~gS~fi~~L~~~l~~~~ 196 (241)
T smart00115 157 PVEADFLAAYSTTPGYVSWRNPTRGSWFIQSLCQVLKEYA 196 (241)
T ss_pred CCcCcEEEEEeCCCCeEeecCCCCCchHHHHHHHHHHHcC
Confidence 34457888876443 23689999999998854
No 269
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.48 E-value=1.4e+02 Score=20.24 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 28 SHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 28 ~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
..|...|+..|+... + ..|+.|.+.+-+||.. ...+|-|+.+.|.
T Consensus 125 k~l~~vLek~GV~~I-~---~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~ 176 (209)
T PRK14141 125 RAMLNALERHGVKKL-D---PEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYT 176 (209)
T ss_pred HHHHHHHHHCCCEEE-C---CCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcE
Confidence 477788999999764 3 2599999999988864 3456777777664
No 270
>PRK06893 DNA replication initiation factor; Validated
Probab=25.39 E-value=1.9e+02 Score=19.23 Aligned_cols=64 Identities=16% Similarity=0.359 Sum_probs=31.8
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCc-chHHH---HHHHHhcCeEEEEecCCCCcCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDE-ISESL---LNAIQASAISVIVFSEGYASSIW 80 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~-~~~~i---~~aI~~S~~~I~v~S~~y~~S~w 80 (81)
+|++....+ .+...+.+.+++..+ +++|+= ...|+. +...+ .+.+.+....++|++.+...+.|
T Consensus 71 ~y~~~~~~~---~~~~~~~~~~~~~dl-LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 71 IYIPLSKSQ---YFSPAVLENLEQQDL-VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred EEeeHHHhh---hhhHHHHhhcccCCE-EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 477764332 234444455544433 677763 333432 22233 33445555667777766654433
No 271
>PRK14148 heat shock protein GrpE; Provisional
Probab=25.29 E-value=1.5e+02 Score=19.89 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
..+.|...|++.|+... + ..|+.|.+.+-+||.. ...+|=|+.+.|.
T Consensus 126 i~k~l~~vL~k~Gv~~I-~---~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~ 179 (195)
T PRK14148 126 TAKMLVDILKKNGVEEL-D---PKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYM 179 (195)
T ss_pred HHHHHHHHHHHCCCEEe-C---CCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcE
Confidence 35678888999999753 3 2599999999999864 3557777777774
No 272
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.14 E-value=1.7e+02 Score=24.42 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=41.6
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecC--------C-CC------CCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD--------Q-LN------RGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~--------~-~~------~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
+-.||||.+..|+ .-+..+...|.+.|++++--+ . +. ..+. .++|.+.|++-.+.++|-++.
T Consensus 937 ~~~~~~~~~~~~k--~~~~~~~~~~~~~g~~~~at~gt~~~l~~~gi~~~~v~~~~~~-~~~~~~~~~~~~~~~vin~~~ 1013 (1068)
T PRK12815 937 YGTIFISVRDEDK--PEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQEG-SPSLLERIKQHRIVLVVNTSL 1013 (1068)
T ss_pred CCeEEEEecccch--HHHHHHHHHHHHCCCEEEEccHHHHHHHhCCCeEEEEeeccCC-CccHHHHHHcCCeEEEEECCC
Confidence 3459999998885 345577777777787765432 1 11 1111 257889999999999988774
No 273
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=24.99 E-value=1.4e+02 Score=21.83 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=33.8
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCc-eEEecCC-CCCCCcchHHHHHHHHh--cCeEEEEecC
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNI-QTFIDDQ-LNRGDEISESLLNAIQA--SAISVIVFSE 73 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~-~v~~d~~-~~~G~~~~~~i~~aI~~--S~~~I~v~S~ 73 (81)
|++|-.-| .-.+=+.++|.+.|+ ++-++.. -+........|.+.+.. -++.|.+.+|
T Consensus 38 ~veHpaLd---~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp 98 (322)
T COG2984 38 FVEHPALD---AAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATP 98 (322)
T ss_pred eecchhHH---HHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCH
Confidence 45554444 567778889999999 6666644 33334445566666643 4445555443
No 274
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.96 E-value=1.7e+02 Score=21.70 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+.+..|. . .+.|+.|++++.+|+.+
T Consensus 296 ~~A~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~IP~ely~AVA~ 342 (386)
T PRK12468 296 AVALRIRELGAEHRIPLLEAPPLARALFRHSEVGQHIPATLYAAVAE 342 (386)
T ss_pred HHHHHHHHHHHHcCCcEEeCHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 678899999999999998884 2 67899999999888764
No 275
>PLN02735 carbamoyl-phosphate synthase
Probab=24.95 E-value=1.7e+02 Score=24.59 Aligned_cols=62 Identities=8% Similarity=0.106 Sum_probs=41.8
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecC--------C-CC------CCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD--------Q-LN------RGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~--------~-~~------~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
+-.||||.+..|+ .-+..+...|.+.|++++--+ . +. ..+. .++|.+.|++=.+-++|-+|+
T Consensus 972 ~g~vliSv~d~~K--~~~~~~a~~L~~lG~~i~aT~GTa~~L~~~Gi~~~~v~~~~~~-~~~~~~~i~~~~i~~vin~~~ 1048 (1102)
T PLN02735 972 SGTVFISLNDLTK--PHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKLHEG-RPHAGDMLANGQIQLMVITSS 1048 (1102)
T ss_pred CCeEEEEEecCCc--hhHHHHHHHHHHCCCEEEEccHHHHHHHHCCCceEEEeeccCC-CccHHHHHHcCCeEEEEECCC
Confidence 3469999998774 345577777777777765431 1 11 1111 257889999999999998876
No 276
>PLN02837 threonine-tRNA ligase
Probab=24.93 E-value=2.6e+02 Score=21.79 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=35.1
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
-+.+|.|---.++. ...+..|...|+++|++|-++. ++.+...+.+|-. +....|+|
T Consensus 515 aP~qV~IIpi~~~~-~~~A~~Ia~~Lr~~GirVev~~----~~slgkkir~A~~~gip~~IiI 572 (614)
T PLN02837 515 APVQARVLPVTDNE-LEYCKEVVAKLKAKGIRAEVCH----GERLPKLIRNAETQKIPLMAVV 572 (614)
T ss_pred CCccEEEEEeChHH-HHHHHHHHHHHHHCCCEEEEeC----CCCHHHHHHHHHHcCCCEEEEE
Confidence 35566555433322 4678899999999999988853 2445556655543 34444443
No 277
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=24.88 E-value=90 Score=21.15 Aligned_cols=31 Identities=6% Similarity=0.217 Sum_probs=18.8
Q ss_pred EEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 41 TFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 41 v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
||++|.+.. .+.....+.+++++++|+|=|.
