Query 044867
Match_columns 81
No_of_seqs 100 out of 1039
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 9.5E-30 3.3E-34 166.0 1.5 78 4-81 2-80 (176)
2 3ozi_A L6TR; plant TIR domain, 99.9 3.4E-29 1.2E-33 166.4 3.5 76 6-81 31-107 (204)
3 3h16_A TIR protein; bacteria T 99.9 9.2E-26 3.1E-30 143.3 3.1 75 6-81 16-91 (154)
4 1fyx_A TOLL-like receptor 2; b 99.9 2.6E-24 8.9E-29 136.4 1.7 73 7-81 2-78 (149)
5 2j67_A TOLL like receptor 10; 99.9 1.2E-23 4.2E-28 136.9 2.7 75 5-81 30-108 (178)
6 3ub2_A TOLL/interleukin-1 rece 99.9 9.7E-25 3.3E-29 138.3 -3.7 75 5-81 5-82 (146)
7 1t3g_A X-linked interleukin-1 99.9 4.6E-23 1.6E-27 132.0 2.9 73 9-81 1-86 (159)
8 2js7_A Myeloid differentiation 99.9 1.5E-23 5.1E-28 134.4 -0.6 74 6-81 12-89 (160)
9 3j0a_A TOLL-like receptor 5; m 99.7 1.2E-18 4.2E-23 131.7 6.3 74 6-81 666-746 (844)
10 1eiw_A Hypothetical protein MT 98.0 1.1E-06 3.9E-11 53.1 0.2 55 8-81 2-56 (111)
11 3hyn_A Putative signal transdu 95.3 0.025 8.5E-07 36.9 4.4 69 10-80 5-96 (189)
12 2f62_A Nucleoside 2-deoxyribos 94.2 0.083 2.8E-06 33.3 4.7 49 25-73 27-77 (161)
13 2yvq_A Carbamoyl-phosphate syn 87.9 1.8 6.2E-05 26.3 5.8 61 13-75 27-106 (143)
14 2khz_A C-MYC-responsive protei 87.6 2 7E-05 26.6 6.0 70 1-72 3-86 (165)
15 1v95_A Nuclear receptor coacti 86.8 3.7 0.00013 25.0 7.3 63 5-70 3-67 (130)
16 4fyk_A Deoxyribonucleoside 5'- 83.0 4.2 0.00014 25.3 5.8 60 12-72 4-77 (152)
17 2jug_A TUBC protein; docking d 80.4 1.4 4.7E-05 24.1 2.6 37 27-63 7-47 (78)
18 1sc3_B Interleukin-1 beta conv 79.6 0.58 2E-05 26.5 0.9 26 14-39 21-46 (88)
19 1s2d_A Purine trans deoxyribos 79.5 4.1 0.00014 25.5 4.9 62 12-75 9-93 (167)
20 2ql9_B Caspase-7; cysteine pro 77.5 0.69 2.4E-05 26.5 0.7 25 15-39 24-48 (97)
21 1qtn_B Caspase-8; apoptosis, d 76.3 0.66 2.3E-05 26.5 0.4 31 9-39 11-50 (95)
22 2dko_B Caspase-3; low barrier 75.4 0.84 2.9E-05 26.5 0.7 30 9-38 15-53 (103)
23 1pyo_B Caspase-2; apoptosis, c 74.5 0.92 3.1E-05 26.4 0.7 24 15-38 28-51 (105)
24 3ehd_A Uncharacterized conserv 71.5 8.3 0.00028 24.1 4.7 50 24-73 19-79 (162)
25 1evl_A Threonyl-tRNA synthetas 70.0 18 0.00063 25.0 6.7 58 9-70 297-355 (401)
26 1wu7_A Histidyl-tRNA synthetas 68.6 25 0.00086 24.5 7.2 58 9-70 331-389 (434)
27 2xzd_B Caspase-3; hydrolase-pr 68.3 1.6 5.6E-05 26.0 0.9 25 14-38 28-52 (118)
28 3hjn_A DTMP kinase, thymidylat 67.8 10 0.00034 23.8 4.6 45 14-59 2-48 (197)
29 4g85_A Histidine-tRNA ligase, 66.4 24 0.00082 25.4 6.8 60 8-70 417-477 (517)
30 4g84_A Histidine--tRNA ligase, 66.1 21 0.00073 24.9 6.4 60 8-70 364-424 (464)
31 3sm9_A Mglur3, metabotropic gl 65.3 5.3 0.00018 28.3 3.2 54 13-66 188-244 (479)
32 3rjm_B Caspase-2; caspase-2, c 64.8 1.9 6.4E-05 25.7 0.6 30 9-38 14-52 (117)
33 1bax_A M-PMV MA, M-PMV matrix 64.2 3.9 0.00013 23.7 1.9 18 24-41 9-26 (94)
34 3net_A Histidyl-tRNA synthetas 63.6 19 0.00066 25.6 5.9 61 8-72 369-429 (465)
35 4e51_A Histidine--tRNA ligase; 62.2 19 0.00065 25.7 5.6 60 9-69 353-414 (467)
36 1qe0_A Histidyl-tRNA synthetas 61.1 23 0.00079 24.4 5.8 59 8-70 327-386 (420)
37 3lc0_A Histidyl-tRNA synthetas 60.5 29 0.001 24.8 6.3 60 9-72 360-419 (456)
38 2i4l_A Proline-tRNA ligase; al 59.4 20 0.00069 25.4 5.3 59 9-70 364-425 (458)
39 1htt_A Histidyl-tRNA synthetas 58.5 26 0.00089 24.2 5.7 59 8-70 325-386 (423)
40 1jdp_A NPR-C, atrial natriuret 58.4 15 0.00052 25.0 4.5 59 12-70 156-218 (441)
41 1f8y_A Nucleoside 2-deoxyribos 56.8 8.5 0.00029 23.7 2.7 60 12-73 5-88 (157)
42 3ks9_A Mglur1, metabotropic gl 55.2 12 0.00039 26.6 3.5 51 13-63 200-252 (496)
43 3h5l_A Putative branched-chain 53.5 23 0.00078 23.9 4.7 59 12-71 166-225 (419)
44 2e4u_A Metabotropic glutamate 52.4 17 0.00059 25.9 4.0 36 13-48 189-224 (555)
45 1nyr_A Threonyl-tRNA synthetas 52.4 28 0.00097 25.8 5.3 59 9-70 544-603 (645)
46 2a5l_A Trp repressor binding p 52.3 32 0.0011 20.8 4.9 54 24-78 20-85 (200)
47 2lpy_A Matrix protein P10; GAG 51.8 7.1 0.00024 23.6 1.6 18 24-41 8-25 (124)
48 1nj1_A PROR, proline-tRNA synt 51.6 16 0.00054 26.5 3.7 59 9-70 313-376 (501)
49 3ikl_A DNA polymerase subunit 50.7 68 0.0023 23.2 6.9 51 21-74 361-414 (459)
50 4f21_A Carboxylesterase/phosph 50.7 35 0.0012 21.8 5.0 36 9-44 182-219 (246)
51 2zt5_A Glycyl-tRNA synthetase; 49.8 73 0.0025 24.2 7.2 59 9-70 558-618 (693)
52 3hly_A Flavodoxin-like domain; 48.2 41 0.0014 20.0 5.4 49 24-76 15-63 (161)
53 4h0c_A Phospholipase/carboxyle 47.5 45 0.0015 20.5 5.1 36 9-44 150-187 (210)
54 1ati_A Glycyl-tRNA synthetase; 46.5 49 0.0017 23.9 5.7 58 9-70 397-458 (505)
55 3n0x_A Possible substrate bind 46.5 34 0.0012 22.7 4.6 53 12-65 143-196 (374)
56 3t7y_A YOP proteins translocat 46.1 24 0.00081 20.3 3.2 39 25-63 42-88 (97)
57 2wem_A Glutaredoxin-related pr 45.3 25 0.00085 20.3 3.3 29 51-81 7-35 (118)
58 3pzy_A MOG; ssgcid, seattle st 45.2 18 0.00062 22.2 2.8 43 25-68 27-71 (164)
59 1byr_A Protein (endonuclease); 44.6 17 0.0006 21.1 2.6 46 25-70 14-60 (155)
60 2j3l_A Prolyl-tRNA synthetase; 44.5 49 0.0017 24.0 5.4 59 9-70 469-530 (572)
61 3kg2_A Glutamate receptor 2; I 44.3 37 0.0013 25.1 4.8 51 13-65 124-179 (823)
62 1qf6_A THRRS, threonyl-tRNA sy 44.2 54 0.0018 24.5 5.7 58 9-70 538-596 (642)
63 1b93_A Protein (methylglyoxal 44.1 20 0.00067 22.2 2.8 61 11-74 12-91 (152)
64 3bzy_B ESCU; auto cleavage pro 43.6 30 0.001 19.2 3.3 39 25-63 27-73 (83)
65 3o21_A Glutamate receptor 3; p 43.1 70 0.0024 21.5 5.8 51 13-65 133-185 (389)
66 3h6g_A Glutamate receptor, ion 43.0 36 0.0012 22.7 4.3 42 24-66 151-192 (395)
67 3kbq_A Protein TA0487; structu 42.7 25 0.00085 22.0 3.2 43 25-68 23-67 (172)
68 2oe3_A Thioredoxin-3; electron 42.7 32 0.0011 18.9 3.5 22 55-81 21-42 (114)
69 3a32_A Probable threonyl-tRNA 42.2 42 0.0014 23.9 4.7 58 10-70 338-403 (471)
70 2d00_A V-type ATP synthase sub 41.5 42 0.0014 19.3 3.9 13 63-75 44-56 (109)
71 1hc7_A Prolyl-tRNA synthetase; 41.1 95 0.0032 22.2 6.4 60 9-70 286-350 (477)
72 3l4e_A Uncharacterized peptida 41.1 67 0.0023 20.3 6.8 57 10-69 28-85 (206)
73 2fcj_A Small toprim domain pro 40.7 8.2 0.00028 23.0 0.7 39 26-65 40-78 (119)
74 4fhz_A Phospholipase/carboxyle 40.5 61 0.0021 21.2 5.0 36 9-44 204-241 (285)
75 3pid_A UDP-glucose 6-dehydroge 40.4 25 0.00087 25.1 3.3 50 20-69 347-401 (432)
76 3czx_A Putative N-acetylmuramo 39.8 66 0.0023 19.9 4.9 46 24-70 31-77 (182)
77 1q8d_A GDNF family receptor al 39.2 5.7 0.0002 23.5 -0.2 13 69-81 57-75 (108)
78 1vmd_A MGS, methylglyoxal synt 39.2 24 0.00083 22.5 2.8 61 11-74 28-107 (178)
79 3n75_A LDC, lysine decarboxyla 39.2 51 0.0017 25.1 4.9 42 25-72 17-58 (715)
80 1ydg_A Trp repressor binding p 38.9 20 0.00067 22.1 2.3 18 24-41 21-38 (211)
81 4hvc_A Bifunctional glutamate/ 37.7 33 0.0011 25.1 3.6 49 7-55 305-364 (519)
82 3ojo_A CAP5O; rossmann fold, c 37.3 47 0.0016 23.6 4.3 52 20-72 330-383 (431)
83 1a9x_A Carbamoyl phosphate syn 37.1 56 0.0019 25.8 5.0 58 12-74 944-1018(1073)
84 3en0_A Cyanophycinase; serine 37.0 70 0.0024 21.6 5.0 55 13-69 60-116 (291)
85 1g5h_A Mitochondrial DNA polym 36.6 84 0.0029 22.4 5.6 61 8-70 336-401 (454)
86 2hfv_A Hypothetical protein RP 35.8 42 0.0014 19.3 3.2 28 17-46 27-54 (97)
87 3c01_E Surface presentation of 35.6 44 0.0015 19.1 3.3 39 25-63 27-73 (98)
88 2is8_A Molybdopterin biosynthe 35.5 33 0.0011 20.8 2.9 42 26-68 22-67 (164)
89 1dlj_A UDP-glucose dehydrogena 35.4 65 0.0022 22.3 4.7 50 20-69 324-379 (402)
90 1z0s_A Probable inorganic poly 34.9 87 0.003 21.0 5.1 30 13-46 32-61 (278)
91 3snr_A Extracellular ligand-bi 34.8 51 0.0017 21.2 3.9 40 25-65 150-190 (362)
92 4a7p_A UDP-glucose dehydrogena 34.1 42 0.0014 23.9 3.6 53 20-72 337-397 (446)
93 2q62_A ARSH; alpha/beta, flavo 34.1 96 0.0033 20.1 6.2 53 25-78 52-112 (247)
94 2yan_A Glutaredoxin-3; oxidore 33.9 27 0.00094 19.1 2.2 26 54-81 7-32 (105)
95 3i09_A Periplasmic branched-ch 33.7 66 0.0023 21.1 4.4 41 25-66 155-196 (375)
96 1h4v_B Histidyl-tRNA synthetas 33.4 1.1E+02 0.0039 20.9 5.7 58 8-70 326-384 (421)
97 1h1j_S THO1 protein; SAP domai 33.1 19 0.00065 18.2 1.3 33 27-64 10-42 (51)
98 4gpa_A Glutamate receptor 4; P 33.0 97 0.0033 20.1 5.1 39 25-63 144-182 (389)
99 1tk9_A Phosphoheptose isomeras 32.6 38 0.0013 20.2 2.9 27 13-42 115-141 (188)
100 1wik_A Thioredoxin-like protei 32.3 31 0.001 19.1 2.2 10 56-65 7-16 (109)
101 3p45_A Caspase-6; protease, hu 32.3 95 0.0032 19.5 5.7 48 26-74 70-122 (179)
102 1mkz_A Molybdenum cofactor bio 31.7 38 0.0013 20.8 2.8 42 25-67 28-73 (172)
103 3qek_A NMDA glutamate receptor 31.7 58 0.002 21.6 3.9 29 12-40 141-169 (384)
104 1y5e_A Molybdenum cofactor bio 31.7 27 0.00092 21.4 2.0 43 25-68 31-77 (169)
105 2gzs_A IROE protein; enterobac 31.7 86 0.0029 20.0 4.6 40 10-51 196-245 (278)
106 1q9u_A Uncharacterized protein 31.6 40 0.0014 19.4 2.8 21 24-44 16-36 (130)
107 2nn3_C Caspase-1; cysteine pro 31.6 25 0.00087 24.0 2.0 29 10-38 207-244 (310)
108 1gcy_A Glucan 1,4-alpha-maltot 31.1 43 0.0015 24.0 3.3 34 7-44 74-112 (527)
109 2yva_A DNAA initiator-associat 30.9 42 0.0014 20.3 2.9 27 13-42 114-140 (196)
110 3f3q_A Thioredoxin-1; His TAG, 30.9 37 0.0013 18.3 2.4 19 54-72 14-32 (109)
111 3uh0_A Threonyl-tRNA synthetas 30.8 1.4E+02 0.0049 21.2 6.0 59 9-70 344-419 (460)
112 4f06_A Extracellular ligand-bi 30.0 70 0.0024 21.1 4.1 53 12-65 141-194 (371)
113 4hlc_A DTMP kinase, thymidylat 29.9 91 0.0031 19.4 4.4 31 13-44 3-35 (205)
114 2ohh_A Type A flavoprotein FPR 29.9 1.2E+02 0.0041 20.3 5.3 63 11-77 257-320 (404)
115 2vt1_B Surface presentation of 29.8 34 0.0012 19.4 2.1 39 25-63 27-73 (93)
116 1u3d_A Cryptochrome 1 apoprote 29.6 76 0.0026 22.8 4.4 45 27-75 67-111 (509)
117 2fz0_A R-snare NYV1P, V-snare 29.4 87 0.003 19.3 4.0 25 13-37 91-115 (149)
118 1zrj_A E1B-55KDA-associated pr 29.3 24 0.00083 17.8 1.3 14 27-40 15-28 (50)
119 1tuo_A Putative phosphomannomu 29.3 1.4E+02 0.0049 21.1 5.7 57 11-71 49-107 (464)
120 2h54_A Caspase-1; allosteric s 29.2 1.1E+02 0.0036 19.1 5.3 49 25-74 65-119 (178)
121 4gxt_A A conserved functionall 29.0 42 0.0015 23.3 2.9 33 12-44 211-243 (385)
122 1jeo_A MJ1247, hypothetical pr 29.0 51 0.0018 19.6 3.0 28 13-43 87-114 (180)
123 4gqr_A Pancreatic alpha-amylas 28.9 33 0.0011 23.5 2.3 19 26-44 78-96 (496)
124 2pjk_A 178AA long hypothetical 28.8 41 0.0014 20.9 2.5 43 25-68 40-86 (178)
125 2j32_A Caspase-3; Pro-caspase3 28.8 21 0.00072 23.4 1.2 29 10-38 162-199 (250)
126 2xhz_A KDSD, YRBH, arabinose 5 28.8 49 0.0017 19.7 2.9 28 13-43 101-128 (183)
127 3hyn_A Putative signal transdu 28.7 82 0.0028 20.3 4.0 53 24-76 67-120 (189)
128 3go6_A Ribokinase RBSK; phosph 28.6 1.2E+02 0.0043 19.7 6.4 42 25-68 156-197 (310)
129 3ljs_A Fructokinase; fructokia 28.2 1.3E+02 0.0044 19.7 5.7 43 26-68 148-195 (338)
130 2kvu_A MKL/myocardin-like prot 27.9 25 0.00087 19.3 1.3 15 27-41 31-45 (75)
131 1x92_A APC5045, phosphoheptose 27.8 51 0.0017 20.0 2.9 31 10-43 113-145 (199)
132 3n0w_A ABC branched chain amin 27.8 62 0.0021 21.3 3.4 41 25-66 157-198 (379)
133 3dlo_A Universal stress protei 27.8 89 0.003 18.0 3.9 46 25-71 78-123 (155)
134 2vim_A Thioredoxin, TRX; thior 27.5 67 0.0023 16.5 3.0 17 56-72 9-27 (104)
135 3lop_A Substrate binding perip 27.4 63 0.0022 21.1 3.4 41 25-66 156-197 (364)
136 3lkb_A Probable branched-chain 27.4 80 0.0027 20.8 4.0 41 25-66 158-199 (392)
137 2xbl_A Phosphoheptose isomeras 27.3 53 0.0018 19.8 2.9 25 14-41 122-146 (198)
138 2h1v_A Ferrochelatase; rossman 27.1 1.4E+02 0.0047 20.0 5.1 51 26-78 63-120 (310)
139 3tco_A Thioredoxin (TRXA-1); d 27.1 55 0.0019 17.0 2.7 16 57-72 14-29 (109)
140 1m72_A Caspase-1; caspase, cys 26.9 19 0.00064 24.0 0.7 29 10-38 179-216 (272)
141 4aef_A Neopullulanase (alpha-a 26.9 55 0.0019 24.1 3.3 39 6-45 265-306 (645)
142 1np7_A DNA photolyase; protein 26.7 1.4E+02 0.0048 21.2 5.3 45 27-76 67-111 (489)
143 3od5_A Caspase-6; caspase doma 26.4 19 0.00066 24.0 0.7 28 11-38 181-217 (278)
144 3sho_A Transcriptional regulat 26.3 51 0.0018 19.7 2.7 28 13-43 92-119 (187)
145 2j07_A Deoxyribodipyrimidine p 26.3 1E+02 0.0035 21.6 4.5 45 27-76 54-98 (420)
146 3g79_A NDP-N-acetyl-D-galactos 26.3 60 0.0021 23.4 3.3 52 20-71 368-422 (478)
147 2j23_A Thioredoxin; immune pro 26.2 54 0.0018 18.0 2.6 18 55-72 24-41 (121)
148 3sir_A Caspase; hydrolase; 2.6 26.1 18 0.00061 23.9 0.5 29 10-38 169-206 (259)
149 3i45_A Twin-arginine transloca 26.0 1.1E+02 0.0038 20.1 4.5 59 12-70 144-204 (387)
150 3aon_B V-type sodium ATPase su 26.0 19 0.00065 21.1 0.6 9 28-36 35-43 (115)
151 1nw9_B Caspase 9, apoptosis-re 25.7 20 0.00067 23.9 0.6 30 9-38 198-236 (277)
152 2e0q_A Thioredoxin; electron t 25.6 62 0.0021 16.5 2.7 15 58-72 10-24 (104)
153 4evq_A Putative ABC transporte 25.3 96 0.0033 20.1 4.0 40 25-65 166-206 (375)
154 2i4r_A V-type ATP synthase sub 25.1 34 0.0012 19.6 1.5 24 53-76 41-64 (102)
155 3t5x_B 26S proteasome complex 25.1 45 0.0015 18.1 1.9 19 22-40 48-66 (70)
156 2jli_A YSCU, YOP proteins tran 25.0 59 0.002 19.4 2.6 39 25-63 71-117 (123)
157 3bzs_A ESCU; auto cleavage pro 24.7 59 0.002 19.7 2.6 39 25-63 81-127 (137)
158 2wzn_A TET3, 354AA long hypoth 24.6 62 0.0021 20.3 2.9 21 25-45 31-51 (354)
159 1nbw_B Glycerol dehydratase re 24.6 1.1E+02 0.0039 17.9 5.1 62 10-72 5-68 (117)
160 4eyg_A Twin-arginine transloca 24.5 1E+02 0.0036 19.9 4.1 40 25-65 154-194 (368)
161 3d7n_A Flavodoxin, WRBA-like p 24.5 59 0.002 19.8 2.7 46 24-76 21-66 (193)
162 3czq_A Putative polyphosphate 24.2 51 0.0017 22.5 2.5 50 12-61 86-140 (304)
163 1j3m_A The conserved hypotheti 24.2 52 0.0018 19.0 2.3 21 24-44 13-33 (129)
164 1mek_A Protein disulfide isome 24.1 66 0.0023 17.0 2.7 15 58-72 18-32 (120)
165 3rfq_A Pterin-4-alpha-carbinol 23.9 60 0.0021 20.4 2.7 43 25-68 49-94 (185)
166 3eaf_A ABC transporter, substr 23.9 1.1E+02 0.0036 20.3 4.1 46 25-71 157-205 (391)
167 3u7r_A NADPH-dependent FMN red 23.8 80 0.0027 19.6 3.3 23 55-78 59-81 (190)
168 1syr_A Thioredoxin; SGPP, stru 23.8 91 0.0031 16.5 3.5 18 55-72 17-34 (112)
169 1f1j_A Caspase-7 protease; cas 23.8 23 0.00079 24.1 0.7 29 10-38 218-255 (305)
170 3saj_A Glutamate receptor 1; r 23.7 37 0.0013 22.7 1.7 31 13-44 131-161 (384)
171 1m3s_A Hypothetical protein YC 23.6 69 0.0024 19.1 2.9 28 13-43 84-111 (186)
172 1g94_A Alpha-amylase; beta-alp 23.6 47 0.0016 23.1 2.3 19 26-44 66-84 (448)
173 1e2b_A Enzyme IIB-cellobiose; 23.5 69 0.0024 18.1 2.7 45 24-76 17-61 (106)
174 3fk8_A Disulphide isomerase; A 23.5 56 0.0019 18.0 2.3 18 54-71 19-36 (133)
175 5nul_A Flavodoxin; electron tr 23.5 88 0.003 17.6 3.2 33 8-42 79-111 (138)
176 4f11_A Gamma-aminobutyric acid 23.3 1.5E+02 0.0051 19.9 4.8 51 13-66 157-207 (433)
177 2jlj_A YSCU, YOP proteins tran 23.0 66 0.0023 19.7 2.6 39 25-63 80-126 (144)