T Consensus 155 v~FGE~lp~--~~~~~~~~~~~~aDlllvvGTS 185 (235)
T cd01408 155 VFFGESLPS--RFFSHMEEDKEEADLLIVIGTS 185 (235)
T ss_pred EECCCCCCH--HHHHHHHHHHhcCCEEEEECCC
Confidence 455554322 2334556677889999988553
No 278
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=24.81 E-value=57 Score=19.25 Aligned_cols=22 Identities=14% Similarity=0.090 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHhcCCceEEecC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
...+.++...|.++||.++..-
T Consensus 38 ~~v~~~~~~~L~~~g~P~Y~hv 59 (89)
T PF08444_consen 38 SQVMYHLAQYLHKLGFPFYGHV 59 (89)
T ss_pred HHHHHHHHHHHHHCCCCeEeeh
Confidence 3456677788999999988873
No 279
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=24.64 E-value=1.3e+02 Score=21.70 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCce--EEecCCC-CCCCcchHHHHHHHHhcCeEEEEecCCCCcCC
Q 044867 27 TSHLYSTLCRQNIQ--TFIDDQL-NRGDEISESLLNAIQASAISVIVFSEGYASSI 79 (81)
Q Consensus 27 ~~~L~~~L~~~g~~--v~~d~~~-~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~ 79 (81)
...+..+|+++-.+ +=...+| ....+..+.+.+-..+++++|+|=++|..+|.
T Consensus 173 t~~Iv~~l~~r~p~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~ 228 (294)
T COG0761 173 TAEIVAALKERFPKIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSN 228 (294)
T ss_pred HHHHHHHHHHhCccccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHH
Confidence 45666666655432 1111113 23355556666666789999999999998874
No 280
>PRK08105 flavodoxin; Provisional
Probab=24.58 E-value=94 Score=19.43 Aligned_cols=21 Identities=10% Similarity=-0.116 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHhcCCceEEec
Q 044867 24 DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d 44 (81)
+.++++|...|++.|+.+.+.
T Consensus 16 e~~A~~l~~~l~~~g~~~~~~ 36 (149)
T PRK08105 16 LLVAEEAEAILTAQGHEVTLF 36 (149)
T ss_pred HHHHHHHHHHHHhCCCceEEe
Confidence 579999999999999887654
No 281
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.52 E-value=1.8e+02 Score=19.75 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|++.|+...- -..|+.|.+++-+|+.. ...++-|+.+.|.
T Consensus 140 ~k~l~~vL~k~GVe~I~---~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~ 193 (208)
T PRK14154 140 LDLLHNTLAKHGVQVIN---PNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQ 193 (208)
T ss_pred HHHHHHHHHHCCCEEec---CCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcE
Confidence 46677788999997532 13599999999999853 3457777777764
No 282
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.52 E-value=1.3e+02 Score=21.22 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHhcCCceEEecC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
...+..+.+.|+++|+.+.+..
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~ 39 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGP 39 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEec
Confidence 3567788888999999988754
No 283
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=24.37 E-value=1.7e+02 Score=17.52 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCeEEEEecCC
Q 044867 55 ESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S~~ 74 (81)
++|.+.|.+=.+.+||.+|+
T Consensus 60 ~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 60 QQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred hHHHHHHHcCceeEEEEcCC
Confidence 67999999999999999886
No 284
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=24.36 E-value=2.5e+02 Score=19.77 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC---CcchHHHHHHHHhcCeEEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG---DEISESLLNAIQASAISVI 69 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G---~~~~~~i~~aI~~S~~~I~ 69 (81)
....+.++|++.|+.+-. ..+.++ .++...|.+.-...+++|+
T Consensus 162 ~~~~~~~~~~~~g~~v~~-~~~~~~~~~~d~~~~l~~ik~~~~vii~ 207 (396)
T cd06373 162 TLEGVYTVLKEENITVSD-FPFDEDKELDDYKELLRDISKKGRVVIM 207 (396)
T ss_pred HHHHHHHHHhhcCceeeE-EeecCCccccCHHHHHHHHHhcCcEEEE
Confidence 456777888888877542 234444 4666555444344443333
No 285
>COG4868 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.29 E-value=1.2e+02 Score=22.71 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=31.9
Q ss_pred cHHHHHHHHHhcCCceEEecCCC----------CCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQL----------NRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~----------~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.-+..++..|+++|++++++.-+ ...+-+. ..+-|+.++-.|||-.|.
T Consensus 120 p~a~aF~~rLEr~Gikvy~H~~ikGYPtD~~~IvS~EG~G--kN~YieTtrnlvVVTAPG 177 (493)
T COG4868 120 PAADAFRTRLERNGIKVYLHYPIKGYPTDVDHIVSDEGMG--KNAYIETTRNLVVVTAPG 177 (493)
T ss_pred hhHHHHHHHHHhcCcceEEecccCCCCCchhheeCcccCC--ccchhhcccceEEEeCCC
Confidence 45677889999999999987522 1111111 224477888888887764
No 286
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=24.29 E-value=52 Score=19.93 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=12.7
Q ss_pred ccHHHHHHHHHh-cCCce
Q 044867 24 DNFTSHLYSTLC-RQNIQ 40 (81)
Q Consensus 24 ~~~~~~L~~~L~-~~g~~ 40 (81)
++|+.+|.++|. ++|+.
T Consensus 60 keFA~eLFdALaRrr~i~ 77 (100)
T PF08414_consen 60 KEFAGELFDALARRRGIK 77 (100)
T ss_dssp HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 589999999995 56775
No 287
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=24.28 E-value=54 Score=19.04 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=18.6
Q ss_pred ccHHHHHHHHHhcCCceEEec--CCCCCCCc
Q 044867 24 DNFTSHLYSTLCRQNIQTFID--DQLNRGDE 52 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d--~~~~~G~~ 52 (81)
...+...+.+|+++|+++--- ..+.+||+
T Consensus 18 ~~iL~~Vy~AL~EKGYnPinQivGYllSGDP 48 (79)
T PF06135_consen 18 REILKQVYAALEEKGYNPINQIVGYLLSGDP 48 (79)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHhheecCCC
Confidence 356778889999999875322 11455554
No 288
>PRK13936 phosphoheptose isomerase; Provisional
Probab=24.27 E-value=1e+02 Score=20.15 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=20.6
Q ss_pred cccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 10 KYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 10 ~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
+-|| +|||++.. ..+-.+.+.++++|.++..
T Consensus 111 ~~Dv~i~iS~sG~t---~~~~~~~~~ak~~g~~iI~ 143 (197)
T PRK13936 111 PGDVLLAISTSGNS---ANVIQAIQAAHEREMHVVA 143 (197)
T ss_pred CCCEEEEEeCCCCc---HHHHHHHHHHHHCCCeEEE
Confidence 4465 56676664 3466777888888877554
No 289
>PRK14150 heat shock protein GrpE; Provisional
Probab=24.26 E-value=1.3e+02 Score=19.99 Aligned_cols=46 Identities=17% Similarity=0.374 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|.++|+... + ..|+.|.+++-+||.. ...++-|+.+.|.
T Consensus 126 ~~~l~~~L~~~Gv~~i-~---~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~ 178 (193)
T PRK14150 126 LKSLLDTVAKFGVEVV-G---PVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYT 178 (193)
T ss_pred HHHHHHHHHHCCCeee-C---CCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeE
Confidence 3577788899999753 3 3699999999999843 2467777777774
No 290
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=24.23 E-value=1.6e+02 Score=24.47 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=40.5
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecC--------C-CC------CCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD--------Q-LN------RGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~--------~-~~------~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
-.||||.+..|+ .-+..+...|.+.|++++--+ . +. +.+. .++|.+.|++-++-++|-+|+
T Consensus 938 ~~~lisv~~~dK--~~l~~~a~~l~~~G~~i~aT~gT~~~l~~~gi~~~~v~~~~~~-~~~i~~~i~~~~idlvIn~~~ 1013 (1066)
T PRK05294 938 GTVFLSVRDRDK--EEVVELAKRLLELGFKILATSGTAKFLREAGIPVELVNKVHEG-RPHIVDLIKNGEIDLVINTPT 1013 (1066)
T ss_pred CeEEEEeccccH--HHHHHHHHHHHHcCCEEEEccHHHHHHHHCCCeeEEEeeccCc-CccHHHHHHcCCeEEEEECCC
Confidence 359999987774 345577777777777764321 1 11 1111 357889999999999988875
No 291
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.20 E-value=1.9e+02 Score=18.66 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=26.2
Q ss_pred HHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 30 LYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 30 L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
+...|.++|.++++-.+ -.+++.+.+.+++++|.-.+.
T Consensus 60 ~a~~L~~~g~~V~v~~r------~~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 60 LAALLLNRNATVTVCHS------KTKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHhhCCCEEEEEEC------CchhHHHHHhhCCEEEEcCCC
Confidence 67778888877666432 125777889999988765543
No 292
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=24.09 E-value=1.8e+02 Score=19.96 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=29.4
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHH
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLN 59 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~ 59 (81)
.|.++|-++......+.+..+.|.+.|+.+..-.--..|+++.+-+.+
T Consensus 156 ~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~lP~~~KDwNEllk~ 203 (218)
T TIGR00646 156 KIFICFDNDFAGKNAAANLEEILKKAGFITKVIEIKAAAKDWNDLFLL 203 (218)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeCCCcCCChhHHHHH
Confidence 678888665555667777778888888775443211234556555443
No 293
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.97 E-value=1e+02 Score=19.51 Aligned_cols=28 Identities=11% Similarity=0.105 Sum_probs=17.9
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++||+++.. .-+-.+.+.++++|.++..
T Consensus 80 I~iS~sG~t---~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 80 IAISGSGET---SSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred EEEcCCCCc---HHHHHHHHHHHHCCCeEEE
Confidence 467777765 2344666777888877543
No 294
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=23.94 E-value=1.9e+02 Score=17.95 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHhcCCceEEecC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
..++..|...|+++|++|.+..
T Consensus 28 ~~ia~~l~~~L~~~G~~v~~~r 49 (172)
T cd02696 28 LAIALKLAKLLEAAGAKVVLTR 49 (172)
T ss_pred HHHHHHHHHHHHHCCCEEEEEe
Confidence 4677888889999999987764
No 295
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=23.94 E-value=1e+02 Score=20.45 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=23.6
Q ss_pred EEEeceeccCc-ccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTR-DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~-~~~~~~L~~~L~~~g~~v~~ 43 (81)
+-|-|+..|.. ...++.|...|++.|+.|=+
T Consensus 3 ~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi 34 (175)
T COG4635 3 TLILYSTRDGQTRKIAEYIASHLRESGIQVDI 34 (175)
T ss_pred eEEEEecCCCcHHHHHHHHHHHhhhcCCeeee
Confidence 45778888754 46888999999999987644
No 296
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=23.81 E-value=79 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHhcCCceE
Q 044867 24 DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v 41 (81)
++|+++|...|.++|+++
T Consensus 20 ET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 20 ETFVEELAPRLVSKGIDV 37 (185)
T ss_pred HHHHHHHHHHHhcCCceE
Confidence 589999999998888764
No 297
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=23.80 E-value=2.8e+02 Score=19.94 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=36.0
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
..||.|-.-..+. ...+.++...|++.|+++-+|. .+.++...+..+-+ .+...|+|
T Consensus 318 ~~~vlI~~~~~~~-~~~a~~i~~~Lr~~Gi~v~i~~---~~~~~~~~~~~a~~~gi~~~vii 375 (412)
T PRK00037 318 PVDVYVVPLGEDA-ELAALKLAEKLRAAGIRVELDY---GGRKLKKQFKYADKSGARFVLIL 375 (412)
T ss_pred CCCEEEEEeChHH-HHHHHHHHHHHHHCCCeEEEeC---CCCCHHHHHHHHHHcCCCEEEEE
Confidence 4688887744332 2457788999999999988864 23445556555554 35555554
No 298
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=23.73 E-value=1.7e+02 Score=17.30 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=25.1
Q ss_pred HHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 32 STLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 32 ~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..++..|+.+-. .+..|.+..+.|.+..++-+.-++|+..+
T Consensus 72 ~~~~~~~~~~~~--~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~ 112 (146)
T cd01989 72 CFCSRKGVQCED--VVLEDDDVAKAIVEYVADHGITKLVMGAS 112 (146)
T ss_pred HHHhhcCCeEEE--EEEeCCcHHHHHHHHHHHcCCCEEEEecc
Confidence 344456664321 14456566788888888887777776543
No 299
>PRK14146 heat shock protein GrpE; Provisional
Probab=23.65 E-value=1.3e+02 Score=20.40 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|+..|+... + ..|+.|.+.+-+||.. ...+|-|+-+.|.
T Consensus 141 ~k~l~~~L~k~Gv~~i-~---~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~ 193 (215)
T PRK14146 141 LKEFYSVLEKSNVIRF-D---PKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYY 193 (215)
T ss_pred HHHHHHHHHHCcCeee-C---CCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeE
Confidence 3567788899999753 3 3699999999999863 3557777777774
No 300
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.64 E-value=1.2e+02 Score=18.15 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=17.2
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEE
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~ 42 (81)
++||+++.. ..-+..+.+.++++|.++.