178 3hsy_A Glutamate receptor 2; l 22.9 1E+02 0.0035 20.4 3.9 32 13-45 124-155 (376)
179 2vm1_A Thioredoxin, thioredoxi 22.9 57 0.002 17.3 2.2 7 26-32 17-23 (118)
180 2xry_A Deoxyribodipyrimidine p 22.7 1.3E+02 0.0044 21.4 4.5 44 27-75 94-137 (482)
181 2l82_A Designed protein OR32; 22.7 1.1E+02 0.0039 18.2 3.6 32 11-44 78-109 (162)
182 3trj_A Phosphoheptose isomeras 22.6 72 0.0025 19.7 2.9 30 10-42 114-145 (201)
183 3rpf_A Molybdopterin synthase 22.5 76 0.0026 19.4 2.9 30 25-54 60-92 (148)
184 2dko_A Caspase-3; low barrier 22.4 1.3E+02 0.0046 17.9 5.0 47 26-73 42-93 (146)
185 4aie_A Glucan 1,6-alpha-glucos 22.4 51 0.0017 23.2 2.3 37 8-45 61-100 (549)
186 1wpc_A Glucan 1,4-alpha-maltoh 22.2 52 0.0018 23.1 2.3 20 26-45 84-103 (485)
187 3ipc_A ABC transporter, substr 22.1 1E+02 0.0034 19.9 3.6 42 25-66 153-194 (356)
188 1ua7_A Alpha-amylase; beta-alp 22.0 59 0.002 22.4 2.5 20 26-45 76-95 (422)
189 3gx8_A Monothiol glutaredoxin- 22.0 65 0.0022 18.4 2.4 34 29-62 8-42 (121)
190 3hww_A 2-succinyl-5-enolpyruvy 22.0 1.7E+02 0.0058 21.0 5.1 36 25-64 9-44 (556)
191 2g2c_A Putative molybdenum cof 22.0 64 0.0022 19.6 2.5 42 26-68 26-74 (167)
192 3rhb_A ATGRXC5, glutaredoxin-C 22.0 83 0.0029 17.1 2.8 13 53-65 8-20 (113)
193 1j23_A HEF nuclease, ATP-depen 21.9 46 0.0016 20.0 1.7 28 26-54 14-41 (143)
194 1di6_A MOGA, molybdenum cofact 21.9 35 0.0012 21.6 1.2 42 26-67 24-70 (195)
195 1ud2_A Amylase, alpha-amylase; 21.8 53 0.0018 23.0 2.3 20 26-45 82-101 (480)
196 3e4c_A Caspase-1; zymogen, inf 21.8 27 0.00091 23.7 0.7 29 10-38 222-259 (302)
197 3m9j_A Thioredoxin; oxidoreduc 21.8 95 0.0032 16.0 3.0 18 55-72 9-28 (105)
198 1jwq_A N-acetylmuramoyl-L-alan 21.7 1.5E+02 0.0051 18.2 6.2 47 24-70 31-79 (179)
199 3abq_B Ethanolamine ammonia-ly 21.7 71 0.0024 22.1 2.8 45 24-73 190-239 (306)
200 4g0m_A Protein argonaute 2; MI 21.7 1.4E+02 0.0046 17.7 4.7 18 24-41 30-47 (150)
201 1kjn_A MTH0777; hypotethical p 21.7 1.5E+02 0.0053 18.4 4.1 50 9-64 77-128 (157)
202 1qtn_A Caspase-8; apoptosis, d 21.6 1.5E+02 0.0051 18.1 5.7 48 26-74 56-108 (164)
203 4ehd_A Caspase-3; caspase, apo 21.5 27 0.00094 23.4 0.7 29 10-38 190-227 (277)
204 3bh4_A Alpha-amylase; calcium, 21.4 55 0.0019 23.0 2.3 20 26-45 80-99 (483)
205 1ht6_A AMY1, alpha-amylase iso 21.2 57 0.0019 22.4 2.3 20 26-45 70-89 (405)
206 1mxg_A Alpha amylase; hyperthe 21.1 57 0.0019 22.8 2.3 21 25-45 87-107 (435)
207 4as2_A Phosphorylcholine phosp 21.1 58 0.002 22.1 2.3 19 26-44 147-165 (327)
208 4edh_A DTMP kinase, thymidylat 21.0 1.6E+02 0.0055 18.4 4.8 31 13-43 7-39 (213)
209 2ko1_A CTR148A, GTP pyrophosph 21.0 98 0.0033 15.8 3.3 30 11-41 4-33 (88)
210 1vim_A Hypothetical protein AF 20.9 58 0.002 20.0 2.2 31 10-43 89-121 (200)
211 2wq7_A RE11660P; lyase-DNA com 20.8 1.7E+02 0.0059 21.2 4.9 44 27-75 91-134 (543)
212 3svl_A Protein YIEF; E. coli C 20.7 98 0.0033 19.1 3.2 23 55-78 64-86 (193)
213 3qfa_C Thioredoxin; protein-pr 20.7 1E+02 0.0036 16.6 3.1 18 55-72 20-39 (116)
214 2ql9_A Caspase-7; cysteine pro 20.6 1.6E+02 0.0056 18.2 4.3 48 26-74 70-122 (173)
215 4es6_A Uroporphyrinogen-III sy 20.6 1.2E+02 0.0041 19.1 3.7 45 29-73 147-194 (254)
216 2yzu_A Thioredoxin; redox prot 20.6 86 0.0029 16.1 2.6 14 59-72 13-26 (109)
217 3h11_B Caspase-8; cell death, 20.5 1.9E+02 0.0066 19.0 5.7 47 26-73 50-101 (271)
218 1zma_A Bacterocin transport ac 20.4 1E+02 0.0036 16.5 3.0 22 55-81 20-41 (118)
219 1jr2_A Uroporphyrinogen-III sy 20.4 1.1E+02 0.0036 19.9 3.5 45 29-73 171-219 (286)
220 2kx2_A MTH1821, putative uncha 20.3 1E+02 0.0034 17.6 2.8 38 13-50 21-67 (96)
221 2l69_A Rossmann 2X3 fold prote 20.3 1.4E+02 0.0048 17.3 3.9 36 25-63 13-48 (134)
222 3idf_A USP-like protein; unive 20.3 1.2E+02 0.0041 16.6 3.5 41 26-69 67-107 (138)
223 1hvx_A Alpha-amylase; hydrolas 20.3 60 0.002 23.1 2.3 20 26-45 83-102 (515)
224 2pbq_A Molybdenum cofactor bio 20.3 98 0.0033 19.0 3.1 39 27-67 27-72 (178)
225 3sg0_A Extracellular ligand-bi 20.2 91 0.0031 20.2 3.1 40 25-65 174-214 (386)
226 3hdp_A Glyoxalase-I; glutathio 20.2 98 0.0033 16.7 2.9 26 14-44 80-105 (133)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.95 E-value=9.5e-30 Score=165.98 Aligned_cols=78 Identities=51% Similarity=0.869 Sum_probs=58.8
Q ss_pred CCCCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 4 SYRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 4 ~s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
||+.+++|||||||+++|++..|+++|+.+|+++||++|+|++ +++|+.|.++|.+||++|+++|+|+|+||++|.||
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WC 80 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWC 80 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhH
Confidence 3457899999999999999889999999999999999999987 99999999999999999999999999999999999
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.95 E-value=3.4e-29 Score=166.42 Aligned_cols=76 Identities=51% Similarity=0.854 Sum_probs=71.7
Q ss_pred CCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
++.++|||||||+++|++..|+.+|+.+|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||+.|.||
T Consensus 31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC 107 (204)
T 3ozi_A 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC 107 (204)
T ss_dssp ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHH
Confidence 57899999999999999888999999999999999999987 99999999999999999999999999999999999
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.91 E-value=9.2e-26 Score=143.34 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=70.5
Q ss_pred CCCCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
++.++|||||||+++| +..|+.+|..+|+++|+++|+|++ +.+|+.+.++|.++|++|+++|+|+|++|+.|.||
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc 91 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWP 91 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCC
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHH
Confidence 3468999999999999 457999999999999999999998 99999999999999999999999999999999999
No 4
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.88 E-value=2.6e-24 Score=136.38 Aligned_cols=73 Identities=25% Similarity=0.478 Sum_probs=69.0
Q ss_pred CCCcccEEEeceeccCcccHHHH-HHHHHhcC--CceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 7 NNKKYDVFVSFRGEDTRDNFTSH-LYSTLCRQ--NIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 7 ~~~~~dVFISy~~~D~~~~~~~~-L~~~L~~~--g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
.++.|||||||+++|. .|+.+ |..+|++. |+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc 78 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWX 78 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchH
Confidence 4689999999999995 79996 99999976 999999998 99999999999999999999999999999999999
No 5
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.87 E-value=1.2e-23 Score=136.95 Aligned_cols=75 Identities=24% Similarity=0.538 Sum_probs=69.5
Q ss_pred CCCCCcccEEEeceeccCcccHHHH-HHHHHhc--CCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCC
Q 044867 5 YRNNKKYDVFVSFRGEDTRDNFTSH-LYSTLCR--QNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIW 80 (81)
Q Consensus 5 s~~~~~~dVFISy~~~D~~~~~~~~-L~~~L~~--~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~w 80 (81)
...++.|||||||+++|. .|+.. |.++|++ +|+++|+|++ +.+|+.+.++|.++|++|+++|+|+||+|+.|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 357889999999999994 79975 9999998 8999999998 9999999999999999999999999999999999
Q ss_pred C
Q 044867 81 C 81 (81)
Q Consensus 81 C 81 (81)
|
T Consensus 108 c 108 (178)
T 2j67_A 108 C 108 (178)
T ss_dssp G
T ss_pred H
Confidence 9
No 6
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.87 E-value=9.7e-25 Score=138.26 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=56.3
Q ss_pred CCCCCcccEEEeceeccCcccHHHHHHHHHhc--CCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 5 YRNNKKYDVFVSFRGEDTRDNFTSHLYSTLCR--QNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 5 s~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~--~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
+...+.|||||||+++|. .|+.+|..+|++ .|+++|++++ +.+|+.+.++|.++|++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 457889999999999995 589999999998 5999999998 99999999999999999999999999999999998
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.86 E-value=4.6e-23 Score=132.05 Aligned_cols=73 Identities=23% Similarity=0.432 Sum_probs=66.1
Q ss_pred CcccEEEeceeccC---------cccHHHHHHH-HHh-cCCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 9 KKYDVFVSFRGEDT---------RDNFTSHLYS-TLC-RQNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 9 ~~~dVFISy~~~D~---------~~~~~~~L~~-~L~-~~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
+.|||||||+++|. ++.|+.+|.. .|+ +.|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 2468888665 699 79999999998 999999999999999999999999999997
Q ss_pred -cCCCC
Q 044867 77 -SSIWC 81 (81)
Q Consensus 77 -~S~wC 81 (81)
.|.||
T Consensus 81 ~~S~wc 86 (159)
T 1t3g_A 81 VRRGWS 86 (159)
T ss_dssp HTTTTH
T ss_pred hcChHH
Confidence 99999
No 8
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.86 E-value=1.5e-23 Score=134.42 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=69.1
Q ss_pred CCCCcccEEEeceeccCcccHHHHHHHHHhcC--CceEEecCC-CCCCCcchHHHHHHHH-hcCeEEEEecCCCCcCCCC
Q 044867 6 RNNKKYDVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ-LNRGDEISESLLNAIQ-ASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~-~~~G~~~~~~i~~aI~-~S~~~I~v~S~~y~~S~wC 81 (81)
+.++.|||||||+++| ..|+.+|..+|+++ |+++|+|++ +.+|+.+.++|.++|+ +|+++|+|+|++|++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 4578999999999999 57999999999974 699999998 9999999999999999 7999999999999999998
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=131.66 Aligned_cols=74 Identities=20% Similarity=0.402 Sum_probs=68.3
Q ss_pred CCCCcccEEEeceeccCcccHH-HHHHHHHhc-----CCceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 6 RNNKKYDVFVSFRGEDTRDNFT-SHLYSTLCR-----QNIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~~~~~-~~L~~~L~~-----~g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
...+.|||||||+++|. .|| ..|.+.|+. +|+++|++++ +.||+.+.++|.++|++|+++|+|+|++|++|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35789999999999995 566 779999984 5899999999 99999999999999999999999999999999
Q ss_pred CCC
Q 044867 79 IWC 81 (81)
Q Consensus 79 ~wC 81 (81)
.||
T Consensus 744 ~wc 746 (844)
T 3j0a_A 744 GWC 746 (844)
T ss_dssp TST
T ss_pred hHH
Confidence 999
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.96 E-value=1.1e-06 Score=53.05 Aligned_cols=55 Identities=2% Similarity=-0.016 Sum_probs=42.6
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
...|++||||..+| . ...|...|.+.|+. |.| +.|+.|+++|++.++...+|+||
T Consensus 2 ~~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv 56 (111)
T 1eiw_A 2 TAEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEI 56 (111)
T ss_dssp CCCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHH
T ss_pred CceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHH
Confidence 45789999999998 2 56677777655664 333 56788999999999999999886
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.33 E-value=0.025 Score=36.89 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=47.1
Q ss_pred cccEEEec--------------eeccCcccHHHHHHHHHhcCCceEEecCC-C----C---C-CCcchHHHHHHHHhcCe
Q 044867 10 KYDVFVSF--------------RGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-L----N---R-GDEISESLLNAIQASAI 66 (81)
Q Consensus 10 ~~dVFISy--------------~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~----~---~-G~~~~~~i~~aI~~S~~ 66 (81)
+--+||+| ..+| ......|+.--....+-.|.|.+ . . . -+.|.+.|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578888 3444 34555555544433444567753 2 1 2 34688999999999999
Q ss_pred EEEEecCCCCcCCC
Q 044867 67 SVIVFSEGYASSIW 80 (81)
Q Consensus 67 ~I~v~S~~y~~S~w 80 (81)
+|+++|++...|.|
T Consensus 83 vIllIs~~T~~s~~ 96 (189)
T 3hyn_A 83 IILFLSSITANSRA 96 (189)
T ss_dssp EEEECCTTCCCCHH
T ss_pred EEEEEecCccccch
Confidence 99999999998876
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=94.23 E-value=0.083 Score=33.30 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhcCCceEEecCC-C-CCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQ-L-NRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~-~-~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
.+..++...|+++|+.++.-.+ - ..++.+.+.=.++|++|+++|++++|
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldp 77 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSP 77 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCC
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecC
Confidence 6889999999999999888654 2 12233444447899999999999985
No 13
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=87.95 E-value=1.8 Score=26.26 Aligned_cols=61 Identities=8% Similarity=0.120 Sum_probs=39.8
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEec--------C-----C-CC---CC-C-cchHHHHHHHHhcCeEEEEecC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID--------D-----Q-LN---RG-D-EISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d--------~-----~-~~---~G-~-~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
||||....|. .-+-.+...|.+.|++++-- + + +. -| + .-.++|.+.|++=.+-+||.+|
T Consensus 27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 9999988774 34456777788888876611 1 1 11 12 1 0015788999999999999988
Q ss_pred CC
Q 044867 74 GY 75 (81)
Q Consensus 74 ~y 75 (81)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 14
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=87.57 E-value=2 Score=26.61 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=42.2
Q ss_pred CCCCCCCCCcccEEEeceec-cCc-ccHHHHHHHHHhcCCceEEecCCCCC-----CC-------cchHHHHHHHHhcCe
Q 044867 1 MASSYRNNKKYDVFVSFRGE-DTR-DNFTSHLYSTLCRQNIQTFIDDQLNR-----GD-------EISESLLNAIQASAI 66 (81)
Q Consensus 1 ~~~~s~~~~~~dVFISy~~~-D~~-~~~~~~L~~~L~~~g~~v~~d~~~~~-----G~-------~~~~~i~~aI~~S~~ 66 (81)
||.++- +....|||+=.-. +.. .....++...|+++| .|+.+....+ |. .+...=.+.|++|++
T Consensus 3 ~~~~~~-~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~ 80 (165)
T 2khz_A 3 MAASGE-QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADV 80 (165)
T ss_dssp CCCCSS-CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSE
T ss_pred cccCCC-CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCE
Confidence 555442 3345699983322 111 125688999999999 8765433222 21 122333578999999
Q ss_pred EEEEec
Q 044867 67 SVIVFS 72 (81)
Q Consensus 67 ~I~v~S 72 (81)
+|+++.