T Consensus 66 i~is~~g~t--~~~~~~~~~~~~~~~~~vi 93 (153)
T cd05009 66 IFLAPEDRL--EEKLESLIKEVKARGAKVI 93 (153)
T ss_pred EEEecCChh--HHHHHHHHHHHHHcCCEEE
Confidence 567766643 2345667777777776544
No 301
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.63 E-value=1.3e+02 Score=16.53 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHhcCCceEEe
Q 044867 24 DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~ 43 (81)
..++.++...|.++|+++-+
T Consensus 15 ~g~~~~IF~~La~~~I~VDm 34 (75)
T cd04932 15 QGFLAKVFGILAKHNISVDL 34 (75)
T ss_pred cCHHHHHHHHHHHcCCcEEE
Confidence 47899999999999987543
No 302
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=23.61 E-value=2e+02 Score=18.07 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=36.7
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcC--CceEEecCC---------------C----CCCCcchHHHHHHHHhcCeEE
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ---------------L----NRGDEISESLLNAIQASAISV 68 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~---------------~----~~G~~~~~~i~~aI~~S~~~I 68 (81)
...||||-+..|+. -+-.+...|.+. |+.++--+. + ..|+ ++|.+.|.+-.+.+
T Consensus 4 ~~~v~lsv~d~dK~--~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~~~Gi~v~~vi~~~~gg~---~~i~~~I~~g~i~l 78 (142)
T PRK05234 4 RKRIALIAHDHKKD--DLVAWVKAHKDLLEQHELYATGTTGGLIQEATGLDVTRLLSGPLGGD---QQIGALIAEGKIDM 78 (142)
T ss_pred CcEEEEEEeccchH--HHHHHHHHHHHHhcCCEEEEeChHHHHHHhccCCeeEEEEcCCCCCc---hhHHHHHHcCceeE
Confidence 34689998888743 233444554444 444422210 0 1132 67999999999999
Q ss_pred EEecCC
Q 044867 69 IVFSEG 74 (81)
Q Consensus 69 ~v~S~~ 74 (81)
||..|+
T Consensus 79 VInt~d 84 (142)
T PRK05234 79 LIFFRD 84 (142)
T ss_pred EEEecC
Confidence 999883
No 303
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=23.43 E-value=66 Score=22.58 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHhcCCceEE
Q 044867 24 DNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~ 42 (81)
-.|+.+|+.+|+.+||++-
T Consensus 231 l~~~~riR~~l~~~gi~v~ 249 (252)
T COG1540 231 LAFARRIRAALEAEGIKVA 249 (252)
T ss_pred HHHHHHHHHHHHHcCCeee
Confidence 4799999999999999763
No 304
>PRK01215 competence damage-inducible protein A; Provisional
Probab=23.42 E-value=1.2e+02 Score=21.15 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=24.6
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCc---chHHHHHHHHhcCeEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDE---ISESLLNAIQASAISV 68 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~---~~~~i~~aI~~S~~~I 68 (81)
.-...|...|++.|+.+-.-. ..+|+ |.+.+.+++++++++|
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~--~v~Dd~~~I~~~l~~a~~~~DlVI 67 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRIT--VVMDDIEEIVSAFREAIDRADVVV 67 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEE--EeCCCHHHHHHHHHHHhcCCCEEE
Confidence 345578888999998864432 22333 4455656665565433
No 305
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=23.33 E-value=3.3e+02 Score=20.48 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=39.6
Q ss_pred CCcccEEEeceecc-CcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 8 NKKYDVFVSFRGED-TRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 8 ~~~~dVFISy~~~D-~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
-.+++|+|-.-.++ .....+.+|...|++. +++.+|. . ..+...+..|-..---.++|+.++
T Consensus 361 lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~---~-~slgkkir~A~~~Gip~~IIIG~~ 423 (456)
T PRK04173 361 LAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDD---S-GSIGKRYRRQDEIGTPFCITVDFD 423 (456)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeC---C-CCHHHHHHHHHHcCCCEEEEECCc
Confidence 35678877664442 1236788999999999 9999983 2 356667776654433344444443
No 306
>PRK14143 heat shock protein GrpE; Provisional
Probab=23.26 E-value=1.9e+02 Score=20.05 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
..+.|...|++.|+...- ..|+.|.+++-+||.. -..++-++-+.|.
T Consensus 154 i~k~l~~~L~k~GV~~i~----~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~ 207 (238)
T PRK14143 154 LYKQLVDVLKRLGVSPMR----VVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYH 207 (238)
T ss_pred HHHHHHHHHHHCCCeeeC----CCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCce
Confidence 466788889999997533 2599999999999853 3556667766664
No 307
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=23.24 E-value=1.9e+02 Score=17.84 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=5.1
Q ss_pred HHHHHHhcCCce
Q 044867 29 HLYSTLCRQNIQ 40 (81)
Q Consensus 29 ~L~~~L~~~g~~ 40 (81)
+|...|+++|..
T Consensus 93 ~l~~~L~~~G~~ 104 (130)
T PF12965_consen 93 RLGKLLKEAGCK 104 (130)
T ss_pred HHHHHHHHCCCE
Confidence 333444444443
No 308
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=23.16 E-value=67 Score=25.02 Aligned_cols=29 Identities=14% Similarity=0.407 Sum_probs=22.4
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
|+.|+...+ -+++.+|...|.++|++|-.
T Consensus 15 ivG~s~sGK-TTlie~li~~L~~~G~rVav 43 (597)
T PRK14491 15 FCAYSGTGK-TTLLEQLIPELNQRGLRLAV 43 (597)
T ss_pred EEcCCCCCH-HHHHHHHHHHHHhCCceEEE
Confidence 666655543 48999999999999987644
No 309
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=23.01 E-value=1.6e+02 Score=18.87 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=24.4
Q ss_pred CCCcccEEEeceeccCcccHHHHHHHHHhcCCc
Q 044867 7 NNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNI 39 (81)
Q Consensus 7 ~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~ 39 (81)
.....+||++|...|..+-+--+|...|+..+-
T Consensus 81 ~~d~~~vlVCFt~~~vPKILPiRlLSeLK~~~~ 113 (141)
T PF09426_consen 81 DNDDNKVLVCFTRVDVPKILPIRLLSELKGLEN 113 (141)
T ss_dssp SS-TTEEEEEEEETTS-SSHHHHHHHHHTTSS-
T ss_pred cCCCCeEEEEEEecCCcceecHHHHHhhccccC
Confidence 366789999999999887777788888876544
No 310
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=22.98 E-value=59 Score=17.05 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=10.4
Q ss_pred HHhcCeEEEEecCC
Q 044867 61 IQASAISVIVFSEG 74 (81)
Q Consensus 61 I~~S~~~I~v~S~~ 74 (81)
+=+.++.++|++|+
T Consensus 30 LC~~~v~~iv~~~~ 43 (51)
T PF00319_consen 30 LCGVDVALIVFSPD 43 (51)
T ss_dssp HHT-EEEEEEEETT
T ss_pred ecCCeEEEEEECCC
Confidence 34688899999986
No 311
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=22.93 E-value=1.8e+02 Score=19.54 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=22.4
Q ss_pred cccEEEece-eccCcccHHHHHHHHHhcCCce-EEecC
Q 044867 10 KYDVFVSFR-GEDTRDNFTSHLYSTLCRQNIQ-TFIDD 45 (81)
Q Consensus 10 ~~dVFISy~-~~D~~~~~~~~L~~~L~~~g~~-v~~d~ 45 (81)
.-++.+|+| ++| ...+-+|...+....++ +|+|.
T Consensus 25 ~~~~~~s~S~Gkd--s~VlL~l~~~~~~~~i~vv~vDT 60 (226)
T TIGR02057 25 PHGLVQTSAFGIQ--ALVTLHLLSSISEPMIPVIFIDT 60 (226)
T ss_pred CCCEEEEecCCHH--HHHHHHHHHHhhCCCCCEEEEeC
Confidence 346889998 777 35667777776634565 56664
No 312
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=22.87 E-value=64 Score=18.99 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCceEEecC
Q 044867 28 SHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 28 ~~L~~~L~~~g~~v~~d~ 45 (81)
..|...|+++|.+|-+++
T Consensus 42 ~~L~~~L~kRgv~v~L~~ 59 (86)
T PF09153_consen 42 SRLIEFLKKRGVSVSLDE 59 (86)
T ss_dssp HHHHHHHHHTT------B
T ss_pred HHHHHHHHhcCceeEEee
Confidence 467788999999998886
No 313
>PRK14147 heat shock protein GrpE; Provisional
Probab=22.85 E-value=1.7e+02 Score=19.18 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
...|...|++.|+... + ..|+.|.+++-+||.. ...+|-++.+.|.
T Consensus 103 ~k~l~~~L~~~Gv~~i-~---~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~ 155 (172)
T PRK14147 103 YKQLLKVAADNGLTLL-D---PVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYL 155 (172)
T ss_pred HHHHHHHHHHCCCEEe-C---CCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcE
Confidence 3567778889999753 3 2599999999999853 3456777777764
No 314
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=22.81 E-value=76 Score=19.02 Aligned_cols=39 Identities=8% Similarity=0.267 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCce-EEecCCCCCCCcchHHHHHHHHhcCe
Q 044867 26 FTSHLYSTLCRQNIQ-TFIDDQLNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~-v~~d~~~~~G~~~~~~i~~aI~~S~~ 66 (81)
.+.++.+.|.+.++- +++-+++ .+.+.+++.+.++++..
T Consensus 33 ~~~~~~~~l~~~~~gII~iTE~~--a~~i~~~~i~~~~~~~~ 72 (104)
T PRK01189 33 LVKKFLEIFNNPKCKYIFVSEST--KNMFDKNTLRSLESSSK 72 (104)
T ss_pred HHHHHHHHHhcCCeEEEEEEHHH--HhhCCHHHHHHHhccCC
Confidence 457777777777654 3444332 13333334444554433
No 315
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=22.61 E-value=2.4e+02 Score=18.88 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCceEEecC--CCCCCCcchHHHHHHHHhcCeEEEEe
Q 044867 28 SHLYSTLCRQNIQTFIDD--QLNRGDEISESLLNAIQASAISVIVF 71 (81)
Q Consensus 28 ~~L~~~L~~~g~~v~~d~--~~~~G~~~~~~i~~aI~~S~~~I~v~ 71 (81)
..|.+.|+++|++|-.-. +..+.......+.+.+..-++-+++|
T Consensus 143 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~f 188 (255)
T PRK05752 143 ELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVV 188 (255)
T ss_pred HHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEE
Confidence 357788888887643221 11222223445556666544443333
No 316
>PRK14155 heat shock protein GrpE; Provisional
Probab=22.54 E-value=1.6e+02 Score=19.90 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
.+.|...|++.|+... + -..|+.|.+++-+||.. ...+|-|+.+.|.
T Consensus 103 ~k~~~~~L~k~GV~~I-~--~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~ 156 (208)
T PRK14155 103 EKELLGAFERNGLKKI-D--PAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYE 156 (208)
T ss_pred HHHHHHHHHHCCCcee-c--CCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeE
Confidence 4567778889998642 2 12599999999998864 3557777777664
No 317
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=22.41 E-value=1.5e+02 Score=21.73 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=35.3
Q ss_pred ecee--ccCcccHHHHHHHHHhcCC-ceEEe-cCCCCC------CCcchHHHHHHHHhcCeEEEEecC
Q 044867 16 SFRG--EDTRDNFTSHLYSTLCRQN-IQTFI-DDQLNR------GDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 16 Sy~~--~D~~~~~~~~L~~~L~~~g-~~v~~-d~~~~~------G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
+|.. .|.++.=+-.|.+.|.++| ..|-. |..+.. +.....++.++++.++.+|+....
T Consensus 329 afK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~ 396 (415)
T PRK11064 329 AFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVDH 396 (415)
T ss_pred EECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCCC
Confidence 5643 3455566778999999986 76654 432211 111224567888999887766544
No 318
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=22.39 E-value=91 Score=19.71 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=17.7
Q ss_pred cHHHHHHHHHhcCCceEEec
Q 044867 25 NFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d 44 (81)
.-+.+|..+|+++|+.|+..
T Consensus 23 E~i~~l~~~lk~~G~~V~~~ 42 (137)
T COG3439 23 ETIERLEEKLKKNGFKVFTE 42 (137)
T ss_pred HHHHHHHHHHHhCCCeEEEE
Confidence 45789999999999999887
No 319
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=22.34 E-value=96 Score=21.40 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=19.6
Q ss_pred EEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 41 TFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 41 v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
||++|.+... ..+...+.+++++++|+|=|
T Consensus 184 V~FGE~lp~~--~~~~a~~~~~~aDlllviGT 213 (260)
T cd01409 184 VFFGENVPRD--RVVTAAARLAEADALLVLGS 213 (260)
T ss_pred EECCCCCCHH--HHHHHHHHHhcCCEEEEeCc
Confidence 6666643322 23466778888999998754
No 320
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=22.29 E-value=60 Score=19.45 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=13.9
Q ss_pred cHHHHHHHHHhcCCceEEec
Q 044867 25 NFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d 44 (81)
.++.=|.+.|+++||++|--
T Consensus 73 pL~~Gl~D~l~~~gi~vfGP 92 (100)
T PF02844_consen 73 PLVAGLADALRAAGIPVFGP 92 (100)
T ss_dssp HHHTTHHHHHHHTT-CEES-
T ss_pred HHHHHHHHHHHHCCCcEECc
Confidence 45666778889999988853
No 321
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=22.16 E-value=68 Score=21.25 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=22.4
Q ss_pred eeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 18 RGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 18 ~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
..+|+ ..+-.++++.|+++|.+++-...
T Consensus 64 ~e~g~-~e~~~E~~~~L~erGa~v~~~sH 91 (186)
T COG1751 64 EEKGT-QEMDEEVRKELKERGAKVLTQSH 91 (186)
T ss_pred ccCCc-eecCHHHHHHHHHcCceeeeehh
Confidence 44554 47888999999999999988776
No 322
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=22.03 E-value=47 Score=20.06 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=15.0
Q ss_pred CCCCCcchHHHHHHHHhcCe
Q 044867 47 LNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 47 ~~~G~~~~~~i~~aI~~S~~ 66 (81)
+.+|+++.+.|.+..++-.+
T Consensus 8 l~~Gedl~~~l~~~~~~~~i 27 (120)
T PF03479_consen 8 LDPGEDLLESLEAFAREHGI 27 (120)
T ss_dssp EETTSBHHHHHHHHHHHHT-
T ss_pred ECCCCHHHHHHHHHHHHCCC
Confidence 56888888888887776555
No 323
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.93 E-value=56 Score=15.68 Aligned_cols=14 Identities=36% Similarity=0.230 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCce
Q 044867 27 TSHLYSTLCRQNIQ 40 (81)
Q Consensus 27 ~~~L~~~L~~~g~~ 40 (81)
.+.|..-|..+||.
T Consensus 6 ~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 6 DSDLKSWLKSHGIP 19 (38)
T ss_pred HHHHHHHHHHcCCC
Confidence 36788889999985
No 324
>PRK14157 heat shock protein GrpE; Provisional
Probab=21.87 E-value=1.6e+02 Score=20.34 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
.....|...|+++|+..+ + ..|+.|.+++-++|.. ...++-|+-+.|.