T Consensus 81 vva~~~ 86 (165)
T 2khz_A 81 VVAEVT 86 (165)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 999986
No 15
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=86.79 E-value=3.7 Score=24.95 Aligned_cols=63 Identities=10% Similarity=0.154 Sum_probs=42.4
Q ss_pred CCCCCcccE-EEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 5 YRNNKKYDV-FVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 5 s~~~~~~dV-FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
++..++.+| -|.-+.+. ..++..+...|+..|+++=+|. ..+++.+...|.++-. +....|+|
T Consensus 3 ~~~~~P~Qv~IlpVs~~~--~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 3 SGSSGPVDCSVIVVNKQT--KDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CCCCCCCTEEEEESSSGG--GHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCCCCeEEEEEeCcch--HHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 344555555 33343332 5799999999999999998874 1227888888877653 46666555
No 16
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=82.97 E-value=4.2 Score=25.31 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=37.0
Q ss_pred cEEEe--ceeccCcccHHHHHHHHHhcCCceEEecCCCC-----CCCc-------chHHHHHHHHhcCeEEEEec
Q 044867 12 DVFVS--FRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLN-----RGDE-------ISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 12 dVFIS--y~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~-----~G~~-------~~~~i~~aI~~S~~~I~v~S 72 (81)
.||++ +.+.....++..++.+.|++.| .|+-..--. .|+. +.+.=.+.|++|+++|++++
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~ 77 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT 77 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC
Confidence 46665 3232222367899999999999 664321111 2221 45556678999999999987
No 17
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=80.39 E-value=1.4 Score=24.09 Aligned_cols=37 Identities=8% Similarity=0.237 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCceEEecCC-CC---CCCcchHHHHHHHHh
Q 044867 27 TSHLYSTLCRQNIQTFIDDQ-LN---RGDEISESLLNAIQA 63 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~-~~---~G~~~~~~i~~aI~~ 63 (81)
+..|...|+++|+.+|.|.+ +. |-..+.+++...+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~ 47 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGG 47 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHH
Confidence 34677889999999999987 42 334567777766654
No 18
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=79.65 E-value=0.58 Score=26.45 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=20.2
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCc
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNI 39 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~ 39 (81)
|.||++.....+|+..|.+.|++++-
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~~ 46 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYAC 46 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHTT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhCC
Confidence 45666666668999999999987654
No 19
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=79.52 E-value=4.1 Score=25.48 Aligned_cols=62 Identities=11% Similarity=0.256 Sum_probs=41.3
Q ss_pred cEEEe---ceeccCcccHHHHHHHHHhcC--CceEEecCC--C--------CCC--------CcchHHHHHHHHhcCeEE
Q 044867 12 DVFVS---FRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQ--L--------NRG--------DEISESLLNAIQASAISV 68 (81)
Q Consensus 12 dVFIS---y~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~--~--------~~G--------~~~~~~i~~aI~~S~~~I 68 (81)
.||+. |+..+ .....++.+.|+++ |+.+|.-.+ . ..| ..|.+.=.++|++|+++|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 46666 44443 36889999999999 888876543 2 111 123444456799999999
Q ss_pred EEecCCC
Q 044867 69 IVFSEGY 75 (81)
Q Consensus 69 ~v~S~~y 75 (81)
+++...-
T Consensus 87 A~ldg~~ 93 (167)
T 1s2d_A 87 FLYDMDQ 93 (167)
T ss_dssp EEEESSS
T ss_pred EECCCCC
Confidence 9987543
No 20
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=77.47 E-value=0.69 Score=26.46 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=18.2
Q ss_pred EeceeccCcccHHHHHHHHHhcCCc
Q 044867 15 VSFRGEDTRDNFTSHLYSTLCRQNI 39 (81)
Q Consensus 15 ISy~~~D~~~~~~~~L~~~L~~~g~ 39 (81)
+||++.+...+|+..|.+.|++++-
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l~~~~~ 48 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSILEEHGK 48 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHTT
T ss_pred EeeecCCCCCeeHHHHHHHHHHhCC
Confidence 3444555557999999999987653
No 21
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=76.28 E-value=0.66 Score=26.54 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=21.8
Q ss_pred CcccEEEece---------eccCcccHHHHHHHHHhcCCc
Q 044867 9 KKYDVFVSFR---------GEDTRDNFTSHLYSTLCRQNI 39 (81)
Q Consensus 9 ~~~dVFISy~---------~~D~~~~~~~~L~~~L~~~g~ 39 (81)
..-|.+++|+ +.+...+|+..|.+.|++++-
T Consensus 11 ~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~~ 50 (95)
T 1qtn_B 11 DEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERCP 50 (95)
T ss_dssp TTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHGG
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhCC
Confidence 3556666654 444457899999999987653
No 22
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=75.38 E-value=0.84 Score=26.45 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=21.0
Q ss_pred CcccEEEece---------eccCcccHHHHHHHHHhcCC
Q 044867 9 KKYDVFVSFR---------GEDTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 9 ~~~dVFISy~---------~~D~~~~~~~~L~~~L~~~g 38 (81)
..-|.+++|+ +.....+|+..|.+.|++++
T Consensus 15 ~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 15 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 3456666554 44445799999999998765
No 23
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=74.49 E-value=0.92 Score=26.38 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=17.9
Q ss_pred EeceeccCcccHHHHHHHHHhcCC
Q 044867 15 VSFRGEDTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 15 ISy~~~D~~~~~~~~L~~~L~~~g 38 (81)
+||++.....+|+..|.+.|++++
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 444555555799999999998755
No 24
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=71.49 E-value=8.3 Score=24.07 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=34.7
Q ss_pred ccHHHHHHHHHhcC--CceEEecCC-CC----CCC----cchHHHHHHHHhcCeEEEEecC
Q 044867 24 DNFTSHLYSTLCRQ--NIQTFIDDQ-LN----RGD----EISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 24 ~~~~~~L~~~L~~~--g~~v~~d~~-~~----~G~----~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
..+..++.++|+++ |+.+|.-.+ -. ++. .+.+.=.++|++|+++|.++..
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg 79 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDG 79 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCS
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCC
Confidence 35788899999875 888887654 21 122 2444445679999999999853
No 25
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=70.00 E-value=18 Score=25.00 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=39.5
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---.++ ....+..|...|++.|+++-+|.+ +.++...+..|-. .....|+|
T Consensus 297 ap~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 297 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp CSSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 4578987754433 346788999999999999999852 4456666666554 44544444
No 26
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=68.56 E-value=25 Score=24.52 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=38.2
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|-.-.++. ...+..|...|++.|+++-+|.+ +..+...+..|-. .....|+|
T Consensus 331 ~p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 331 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 35889866544433 46788999999999999998853 3455555555443 45555544
No 27
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=68.34 E-value=1.6 Score=25.98 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=18.0
Q ss_pred EEeceeccCcccHHHHHHHHHhcCC
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g 38 (81)
|+||+......+|+..|.+.|++.+
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3444555555799999999998755
No 28
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=67.76 E-value=10 Score=23.79 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=30.4
Q ss_pred EEeceeccCc--ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHH
Q 044867 14 FVSFRGEDTR--DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLN 59 (81)
Q Consensus 14 FISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~ 59 (81)
||.+-+-|.. .+-+..|.+.|+++|+++-.-. .+.|..+.+.+.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t~~~~~ir~ 48 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGTETGEKIRK 48 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCCcHHHHHHH
Confidence 7888888743 5778999999999998875543 2234444444443
No 29
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=66.40 E-value=24 Score=25.37 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=39.3
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
....||||..-.++. ...+..|...|+++|+++-+|. ..+.++...+..|=+ ..+.+|+|
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECS--SSSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEE
Confidence 456789887654443 3567789999999999997763 233456666666554 34545444
No 30
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=66.14 E-value=21 Score=24.94 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=39.3
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
....+|+|....++. ...+-.|...|+++|+++-+|. ..+.++...+..|=+ ..+.+|+|
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~--~~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLY--KKNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCS--CSSCCHHHHHHHHHHHTCCEEEEC
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEe--CCCCCHHHHHHHHHHCCCCEEEEE
Confidence 356789988765553 3566789999999999987763 233456666665544 35544443
No 31
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=65.28 E-value=5.3 Score=28.26 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=33.4
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCC--C-CcchHHHHHHHHhcCe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNR--G-DEISESLLNAIQASAI 66 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~--G-~~~~~~i~~aI~~S~~ 66 (81)
|-|=+...|....++..|.++++++|+.+-..+.+.. + ..+...+.+.|+++..
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a 244 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNA 244 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTC
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCC
Confidence 4455554444457889999999999998766655433 2 2344444466765443
No 32
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=64.76 E-value=1.9 Score=25.66 Aligned_cols=30 Identities=7% Similarity=0.215 Sum_probs=20.8
Q ss_pred CcccEEEece---------eccCcccHHHHHHHHHhcCC
Q 044867 9 KKYDVFVSFR---------GEDTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 9 ~~~dVFISy~---------~~D~~~~~~~~L~~~L~~~g 38 (81)
..-|.+++|+ ......+|+..|.+.|++.+
T Consensus 14 ~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 14 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 4456666554 43445799999999998765
No 33
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=64.16 E-value=3.9 Score=23.65 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=16.5
Q ss_pred ccHHHHHHHHHhcCCceE
Q 044867 24 DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v 41 (81)
..|+..|...|++||++|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 379999999999999998
No 34
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=63.62 E-value=19 Score=25.61 Aligned_cols=61 Identities=7% Similarity=0.034 Sum_probs=39.7
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
....||+|-.-.++. ...+..+...|+++|+++-+|.. +.++...+..|-+.---.++|+-
T Consensus 369 ~~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG 429 (465)
T 3net_A 369 PTPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIG 429 (465)
T ss_dssp SCSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECC
T ss_pred CCCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 346799976644443 35778999999999999998852 35566666665543223344443
No 35
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=62.24 E-value=19 Score=25.73 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=40.3
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHHh-cCeEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQA-SAISVI 69 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~~-S~~~I~ 69 (81)
...+|+|-.-.++. ...+..+...|+++|++|-+|.. =..+.++...+..|-+. ...+|+
T Consensus 353 ~p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~ii 414 (467)
T 4e51_A 353 EGVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVI 414 (467)
T ss_dssp CCCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEE
T ss_pred CCCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEE
Confidence 45788876544432 35678999999999999999852 00267788888777653 444443
No 36
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=61.07 E-value=23 Score=24.44 Aligned_cols=59 Identities=17% Similarity=0.349 Sum_probs=38.1
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
..+++|+|-.-.++. ...+.+|...|++.|++|-+|.+ +..+...+..|-. .....|+|
T Consensus 327 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (420)
T 1qe0_A 327 EENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVI 386 (420)
T ss_dssp CCCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 456789876544332 35678999999999999999852 3455555555543 35544443
No 37
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=60.50 E-value=29 Score=24.77 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=38.9
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
...||||..-.++. ...+-.+...|+++|+++-++. .+.++...+..|-+.--..++|+-
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~---~~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIIL---DKKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECC---SCCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEec---CCCCHHHHHHHHHHcCCCEEEEEC
Confidence 35688776555543 2456788999999999998873 234567777776654333444443
No 38
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=59.44 E-value=20 Score=25.43 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=36.6
Q ss_pred CcccEEEecee--ccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRG--EDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~--~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---. .+.....+.+|.+.|++.|++|-+|.+ ++.+...+..|-. .....|+|
T Consensus 364 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~---~~~~g~k~~~ad~~g~p~~iiv 425 (458)
T 2i4l_A 364 APFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT---DQRAGAKFATADLIGIPWQIHV 425 (458)
T ss_dssp CSCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 35788776332 122246788999999999999999964 3344444444433 44444443
No 39
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=58.51 E-value=26 Score=24.24 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=39.0
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcC--CceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
..+++|+|-.-..+. ...+.+|...|+++ |+++-+|.+ +.++...+..|-. .....|+|
T Consensus 325 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 325 DPVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CCSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 356789887754432 45778999999999 999998853 3455555555543 45555544
No 40
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=58.43 E-value=15 Score=25.00 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=33.8
Q ss_pred cEEEeceeccCccc---HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 12 DVFVSFRGEDTRDN---FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 12 dVFISy~~~D~~~~---~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.|.|=|...+-... ++..|.++|+++|+.+-..+.+..++.-...+.+.|+ +.+++|+.
T Consensus 156 ~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~vii~~ 218 (441)
T 1jdp_A 156 RAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMC 218 (441)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEEEECTTSCCCHHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEEEecCCcccCHHHHHHHhhcCCcEEEEe
Confidence 35566655443445 7888999999999876543324333222344555554 45555544
No 41
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=56.84 E-value=8.5 Score=23.73 Aligned_cols=60 Identities=12% Similarity=0.207 Sum_probs=38.0
Q ss_pred cEEEe---ceeccCcccHHHHHHHHHhcCCc----eEEecCC-CC---------C---C----CcchHHHHHHHHhcCeE
Q 044867 12 DVFVS---FRGEDTRDNFTSHLYSTLCRQNI----QTFIDDQ-LN---------R---G----DEISESLLNAIQASAIS 67 (81)
Q Consensus 12 dVFIS---y~~~D~~~~~~~~L~~~L~~~g~----~v~~d~~-~~---------~---G----~~~~~~i~~aI~~S~~~ 67 (81)
.||+. |+..+ .....++..+|+++|. .+|.-.+ -. . + ..+.+.=.++|++|+++
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 46665 44443 3678899999999985 5555433 11 1 1 12334445678999999
Q ss_pred EEEecC
Q 044867 68 VIVFSE 73 (81)
Q Consensus 68 I~v~S~ 73 (81)
|.++..
T Consensus 83 vA~ldg 88 (157)
T 1f8y_A 83 LGVYIP 88 (157)
T ss_dssp EEECCG
T ss_pred EEEcCC
Confidence 999853
No 42
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=55.19 E-value=12 Score=26.62 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=32.1
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCC--CCCCcchHHHHHHHHh
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQL--NRGDEISESLLNAIQA 63 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~--~~G~~~~~~i~~aI~~ 63 (81)
|.|-++..|-...++..|.++++++|+.+-..+.+ ..++.-...+...|++
T Consensus 200 V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~ 252 (496)
T 3ks9_A 200 VSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRE 252 (496)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 44556555544578889999999999987666543 2343323345556665
No 43
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=53.47 E-value=23 Score=23.87 Aligned_cols=59 Identities=10% Similarity=0.042 Sum_probs=35.6
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCeEEEEe
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAISVIVF 71 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~~I~v~ 71 (81)
.|.|=|...+-.......+.+.|++.|+++-..+.+.+| .++. .+...|+.++.-++++
T Consensus 166 ~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~-~~l~~i~~~~~d~v~~ 225 (419)
T 3h5l_A 166 KIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWG-PTLAKLRADPPAVIVV 225 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCH-HHHHHHHHSCCSEEEE
T ss_pred EEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHH-HHHHHHHhcCCCEEEE
Confidence 455555443323467778888899999987665555555 4455 4555676554444433
No 44
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=52.42 E-value=17 Score=25.92 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=25.2
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLN 48 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~ 48 (81)
|.|-++..|-...++..|.++|+++|+.+-..+.+.
T Consensus 189 V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~ 224 (555)
T 2e4u_A 189 VSTVASEGDYGETGIEAFEQEARLRNICIATAEKVG 224 (555)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred EEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeC
Confidence 555565555445678889999999999876655443
No 45
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=52.41 E-value=28 Score=25.82 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=38.2
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---.++.....+..|.+.|++.|++|-+|.+ ++.+...+.+|-. +....|+|
T Consensus 544 ap~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~---~~~~g~k~~~a~~~g~p~~iiv 603 (645)
T 1nyr_A 544 APKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIPYQIVV 603 (645)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 34678765433122346788999999999999999963 4455556655543 45544444
No 46
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=52.33 E-value=32 Score=20.75 Aligned_cols=54 Identities=7% Similarity=-0.065 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHhcCCceEE-ecCC-CCCCC---------cc-hHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 24 DNFTSHLYSTLCRQNIQTF-IDDQ-LNRGD---------EI-SESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~-~d~~-~~~G~---------~~-~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
..+++.+.+.|++.|+.+- +|-. ..... .. ...+.+.|.+++.+| +-||.|..+
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii-~gsP~y~~~ 85 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLA-LGSPTRFGN 85 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEE-EEEECBTTB
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEE-EEcChhccC
Confidence 4677778888888886642 2211 10000 00 001256678888554 567777643
No 47
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=51.78 E-value=7.1 Score=23.63 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHhcCCceE
Q 044867 24 DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v 41 (81)
..|+..|+..|+++|++|
T Consensus 8 ~~fi~~Lk~~LK~rGvkV 25 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKV 25 (124)
T ss_dssp HHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCCeee
Confidence 368999999999999876
No 48
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=51.60 E-value=16 Score=26.51 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=37.6
Q ss_pred CcccEEEece-e-cc--CcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFR-G-ED--TRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~-~-~D--~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|--- . ++ .....+..|.+.|++.|++|-+|.+ +..+...+.++-. .....|+|
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~---~~s~g~k~~~a~~~G~p~~iii 376 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDR---DIRAGRKYYEWEMRGVPLRVEI 376 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCC---SSCHHHHHHHHHHEECSEEEEE
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 5678877654 3 21 2346788999999999999999964 2344444444433 45554444
No 49
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=50.72 E-value=68 Score=23.22 Aligned_cols=51 Identities=10% Similarity=0.114 Sum_probs=31.1
Q ss_pred cCcccHHHHHHHHHhcCCceEE--ecCCCCCCCcchHHHHHHHH-hcCeEEEEecCC
Q 044867 21 DTRDNFTSHLYSTLCRQNIQTF--IDDQLNRGDEISESLLNAIQ-ASAISVIVFSEG 74 (81)
Q Consensus 21 D~~~~~~~~L~~~L~~~g~~v~--~d~~~~~G~~~~~~i~~aI~-~S~~~I~v~S~~ 74 (81)
|.....+.+|.+.|++.|++|. +|.+ .++.+...+.++=. .....| |+-++
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr--~~~siGkK~r~Ad~iGiPy~I-iVG~k 414 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLET--MQSSLEQLYSKYDEMSILFTV-LVTET 414 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSS--SCCTTHHHHHHHGGGTCSEEE-EECTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCC--cCCCHHHHHHHHHHcCCCEEE-EECch
Confidence 4345789999999999999998 6642 13444444444433 334444 44433
No 50
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=50.66 E-value=35 Score=21.77 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=27.9
Q ss_pred CcccEEEeceeccCc--ccHHHHHHHHHhcCCceEEec
Q 044867 9 KKYDVFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 9 ~~~dVFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d 44 (81)
+..-||+.|-..|.. ......+.+.|++.|+++-+.
T Consensus 182 ~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~ 219 (246)
T 4f21_A 182 KGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYK 219 (246)
T ss_dssp TTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEE
T ss_pred cCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEE
Confidence 455699999888854 356788999999999887544
No 51
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=49.84 E-value=73 Score=24.16 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=39.2
Q ss_pred CcccEEEeceecc-CcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGED-TRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D-~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---.++ .....+..|...|++.|+++.+|. .+.++...+.+|=. .....|+|
T Consensus 558 AP~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~---~~~sigkk~k~Ad~~G~p~~IiI 618 (693)
T 2zt5_A 558 APFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDD---SSGSIGRRYARTDEIGVAFGVTI 618 (693)
T ss_dssp SSCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECC---CCSCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHHcCCCEEEEE
Confidence 3578887654433 235788999999999999999995 34455656655544 34444443
No 52
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=48.22 E-value=41 Score=19.99 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=31.6
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
+..++.|.+.|++.|+.+-+- ...+.-.+.+...+.+++. |++-||.|.
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~---~~~~~~~~~~~~~~~~~d~-ii~Gspty~ 63 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMV---DLRAVDPQELIEAVSSARG-IVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEE---ETTTCCHHHHHHHHHHCSE-EEEECCBSS
T ss_pred HHHHHHHHHHHHhCCCeEEEE---ECCCCCHHHHHHHHHhCCE-EEEEcCCcC
Confidence 578888999998888764221 1222223456666778885 556688775
No 53
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=47.51 E-value=45 Score=20.51 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=27.3
Q ss_pred CcccEEEeceeccCc--ccHHHHHHHHHhcCCceEEec
Q 044867 9 KKYDVFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 9 ~~~dVFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d 44 (81)
...-||+.|-..|.. ......+.+.|++.|.++-+.
T Consensus 150 ~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~ 187 (210)
T 4h0c_A 150 KQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQV 187 (210)
T ss_dssp TTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEE
Confidence 345699999888854 345678889999999876544
No 54
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=46.49 E-value=49 Score=23.93 Aligned_cols=58 Identities=14% Similarity=0.121 Sum_probs=38.7
Q ss_pred CcccEEEeceec-c-CcccHHHHHHHHHhcCC-ceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGE-D-TRDNFTSHLYSTLCRQN-IQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~-D-~~~~~~~~L~~~L~~~g-~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---.+ + .....+..|...|++.| +++-+|.. .++...+.+|=+ .....|+|
T Consensus 397 aP~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~~iiv 458 (505)
T 1ati_A 397 APIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPFAVTV 458 (505)
T ss_dssp CSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCEEEEE
Confidence 468898775443 1 22467889999999999 99999853 456666665554 34444444
No 55
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=46.49 E-value=34 Score=22.66 Aligned_cols=53 Identities=2% Similarity=-0.004 Sum_probs=33.4
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASA 65 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~ 65 (81)
.|.|-|...+-.......+...|++.|+.+-..+...+| .++. .+...|+.+.
T Consensus 143 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~-~~l~~i~~~~ 196 (374)
T 3n0x_A 143 TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFT-AVGQRLFDAL 196 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCH-HHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHH-HHHHHHHhcC
Confidence 566666444333456788888999999987665545555 3454 4555666554
No 56
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=46.08 E-value=24 Score=20.25 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=32.5
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++.+.-+++|+.+.-|. . .+.|+.|.+++.+++.+
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~~LAr~L~~~~~ig~~IP~ely~aVAe 88 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKFIPETTYEAVGE 88 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCBTSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEECHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence 678899999999999998884 2 56899999999888754
No 57
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=45.34 E-value=25 Score=20.31 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=13.4
Q ss_pred CcchHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 51 DEISESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 51 ~~~~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
-...+.+.+.|++.+++| +|+....-+||
T Consensus 7 ~~~~~~v~~~i~~~~Vvv--fsk~t~~~p~C 35 (118)
T 2wem_A 7 GGSAEQLDALVKKDKVVV--FLKGTPEQPQC 35 (118)
T ss_dssp --CHHHHHHHHHHSSEEE--EESBCSSSBSS
T ss_pred ccHHHHHHHHhccCCEEE--EEecCCCCCcc
Confidence 334556666666665433 44433333444
No 58
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=45.22 E-value=18 Score=22.22 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=24.2
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHH-hcCeEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQ-ASAISV 68 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~-~S~~~I 68 (81)
.-...|...|++.|+.+..-. +.+. +.+.+.|.++++ +++++|
T Consensus 27 sn~~~l~~~l~~~G~~v~~~~-iv~Dd~~i~~al~~a~~~~~DlVi 71 (164)
T 3pzy_A 27 RCGPIITEWLAQQGFSSAQPE-VVADGSPVGEALRKAIDDDVDVIL 71 (164)
T ss_dssp CHHHHHHHHHHHTTCEECCCE-EECSSHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeCCHHHHHHHHHHHHhCCCCEEE
Confidence 345677888899998754322 2111 335555555554 566544
No 59
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=44.60 E-value=17 Score=21.10 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=24.9
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-cCeEEEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-SAISVIV 70 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-S~~~I~v 70 (81)
.+...|.+.+++..-.+++-.-..+.+.+.+.|.++.++ .++-|++
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~~~~i~~aL~~a~~rGV~Vril~ 60 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFTAPDIMKALVAAKKRGVDVKIVI 60 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeCCHHHHHHHHHHHHCCCEEEEEE
Confidence 355677777765544555544423655566666665542 3444443
No 60
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=44.49 E-value=49 Score=23.96 Aligned_cols=59 Identities=12% Similarity=0.277 Sum_probs=38.5
Q ss_pred CcccEEEecee-c-cCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRG-E-DTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~-~-D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---. + +.....+..|...|++.|+++-+|.+ +.++...+..|-. .....|+|
T Consensus 469 ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~~iiv 530 (572)
T 2j3l_A 469 APFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPIRITV 530 (572)
T ss_dssp SSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCEEEEE
Confidence 34788876543 2 22246788999999999999999863 3456666666544 45555444
No 61
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=44.30 E-value=37 Score=25.11 Aligned_cols=51 Identities=8% Similarity=0.039 Sum_probs=31.1
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCC-----CcchHHHHHHHHhcC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRG-----DEISESLLNAIQASA 65 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G-----~~~~~~i~~aI~~S~ 65 (81)
|-|-| ..|.....+..+.++++++|+.+-..+.+..+ .++.. +.+.|+.+.
T Consensus 124 v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~-~l~~i~~~~ 179 (823)
T 3kg2_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRS-LFQDLELKK 179 (823)
T ss_dssp EEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTT-HHHHTTTTT
T ss_pred EEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHH-HHHHHHhcC
Confidence 44445 34444678889999999999887665443333 34443 445566543
No 62
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=44.18 E-value=54 Score=24.46 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=37.8
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---.++ ....+..|.+.|++.|++|-+|.+ ++.+...+.+|=. +....|+|
T Consensus 538 aP~qv~vipi~~~-~~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p~~ivv 596 (642)
T 1qf6_A 538 APVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVC 596 (642)
T ss_dssp CSSCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 4577876543322 346889999999999999999963 3455555555543 44444443
No 63
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=44.07 E-value=20 Score=22.22 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=36.5
Q ss_pred ccEEEeceeccCc--ccHHHHHHHHH---------------hc-CCceEEecCCC-CCCCcchHHHHHHHHhcCeEEEEe
Q 044867 11 YDVFVSFRGEDTR--DNFTSHLYSTL---------------CR-QNIQTFIDDQL-NRGDEISESLLNAIQASAISVIVF 71 (81)
Q Consensus 11 ~dVFISy~~~D~~--~~~~~~L~~~L---------------~~-~g~~v~~d~~~-~~G~~~~~~i~~aI~~S~~~I~v~ 71 (81)
-.||||=...|+. -.|+..+.+.| ++ .|+.+-.-... +.| .++|.+.|.+=.+-+||+
T Consensus 12 g~V~lsv~D~dK~~~v~~ak~~~~ll~Gf~l~AT~gTa~~L~e~~Gl~v~~v~k~~eGG---~p~I~d~I~~geIdlVIn 88 (152)
T 1b93_A 12 KHIALVAHDHCKQMLMSWVERHQPLLEQHVLYATGTTGNLISRATGMNVNAMLSGPMGG---DQQVGALISEGKIDVLIF 88 (152)
T ss_dssp CEEEEEECGGGHHHHHHHHHHTHHHHTTSEEEEETTHHHHHHHHHCCCCEEECCGGGTH---HHHHHHHHHTTCCCEEEE
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHHHhCceeEEEEecCCCC---CchHHHHHHCCCccEEEE
Confidence 3599997677643 13444444432 22 45443222221 123 468999999999999999
Q ss_pred cCC
Q 044867 72 SEG 74 (81)
Q Consensus 72 S~~ 74 (81)
.++
T Consensus 89 t~~ 91 (152)
T 1b93_A 89 FWD 91 (152)
T ss_dssp ECC
T ss_pred cCC
Confidence 887
No 64
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=43.65 E-value=30 Score=19.18 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=32.2
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++.+.-+++|+.+.-|. . .+.|+.|.+++.+++.+
T Consensus 27 ~~A~~I~~~A~e~~VPi~e~~~LAr~L~~~~~ig~~IP~ely~aVAe 73 (83)
T 3bzy_B 27 AKALQIIKLAELYDIPVIEDIPLARSLDKNIHKGQYITEDFFEPVAQ 73 (83)
T ss_dssp HHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCTTCBCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 678899999999999998884 2 57889999888887754
No 65
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=43.15 E-value=70 Score=21.49 Aligned_cols=51 Identities=8% Similarity=0.070 Sum_probs=30.9
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCC-CC-cchHHHHHHHHhcC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNR-GD-EISESLLNAIQASA 65 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~-G~-~~~~~i~~aI~~S~ 65 (81)
|.|-| ..|.....+..+.++|+++|+.+-..+.+.. ++ ++. .+...|+.+.
T Consensus 133 vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~-~~l~~ik~~~ 185 (389)
T 3o21_A 133 FVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIKDVQEFR-RIIEEMDRRQ 185 (389)
T ss_dssp EEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCCTHHHH-HHHHHHHTTT
T ss_pred EEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCCcHHHH-HHHHHHHhCC
Confidence 44445 3444456788888999999987765543322 33 444 4555666554
No 66
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=42.95 E-value=36 Score=22.68 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCe
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~ 66 (81)
..++..+.+.+++.|+.+-..+ +.+|+.=...+...|+.++-
T Consensus 151 ~~~~~~~~~~~~~~g~~v~~~~-~~~~~~d~~~~l~~i~~~~~ 192 (395)
T 3h6g_A 151 LIRLQELIKAPSRYNLRLKIRQ-LPADTKDAKPLLKEMKRGKE 192 (395)
T ss_dssp HHHTHHHHTGGGTSSCEEEEEE-CCSSGGGGHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCCceEEEEE-eCCCchhHHHHHHHHhhcCC
Confidence 3556677777888888776543 66664334456666766543
No 67
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=42.68 E-value=25 Score=22.01 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=25.7
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHHhcCeEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQASAISV 68 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~~S~~~I 68 (81)
.-...|...|++.|+.+..-. +.+. +.+.+.+.+++++++++|
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~DlVi 67 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGF-VVMDDLDEIGWAFRVALEVSDLVV 67 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCEEE
Confidence 345678888999998765432 2111 235556666666666554
No 68
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=42.65 E-value=32 Score=18.92 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 55 ESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
+.+.+.+++.+..|+.|. ++||
T Consensus 21 ~~~~~~~~~~k~vvv~F~-----a~wC 42 (114)
T 2oe3_A 21 TEFRNLIKQNDKLVIDFY-----ATWC 42 (114)
T ss_dssp HHHHHHHHHCSEEEEEEE-----CTTC
T ss_pred HHHHHHHhCCCEEEEEEE-----CCCC
Confidence 456667777777777775 4677
No 69
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=42.22 E-value=42 Score=23.87 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=35.8
Q ss_pred cccEEEeceec-----cCcccHHHHHHHHHhcCCceEEecC-CCCCCCcchHHHHHHH--HhcCeEEEE
Q 044867 10 KYDVFVSFRGE-----DTRDNFTSHLYSTLCRQNIQTFIDD-QLNRGDEISESLLNAI--QASAISVIV 70 (81)
Q Consensus 10 ~~dVFISy~~~-----D~~~~~~~~L~~~L~~~g~~v~~d~-~~~~G~~~~~~i~~aI--~~S~~~I~v 70 (81)
+++|+|---.. +.....+..|...|++.|++|-+|. + +..+...+..|- ......|+|
T Consensus 338 p~qv~Iip~~~~~~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~~---~~~~g~k~~~a~~~~gip~~iii 403 (471)
T 3a32_A 338 PIQFAVIAVKTGGEVDREIEDLASSIAKGLLDKGFRVAVKGSS---KTGLSSDVRHIESTAKPAVNVFI 403 (471)
T ss_dssp SCSEEEEEEECSSTTHHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTTHHHHHHHHHHTTCCSEEEEE
T ss_pred CceEEEEEccCcccccHHHHHHHHHHHHHHHHCCCEEEEecCC---CCCHHHHHHHHHHhcCCCEEEEE
Confidence 46777665441 2224678899999999999999985 3 234444444443 344444443
No 70
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=41.51 E-value=42 Score=19.29 Aligned_cols=13 Identities=8% Similarity=0.268 Sum_probs=5.4
Q ss_pred hcCeEEEEecCCC
Q 044867 63 ASAISVIVFSEGY 75 (81)
Q Consensus 63 ~S~~~I~v~S~~y 75 (81)
+-++.|++++.+.
T Consensus 44 ~~digIIlIte~~ 56 (109)
T 2d00_A 44 RGGYALVAVDEAL 56 (109)
T ss_dssp HCCCSEEEEETTT
T ss_pred CCCeEEEEEeHHH
Confidence 3344444444433
No 71
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=41.13 E-value=95 Score=22.23 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=38.0
Q ss_pred CcccEEEeceec-c---CcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGE-D---TRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~-D---~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---.+ | .....+..|.+.|++.|++|-+|.+ .+..+...+.++-. .....|+|
T Consensus 286 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~--~~~s~g~k~~~a~~~G~p~~iii 350 (477)
T 1hc7_A 286 APIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDR--DQHTPGYKFHEWELKGVPFRVEL 350 (477)
T ss_dssp CSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCC--SSSCHHHHHHHHHHTTCSEEEEE
T ss_pred CCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCC--CCCCHHHHHHHHhhcCCCEEEEE
Confidence 457888765332 2 2246788999999999999999952 13455555544433 44554444
No 72
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=41.06 E-value=67 Score=20.31 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=35.5
Q ss_pred cccEEEeceecc-CcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEE
Q 044867 10 KYDVFVSFRGED-TRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69 (81)
Q Consensus 10 ~~dVFISy~~~D-~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~ 69 (81)
+.=+||-|...+ .....+..+.++|++.|+.+-.-. +.. .-.+.+.+.|++++..++
T Consensus 28 ~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~-i~~--~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 28 KTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELD-IAT--ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp CEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECC-TTT--SCHHHHHHHHHHSSEEEE
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ecC--CChHHHHHHHHhCCEEEE
Confidence 344689887652 223578889999999998754321 222 224556677777776554
No 73
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=40.72 E-value=8.2 Score=23.02 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASA 65 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~ 65 (81)
-+..|..+.+.+|+-+|.|.+. +|+.|...|.+.+..+.
T Consensus 40 ~l~~I~~~~~~r~VIi~TD~D~-~GekIRk~i~~~lp~~~ 78 (119)
T 2fcj_A 40 RLEELADELEGYDVYLLADADE-AGEKLRRQFRRMFPEAE 78 (119)
T ss_dssp HHHHHHHHTTTSEEEEECCSSH-HHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHhcCCCEEEEECCCc-cHHHHHHHHHHHCCCCc
Confidence 4556777777888888888652 57777777777777664
No 74
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=40.48 E-value=61 Score=21.23 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=27.9
Q ss_pred CcccEEEeceeccCc--ccHHHHHHHHHhcCCceEEec
Q 044867 9 KKYDVFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 9 ~~~dVFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d 44 (81)
...-||+.|-..|.. ......+.++|++.|+++-+.
T Consensus 204 ~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~ 241 (285)
T 4fhz_A 204 SKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGH 241 (285)
T ss_dssp CCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEE
Confidence 445699999888854 356788999999999887654
No 75
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=40.41 E-value=25 Score=25.11 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=31.7
Q ss_pred ccCcccHHHHHHHHHhcCCceEEecCC-CC----CCCcchHHHHHHHHhcCeEEE
Q 044867 20 EDTRDNFTSHLYSTLCRQNIQTFIDDQ-LN----RGDEISESLLNAIQASAISVI 69 (81)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~----~G~~~~~~i~~aI~~S~~~I~ 69 (81)
.|.|+.=+-.|.+.|.++|..|..-+- .. .|..+.+.+.+++++++++|+
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv~ 401 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVIIS 401 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEEC
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEEE
Confidence 455566677899999999987654332 22 233345678899999998653
No 76
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=39.81 E-value=66 Score=19.91 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHhcC-CceEEecCCCCCCCcchHHHHHHHHhcCeEEEE
Q 044867 24 DNFTSHLYSTLCRQ-NIQTFIDDQLNRGDEISESLLNAIQASAISVIV 70 (81)
Q Consensus 24 ~~~~~~L~~~L~~~-g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v 70 (81)
..++.+|...|++. |++|.+-++-....++.+....+ .+++++|=|
T Consensus 31 l~ia~~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~a-n~adlfISI 77 (182)
T 3czx_A 31 QDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLI-RGSDVAIEF 77 (182)
T ss_dssp HHHHHHHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHH-HTCSEEEEE
T ss_pred HHHHHHHHHHHhhcCCcEEEEecCCCccCCHHHHHHHh-hCCCEEEEe
Confidence 36778899999999 99998865311122344443333 367766544
No 77
>1q8d_A GDNF family receptor alpha 1; all-alpha, Cys-rich, hormone/growth factor receptor complex; 1.80A {Rattus norvegicus} SCOP: a.228.1.1
Probab=39.24 E-value=5.7 Score=23.51 Aligned_cols=13 Identities=31% Similarity=0.984 Sum_probs=6.4
Q ss_pred EEecCCCCc------CCCC
Q 044867 69 IVFSEGYAS------SIWC 81 (81)
Q Consensus 69 ~v~S~~y~~------S~wC 81 (81)
-+++|||+. |+||
T Consensus 57 t~mTPNYvdn~s~sVspWC 75 (108)
T 1q8d_A 57 TVMTPNYVDSSSLSVAPWC 75 (108)
T ss_dssp STTCCC--------CCCSC
T ss_pred cccCcccccCCCceeeCCc
Confidence 456777775 4676
No 78
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=39.23 E-value=24 Score=22.47 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=36.9
Q ss_pred ccEEEeceeccCc--ccHHHHHHHHH---------------hc-CCceEEecCCC-CCCCcchHHHHHHHHhcCeEEEEe
Q 044867 11 YDVFVSFRGEDTR--DNFTSHLYSTL---------------CR-QNIQTFIDDQL-NRGDEISESLLNAIQASAISVIVF 71 (81)
Q Consensus 11 ~dVFISy~~~D~~--~~~~~~L~~~L---------------~~-~g~~v~~d~~~-~~G~~~~~~i~~aI~~S~~~I~v~ 71 (81)
-.||||=...|+. -.|+..+.+.| ++ .|+.+-.-... +.| .++|.+.|.+=.+-+||+
T Consensus 28 g~V~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT~gTa~~L~e~~Gl~v~~v~k~~eGG---~pqI~d~I~~geIdlVIn 104 (178)
T 1vmd_A 28 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKSGPLGG---DQQIGAMIAEGKIDVLIF 104 (178)
T ss_dssp CEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSCGGGTH---HHHHHHHHHTTSCCEEEE
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhcCCEEEEchHHHHHHHHHhCceeEEEeecCCCC---CchHHHHHHCCCccEEEE
Confidence 4599997777743 13444444332 22 45543222221 113 468999999999999999
Q ss_pred cCC
Q 044867 72 SEG 74 (81)
Q Consensus 72 S~~ 74 (81)
.++
T Consensus 105 t~d 107 (178)
T 1vmd_A 105 FWD 107 (178)
T ss_dssp ECC
T ss_pred ccC
Confidence 887
No 79
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=39.16 E-value=51 Score=25.08 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
..+..|..+|+++|+.|-.- .+..+.+...-+++++..+|+|
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a------~s~~Da~~~i~~~~~i~avIld 58 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYP------NDRDDLLKLIENNARLCGVIFD 58 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECC------SSHHHHHHHHHHCTTEEEEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEe------CCHHHHHHHHHhCCCceEEEEe
Confidence 46889999999999998554 3333333333345667777765
No 80
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=38.87 E-value=20 Score=22.12 Aligned_cols=18 Identities=0% Similarity=-0.164 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHhcCCceE
Q 044867 24 DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v 41 (81)
..+++.+.+.|++.|..+
T Consensus 21 ~~la~~i~~~l~~~g~~v 38 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEV 38 (211)
T ss_dssp HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 467788888888888754
No 81
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=37.70 E-value=33 Score=25.12 Aligned_cols=49 Identities=14% Similarity=0.002 Sum_probs=32.7
Q ss_pred CCCcccEEEeceec---------cCcccHHHHHHHHHhcCCceEEecCC-C-CCCCcchH
Q 044867 7 NNKKYDVFVSFRGE---------DTRDNFTSHLYSTLCRQNIQTFIDDQ-L-NRGDEISE 55 (81)
Q Consensus 7 ~~~~~dVFISy~~~---------D~~~~~~~~L~~~L~~~g~~v~~d~~-~-~~G~~~~~ 55 (81)
.-.+++|.|-=-.. +.....+.+|.+.|++.|++|-+|.+ - .+|..+.+
T Consensus 305 ~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~~ 364 (519)
T 4hvc_A 305 RVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFNH 364 (519)
T ss_dssp TTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHHH
T ss_pred cCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHH
Confidence 34567887643221 22246788999999999999999975 3 46655443
No 82
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=37.28 E-value=47 Score=23.62 Aligned_cols=52 Identities=17% Similarity=0.359 Sum_probs=35.2
Q ss_pred ccCcccHHHHHHHHHhcC-CceEEecCC-CCCCCcchHHHHHHHHhcCeEEEEec
Q 044867 20 EDTRDNFTSHLYSTLCRQ-NIQTFIDDQ-LNRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~-g~~v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
.|.|+.=+-.|.+.|.++ |..|..-+- ... +.....+.++++.++.+|+...
T Consensus 330 dD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~ad~vvi~t~ 383 (431)
T 3ojo_A 330 DDIRESPAFDIYELLNQEPDIEVCAYDPHVEL-DFVEHDMSHAVKDASLVLILSD 383 (431)
T ss_dssp CCCTTCHHHHHHHHHHHSTTCEEEEECSSCCC-TTBCSTTHHHHTTCSEEEECSC
T ss_pred cchhcChHHHHHHHHHhhcCCEEEEECCCccc-ccccCCHHHHHhCCCEEEEecC
Confidence 456666778999999998 988755443 322 2334556788999998666543
No 83
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=37.11 E-value=56 Score=25.83 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=39.1
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEe--------cC---------CCCCCCcchHHHHHHHHhcCeEEEEecCC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI--------DD---------QLNRGDEISESLLNAIQASAISVIVFSEG 74 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~--------d~---------~~~~G~~~~~~i~~aI~~S~~~I~v~S~~ 74 (81)
.||||.+..|+. . +-.+...|.+.|++++- .+ ++..| .++|.+.|++-++.++|-++.