T Consensus 155 ~i~k~l~~vL~k~GVe~I-~---~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~ 209 (227)
T PRK14157 155 AVAAKIDKAFEKFGVEKF-G---EKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYR 209 (227)
T ss_pred HHHHHHHHHHHHCCCEEe-C---CCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCce
Confidence 345678888999999764 3 2599999999998854 4567777777764
No 325
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=21.80 E-value=2.1e+02 Score=17.66 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCce-EEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 27 TSHLYSTLCRQNIQ-TFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 27 ~~~L~~~L~~~g~~-v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
...+...|.+..+. +.+|. .+| +......++..++..|+++.++
T Consensus 83 l~~~l~~l~~~~yD~iiiD~--~~~--~~~~~~~~l~~ad~viv~~~~~ 127 (195)
T PF01656_consen 83 LREILESLIKSDYDYIIIDT--PPG--LSDPVRNALAAADYVIVPIEPD 127 (195)
T ss_dssp HHHHHHHHHHTTSSEEEEEE--CSS--SSHHHHHHHHTSSEEEEEEESS
T ss_pred HHHHHHHhhhccccceeecc--ccc--ccHHHHHHHHhCceeeeecCCc
Confidence 34444444444454 56663 333 3455788899999999999875
No 326
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=21.65 E-value=1.1e+02 Score=22.84 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCc---chHHHHHHHHhcCeEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDE---ISESLLNAIQASAISV 68 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~---~~~~i~~aI~~S~~~I 68 (81)
-...|...|++.|+.+..-. ..+|+ +.+.+.+++++++++|
T Consensus 21 N~~~l~~~L~~~G~~v~~~~--~v~Dd~~~i~~~l~~a~~~~DlVI 64 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRT--TVGDNPERLKTIIRIASERADVLI 64 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEE--EeCCCHHHHHHHHHHHhcCCCEEE
Confidence 35578888999998865432 22343 3344444444455444
No 327
>PRK10646 ADP-binding protein; Provisional
Probab=21.58 E-value=90 Score=20.05 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=35.5
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCc-chHHHHHHHHhcCeEEEEecCCCC
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDE-ISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~-~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
|++.+.+++. .+...|...|+. |--+.+.-++-.|+. +.+.|.+++... -.|-||.|.
T Consensus 6 ~~~~s~~~t~-~l~~~la~~l~~-g~vi~L~GdLGaGKTtf~rgl~~~Lg~~---~~V~SPTFt 64 (153)
T PRK10646 6 IPLPDEQATL-DLGARVAKACDG-ATVIYLYGDLGAGKTTFSRGFLQALGHQ---GNVKSPTYT 64 (153)
T ss_pred EECCCHHHHH-HHHHHHHHhCCC-CcEEEEECCCCCCHHHHHHHHHHHcCCC---CCCCCCCEe
Confidence 5555555553 677777666644 545788887888865 556666666422 235677664
No 328
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=21.58 E-value=2.3e+02 Score=21.33 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHhc-CCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 24 DNFTSHLYSTLCR-QNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 24 ~~~~~~L~~~L~~-~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
+.|-.+|.+++++ .|.++.+-....+|..+..++-+...+....|+.-|.+-
T Consensus 109 ~~fp~el~~~i~~~~g~~~i~gN~~asGT~ii~~lGe~h~~Tg~~IvYTSaDs 161 (397)
T COG1015 109 NGFPEELLDEIERRTGRKGILGNKHASGTEIIKDLGEEHMKTGKPIVYTSADS 161 (397)
T ss_pred ccChHHHHHHHHhhcCCceEeccCccchhHHHHHhhHHHHhcCCeEEEecCCc
Confidence 5688888888865 467777555588999999999998889999999888763
No 329
>PRK05473 hypothetical protein; Provisional
Probab=21.57 E-value=61 Score=19.11 Aligned_cols=18 Identities=11% Similarity=0.290 Sum_probs=14.5
Q ss_pred ccHHHHHHHHHhcCCceE
Q 044867 24 DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v 41 (81)
...+...+.+|+++|+++
T Consensus 21 ~eiL~~Vy~AL~EKGYNP 38 (86)
T PRK05473 21 REILTTVYDALEEKGYNP 38 (86)
T ss_pred HHHHHHHHHHHHHcCCCh
Confidence 356778889999999875
No 330
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.37 E-value=1.1e+02 Score=15.57 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHhcCCceEEe
Q 044867 24 DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~ 43 (81)
..+..++.+.|.+.|+++.+
T Consensus 15 ~~~~~~if~~L~~~~I~v~~ 34 (66)
T cd04919 15 IGIAGRMFTTLADHRINIEM 34 (66)
T ss_pred cCHHHHHHHHHHHCCCCEEE
Confidence 36788999999999998754
No 331
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=21.31 E-value=1e+02 Score=19.00 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=24.1
Q ss_pred cHHHHHHHHHhcCCceEEecCC-CCC-----CCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQ-LNR-----GDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~-~~~-----G~~~~~~i~~aI~~ 63 (81)
.+...+.+.+.+..-.+++-.- +.+ +..+.+.|.++.++
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~~~~~~~l~~~L~~a~~r 65 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLITEYGPVILDALLAAARR 65 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccccccchHHHHHHHHHHHC
Confidence 4566677777655555565554 554 55666777776663
No 332
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=21.30 E-value=68 Score=16.67 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHhcCCce
Q 044867 24 DNFTSHLYSTLCRQNIQ 40 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~ 40 (81)
..|+.-|.+.+++||++
T Consensus 23 ~dFI~Ll~~Ei~rR~L~ 39 (46)
T PF08970_consen 23 PDFIRLLEEEIQRRSLK 39 (46)
T ss_dssp HHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 47999999999999874
No 333
>PRK14153 heat shock protein GrpE; Provisional
Probab=21.28 E-value=1.8e+02 Score=19.53 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
....|...|++.|+...- ..|+.|.+++-+||.. ...++-|+.+.|.