T Consensus 944 ~vlisv~d~~K~-~-~~~~a~~l~~~G~~i~aT~gTa~~l~~~gi~~~~v~~~~~g---~p~i~d~~~~~~~~~~~~~~~ 1018 (1073)
T 1a9x_A 944 RALLSVREGDKE-R-VVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEG---RPHIQDRIKNGEYTYIINTTS 1018 (1073)
T ss_dssp EEEEECCGGGGT-T-HHHHHHHHHHTTCEEEECHHHHHHHHTTTCCCEECBCTTTC---SSBHHHHHHHTCCSEEEECCC
T ss_pred eEEEEecCcCHH-H-HHHHHHHHHHCCCEEEEcCchHHHHHhCCceEEEEeecCCC---CccHHHHHHcCCeEEEEECCC
Confidence 699998887743 3 33676777777776551 11 11123 357889999999999998875
No 84
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=37.05 E-value=70 Score=21.56 Aligned_cols=55 Identities=4% Similarity=0.022 Sum_probs=36.3
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCc-eE-EecCCCCCCCcchHHHHHHHHhcCeEEE
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNI-QT-FIDDQLNRGDEISESLLNAIQASAISVI 69 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~-~v-~~d~~~~~G~~~~~~i~~aI~~S~~~I~ 69 (81)
+||-+.+.|. ........++|++.|+ .+ .++-+ .+.+.-.+.+.+.|++++...+
T Consensus 60 ~~IptAs~~~-~~~~~~~~~~f~~lG~~~v~~L~i~-~r~~a~~~~~~~~l~~ad~I~v 116 (291)
T 3en0_A 60 GIIPSASREP-LLIGERYQTIFSDMGVKELKVLDIR-DRAQGDDSGYRLFVEQCTGIFM 116 (291)
T ss_dssp EEECTTCSSH-HHHHHHHHHHHHHHCCSEEEECCCC-SGGGGGCHHHHHHHHHCSEEEE
T ss_pred EEEeCCCCCh-HHHHHHHHHHHHHcCCCeeEEEEec-CccccCCHHHHHHHhcCCEEEE
Confidence 5888877764 3567778888888888 44 34421 1223445678888998887654
No 85
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=36.61 E-value=84 Score=22.44 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=37.7
Q ss_pred CCcccEEEe-cee-ccCcccHHHHHHHHHhcCCceEE--ecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 8 NKKYDVFVS-FRG-EDTRDNFTSHLYSTLCRQNIQTF--IDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 8 ~~~~dVFIS-y~~-~D~~~~~~~~L~~~L~~~g~~v~--~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
--+++|.|- -.. ++.....+.+|.+.|++.|++|. +|.+ .+.++...+.++-. .....|+|
T Consensus 336 lAP~qV~Ii~~~~~~e~~~~~A~~l~~~Lr~~Gi~v~~~~Ddr--~~~sigkk~r~Ad~~GiP~~IiV 401 (454)
T 1g5h_A 336 LAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSET--VHSSLEQLHSKYDEMSVLFSVLV 401 (454)
T ss_dssp TCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSC--CCSCHHHHHHHHHHTTCSEEEEE
T ss_pred cCCCeEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEecCC--CCCCHHHHHHHHHHcCCCEEEEE
Confidence 345788777 332 13235678999999999999995 6641 14455656555543 34444444
No 86
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=35.77 E-value=42 Score=19.27 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=21.6
Q ss_pred ceeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 17 FRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 17 y~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
|+..| -..+..+...|+..||.+|+-.+
T Consensus 27 ~ra~d--~v~a~~~k~LLe~aGI~~fv~De 54 (97)
T 2hfv_A 27 LRTND--AVLLSAVGALLDGADIGHLVLDQ 54 (97)
T ss_dssp EEECC--HHHHHHHHHHHHHTTCCEECCSC
T ss_pred eecCC--HHHHHHHHHHHHhCCCCEEEcCC
Confidence 46666 35677777888999999998876
No 87
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=35.55 E-value=44 Score=19.10 Aligned_cols=39 Identities=10% Similarity=0.071 Sum_probs=32.5
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++.+.-+++|+.+.-|. . .+.|+.|.+++.+++.+
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 73 (98)
T 3c01_E 27 QRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLR 73 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTCBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeecCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 678899999999999998884 2 56899999999888754
No 88
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=35.49 E-value=33 Score=20.81 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHH--hcCeEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQ--ASAISV 68 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~--~S~~~I 68 (81)
-...|...|++.|+.+-.-. +.+. +.|.+.|.++++ +++++|
T Consensus 22 n~~~l~~~l~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVi 67 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAYE-LVPDEPPMIKKVLRLWADREGLDLIL 67 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEEE-EECSCHHHHHHHHHHHHHTSCCSEEE
T ss_pred hHHHHHHHHHHCCCeEeEEE-EcCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 44578888999998754322 2222 235556666665 455443
No 89
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=35.39 E-value=65 Score=22.30 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=34.0
Q ss_pred ccCcccHHHHHHHHHhcCCceEEecCC-CCCCC-----cchHHHHHHHHhcCeEEE
Q 044867 20 EDTRDNFTSHLYSTLCRQNIQTFIDDQ-LNRGD-----EISESLLNAIQASAISVI 69 (81)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~g~~v~~d~~-~~~G~-----~~~~~i~~aI~~S~~~I~ 69 (81)
.|.|+.=+-.|.+.|.++|..|...+- +.... .+.+.+.+++++++.+|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 455666778999999999988755433 33221 123456788899998876
No 90
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=34.93 E-value=87 Score=21.02 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=21.9
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQ 46 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~ 46 (81)
|.|-++... . +.+|.+.|+++|+.+..+++
T Consensus 32 i~iv~~~~~---~-~~~l~~~L~~~g~~v~~~~~ 61 (278)
T 1z0s_A 32 AAVVYKTDG---H-VKRIEEALKRLEVEVELFNQ 61 (278)
T ss_dssp EEEEESSST---T-HHHHHHHHHHTTCEEEEESS
T ss_pred EEEEeCCcH---H-HHHHHHHHHHCCCEEEEccc
Confidence 555544332 2 88999999999999998753
No 91
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=34.85 E-value=51 Score=21.22 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=21.6
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhcC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQASA 65 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S~ 65 (81)
.....+.++|+++|+.+-....+..|. .+.. ....|...+
T Consensus 150 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~-~~~~l~~~~ 190 (362)
T 3snr_A 150 LWFNDLKKQGEAMGLKIVGEERFARPDTSVAG-QALKLVAAN 190 (362)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTCSCCHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEEEeecCCCCCCHHH-HHHHHHhcC
Confidence 455667777888888754433344443 3443 344444433
No 92
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=34.15 E-value=42 Score=23.92 Aligned_cols=53 Identities=21% Similarity=0.117 Sum_probs=35.7
Q ss_pred ccCcccHHHHHHHHHhcCCceEEecCC-C-------CCCCcchHHHHHHHHhcCeEEEEec
Q 044867 20 EDTRDNFTSHLYSTLCRQNIQTFIDDQ-L-------NRGDEISESLLNAIQASAISVIVFS 72 (81)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~g~~v~~d~~-~-------~~G~~~~~~i~~aI~~S~~~I~v~S 72 (81)
.|.|+.=+-.|.+.|.++|..|..-+- . .++-.+.+.+.++++.++.+|++..
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~ 397 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTE 397 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeC
Confidence 455556677899999999987654332 2 1344455677889999998766543
No 93
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=34.10 E-value=96 Score=20.11 Aligned_cols=53 Identities=11% Similarity=-0.073 Sum_probs=31.3
Q ss_pred cHHHHHHHHHhcCCceEE-ecCC---CCCCC----cchHHHHHHHHhcCeEEEEecCCCCcC
Q 044867 25 NFTSHLYSTLCRQNIQTF-IDDQ---LNRGD----EISESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~-~d~~---~~~G~----~~~~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
.+++.+.+.|++.|+.+- +|=. +..++ .-...+.+.|.+++.+ |+.||.|..+
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~i-I~~sP~Yn~s 112 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQ-VWVSPERHGA 112 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEE-EEEEECSSSS
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEE-EEEeCCCCCC
Confidence 466667777777787543 2211 21111 1135677889999965 5568888655
No 94
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=33.89 E-value=27 Score=19.10 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=10.7
Q ss_pred hHHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 54 SESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 54 ~~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
.+.+.+.|...+ |+|++......+||
T Consensus 7 ~~~~~~~i~~~~--vvvf~~g~~~~~~C 32 (105)
T 2yan_A 7 EERLKVLTNKAS--VMLFMKGNKQEAKC 32 (105)
T ss_dssp HHHHHHHHTSSS--EEEEESBCSSSBCT
T ss_pred HHHHHHHhccCC--EEEEEecCCCCCCC
Confidence 344444444443 33344333233455
No 95
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=33.70 E-value=66 Score=21.07 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=24.1
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCe
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAI 66 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~ 66 (81)
.....+.++|++.|+.+-..+....| .++.. ....|..++.
T Consensus 155 ~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~-~l~~i~~~~~ 196 (375)
T 3i09_A 155 ALEKNTADVVKANGGKVLGEVRHPLSASDFSS-FLLQAQSSKA 196 (375)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTCSCCHH-HHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCEEeeeeeCCCCCccHHH-HHHHHHhCCC
Confidence 46677778888889876544434444 44544 4445555443
No 96
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=33.45 E-value=1.1e+02 Score=20.95 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=36.1
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
..+++|+|-.-.++. ...+..|...|+++ +++-+|.+ +..+...+..|-. .....|+|
T Consensus 326 ~~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~-i~v~~d~~---~~~~~~~~~~a~~~g~p~~iiv 384 (421)
T 1h4v_B 326 EKGPDLYLIPLTEEA-VAEAFYLAEALRPR-LRAEYALA---PRKPAKGLEEALKRGAAFAGFL 384 (421)
T ss_pred CCCCeEEEEECChHH-HHHHHHHHHHHHhc-CEEEEecC---CCCHHHHHHHHHhCCCCEEEEE
Confidence 356789885444332 35678999999999 99988852 3345555555443 34444443
No 97
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=33.15 E-value=19 Score=18.23 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhc
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQAS 64 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S 64 (81)
+..|+..|+.+|+.+---+ ..+.+.|.++.+++
T Consensus 10 V~eLK~~Lk~RGL~~~G~K-----adLieRL~~~~~~~ 42 (51)
T 1h1j_S 10 VVQLKDLLTKRNLSVGGLK-----NELVQRLIKDDEES 42 (51)
T ss_dssp HHHHHHHHHHTTCCCCSSH-----HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCCcH-----HHHHHHHHHHHHhc
Confidence 6789999999998642211 23445555555443
No 98
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=33.00 E-value=97 Score=20.11 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~ 63 (81)
..+..+.+++.++|+.+-..+....++.-...+.+.|+.
T Consensus 144 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~ 182 (389)
T 4gpa_A 144 SILQAIMEKAGQNGWHVSAICVENFNDVSYRQLLEELDR 182 (389)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEEeecCCcchhHHHHHHHhhc
Confidence 445667778888888765544334443323344455544
No 99
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=32.57 E-value=38 Score=20.24 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=15.7
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEE
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~ 42 (81)
++||+++.. ..+-.+.+.++++|.++.
T Consensus 115 i~iS~sG~t---~~~~~~~~~ak~~g~~vi 141 (188)
T 1tk9_A 115 IGISTSGKS---PNVLEALKKAKELNMLCL 141 (188)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCEEE
Confidence 355666554 234466666777786643
No 100
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=32.35 E-value=31 Score=19.12 Aligned_cols=10 Identities=10% Similarity=0.029 Sum_probs=4.5
Q ss_pred HHHHHHHhcC
Q 044867 56 SLLNAIQASA 65 (81)
Q Consensus 56 ~i~~aI~~S~ 65 (81)
.+.+.|...+
T Consensus 7 ~~~~~i~~~~ 16 (109)
T 1wik_A 7 GLKVLTNKAS 16 (109)
T ss_dssp CHHHHHTTSS
T ss_pred HHHHHhccCC
Confidence 3444454444
No 101
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=32.32 E-value=95 Score=19.52 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh-----cCeEEEEecCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA-----SAISVIVFSEG 74 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~-----S~~~I~v~S~~ 74 (81)
=+..|...|+.-|+.|-.-+++ ..+.+.+.|.+..+. .-.+|+|+|+.
T Consensus 70 D~~~L~~~F~~LGF~V~~~~dl-t~~em~~~l~~~~~~dh~~~dc~vvvilSHG 122 (179)
T 3p45_A 70 DRDNLTRRFSDLGFEVKCFNDL-KAEELLLKIHEVSTVSHADADCFVCVFLSHG 122 (179)
T ss_dssp HHHHHHHHHHHTTCEEEEEESC-CHHHHHHHHHHHHTSCCTTBSCEEEEEESCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHhhhhcCCCCEEEEEEeccC
Confidence 3678999999999987766543 233445555543321 33466677753
No 102
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=31.75 E-value=38 Score=20.75 Aligned_cols=42 Identities=7% Similarity=-0.027 Sum_probs=24.1
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHHh--cCeE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQA--SAIS 67 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~~--S~~~ 67 (81)
.-...|...|++.|+.+..-. +.+- +.|.+.|.+++++ ++++
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~a~~~~~~DlV 73 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDKA-IVKENRYAIRAQVSAWIASDDVQVV 73 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHSSSCCEE
T ss_pred ccHHHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCCEE
Confidence 345678888999998764422 2222 2345566666654 5544
No 103
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=31.71 E-value=58 Score=21.56 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=15.6
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCce
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQ 40 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~ 40 (81)
.|.|-|...|-...++..|.++|+++|++
T Consensus 141 ~v~ii~~d~~~G~~~~~~~~~~~~~~g~~ 169 (384)
T 3qek_A 141 HVILIVSDDHEGRAAQKKLETLLEGKESK 169 (384)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHC-----
T ss_pred EEEEEEEcCcccHHHHHHHHHHHHhccCc
Confidence 35555654443456778888889988875
No 104
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.71 E-value=27 Score=21.36 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=24.4
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHH--hcCeEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQ--ASAISV 68 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~--~S~~~I 68 (81)
.-...|...|++.|+.+..-. +.+. +.|.+.|.++++ +++++|
T Consensus 31 sn~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~DlVi 77 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSYE-IVKDDKESIQQAVLAGYHKEDVDVVL 77 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-EECSSHHHHHHHHHHHHTCTTCSEEE
T ss_pred ChHHHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 345577888888898764322 2222 235556666665 555443
No 105
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A*
Probab=31.68 E-value=86 Score=20.05 Aligned_cols=40 Identities=5% Similarity=-0.110 Sum_probs=26.8
Q ss_pred cccEEEeceeccCc----------ccHHHHHHHHHhcCCceEEecCCCCCCC
Q 044867 10 KYDVFVSFRGEDTR----------DNFTSHLYSTLCRQNIQTFIDDQLNRGD 51 (81)
Q Consensus 10 ~~dVFISy~~~D~~----------~~~~~~L~~~L~~~g~~v~~d~~~~~G~ 51 (81)
...+||++-..|.. ..-...+.++|+++|+++-+.. .+|.
T Consensus 196 ~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~--~~g~ 245 (278)
T 2gzs_A 196 TKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWD--FPNL 245 (278)
T ss_dssp TCEEEEEECCC-----------CHHHHHHHHHHHHHHTTCCEEEEE--CTTC
T ss_pred CCcEEEEecCccccccccchhhhhHHHHHHHHHHHHcCCCeeEEEE--cCCC
Confidence 45799999777742 2345688889999999876653 4554
No 106
>1q9u_A Uncharacterized protein APC35924; structural genomics, Zn-binding proteins, PSI, protein structure initiative; HET: CSW CME; 1.80A {Geobacillus stearothermophilus} SCOP: d.129.7.1
Probab=31.62 E-value=40 Score=19.44 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=18.1
Q ss_pred ccHHHHHHHHHhcCCceEEec
Q 044867 24 DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d 44 (81)
+..+..|..+|+++|+.++..
T Consensus 16 ~e~~~~l~~al~~~Gf~v~~~ 36 (130)
T 1q9u_A 16 NETIERLEESLKQEGFGVLWQ 36 (130)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE
Confidence 467889999999999998776
No 107
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=31.55 E-value=25 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=21.1
Q ss_pred cccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 10 KYDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 10 ~~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
.-|.+|+|+... ...+|+..|.+.|++.|
T Consensus 207 ~aD~LiayST~pG~vS~R~~~~GSwFIqaL~~~l~~~~ 244 (310)
T 2nn3_C 207 HADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAG 244 (310)
T ss_dssp STTEEEEECCCCCEEESSSSEEEEHHHHHHHHHHHTTT
T ss_pred CCCEEEEEeCCCCceeecCCCCCCHHHHHHHHHHHhhC
Confidence 347777766443 23689999999999876
No 108
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=31.14 E-value=43 Score=24.00 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=24.2
Q ss_pred CCCcccEEEeceecc--Cc---ccHHHHHHHHHhcCCceEEec
Q 044867 7 NNKKYDVFVSFRGED--TR---DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 7 ~~~~~dVFISy~~~D--~~---~~~~~~L~~~L~~~g~~v~~d 44 (81)
....|| |..-| .+ ..-.+.|.+++.++|++|.+|
T Consensus 74 ~~~GY~----~~~id~~p~~Gt~~dfk~Lv~~aH~~GI~VilD 112 (527)
T 1gcy_A 74 GGEGYF----WHDFNKNGRYGSDAQLRQAASALGGAGVKVLYD 112 (527)
T ss_dssp CCSSTT----CSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCcc----cccCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456677 44444 32 234578899999999999999
No 109
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=30.94 E-value=42 Score=20.30 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=16.0
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEE
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~ 42 (81)
+.||+++.. ..+-.+.+.++++|.++.
T Consensus 114 I~iS~SG~t---~~~i~~~~~ak~~g~~vI 140 (196)
T 2yva_A 114 LAISTRGNS---RDIVKAVEAAVTRDMTIV 140 (196)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCEEE
Confidence 356666654 234456666777787643
No 110
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=30.90 E-value=37 Score=18.31 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=12.7
Q ss_pred hHHHHHHHHhcCeEEEEec
Q 044867 54 SESLLNAIQASAISVIVFS 72 (81)
Q Consensus 54 ~~~i~~aI~~S~~~I~v~S 72 (81)
.+++.+++++.+.+|+.|.
T Consensus 14 ~~~f~~~~~~~k~vlv~f~ 32 (109)
T 3f3q_A 14 ASEFDSAIAQDKLVVVDFY 32 (109)
T ss_dssp HHHHHHHTTSSSCEEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEE
Confidence 4567777777676666664
No 111
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=30.78 E-value=1.4e+02 Score=21.20 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=37.1
Q ss_pred CcccEEEeceecc--CcccHHHHHHHHHhcC--------------CceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 9 KKYDVFVSFRGED--TRDNFTSHLYSTLCRQ--------------NIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 9 ~~~dVFISy~~~D--~~~~~~~~L~~~L~~~--------------g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
.+++|+|---.++ .....+.+|.+.|++. |++|-+|.+ +..+...+.+|-. .....|+|
T Consensus 344 aP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~~~~~~~Gi~v~~D~~---~~~lg~k~r~Ad~~g~p~~ivv 419 (460)
T 3uh0_A 344 NPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEPVPLNDWHFNVDLDIR---NEPVGYRIKSAILKNYSYLIIV 419 (460)
T ss_dssp CSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCCCCTTCCCCCEEECCC---SSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccccccCCCCEEEEEECC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 3567766532222 1246788999999988 999999964 3455556655554 34444443
No 112
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=29.96 E-value=70 Score=21.13 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=31.6
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhcC
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQASA 65 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S~ 65 (81)
.|.|-|...+-.......+.+.|++.|.++-..+...+|+ ++.. +...|+.++
T Consensus 141 ~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~-~l~~i~~~~ 194 (371)
T 4f06_A 141 KVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMPLSTTDFGP-IMQRIKNSG 194 (371)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHH-HHHHHHHHT
T ss_pred EEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecCcccccHHH-HHHHHHhcC
Confidence 3444454333234566778888899999876665566664 4554 445565543
No 113
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=29.89 E-value=91 Score=19.40 Aligned_cols=31 Identities=16% Similarity=0.522 Sum_probs=22.7
Q ss_pred EEEeceeccCc--ccHHHHHHHHHhcCCceEEec
Q 044867 13 VFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 13 VFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d 44 (81)
-||.+-+-|.. .+.+..|.+.|. +|+++..-
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 38888888843 577888999996 47766553
No 114
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=29.89 E-value=1.2e+02 Score=20.26 Aligned_cols=63 Identities=6% Similarity=0.041 Sum_probs=35.9
Q ss_pred ccEEEeceecc-CcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCCc
Q 044867 11 YDVFVSFRGED-TRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYAS 77 (81)
Q Consensus 11 ~dVFISy~~~D-~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~~ 77 (81)
-.+.|-|.+.. .....++.+.+.|.+.|+.+-+- ...+.-.+.+.+.|.+++. |++.||.|..
T Consensus 257 ~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~---~~~~~~~~~~~~~l~~~d~-iiigsP~y~~ 320 (404)
T 2ohh_A 257 ERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVY---CLHEDDRSEIVKDILESGA-IALGAPTIYD 320 (404)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEE---ETTTSCHHHHHHHHHTCSE-EEEECCEETT
T ss_pred CcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEE---ECCCCCHHHHHHHHHHCCE-EEEECccccc
Confidence 34555554432 12467788888888888754221 1122223466677888885 4555676654
No 115
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=29.80 E-value=34 Score=19.42 Aligned_cols=39 Identities=10% Similarity=-0.011 Sum_probs=31.1
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++.+.-+++|+.+.-|. . .+.|+.|.+++.+++.+
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 73 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLR 73 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECHHHHHHHHHHCCSSEECCTTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECHHHHHHHHHcCCCCCccCHHHHHHHHH
Confidence 678899999999999998884 2 56788888887777653
No 116
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=29.57 E-value=76 Score=22.80 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
+.+|...|+++|+++.+-. |.+..+.|.+-+++..+.-|+++..|
T Consensus 67 L~~L~~~L~~~G~~L~v~~----~g~~~~~l~~l~~~~~~~~V~~~~~~ 111 (509)
T 1u3d_A 67 LAQLDSSLRSLGTCLITKR----STDSVASLLDVVKSTGASQIFFNHLY 111 (509)
T ss_dssp HHHHHHHHHHTTCCEEEEE----CSCHHHHHHHHHHHHTCCEEEEECCC
T ss_pred HHHHHHHHHHCCCeEEEEe----CCCHHHHHHHHHHHcCCCEEEEeccc
Confidence 4567778888898876631 22334566666666666666666554
No 117
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=29.39 E-value=87 Score=19.29 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.4
Q ss_pred EEEeceeccCcccHHHHHHHHHhcC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQ 37 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~ 37 (81)
||++|...|..+-+--+|...|++.
T Consensus 91 VlVCFt~~dvPKILPiRlLSeLk~~ 115 (149)
T 2fz0_A 91 VYVCFTLVDIPKILPIRILSGLQEY 115 (149)
T ss_dssp EEEEEEETTSCSSHHHHHHHHHTTS
T ss_pred EEEEEEecCCcccccHHHHhhhccc
Confidence 9999999999887877888888763
No 118
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=29.31 E-value=24 Score=17.77 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCce
Q 044867 27 TSHLYSTLCRQNIQ 40 (81)
Q Consensus 27 ~~~L~~~L~~~g~~ 40 (81)
+..|+..|+.+|+.
T Consensus 15 V~eLK~eLk~RgL~ 28 (50)
T 1zrj_A 15 VNELREELQRRGLD 28 (50)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 67899999999985
No 119
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=29.27 E-value=1.4e+02 Score=21.07 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=42.2
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh--cCeEEEEe
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA--SAISVIVF 71 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~--S~~~I~v~ 71 (81)
..|.|.|-..-....|...+...|...|++|+++. |---++.+.-+++. ++-.|+|-
T Consensus 49 ~~VvVG~D~R~ss~~~~~a~a~gl~~~G~~V~~~~----g~~pTP~~~~av~~~~~~~GImIT 107 (464)
T 1tuo_A 49 GLVVVGHDTRFLADAFARALSGHLAGMGLKVVLLK----GPVPTPLLSFAVRHLKAAGGAMLT 107 (464)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHHHTCEEEEES----SSCCHHHHHHHHHHTTCSEEEEEC
T ss_pred CeEEEeeCCCCCHHHHHHHHHHHHHHCCCeEEEcC----CCCCHHHHHHHHHHhCCCceEEEc
Confidence 35888885555556788889999999999998874 44447788888875 45566654
No 120
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=29.23 E-value=1.1e+02 Score=19.08 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHH-----hcC-eEEEEecCC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQ-----ASA-ISVIVFSEG 74 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~-----~S~-~~I~v~S~~ 74 (81)
.=+..|...|++.|+.|-.-.++. .+.+.+.|.+-.+ .++ .+++++|+.