T Consensus 119 i~k~~~~vL~k~Gv~~I~----~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~ 172 (194)
T PRK14153 119 VSKQFFSILEKYGLERIE----CEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYA 172 (194)
T ss_pred HHHHHHHHHHHCCCeeeC----CCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcE
Confidence 445677788899997533 2499999999998854 2456777777664
No 334
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=21.25 E-value=1.4e+02 Score=16.34 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=21.7
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceE
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v 41 (81)
=|+..+.|. ...+..+-..|.++|.++
T Consensus 3 iltv~g~Dr-~GiVa~vs~~la~~g~nI 29 (77)
T cd04893 3 VISALGTDR-PGILNELTRAVSESGCNI 29 (77)
T ss_pred EEEEEeCCC-ChHHHHHHHHHHHcCCCE
Confidence 466778885 489999999999998763
No 335
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.14 E-value=59 Score=14.09 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=12.0
Q ss_pred cHHHHHHHHHhcCCceE
Q 044867 25 NFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v 41 (81)
.-+..+.+.+++.|+++
T Consensus 18 ~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 18 DAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34667888888888753
No 336
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.07 E-value=1.1e+02 Score=20.39 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=13.9
Q ss_pred hHHHHHHHHhcCeEEEEec
Q 044867 54 SESLLNAIQASAISVIVFS 72 (81)
Q Consensus 54 ~~~i~~aI~~S~~~I~v~S 72 (81)
.+...+.+++++++|+|=|
T Consensus 146 ~~~a~~~~~~aDlllviGT 164 (206)
T cd01410 146 WMGAAAAACRADLFLCLGT 164 (206)
T ss_pred HHHHHHHHhcCCEEEEECc
Confidence 3456677788999988754
No 337
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=21.05 E-value=1.9e+02 Score=19.16 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=21.3
Q ss_pred HHHHHHhcCCceEEec--CCCCCCCcchHHHHHHHHhcCe-EEEEecC
Q 044867 29 HLYSTLCRQNIQTFID--DQLNRGDEISESLLNAIQASAI-SVIVFSE 73 (81)
Q Consensus 29 ~L~~~L~~~g~~v~~d--~~~~~G~~~~~~i~~aI~~S~~-~I~v~S~ 73 (81)
.|.+.|+++|+.+-.- -+..+-......+.+.+++.++ .|++.|+
T Consensus 132 ~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~ 179 (240)
T PRK09189 132 VFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYSR 179 (240)
T ss_pred hhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeCH
Confidence 5666777777653211 1111222223455566665544 4455554
No 338
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.03 E-value=58 Score=18.22 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCceE
Q 044867 28 SHLYSTLCRQNIQT 41 (81)
Q Consensus 28 ~~L~~~L~~~g~~v 41 (81)
..|...|+++||.+
T Consensus 23 ~eL~~~L~~~Gi~v 36 (70)
T PF01316_consen 23 EELVELLEEEGIEV 36 (70)
T ss_dssp HHHHHHHHHTT-T-
T ss_pred HHHHHHHHHcCCCc
Confidence 46778888889864
No 339
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=21.02 E-value=2.9e+02 Score=18.99 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=34.9
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHh--cCeEEE
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQA--SAISVI 69 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~--S~~~I~ 69 (81)
..|.|-+...+-.......+...|++.|+++-......+| .++...+. .|+. .+.+++
T Consensus 133 ~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~-~l~~~~pd~v~~ 193 (334)
T cd06356 133 KKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLDVSDFGSTIQ-KIQAAKPDFVMS 193 (334)
T ss_pred CeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCCchhHHHHHH-HHHhcCCCEEEE
Confidence 3477766433333456677778889999887665555666 45665554 4544 444443
No 340
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=20.86 E-value=88 Score=22.77 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=25.8
Q ss_pred HHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcC-eEEEEecCCCCc
Q 044867 31 YSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASA-ISVIVFSEGYAS 77 (81)
Q Consensus 31 ~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~-~~I~v~S~~y~~ 77 (81)
...|.+.|++|++|.+ + .....++..+.+...+ ..|..++|+|++
T Consensus 262 wqdl~e~gv~Vlf~~d~L--~~~~v~e~~rql~~~dk~~I~Ff~pn~~~ 308 (322)
T PRK02797 262 WQDLTEQGLPVLFTGDDL--DEDIVREAQRQLASVDKNIIAFFSPNYLQ 308 (322)
T ss_pred HHHHHhCCCeEEecCCcc--cHHHHHHHHHHHHhhCcceeeecCHhHHH
Confidence 3567889999988765 5 2222233333355444 455566667653
No 341
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=20.81 E-value=2.7e+02 Score=18.50 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=32.0
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceE-EecCCCCCCCcc--hHHHHHHHHhcCeEE
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQT-FIDDQLNRGDEI--SESLLNAIQASAISV 68 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v-~~d~~~~~G~~~--~~~i~~aI~~S~~~I 68 (81)
+--|+|+|-.--. .....+|.+.|+++|++. |+ ..|..+ .+++.++|.+....|
T Consensus 36 ~k~VaLTFDDGp~-~~~t~~lL~~L~~~~vkATFF----v~G~~~~~~p~~ir~i~~~GheI 92 (224)
T TIGR02884 36 KKVIYLTFDNGYE-NGYTPKILDVLKEKKVPAAFF----VTGHYIKTQPDLIKRMVDEGHIV 92 (224)
T ss_pred CCEEEEEEECCCC-ccchHHHHHHHHHcCCCeEEE----eechhhHHCHHHHHHHHHcCCEe
Confidence 4458898843321 246778999999999862 22 223322 245556666665543
No 342
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=20.69 E-value=1.7e+02 Score=17.97 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCceEEecCC--C-----------CCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQ--L-----------NRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~--~-----------~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.+..+.+.|.+.|+.+---+. + ..|+.+.+++.+-+..-.+.++++...
T Consensus 17 ~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~ 78 (134)
T PRK00668 17 LIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGE 78 (134)
T ss_pred cHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCc
Confidence 456788888899987544332 2 146677778888887767777777653
No 343
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=20.67 E-value=1.9e+02 Score=16.99 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHhcCCceEEecCC---CCCCCcchHHHHHHHHhc
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQ---LNRGDEISESLLNAIQAS 64 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~---~~~G~~~~~~i~~aI~~S 64 (81)
..++....+.|++.|++..+..- ++ |+ .+++.++|+++
T Consensus 18 s~yVa~~i~~l~~sGl~y~~~pm~T~IE-Ge--~dev~~~i~~~ 58 (97)
T TIGR00106 18 SSYVAAAIEVLKESGLKYELHPMGTLIE-GD--LDELFEAIKAI 58 (97)
T ss_pred HHHHHHHHHHHHHcCCCeEecCCccEEe-cC--HHHHHHHHHHH
Confidence 45788888889999998877753 44 64 45666666553
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=20.63 E-value=2e+02 Score=17.25 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=21.3
Q ss_pred HHHHHHhcCCce-EEecCCCCCCCcchHHHHHHHHhc---CeEEEEecC
Q 044867 29 HLYSTLCRQNIQ-TFIDDQLNRGDEISESLLNAIQAS---AISVIVFSE 73 (81)
Q Consensus 29 ~L~~~L~~~g~~-v~~d~~~~~G~~~~~~i~~aI~~S---~~~I~v~S~ 73 (81)
.+..++++..+- .-+|-+-.. ......+.+.+.+. .-.|+|+++
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~-~~~~~~l~~~l~~~~~~k~~iivlNK 51 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPL-LFRPPDLERYVKEVDPRKKNILLLNK 51 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCc-ccCCHHHHHHHHhccCCCcEEEEEec
Confidence 445556555533 333432212 22345666666543 446666665
No 345
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=20.63 E-value=2.2e+02 Score=17.45 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=32.9
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
.+.+.|.+.|++.|+...-. .|+.+.+.+-+|+.. ....+=|+.+.|.