T Consensus 65 ~Da~~L~~~f~~LgF~V~~~~dlt-~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG 119 (178)
T 2h54_A 65 VDITGMTMLLQNLGYSVDVKKNLT-ASDMTTELEAFAHRPEHKTSDSTFLVFMSHG 119 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCC-HHHHHHHHHHHHTCGGGGGCSCEEEEEESCB
T ss_pred HHHHHHHHHHHHCCCEEEEecCCC-HHHHHHHHHHHHhhhhcCCCCEEEEEEecCC
Confidence 346789999999999876654332 2334444433221 233 355556654
No 121
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=28.99 E-value=42 Score=23.33 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=23.4
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
.|..+|.....-..=+..|...|+++|++|++-
T Consensus 211 ~v~~~~~~gir~~p~~~eLi~~L~~~G~~v~IV 243 (385)
T 4gxt_A 211 RISIKYFVGIRTLDEMVDLYRSLEENGIDCYIV 243 (385)
T ss_dssp CCEEEEEECCEECHHHHHHHHHHHHTTCEEEEE
T ss_pred eeEEeeccCceeCHHHHHHHHHHHHCCCeEEEE
Confidence 345555554432455789999999999999985
No 122
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=28.98 E-value=51 Score=19.58 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=18.4
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++||+++.. ..+-...+.++++|.++..
T Consensus 87 i~iS~sG~t---~~~~~~~~~ak~~g~~vi~ 114 (180)
T 1jeo_A 87 ILISGSGRT---ESVLTVAKKAKNINNNIIA 114 (180)
T ss_dssp EEEESSSCC---HHHHHHHHHHHTTCSCEEE
T ss_pred EEEeCCCCc---HHHHHHHHHHHHCCCcEEE
Confidence 467777764 2345666777888976544
No 123
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=28.89 E-value=33 Score=23.55 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCceEEec
Q 044867 26 FTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d 44 (81)
-.+.|.+++.++||+|.+|
T Consensus 78 df~~lv~~aH~~Gi~VilD 96 (496)
T 4gqr_A 78 EFRNMVTRCNNVGVRIYVD 96 (496)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 3578999999999999998
No 124
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=28.79 E-value=41 Score=20.86 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=23.9
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHHHh--cCeEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAIQA--SAISV 68 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~~--S~~~I 68 (81)
.-...|...|++.|+.+-.-. +.+. +.+.+.|.+++++ ++++|
T Consensus 40 sn~~~L~~~l~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~~DlVi 86 (178)
T 2pjk_A 40 ESGDIIKQLLIENGHKIIGYS-LVPDDKIKILKAFTDALSIDEVDVII 86 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHTCTTCCEEE
T ss_pred hHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 445678888899998754321 2222 2244555555555 55443
No 125
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=28.78 E-value=21 Score=23.41 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=20.7
Q ss_pred cccEEEeceec---------cCcccHHHHHHHHHhcCC
Q 044867 10 KYDVFVSFRGE---------DTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 10 ~~dVFISy~~~---------D~~~~~~~~L~~~L~~~g 38 (81)
.-|.+|.|+.. ....+|+..|.+.|++++
T Consensus 162 ~aD~Li~ysT~pG~vs~r~~~~gS~fiq~L~~~l~~~~ 199 (250)
T 2j32_A 162 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 199 (250)
T ss_dssp TTTEEEEESSCTEECCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCccEEecCCCCCcHHHHHHHHHHHHhC
Confidence 45777776543 334689999999998754
No 126
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=28.77 E-value=49 Score=19.69 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=18.3
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++||+++.- ..+-.+.+.++++|.++..
T Consensus 101 I~iS~sG~t---~~~~~~~~~ak~~g~~vi~ 128 (183)
T 2xhz_A 101 IAISNSGES---SEITALIPVLKRLHVPLIC 128 (183)
T ss_dssp EEECSSSCC---HHHHHHHHHHHTTTCCEEE
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCCEEE
Confidence 466776664 3455677778888976544
No 127
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=28.67 E-value=82 Score=20.26 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhcCC-ceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 24 DNFTSHLYSTLCRQN-IQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g-~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
..+-..|++.|+.-+ +-+.+-+.-..-.-+..+|..|+.+..+-|+++=++|.
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIYPDYD 120 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEETTCC
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEECCcc
Confidence 357778888887554 55566555222235677999999778888888878776
No 128
>3go6_A Ribokinase RBSK; phosphofructokinase, carbohydrate kinase, transferase; HET: RIB ADP; 1.98A {Mycobacterium tuberculosis} PDB: 3go7_A*
Probab=28.55 E-value=1.2e+02 Score=19.71 Aligned_cols=42 Identities=5% Similarity=0.021 Sum_probs=28.2
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISV 68 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I 68 (81)
..+..+.+.++++|..+++|-. +.....+.+...+..++++.
T Consensus 156 ~~~~~~~~~a~~~g~~v~~D~~--~~~~~~~~~~~ll~~~dil~ 197 (310)
T 3go6_A 156 ATALAAARAAQSADAVVMVNAS--PAGQDRSSLQDLAAIADVVI 197 (310)
T ss_dssp HHHHHHHHHHHHTTCEEEEECC--SSSCCHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHcCCEEEEcCC--ccccchHHHHHHHhhCCEEE
Confidence 4566777778889999999954 22224556666677777554
No 129
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.97A {Xylella fastidiosa TEMECULA1} SCOP: c.72.1.0 PDB: 3lki_A*
Probab=28.17 E-value=1.3e+02 Score=19.72 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCceEEecCCC-----CCCCcchHHHHHHHHhcCeEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQL-----NRGDEISESLLNAIQASAISV 68 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~-----~~G~~~~~~i~~aI~~S~~~I 68 (81)
.+.++.+.++++|..+++|-.+ ..++...+.+.+.+..++++.
T Consensus 148 ~~~~~~~~a~~~g~~v~~Dp~~~~~~~~~~~~~~~~~~~ll~~~dil~ 195 (338)
T 3ljs_A 148 VTFEGMRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVK 195 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCGGGSCTTCCTHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHcCCEEEEECCCChhhcCCHHHHHHHHHHHHhhCCEEE
Confidence 4556666677889999998632 124555566666667666543
No 130
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=27.86 E-value=25 Score=19.33 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCceE
Q 044867 27 TSHLYSTLCRQNIQT 41 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v 41 (81)
+..|++.|+++|+.+
T Consensus 31 VaeLK~eLk~RGL~~ 45 (75)
T 2kvu_A 31 VAELKQELKLRSLPV 45 (75)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCC
Confidence 679999999999853
No 131
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.82 E-value=51 Score=20.00 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=18.8
Q ss_pred cccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 10 KYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 10 ~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
+-|| .||+++.. ..+-.+.+.++++|.++..
T Consensus 113 ~~DvvI~iS~SG~t---~~~i~~~~~ak~~g~~vI~ 145 (199)
T 1x92_A 113 PGDVLLAISTSGNS---ANVIQAIQAAHDREMLVVA 145 (199)
T ss_dssp TTCEEEEECSSSCC---HHHHHHHHHHHHTTCEEEE
T ss_pred CCCEEEEEeCCCCC---HHHHHHHHHHHHCCCEEEE
Confidence 3454 56666664 3345666777888876543
No 132
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=27.77 E-value=62 Score=21.31 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=22.3
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcCe
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASAI 66 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~~ 66 (81)
.....+.++|++.|+.+-.......| .++.. ....|..++.
T Consensus 157 ~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~-~l~~i~~~~~ 198 (379)
T 3n0w_A 157 LMNAAIRRELTAGGGQIVGSVRFPFETQDFSS-YLLQAKASGA 198 (379)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEECTTCCCCHH-HHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeCCCCCCCHHH-HHHHHHHCCC
Confidence 45666777777788776544334434 34444 3444544433
No 133
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=27.76 E-value=89 Score=18.05 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEe
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVF 71 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~ 71 (81)
..+..+.+.|++.|+.+-....+..|+ ..+.|.+..++-+.-++|+
T Consensus 78 ~~l~~~~~~~~~~g~~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIV~ 123 (155)
T 3dlo_A 78 ETLSWAVSIIRKEGAEGEEHLLVRGKE-PPDDIVDFADEVDAIAIVI 123 (155)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEESSSC-HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCCC-HHHHHHHHHHHcCCCEEEE
Confidence 345556666777887654332244565 4678888888544444444
No 134
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=27.46 E-value=67 Score=16.53 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=8.1
Q ss_pred HHHHHHH--hcCeEEEEec
Q 044867 56 SLLNAIQ--ASAISVIVFS 72 (81)
Q Consensus 56 ~i~~aI~--~S~~~I~v~S 72 (81)
++.+.+. ..+..++.+.
T Consensus 9 ~~~~~l~~~~~~~~~v~f~ 27 (104)
T 2vim_A 9 DLEKLINENKGRLIVVDFF 27 (104)
T ss_dssp HHHHHHHTTTTSCEEEEEE
T ss_pred HHHHHHHhcCCCeEEEEEE
Confidence 4455555 3444444443
No 135
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=27.39 E-value=63 Score=21.07 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=23.8
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhcCe
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQASAI 66 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S~~ 66 (81)
.....+.++|++.|+.+-....+.+|. .+. .....|..++.
T Consensus 156 ~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~-~~~~~l~~~~~ 197 (364)
T 3lop_A 156 EAITGVERTLKAHALAITAMASYPRNTANVG-PAVDKLLAADV 197 (364)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEECTTSCCCH-HHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCcEEEEEEecCCCccHH-HHHHHHHhCCC
Confidence 456677788888888754333344443 344 44555655543
No 136
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=27.39 E-value=80 Score=20.81 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=22.1
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhcCe
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQASAI 66 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S~~ 66 (81)
.....+.++|++.|+.+-....+..|. .+. .....|..++.
T Consensus 158 ~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~-~~~~~l~~~~~ 199 (392)
T 3lkb_A 158 APVEDARKAARELGLQIVDVQEVGSGNLDNT-ALLKRFEQAGV 199 (392)
T ss_dssp TTHHHHHHHHHHHTCEEEEEEECCTTCCCCH-HHHHHHHHTTC
T ss_pred hHHHHHHHHHHHcCCeEEEEEeeCCCCcCHH-HHHHHHHhcCC
Confidence 455667777777787764433344443 344 33444554443
No 137
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=27.31 E-value=53 Score=19.77 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=13.6
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceE
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v 41 (81)
+||+++.. ..+-.+.+.++++|.++
T Consensus 122 ~iS~SG~t---~~~~~~~~~ak~~g~~v 146 (198)
T 2xbl_A 122 GYSTSGKS---PNILAAFREAKAKGMTC 146 (198)
T ss_dssp EECSSSCC---HHHHHHHHHHHHTTCEE
T ss_pred EEeCCCCC---HHHHHHHHHHHHCCCeE
Confidence 55555553 23445555666677654
No 138
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=27.11 E-value=1.4e+02 Score=20.03 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCC----ceEEecCCCCCCCcchHHHHHHHHh---cCeEEEEecCCCCcC
Q 044867 26 FTSHLYSTLCRQN----IQTFIDDQLNRGDEISESLLNAIQA---SAISVIVFSEGYASS 78 (81)
Q Consensus 26 ~~~~L~~~L~~~g----~~v~~d~~~~~G~~~~~~i~~aI~~---S~~~I~v~S~~y~~S 78 (81)
.+..|...|.++| +.|.+- ++-|.+..++..+.+.+ .+++++-+.|.|..+
T Consensus 63 q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~s 120 (310)
T 2h1v_A 63 QAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTF 120 (310)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTT
T ss_pred HHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhh
Confidence 4566777776553 455444 45555555555555543 456788888888654
No 139
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=27.07 E-value=55 Score=16.99 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=8.9
Q ss_pred HHHHHHhcCeEEEEec
Q 044867 57 LLNAIQASAISVIVFS 72 (81)
Q Consensus 57 i~~aI~~S~~~I~v~S 72 (81)
+.+++.+.+.+|+.+.
T Consensus 14 ~~~~~~~~~~~lv~f~ 29 (109)
T 3tco_A 14 FDEVIRNNKLVLVDCW 29 (109)
T ss_dssp HHHHHHHSSEEEEEEE
T ss_pred HHHHHhcCCeEEEEEE
Confidence 3444555666666554
No 140
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=26.94 E-value=19 Score=24.04 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=20.7
Q ss_pred cccEEEeceec---------cCcccHHHHHHHHHhcCC
Q 044867 10 KYDVFVSFRGE---------DTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 10 ~~dVFISy~~~---------D~~~~~~~~L~~~L~~~g 38 (81)
.-|.+|.|+.. ....+|+..|.+.|++.|
T Consensus 179 ~aD~Li~ysT~pG~vs~r~~~~GS~fiq~L~~~l~~~~ 216 (272)
T 1m72_A 179 HADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAG 216 (272)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeecCCCCCCHHHHHHHHHHHhhC
Confidence 34777776543 333689999999998865
No 141
>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}
Probab=26.86 E-value=55 Score=24.06 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=26.3
Q ss_pred CCCCcccEEEeceeccCc---ccHHHHHHHHHhcCCceEEecC
Q 044867 6 RNNKKYDVFVSFRGEDTR---DNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 6 ~~~~~~dVFISy~~~D~~---~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
+....||+ ..|..-|.+ ..-.+.|.+++.++|++|.+|-
T Consensus 265 ~~~~GYd~-~dy~~idp~~Gt~~df~~LV~~aH~~GI~VIlD~ 306 (645)
T 4aef_A 265 LTYHGYDI-VDYFHVARRLGGDRAFVDLLSELKRFDIKVILDG 306 (645)
T ss_dssp SSTTCSSE-EEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcCc-cCCCccCcccCCHHHHHHHHHHhhhcCCEEEEEe
Confidence 34456777 344444432 2335789999999999999993
No 142
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=26.67 E-value=1.4e+02 Score=21.23 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
+.+|...|++.|+++.+- .|+. .+.|.+-+++..+.-|++...|.
T Consensus 67 L~~L~~~L~~~G~~L~v~----~g~~-~~~l~~l~~~~~~~~V~~~~~~~ 111 (489)
T 1np7_A 67 VQNLAESLQKVGNKLLVT----TGLP-EQVIPQIAKQINAKTIYYHREVT 111 (489)
T ss_dssp HHHHHHHHHHTTCCEEEE----ESCH-HHHHHHHHHHTTEEEEEEECCCS
T ss_pred HHHHHHHHHHCCCcEEEE----ECCH-HHHHHHHHHHcCCCEEEEecccC
Confidence 566777888889887763 2443 45666667777777777766653
No 143
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=26.42 E-value=19 Score=24.05 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=20.2
Q ss_pred ccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 11 YDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 11 ~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
-|.+|+|+... ...+|+..|.+.|++.|
T Consensus 181 aD~Li~yST~pG~vs~R~~~~GS~fIq~L~~~l~~~~ 217 (278)
T 3od5_A 181 ADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYG 217 (278)
T ss_dssp TTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCeEEecCCCCCcHHHHHHHHHHHhhC
Confidence 57777665443 33689999999998754
No 144
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=26.35 E-value=51 Score=19.67 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=17.4
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
++||+++.- .-+-.+.+.++++|.++..
T Consensus 92 i~iS~sG~t---~~~~~~~~~ak~~g~~vi~ 119 (187)
T 3sho_A 92 IGVSVWRYL---RDTVAALAGAAERGVPTMA 119 (187)
T ss_dssp EEECCSSCC---HHHHHHHHHHHHTTCCEEE
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCCEEE
Confidence 466676654 2345666677788876544
No 145
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=26.30 E-value=1e+02 Score=21.59 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
+.+|.+.|++.|+++.+- .|+. .+.|.+-+++..+.-|++..+|.
T Consensus 54 L~~l~~~L~~~g~~l~~~----~g~~-~~~l~~l~~~~~~~~v~~~~~~~ 98 (420)
T 2j07_A 54 VRALREAYRARGGALWVL----EGLP-WEKVPEAARRLKAKAVYALTSHT 98 (420)
T ss_dssp HHHHHHHHHHTTCCEEEE----ESCH-HHHHHHHHHHTTCSEEEEECCCS
T ss_pred HHHHHHHHHHCCCeEEEE----eCCH-HHHHHHHHHHcCCCEEEEecccC
Confidence 556777888889887663 2443 45666666766776677666553
No 146
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=26.26 E-value=60 Score=23.41 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=34.7
Q ss_pred ccCcccHHHHHHHHHhcCCceEEecC-CC--CCCCcchHHHHHHHHhcCeEEEEe
Q 044867 20 EDTRDNFTSHLYSTLCRQNIQTFIDD-QL--NRGDEISESLLNAIQASAISVIVF 71 (81)
Q Consensus 20 ~D~~~~~~~~L~~~L~~~g~~v~~d~-~~--~~G~~~~~~i~~aI~~S~~~I~v~ 71 (81)
.|.|+.=+-.|.+.|.++|..|..-+ .. .++-.+...+.++++.++.+|++.
T Consensus 368 dD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t 422 (478)
T 3g79_A 368 DDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLA 422 (478)
T ss_dssp SCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECS
T ss_pred cchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEec
Confidence 45566667789999999998765543 22 122234456788899999866543
No 147
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=26.17 E-value=54 Score=17.99 Aligned_cols=18 Identities=17% Similarity=0.240 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCeEEEEec
Q 044867 55 ESLLNAIQASAISVIVFS 72 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S 72 (81)
+++.+.+.+.+.+|+.|.
T Consensus 24 ~~f~~~l~~~k~vvv~f~ 41 (121)
T 2j23_A 24 DQFKQVTGGDKVVVIDFW 41 (121)
T ss_dssp HHHHHHHSSSSCEEEEEE
T ss_pred HHHHHHHcCCCEEEEEEE
Confidence 456666666666666555
No 148
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=26.10 E-value=18 Score=23.94 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=21.1
Q ss_pred cccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 10 KYDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 10 ~~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
.-|.+|+|+... ...+|+..|.+.|++.|
T Consensus 169 ~aD~Li~yST~pG~vs~r~~~~GS~fiq~L~~~l~~~~ 206 (259)
T 3sir_A 169 HADFLIAYSTVPGFYSWRNTTRGSWFMQSLCAELAANG 206 (259)
T ss_dssp CTTEEEEEEEECCSCCCSSCCCSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCeEeecCCCCCcHHHHHHHHHHHhcC
Confidence 457887766433 23689999999998765
No 149
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=26.01 E-value=1.1e+02 Score=20.08 Aligned_cols=59 Identities=5% Similarity=-0.087 Sum_probs=30.1
Q ss_pred cEEEeceeccCcccHHHHHHHHHhcC--CceEEecCCCCCCCcchHHHHHHHHhcCeEEEE
Q 044867 12 DVFVSFRGEDTRDNFTSHLYSTLCRQ--NIQTFIDDQLNRGDEISESLLNAIQASAISVIV 70 (81)
Q Consensus 12 dVFISy~~~D~~~~~~~~L~~~L~~~--g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v 70 (81)
.|.+-|...+........+.++|++. |+.+-......+|..=...+...|..++.-+++
T Consensus 144 ~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~ 204 (387)
T 3i45_A 144 RWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLF 204 (387)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEE
T ss_pred eEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEE
Confidence 34444433222234566777788877 777544433444533233455556655443333
No 150
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=25.95 E-value=19 Score=21.09 Aligned_cols=9 Identities=0% Similarity=-0.156 Sum_probs=3.5
Q ss_pred HHHHHHHhc
Q 044867 28 SHLYSTLCR 36 (81)
Q Consensus 28 ~~L~~~L~~ 36 (81)
+.|.+.+++
T Consensus 35 ~~~~~l~~~ 43 (115)
T 3aon_B 35 KTIDEMAKN 43 (115)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 334443333
No 151
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=25.73 E-value=20 Score=23.86 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=22.0
Q ss_pred CcccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 9 KKYDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 9 ~~~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
..-|.+|+|+... ...+|+..|.+.|++++
T Consensus 198 ~~aD~Li~ysT~pG~vs~R~~~~GS~fiq~L~~~l~~~~ 236 (277)
T 1nw9_B 198 TPSDIFVSYSTFPGFVSWRDPKSGSWYVETLDDIFEQWA 236 (277)
T ss_dssp CSCSEEEEEECCCCBSSTTCTTSCBHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCeEEEcCCCCCcHHHHHHHHHHHHhC
Confidence 3468888876543 23589999999998754
No 152
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=25.63 E-value=62 Score=16.51 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.9
Q ss_pred HHHHHhcCeEEEEec
Q 044867 58 LNAIQASAISVIVFS 72 (81)
Q Consensus 58 ~~aI~~S~~~I~v~S 72 (81)
.+.+.+.+..++.+.
T Consensus 10 ~~~~~~~~~~~v~f~ 24 (104)
T 2e0q_A 10 DSFLASHEIAVVDFW 24 (104)
T ss_dssp HHHHHHSSEEEEEEE
T ss_pred HHHHhcCCcEEEEEE
Confidence 344455566666554
No 153
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=25.30 E-value=96 Score=20.12 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=22.3
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhcC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQASA 65 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S~ 65 (81)
.....+.++|+++|+.+-....+..|. .+. ...+.|.+++
T Consensus 166 ~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~-~~~~~l~~~~ 206 (375)
T 4evq_A 166 EMVSGFKKSFTAGKGEVVKDITIAFPDVEFQ-SALAEIASLK 206 (375)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECTTCCCCH-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCCccHH-HHHHHHHhcC
Confidence 456677778888888764433344443 344 4444554433
No 154
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=25.13 E-value=34 Score=19.57 Aligned_cols=24 Identities=13% Similarity=0.457 Sum_probs=12.3
Q ss_pred chHHHHHHHHhcCeEEEEecCCCC
Q 044867 53 ISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 53 ~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
+.+.+.+.+++-++.|++++.+.+
T Consensus 41 ~~~~~~~l~~~~digIIlIte~ia 64 (102)
T 2i4r_A 41 IVKAVEDVLKRDDVGVVIMKQEYL 64 (102)
T ss_dssp HHHHHHHHHHCSSEEEEEEEGGGS
T ss_pred HHHHHHHHhhCCCeEEEEEeHHHH
Confidence 344444444445566666655544
No 155
>3t5x_B 26S proteasome complex subunit DSS1; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} PDB: 1iyj_A 1mje_B 1miu_B
Probab=25.09 E-value=45 Score=18.10 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=15.3
Q ss_pred CcccHHHHHHHHHhcCCce
Q 044867 22 TRDNFTSHLYSTLCRQNIQ 40 (81)
Q Consensus 22 ~~~~~~~~L~~~L~~~g~~ 40 (81)
....|..+|+..|++.|.+
T Consensus 48 v~DDFs~QLr~EL~k~~~k 66 (70)
T 3t5x_B 48 VEDDFSNQLRAELEKHGYK 66 (70)
T ss_dssp CCSHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHhhhc
Confidence 3458999999999988754
No 156
>2jli_A YSCU, YOP proteins translocation protein; cell membrane, transmembrane, protein transport, type III secretion system, plasmid, membrane; 1.13A {Yersinia pestis}
Probab=25.00 E-value=59 Score=19.36 Aligned_cols=39 Identities=5% Similarity=-0.080 Sum_probs=32.1
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++.+.-+++|+.+.-|. . ...|+.|.+++..++.+
T Consensus 71 ~~A~~I~~~A~e~~VPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 117 (123)
T 2jli_A 71 AQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAE 117 (123)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 678899999999999998884 2 56889999888888754
No 157
>3bzs_A ESCU; auto cleavage protein, intein, T3SS, TTSS, asparagine cycliz membrane, membrane protein, protein transport; 1.48A {Escherichia coli} PDB: 3bzr_A 3bzp_A 3bzt_A 3c03_A
Probab=24.70 E-value=59 Score=19.73 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=32.2
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++.+.-+++|+.+.-|. . +..|+.|++++..++.+
T Consensus 81 ~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 127 (137)
T 3bzs_A 81 AKALQIIKLAELYDIPVIEDIPLARSLYKNIHKGQYITEDFFEPVAQ 127 (137)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHSCTTCBCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 678899999999999998884 2 57899999888887754
No 158
>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A
Probab=24.62 E-value=62 Score=20.29 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=18.1
Q ss_pred cHHHHHHHHHhcCCceEEecC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~ 45 (81)
...+.|.+.|++.|+.+..|+
T Consensus 31 ~v~~~l~~~l~~~G~~v~~D~ 51 (354)
T 2wzn_A 31 GIRDIVVDVLKEVADEVKVDK 51 (354)
T ss_dssp THHHHHHHHHHTTSSEEEECT
T ss_pred HHHHHHHHHHHHcCCEEEEeC
Confidence 456789999999999999986
No 159
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=24.59 E-value=1.1e+02 Score=17.93 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=35.2
Q ss_pred cccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcC--eEEEEec
Q 044867 10 KYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASA--ISVIVFS 72 (81)
Q Consensus 10 ~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~--~~I~v~S 72 (81)
+.-|+|.+.........++.+..-++++|++.-+.+ .....+....-.+|-+.|+ +.|-|-+
T Consensus 5 ~PaI~i~~~~~~~~~~~l~~vl~GIEEEGip~~v~~-~~~~~d~~~lA~~AA~~S~lgVGIGi~~ 68 (117)
T 1nbw_B 5 PPGVRLFYDPRGHHAGAINELCWGLEEQGVPCQTIT-YDGGGDAAALGALAARSSPLRVGIGLSA 68 (117)
T ss_dssp CCCEEEEECTTSCCHHHHHHHHHHHHHTTCCEEEEE-CTTCCCHHHHHHHHHHHCTTSEEEEECT
T ss_pred CCEEEEEeCCCCCCHHHHHHHHhhhhhcCCCeEEEE-eCCCCCHHHHHHHHHHhCCCceEEEECC
Confidence 445777773333224678899999999999755532 2222344444455555554 4444433
No 160
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=24.54 E-value=1e+02 Score=19.87 Aligned_cols=40 Identities=3% Similarity=0.065 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC-CcchHHHHHHHHhcC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG-DEISESLLNAIQASA 65 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G-~~~~~~i~~aI~~S~ 65 (81)
.....+.++|++.|+.+-.......| ..+.. ..+.|..++
T Consensus 154 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~-~~~~l~~~~ 194 (368)
T 4eyg_A 154 DALAFFKERFTAGGGEIVEEIKVPLANPDFAP-FLQRMKDAK 194 (368)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSSSCCCHH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHH-HHHHHHhcC
Confidence 44667778888899876544334444 34444 444454433
No 161
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=24.50 E-value=59 Score=19.80 Aligned_cols=46 Identities=11% Similarity=0.012 Sum_probs=28.3
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
...++.+.+.|++.++.+-. . +.+.+.+.+.+.+++.+|+. ||.|.
T Consensus 21 ~~lA~~ia~~l~~~~~~v~~---~---~~~~~~~~~~l~~~D~ii~g-sP~y~ 66 (193)
T 3d7n_A 21 HRMAEAVAEGAEATLHAIDA---E---GNLSEDGWAALDAADAIIFG-TPTYM 66 (193)
T ss_dssp HHHHHHHHHHHTCEEEECCT---T---SCCCHHHHHHHHHCSEEEEE-EEEET
T ss_pred HHHHHHHHHHhhhcceEeee---c---CCCCHhHHHHHHHCCEEEEE-eCccC
Confidence 46777777778776554311 1 22444566778888876655 67664
No 162
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=24.17 E-value=51 Score=22.55 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=34.6
Q ss_pred cEEEeceeccCc--ccHHHHHHHHHhcCCceEEecCC---CCCCCcchHHHHHHH
Q 044867 12 DVFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFIDDQ---LNRGDEISESLLNAI 61 (81)
Q Consensus 12 dVFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~d~~---~~~G~~~~~~i~~aI 61 (81)
-|||-+-+-|.. ..-+.+|.+.|..+|++|..=.. -+.++.+...+..++
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~L 140 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATF 140 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhc
Confidence 589999888854 46788999999999998765331 223345555555555
No 163
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=24.15 E-value=52 Score=18.97 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHhcCCceEEec
Q 044867 24 DNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d 44 (81)
+..+..|..+|+++|+.++-.
T Consensus 13 ~e~~~~l~~al~~~Gf~v~~~ 33 (129)
T 1j3m_A 13 AEARAQVEAALKEEGFGILTE 33 (129)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE
Confidence 356889999999999998876
No 164
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=24.09 E-value=66 Score=16.95 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=8.6
Q ss_pred HHHHHhcCeEEEEec
Q 044867 58 LNAIQASAISVIVFS 72 (81)
Q Consensus 58 ~~aI~~S~~~I~v~S 72 (81)
.+.+.+.+.+++.|.
T Consensus 18 ~~~~~~~~~~lv~f~ 32 (120)
T 1mek_A 18 AEALAAHKYLLVEFY 32 (120)
T ss_dssp HHHHHHCSEEEEEEE
T ss_pred HHHHccCCeEEEEEE
Confidence 344556666666654
No 165
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=23.93 E-value=60 Score=20.38 Aligned_cols=43 Identities=12% Similarity=-0.021 Sum_probs=24.1
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCC--CcchHHHHHHH-HhcCeEE
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRG--DEISESLLNAI-QASAISV 68 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G--~~~~~~i~~aI-~~S~~~I 68 (81)
.-...|...|++.|+.+-.-. +.+. +.+.+.|.+++ ++++++|
T Consensus 49 sn~~~L~~~L~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~DlVI 94 (185)
T 3rfq_A 49 HSGPLVTELLTEAGFVVDGVV-AVEADEVDIRNALNTAVIGGVDLVV 94 (185)
T ss_dssp SHHHHHHHHHHHTTEEEEEEE-EECSCHHHHHHHHHHHHHTTCSEEE
T ss_pred cHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 456678888999998754332 2222 22444555555 3455444
No 166
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=23.93 E-value=1.1e+02 Score=20.27 Aligned_cols=46 Identities=13% Similarity=-0.034 Sum_probs=26.2
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHH--HHhcCeEEEEe
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNA--IQASAISVIVF 71 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~a--I~~S~~~I~v~ 71 (81)
.....+.++|++.|+.+-....+..|. ++. ..... |..++.-++++
T Consensus 157 ~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~-~~~~~~~l~~~~~dav~~ 205 (391)
T 3eaf_A 157 SPIGAIKKAAPSLGLQVVGDYDLPLRATEAD-AERIAREMLAADPDYVWC 205 (391)
T ss_dssp TTHHHHHHHTGGGTEEEEEEEECCTTCCHHH-HHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHcCCceeeeeccCCCCcCHH-HHHHHHHHHHcCCCEEEE
Confidence 456777788888888765444355554 344 33444 55554433333
No 167
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=23.85 E-value=80 Score=19.65 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=16.9
Q ss_pred HHHHHHHHhcCeEEEEecCCCCcC
Q 044867 55 ESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
..+.+.|++++- +++.||.|..|
T Consensus 59 ~~l~~~i~~aD~-~ii~tPeYn~s 81 (190)
T 3u7r_A 59 LRLKDRIEHSDA-VLAITPEYNRS 81 (190)
T ss_dssp HHHHHHHHTSSE-EEEECCCBTTB
T ss_pred HHHHHHHHhCCc-EEEechhhccc
Confidence 456678888885 56678888765
No 168
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=23.83 E-value=91 Score=16.55 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCeEEEEec
Q 044867 55 ESLLNAIQASAISVIVFS 72 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S 72 (81)
++..+++++.+..|+.|.
T Consensus 17 ~~f~~~~~~~k~vlv~f~ 34 (112)
T 1syr_A 17 AEFDSIISQNELVIVDFF 34 (112)
T ss_dssp HHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHccCCeEEEEEE
Confidence 455666666666666554
No 169
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=23.80 E-value=23 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=21.3
Q ss_pred cccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 10 KYDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 10 ~~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
.-|.+|.|+... ...+|+..|.+.|++.|
T Consensus 218 ~aD~LiayST~pG~vs~r~~~~GS~FiqaL~~~l~~~~ 255 (305)
T 1f1j_A 218 EADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 255 (305)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCeeccCCCCCCCHHHHHHHHHHHhhC
Confidence 457777775433 33589999999998866
No 170
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=23.65 E-value=37 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=17.0
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
|.|-| ..|.....+..+.++++++|+.+-..
T Consensus 131 v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~ 161 (384)
T 3saj_A 131 FVYIY-DADRGLSVLQRVLDTAAEKNWQVTAV 161 (384)
T ss_dssp EEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEE-eCchhHHHHHHHHHHhhhcCceEEEE
Confidence 44444 22333456667777777777665443
No 171
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.60 E-value=69 Score=19.10 Aligned_cols=28 Identities=14% Similarity=-0.089 Sum_probs=18.1
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
+.||+++.- .-+-.+.+.++++|.++..
T Consensus 84 I~iS~sG~t---~~~~~~~~~ak~~g~~vi~ 111 (186)
T 1m3s_A 84 IIGSGSGET---KSLIHTAAKAKSLHGIVAA 111 (186)
T ss_dssp EEECSSSCC---HHHHHHHHHHHHTTCEEEE
T ss_pred EEEcCCCCc---HHHHHHHHHHHHCCCEEEE
Confidence 466776664 2345666778888977544
No 172
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=23.56 E-value=47 Score=23.14 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCceEEec
Q 044867 26 FTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d 44 (81)
-.+.|.+++.++|++|.+|
T Consensus 66 dfk~Lv~~aH~~Gi~VilD 84 (448)
T 1g94_A 66 QFIDMVNRCSAAGVDIYVD 84 (448)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 3578899999999999998
No 173
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=23.50 E-value=69 Score=18.06 Aligned_cols=45 Identities=13% Similarity=0.125 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCCC
Q 044867 24 DNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGYA 76 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y~ 76 (81)
.-++.++.+.++++|+.+-++.. ..++ +.+ .+.+.+ |++++|+..
T Consensus 17 S~l~~k~~~~~~~~gi~~~i~a~-~~~~-~~~----~~~~~D--vil~~pqv~ 61 (106)
T 1e2b_A 17 SLLVSKMRAQAEKYEVPVIIEAF-PETL-AGE----KGQNAD--VVLLGPQIA 61 (106)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEE-CSSS-TTH----HHHHCS--EEEECTTSG
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe-cHHH-HHh----hccCCC--EEEEccchh
Confidence 36788999999999998655542 1222 222 235555 666777654
No 174
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=23.49 E-value=56 Score=18.05 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=8.3
Q ss_pred hHHHHHHHHhcCeEEEEe
Q 044867 54 SESLLNAIQASAISVIVF 71 (81)
Q Consensus 54 ~~~i~~aI~~S~~~I~v~ 71 (81)
.+.+..+..+-+.+|+.|
T Consensus 19 ~~~~~~~~~~~k~vlv~f 36 (133)
T 3fk8_A 19 KKALAAGKRTHKPTLLVF 36 (133)
T ss_dssp HHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhcCCcEEEEE
Confidence 334444444455555554
No 175
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=23.46 E-value=88 Score=17.57 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=18.4
Q ss_pred CCcccEEEeceeccCcccHHHHHHHHHhcCCceEE
Q 044867 8 NKKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~ 42 (81)
++++=+|-+|.+.. ......|.+.|++.|.++.
T Consensus 79 ~k~~~~f~t~g~~~--~~a~~~l~~~l~~~G~~~v 111 (138)
T 5nul_A 79 GKKVALFGSYGWGD--GKWMRDFEERMNGYGCVVV 111 (138)
T ss_dssp TCEEEEEEEESSSC--SHHHHHHHHHHHHTTCEEC
T ss_pred CCEEEEEEecCCCC--ChHHHHHHHHHHHCCCEEE
Confidence 44455566664432 2456666666666666544
No 176
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=23.32 E-value=1.5e+02 Score=19.87 Aligned_cols=51 Identities=8% Similarity=0.119 Sum_probs=30.1
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCe
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~ 66 (81)
|.|=|...+-...++..+.+.|+++|+.+-..+.+. .++.. +...|++++.
T Consensus 157 v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~--~d~~~-~l~~i~~~~~ 207 (433)
T 4f11_A 157 VGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFS--NDPCT-SVKKLKGNDV 207 (433)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEES--SCCHH-HHHHHHHTTC
T ss_pred EEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccC--cCHHH-HHHHHhhCCC
Confidence 555555444334677788888888998876654443 24444 4445655443
No 177
>2jlj_A YSCU, YOP proteins translocation protein U; cell membrane, transmembrane, yersinia pesits, protein trans type III secretion system, membrane; 1.3A {Yersinia pestis} PDB: 2jlh_A* 2v5g_A 2w0r_A
Probab=22.97 E-value=66 Score=19.67 Aligned_cols=39 Identities=5% Similarity=-0.080 Sum_probs=32.0
Q ss_pred cHHHHHHHHHhcCCceEEecC-------C-CCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD-------Q-LNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~-------~-~~~G~~~~~~i~~aI~~ 63 (81)
..+.++...-+++|+.+.-|. . ...|+.|++++..++.+
T Consensus 80 ~~A~~I~e~A~e~gVPi~e~~~LAr~Ly~~~~ig~~IP~ely~aVAe 126 (144)
T 2jlj_A 80 AQVQTVRKIAEEEGVPILQRIPLARALYWDALVDHYIPAEQIEATAE 126 (144)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHHHHHHHHCCTTSBCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 678899999999999998884 2 57899999888887754
No 178
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=22.94 E-value=1e+02 Score=20.37 Aligned_cols=32 Identities=6% Similarity=-0.014 Sum_probs=20.5
Q ss_pred EEEeceeccCcccHHHHHHHHHhcCCceEEecC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
|.|-| ..|.....+..+.++|+++|+.+...+
T Consensus 124 vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~ 155 (376)
T 3hsy_A 124 FAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAIN 155 (376)
T ss_dssp EEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEE-eCchhHHHHHHHHHHhhhcCCeEEEEE
Confidence 44445 334345677888888888887765543
No 179
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=22.86 E-value=57 Score=17.32 Aligned_cols=7 Identities=29% Similarity=0.762 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 044867 26 FTSHLYS 32 (81)
Q Consensus 26 ~~~~L~~ 32 (81)
|-..+..
T Consensus 17 ~~~~~~~ 23 (118)
T 2vm1_A 17 FDTHMAN 23 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333333
No 180
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=22.71 E-value=1.3e+02 Score=21.37 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
+.+|.+.|++.|+++.+- .|+ ..+.|.+-+++-.+.-|+....|
T Consensus 94 L~~L~~~L~~~G~~L~v~----~g~-~~~~l~~l~~~~~~~~V~~~~~~ 137 (482)
T 2xry_A 94 LQELEVSLSRKKIPSFFL----RGD-PGEKISRFVKDYNAGTLVTDFSP 137 (482)
T ss_dssp HHHHHHHHHHTTCCEEEE----ESC-HHHHHHHHHHHTTCSEEEEECCC
T ss_pred HHHHHHHHHHcCCcEEEE----eCC-HHHHHHHHHHHcCCCEEEEeccc
Confidence 566777888899887763 243 34566666666666666665554
No 181
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=22.70 E-value=1.1e+02 Score=18.22 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=19.3
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
.||-+--...| +.|+..+.+.-+++|+.+|.-
T Consensus 78 ldvvvivttdd--kewikdfieeakergvevfvv 109 (162)
T 2l82_A 78 LDVVVIVTTDD--KEWIKDFIEEAKERGVEVFVV 109 (162)
T ss_dssp CCEEEEEECCC--HHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEEecCc--HHHHHHHHHHHHhcCcEEEEE
Confidence 45554444444 356777777777777776653
No 182
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=22.55 E-value=72 Score=19.75 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=16.2
Q ss_pred cccE--EEeceeccCcccHHHHHHHHHhcCCceEE
Q 044867 10 KYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTF 42 (81)
Q Consensus 10 ~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~ 42 (81)
+-|| +||+++.- ..+-.+.+.++++|.++.
T Consensus 114 ~~Dvvi~iS~SG~t---~~~~~~~~~ak~~g~~vi 145 (201)
T 3trj_A 114 EDDILLVITTSGDS---ENILSAVEEAHDLEMKVI 145 (201)
T ss_dssp TTCEEEEECSSSCC---HHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEeCCCCC---HHHHHHHHHHHHCCCcEE
Confidence 3455 45555553 234455566667776543
No 183
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=22.52 E-value=76 Score=19.42 Aligned_cols=30 Identities=3% Similarity=-0.069 Sum_probs=20.2
Q ss_pred cHHHHHHHHHhcCCceEEecCC---CCCCCcch
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQ---LNRGDEIS 54 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~---~~~G~~~~ 54 (81)
.....+.+..++++..+.+-.+ +.+|+.+.
T Consensus 60 ~~l~~I~~ea~~~~~~v~i~HR~G~l~~Ge~~v 92 (148)
T 3rpf_A 60 TWFEKWHHKAKDLGVVLKMAHSLGDVLIGQSSF 92 (148)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEEETTCEEE
T ss_pred HHHHHHHHHHhhcCCEEEEEEEEcccCCCCEEE
Confidence 3455666666777877666554 88998753
No 184
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=22.40 E-value=1.3e+02 Score=17.94 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh----cC-eEEEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA----SA-ISVIVFSE 73 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~----S~-~~I~v~S~ 73 (81)
=+..|...|++-|+.|-.-.++ ..+.+.+.|.+.-++ .+ .+++++|+
T Consensus 42 D~~~L~~~f~~LgF~V~~~~dl-t~~em~~~l~~~~~~dh~~~dc~vv~ilSH 93 (146)
T 2dko_A 42 DAANLRETFRNLKYEVRNKNDL-TREEIVELMRDVSKEDHSKRSSFVCVLLSH 93 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEESC-CHHHHHHHHHHHHHSCCTTEEEEEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEeeCC-CHHHHHHHHHHHHHhhcCCCCeEEEEeccC
Confidence 3678999999999987665543 223344444433322 12 35666665
No 185
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=22.39 E-value=51 Score=23.15 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=24.9
Q ss_pred CCcccEEEeceeccCc---ccHHHHHHHHHhcCCceEEecC
Q 044867 8 NKKYDVFVSFRGEDTR---DNFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 8 ~~~~dVFISy~~~D~~---~~~~~~L~~~L~~~g~~v~~d~ 45 (81)
...||| ..|..-|.+ ..=.+.|.+++.++|++|.+|-
T Consensus 61 ~~GYd~-~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~VilD~ 100 (549)
T 4aie_A 61 DNGYDI-SDYEAIDPQYGTMADMDELISKAKEHHIKIVMDL 100 (549)
T ss_dssp TTTSSC-SEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcCc-cCCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456666 334444432 1235788999999999999983
No 186
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=22.21 E-value=52 Score=23.12 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
-.+.|.+++.++|++|.+|-
T Consensus 84 df~~Lv~~aH~~Gi~VilD~ 103 (485)
T 1wpc_A 84 QLQAAVTSLKNNGIQVYGDV 103 (485)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 35788999999999999983
No 187
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=22.07 E-value=1e+02 Score=19.89 Aligned_cols=42 Identities=10% Similarity=0.233 Sum_probs=21.6
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCe
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAI 66 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~ 66 (81)
.....+.++|++.|+.+-....+.+|..=.....+.|..++.