T Consensus 70 ~i~~~l~~~L~~~Gv~~i~~----~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~ 124 (137)
T cd00446 70 MTLKQLLDVLEKHGVEKIEP----EGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYK 124 (137)
T ss_pred HHHHHHHHHHHHCCCEEECC----CCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeE
Confidence 45667778889999986543 477888888887642 3445666666654
No 346
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=20.59 E-value=1.6e+02 Score=20.02 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=29.6
Q ss_pred cHHHHHHHHHhcCCceE-EecCC---CCCCC----cchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQNIQT-FIDDQ---LNRGD----EISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v-~~d~~---~~~G~----~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
..+..+.+.|.+.|..+ .+|=. +...+ .-...+.+.|+.++ .|++.||.|..|
T Consensus 44 ~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~AD-gvii~TPEYn~s 104 (219)
T TIGR02690 44 LLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSE-GQVWCSPERHGA 104 (219)
T ss_pred HHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCC-EEEEeCCccccC
Confidence 45555666666566554 23211 11111 11245667777776 667789999876
No 347
>PRK11460 putative hydrolase; Provisional
Probab=20.58 E-value=2.7e+02 Score=18.40 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=25.3
Q ss_pred CcccEEEeceeccCc--ccHHHHHHHHHhcCCceE
Q 044867 9 KKYDVFVSFRGEDTR--DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 9 ~~~dVFISy~~~D~~--~~~~~~L~~~L~~~g~~v 41 (81)
....||+.|...|.. .....++.+.|++.|.++
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~ 181 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDV 181 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCe
Confidence 466799999888864 346778889999888653
No 348
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=20.55 E-value=1.6e+02 Score=18.58 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=29.9
Q ss_pred cHHHHHHHHHhcCCceE-EecC-CCCC-----C---CcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQNIQT-FIDD-QLNR-----G---DEISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v-~~d~-~~~~-----G---~~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
..++.+.+.|+++|..+ .+|- ++.. + .+-.+.+.+.|.+++. |++.||.|..|
T Consensus 17 ~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~-iI~~sP~Y~~s 79 (171)
T TIGR03567 17 ALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADG-VVVATPVYKAS 79 (171)
T ss_pred HHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCE-EEEECCcccCC
Confidence 45666777777766532 2221 1211 1 1223567777788885 55678888765
No 349
>PRK00698 tmk thymidylate kinase; Validated
Probab=20.54 E-value=2.3e+02 Score=17.76 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=21.5
Q ss_pred EEEeceeccCc--ccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~ 43 (81)
.||...+.|.. .+++..|.+.|..+|..+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 46777776643 57888888888877755443
No 350
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=20.49 E-value=1.5e+02 Score=15.84 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.7
Q ss_pred eceeccCcccHHHHHHHHHhcCCceE
Q 044867 16 SFRGEDTRDNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 16 Sy~~~D~~~~~~~~L~~~L~~~g~~v 41 (81)
+..+.|. ...+.++-..|.++|+++
T Consensus 3 ~v~g~D~-~Giv~~it~~l~~~~~nI 27 (81)
T cd04869 3 EVVGNDR-PGIVHEVTQFLAQRNINI 27 (81)
T ss_pred EEEeCCC-CCHHHHHHHHHHHcCCCe
Confidence 4456664 478999999999988663
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=20.34 E-value=1.3e+02 Score=20.55 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
..+|.+.+++-.+-+++-+--.|.....+.+.+.+.+ +-.|+|+++.
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~-kp~IiVlNK~ 58 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGN-KPRLIVLNKA 58 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCC-CCEEEEEEcc
Confidence 3455566666666554433211212223455555543 4456666653
No 352
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=20.26 E-value=1.2e+02 Score=15.33 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHhcCCceEEec
Q 044867 24 DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d 44 (81)
..+..++.+.|.+.|+++.+-
T Consensus 15 ~~~~~~i~~~l~~~~I~v~~i 35 (66)
T cd04922 15 PGVAATFFSALAKANVNIRAI 35 (66)
T ss_pred ccHHHHHHHHHHHCCCCEEEE
Confidence 368889999999999987543
No 353
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.19 E-value=1.9e+02 Score=16.51 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEE
Q 044867 29 HLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIV 70 (81)
Q Consensus 29 ~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v 70 (81)
.+...+-++|+.++.++=+-..-.=.++|.+..++..+.+.|
T Consensus 77 ~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 77 EIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 444555568889999864322322245667777776666554
No 354
>PRK09108 type III secretion system protein HrcU; Validated
Probab=20.12 E-value=2.7e+02 Score=20.30 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=32.5
Q ss_pred cHHHHHHHHHhcCCceEEecC-------CCCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------QLNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~~~~G~~~~~~i~~aI~~ 63 (81)
..+.++++.-+++|+++.-|. ..+.|+.|++++.+++.+
T Consensus 291 ~~A~~Ir~~A~e~~VPvven~pLARaLy~~~vg~~IP~ely~aVA~ 336 (353)
T PRK09108 291 DGALALRRHAHALGIPIVGNPPVARALYRVELDEPIPEELFETVAA 336 (353)
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 688999999999999988874 156899999999888754
No 355
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.12 E-value=1.9e+02 Score=19.81 Aligned_cols=47 Identities=19% Similarity=0.438 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-------cCeEEEEecCCCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-------SAISVIVFSEGYA 76 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-------S~~~I~v~S~~y~ 76 (81)
..+.|...|++.|+... + ..|+.|.+++-+||.. ...+|-|+.+.|.
T Consensus 119 i~k~l~~~L~k~Gv~~I-~---~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~ 172 (214)
T PRK14163 119 VAESLETTVAKLGLQQF-G---KEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYR 172 (214)
T ss_pred HHHHHHHHHHHCCCEEe-C---CCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcC
Confidence 45677788899999753 3 2699999999998854 3567777777774
No 356
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=20.11 E-value=1.1e+02 Score=18.05 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=18.8
Q ss_pred cHHHHHHHHHhcCCce-EEecCCCCCCCcchHHHHHHHHhcCe
Q 044867 25 NFTSHLYSTLCRQNIQ-TFIDDQLNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~-v~~d~~~~~G~~~~~~i~~aI~~S~~ 66 (81)
...+.|.+.+.+.++- +++.+++. +.+.+.+.+.++++..
T Consensus 31 e~~~~l~~l~~~~d~gII~Ite~~~--~~i~e~i~~~~~~~~~ 71 (100)
T PRK02228 31 KLDEAVEEVLEDDDVGILVMHDDDL--EKLPRRLRRTLEESVE 71 (100)
T ss_pred HHHHHHHHHhhCCCEEEEEEehhHh--HhhHHHHHHHHhcCCC
Confidence 3455555555566554 44444321 3344555554544444
No 357
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=20.10 E-value=3.2e+02 Score=21.65 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=38.9
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCC---CCCCCcchHHHHHHHHhc-CeEEEEecCC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ---LNRGDEISESLLNAIQAS-AISVIVFSEG 74 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~---~~~G~~~~~~i~~aI~~S-~~~I~v~S~~ 74 (81)
-|||+ .+.+-..-=++.|.+..+..|+.+. |.. ..+|+ +.|.+.|.+- +++|.-.||.
T Consensus 4 gVyvC-cg~nI~~vDi~~l~~~ak~~gv~v~-d~~~~CSd~gq---e~i~~dikeldrvVvaACsPr 65 (622)
T COG1148 4 GVYVC-CGLNIAVVDIEALKEFAKLEGVVVA-DYPYMCSDPGQ---EMIKKDIKELDRVVVAACSPR 65 (622)
T ss_pred eEEEe-cCCccceeEHHHHHHHHhcCCeEEe-eeeeccCchhH---HHHHHHHHHhhheEEEecCCc
Confidence 47888 5665433346788888888999988 655 35665 4677777764 4555566664
Done!