T Consensus 153 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 194 (356)
T 3ipc_A 153 GLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGV 194 (356)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCC
Confidence 455666777778887653322244443323344455554443
No 188
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=22.00 E-value=59 Score=22.45 Aligned_cols=20 Identities=10% Similarity=0.124 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
-...|.+++.++|++|.+|-
T Consensus 76 d~~~lv~~~h~~Gi~VilD~ 95 (422)
T 1ua7_A 76 EFKEMCAAAEEYGIKVIVDA 95 (422)
T ss_dssp HHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999983
No 189
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=22.00 E-value=65 Score=18.39 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=14.6
Q ss_pred HHHHHHhcCCceEEecCC-CCCCCcchHHHHHHHH
Q 044867 29 HLYSTLCRQNIQTFIDDQ-LNRGDEISESLLNAIQ 62 (81)
Q Consensus 29 ~L~~~L~~~g~~v~~d~~-~~~G~~~~~~i~~aI~ 62 (81)
.+...++.+.+.+|.-.. -.|+-.+-....+-++
T Consensus 8 ~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~ 42 (121)
T 3gx8_A 8 AIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLG 42 (121)
T ss_dssp HHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHH
T ss_pred HHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHH
Confidence 344444455555554332 2334444444444333
No 190
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=21.98 E-value=1.7e+02 Score=20.98 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=26.1
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhc
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQAS 64 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S 64 (81)
...+.|.+.|.+.|++..+ ..||.... .+.+++.+.
T Consensus 9 ~~a~~lv~~L~~~GV~~vF---g~PG~~~~-~l~dal~~~ 44 (556)
T 3hww_A 9 RWAAVILEALTRHGVRHIC---IAPGSRST-LLTLAAAEN 44 (556)
T ss_dssp HHHHHHHHHHHTTTCCEEE---ECCCTTSH-HHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCEEE---EcCCCCcH-HHHHHHhhC
Confidence 4677889999999997555 35888765 566677553
No 191
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=21.97 E-value=64 Score=19.56 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=20.5
Q ss_pred HHHHHHHH----HhcCCceEEecCCCCCC--CcchHHHHHHHH-hcCeEE
Q 044867 26 FTSHLYST----LCRQNIQTFIDDQLNRG--DEISESLLNAIQ-ASAISV 68 (81)
Q Consensus 26 ~~~~L~~~----L~~~g~~v~~d~~~~~G--~~~~~~i~~aI~-~S~~~I 68 (81)
-...|... |++.|+.+..-. +.+. +.|.+.+.++++ +++++|
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~~-iv~Dd~~~I~~~l~~a~~~~~DlVi 74 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISEV-VVPEGYDTVVEAIATALKQGARFII 74 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEEE-EECSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhHHhHHHHCCCEEeEEE-EeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 34567777 888888764321 2222 235556666665 366543
No 192
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=21.96 E-value=83 Score=17.12 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=6.4
Q ss_pred chHHHHHHHHhcC
Q 044867 53 ISESLLNAIQASA 65 (81)
Q Consensus 53 ~~~~i~~aI~~S~ 65 (81)
..+.+.+.|+..+
T Consensus 8 ~~~~~~~~i~~~~ 20 (113)
T 3rhb_A 8 MEESIRKTVTENT 20 (113)
T ss_dssp HHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcCC
Confidence 3444555555555
No 193
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=21.90 E-value=46 Score=19.98 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcch
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEIS 54 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~ 54 (81)
+.+++...|.++|+++-.-. +..||.+.
T Consensus 14 ~~s~~~~~L~~~gv~~~~~~-L~vGDyi~ 41 (143)
T 1j23_A 14 LRSEVVKRLKLLGVKLEVKT-LDVGDYII 41 (143)
T ss_dssp TTSHHHHHHHHTTCEEEEEC-CSSCSEEC
T ss_pred cchHhHHHHHHCCCeEEEEE-CCCCCEEe
Confidence 34467788888898765543 77777643
No 194
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.88 E-value=35 Score=21.63 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCceEEecCC-CCCCC--cchHHHHHHHH--hcCeE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQ-LNRGD--EISESLLNAIQ--ASAIS 67 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~-~~~G~--~~~~~i~~aI~--~S~~~ 67 (81)
-...|...|++.|+.+|.... +.+.+ .|.+.|.+++. +++++
T Consensus 24 n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlV 70 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLV 70 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEE
Confidence 345677778888876432212 33332 34455555555 34444
No 195
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=21.83 E-value=53 Score=23.02 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
-.+.|.+++.++|++|.+|-
T Consensus 82 df~~lv~~aH~~Gi~VilD~ 101 (480)
T 1ud2_A 82 QLERAIGSLKSNDINVYGDV 101 (480)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 35788999999999999993
No 196
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=21.79 E-value=27 Score=23.74 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=20.2
Q ss_pred cccEEEeceec---------cCcccHHHHHHHHHhcCC
Q 044867 10 KYDVFVSFRGE---------DTRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 10 ~~dVFISy~~~---------D~~~~~~~~L~~~L~~~g 38 (81)
.-|.+|+|+.. ....+|+..|.+.|++++
T Consensus 222 ~aDfLi~yST~pG~vS~R~~~~GSwFIqaL~~~l~~~~ 259 (302)
T 3e4c_A 222 EKDFIAFCSSTPDNVSWRHPTMGSVFIGRLIEHMQEYA 259 (302)
T ss_dssp SCSEEEEEECCCCCCCSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCceeecCCCCCcHHHHHHHHHHHHhC
Confidence 45777766543 333689999999998754
No 197
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=21.75 E-value=95 Score=15.96 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=8.8
Q ss_pred HHHHHHHH--hcCeEEEEec
Q 044867 55 ESLLNAIQ--ASAISVIVFS 72 (81)
Q Consensus 55 ~~i~~aI~--~S~~~I~v~S 72 (81)
+++.+.++ +.+..++.|.
T Consensus 9 ~~~~~~l~~~~~~~~~v~f~ 28 (105)
T 3m9j_A 9 TAFQEALDAAGDKLVVVDFS 28 (105)
T ss_dssp HHHHHHHHHTTTSCEEEEEE
T ss_pred HHHHHHHHhcCCCeEEEEEE
Confidence 34455555 3444555444
No 198
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=21.75 E-value=1.5e+02 Score=18.21 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHhcC-CceEEecCCCCCCCcchHHHHHHHH-hcCeEEEE
Q 044867 24 DNFTSHLYSTLCRQ-NIQTFIDDQLNRGDEISESLLNAIQ-ASAISVIV 70 (81)
Q Consensus 24 ~~~~~~L~~~L~~~-g~~v~~d~~~~~G~~~~~~i~~aI~-~S~~~I~v 70 (81)
..++.+|...|++. |++|.+-++-...-++.+....+=+ +++++|-|
T Consensus 31 l~ia~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSi 79 (179)
T 1jwq_A 31 LAMALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSI 79 (179)
T ss_dssp HHHHHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEE
Confidence 36788999999999 9999886531111123333332222 46666554
No 199
>3abq_B Ethanolamine ammonia-lyase light chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_B* 3abr_B* 3abs_B* 3any_B* 3ao0_B*
Probab=21.74 E-value=71 Score=22.09 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHhcCCce----EEecCC-CCCCCcchHHHHHHHHhcCeEEEEecC
Q 044867 24 DNFTSHLYSTLCRQNIQ----TFIDDQ-LNRGDEISESLLNAIQASAISVIVFSE 73 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~----v~~d~~-~~~G~~~~~~i~~aI~~S~~~I~v~S~ 73 (81)
..|+..|.+.|+..|++ ++...- +..|+ +|-+.+. ++++|+++-+
T Consensus 190 ~~~l~aL~~~L~~~g~~vap~v~v~qgRValgD----eIge~L~-A~~vvvLIGE 239 (306)
T 3abq_B 190 EEILPPLMAGLKQAGLKVGTPFFVRYGRVKIED----QIGEILG-AKVVILLVGE 239 (306)
T ss_dssp HHHHHHHHHHHHTTTCCBCCCEEEETCCTTHHH----HHHHHHT-CSEEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcCCeEEEeeCeehHHH----HHHHHHC-CCEEEEEEeC
Confidence 46888888999887764 344433 55554 4544444 8888888754
No 200
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=21.70 E-value=1.4e+02 Score=17.73 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=16.2
Q ss_pred ccHHHHHHHHHhcCCceE
Q 044867 24 DNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 24 ~~~~~~L~~~L~~~g~~v 41 (81)
..|+..|....+..|+.+
T Consensus 30 ~~f~~~l~~~~~~~Gm~i 47 (150)
T 4g0m_A 30 NDFVDNLIDRCWRLGMQM 47 (150)
T ss_dssp TTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 579999999999999875
No 201
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=21.67 E-value=1.5e+02 Score=18.43 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=35.2
Q ss_pred CcccEEEeceeccCcccHHHHHHHHHhcCCceEEecCCCCCCCcch--HHHHHHHHhc
Q 044867 9 KKYDVFVSFRGEDTRDNFTSHLYSTLCRQNIQTFIDDQLNRGDEIS--ESLLNAIQAS 64 (81)
Q Consensus 9 ~~~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~--~~i~~aI~~S 64 (81)
..+|.-++|-|.|..-+++--+..-++.+-+.+-+. +.+. +++.+.|++.
T Consensus 77 ~~~d~~~~FvHNDAgvsY~~T~~~i~~~~~~aiVFg------~~~~~l~el~~~i~~~ 128 (157)
T 1kjn_A 77 GDYEFLAGFVPNDAAAAYLVTFAGILNTETLAIIFD------RDADVLEELVNEIMET 128 (157)
T ss_dssp TSCSEEEEEESSHHHHHHHHHHHHHHCSEEEEEEEC------SCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEecchhHHHHHHHHHhcCCCeEEEEec------CCcchHHHHHHHhccC
Confidence 578999999999976556666666666666766664 3333 6777888755
No 202
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=21.57 E-value=1.5e+02 Score=18.12 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh----cC-eEEEEecCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA----SA-ISVIVFSEG 74 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~----S~-~~I~v~S~~ 74 (81)
=+..|...|+.-|+.|-.-.++. .+.+.+.|.+.-++ .+ .+|+|+|..
T Consensus 56 D~~~L~~~f~~LgF~V~~~~dlt-~~em~~~l~~~~~~dh~~~dc~vv~ilSHG 108 (164)
T 1qtn_A 56 DAGALTTTFEELHFEIKPHDDCT-VEQIYEILKIYQLMDHSNMDCFICCILSHG 108 (164)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCC-HHHHHHHHHHHHHSCCTTCSCEEEEEESCE
T ss_pred HHHHHHHHHHHCCCEEEEecCCC-HHHHHHHHHHHHHhhccCCCEEEEEeCCCC
Confidence 36788888999999876654332 23344444433221 33 356677653
No 203
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=21.51 E-value=27 Score=23.36 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=20.4
Q ss_pred cccEEEeceecc---------CcccHHHHHHHHHhcCC
Q 044867 10 KYDVFVSFRGED---------TRDNFTSHLYSTLCRQN 38 (81)
Q Consensus 10 ~~dVFISy~~~D---------~~~~~~~~L~~~L~~~g 38 (81)
.-|.+|.|+... ...+|+..|.+.|++.+
T Consensus 190 ~aD~Li~yST~pG~vs~r~~~~GS~fIq~L~~~l~~~~ 227 (277)
T 4ehd_A 190 EADFLYACSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 227 (277)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCeEeecCCCCCcHHHHHHHHHHHHHC
Confidence 456777665433 33689999999998754
No 204
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=21.42 E-value=55 Score=22.97 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
-.+.|.+++.++|++|.+|-
T Consensus 80 df~~lv~~aH~~Gi~VilD~ 99 (483)
T 3bh4_A 80 ELQDAIGSLHSRNVQVYGDV 99 (483)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 35788999999999999983
No 205
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=21.18 E-value=57 Score=22.43 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
-.++|.+++.++|++|.+|-
T Consensus 70 d~~~lv~~~h~~Gi~VilD~ 89 (405)
T 1ht6_A 70 ELKSLIGALHGKGVQAIADI 89 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 45789999999999999983
No 206
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=21.14 E-value=57 Score=22.75 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=17.6
Q ss_pred cHHHHHHHHHhcCCceEEecC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~ 45 (81)
.-.+.|.+++.++|++|.+|-
T Consensus 87 ~df~~lv~~~H~~Gi~VilD~ 107 (435)
T 1mxg_A 87 EELVRLIQTAHAYGIKVIADV 107 (435)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 345789999999999999983
No 207
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=21.10 E-value=58 Score=22.15 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCCceEEec
Q 044867 26 FTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d 44 (81)
-+..|...|+++|+.||+-
T Consensus 147 ~~~~l~~~l~~~G~~v~iv 165 (327)
T 4as2_A 147 GQRELYNKLMENGIEVYVI 165 (327)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEE
Confidence 4678999999999999985
No 208
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=21.04 E-value=1.6e+02 Score=18.36 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=23.6
Q ss_pred EEEeceeccCc--ccHHHHHHHHHhcCCceEEe
Q 044867 13 VFVSFRGEDTR--DNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 13 VFISy~~~D~~--~~~~~~L~~~L~~~g~~v~~ 43 (81)
.||.+.+.|.. .+.+..|.+.|..+|+.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 57777777642 47888999999999987644
No 209
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=20.97 E-value=98 Score=15.81 Aligned_cols=30 Identities=13% Similarity=0.309 Sum_probs=23.1
Q ss_pred ccEEEeceeccCcccHHHHHHHHHhcCCceE
Q 044867 11 YDVFVSFRGEDTRDNFTSHLYSTLCRQNIQT 41 (81)
Q Consensus 11 ~dVFISy~~~D~~~~~~~~L~~~L~~~g~~v 41 (81)
|.+.|.-...|. ...+.++...|.+.|+++
T Consensus 4 ~~~~l~v~~~Dr-~G~L~~I~~~la~~~inI 33 (88)
T 2ko1_A 4 FLAGIRIVGEDK-NGMTNQITGVISKFDTNI 33 (88)
T ss_dssp EEEEEEEEEECC-TTHHHHHHHHHTTSSSCE
T ss_pred EEEEEEEEEECC-CcHHHHHHHHHHHCCCCe
Confidence 566677777775 378899999999988764
No 210
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.95 E-value=58 Score=19.98 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=20.1
Q ss_pred cccE--EEeceeccCcccHHHHHHHHHhcCCceEEe
Q 044867 10 KYDV--FVSFRGEDTRDNFTSHLYSTLCRQNIQTFI 43 (81)
Q Consensus 10 ~~dV--FISy~~~D~~~~~~~~L~~~L~~~g~~v~~ 43 (81)
+-|| .||+++.. ..+-.+.+.++++|.++..
T Consensus 89 ~~DvvI~iS~SG~t---~~~i~~~~~ak~~g~~vI~ 121 (200)
T 1vim_A 89 DQDVLVGISGSGET---TSVVNISKKAKDIGSKLVA 121 (200)
T ss_dssp TTCEEEEECSSSCC---HHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEEeCCCCc---HHHHHHHHHHHHCCCeEEE
Confidence 4454 66777664 3455677778888877544
No 211
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=20.82 E-value=1.7e+02 Score=21.19 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEEEecCCC
Q 044867 27 TSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVIVFSEGY 75 (81)
Q Consensus 27 ~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~v~S~~y 75 (81)
+.+|...|++.|+++.+- .|+ ..+.|.+-+++..+.-|++..+|
T Consensus 91 L~~L~~~L~~~G~~L~v~----~g~-~~~~l~~l~~~~~~~~v~~~~~~ 134 (543)
T 2wq7_A 91 LEDLDNQLRKLNSRLFVV----RGK-PAEVFPRIFKSWRVEMLTFETDI 134 (543)
T ss_dssp HHHHHHHHHHTTCCCEEE----ESC-HHHHHHHHHHHTTEEEEEEECCC
T ss_pred HHHHHHHHHHCCCeEEEE----eCC-HHHHHHHHHHHcCCCEEEEecCc
Confidence 556777888888876663 243 34566666677777666666554
No 212
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=20.73 E-value=98 Score=19.05 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCeEEEEecCCCCcC
Q 044867 55 ESLLNAIQASAISVIVFSEGYASS 78 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S~~y~~S 78 (81)
..+.+.|.+++. |++.||.|..+
T Consensus 64 ~~l~~~i~~AD~-iv~~sP~y~~~ 86 (193)
T 3svl_A 64 EALAEQIRQADG-VVIVTPEYNYS 86 (193)
T ss_dssp HHHHHHHHHSSE-EEEEECCBTTB
T ss_pred HHHHHHHHHCCE-EEEEecccCCC
Confidence 457788888995 55668888655
No 213
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=20.73 E-value=1e+02 Score=16.60 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=8.5
Q ss_pred HHHHHHHH--hcCeEEEEec
Q 044867 55 ESLLNAIQ--ASAISVIVFS 72 (81)
Q Consensus 55 ~~i~~aI~--~S~~~I~v~S 72 (81)
+++.+.|. +.+.+|+.|.
T Consensus 20 ~~f~~~l~~~~~k~vlv~F~ 39 (116)
T 3qfa_C 20 TAFQEALDAAGDKLVVVDFS 39 (116)
T ss_dssp HHHHHHHHHHTTSCEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEEE
Confidence 44455555 3444444443
No 214
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=20.61 E-value=1.6e+02 Score=18.25 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh----cC-eEEEEecCC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA----SA-ISVIVFSEG 74 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~----S~-~~I~v~S~~ 74 (81)
=+..|...|+.-|+.|-.-.++ ..+.+.+.|.+.-++ ++ .+|+|+|+.
T Consensus 70 D~~~L~~~F~~LgF~V~v~~dl-t~~em~~~l~~~s~~dh~~~dc~vvvilSHG 122 (173)
T 2ql9_A 70 DAEALFKCFRSLGFDVIVYNDC-SCAKMQDLLKKASEEDHTNAACFACILLSHG 122 (173)
T ss_dssp HHHHHHHHHHHHTEEEEEEESC-CHHHHHHHHHHHHTSCCTTEEEEEEEEESCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHHhhccCCCeEEEeecCCC
Confidence 3678888899999987665543 233344444443322 22 356777653
No 215
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=20.61 E-value=1.2e+02 Score=19.13 Aligned_cols=45 Identities=22% Similarity=0.173 Sum_probs=22.2
Q ss_pred HHHHHHhcCCceEEecC--CCCCCCcchHHHHHHHHhcCeE-EEEecC
Q 044867 29 HLYSTLCRQNIQTFIDD--QLNRGDEISESLLNAIQASAIS-VIVFSE 73 (81)
Q Consensus 29 ~L~~~L~~~g~~v~~d~--~~~~G~~~~~~i~~aI~~S~~~-I~v~S~ 73 (81)
.|.+.|+++|+.|-.-. +..+-+...+.+.+.+..-.+- |++.|+
T Consensus 147 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 194 (254)
T 4es6_A 147 FLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSG 194 (254)
T ss_dssp HHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSH
T ss_pred HHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCH
Confidence 56778888887653221 1112222234555666654443 334443
No 216
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=20.55 E-value=86 Score=16.12 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=7.8
Q ss_pred HHHHhcCeEEEEec
Q 044867 59 NAIQASAISVIVFS 72 (81)
Q Consensus 59 ~aI~~S~~~I~v~S 72 (81)
+.++..+..++.+.
T Consensus 13 ~~~~~~~~~lv~f~ 26 (109)
T 2yzu_A 13 ETLGQHPLVLVDFW 26 (109)
T ss_dssp HHHHHCSEEEEEEE
T ss_pred HHhcCCCeEEEEEE
Confidence 34555666666554
No 217
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=20.46 E-value=1.9e+02 Score=19.00 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh----cCe-EEEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA----SAI-SVIVFSE 73 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~----S~~-~I~v~S~ 73 (81)
=+..|...|++-|+.|-.-+++. .+.+.+.|.+.-+. ++. +++++|.
T Consensus 50 D~~~L~~~f~~LGF~V~~~~dlt-~~em~~~l~~~~~~~h~~~d~~v~~ilSH 101 (271)
T 3h11_B 50 DAGALTTTFEELHFEIKPHDDCT-VEQIYEILKIYQLMDHSNMDCFICCILSH 101 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCC-HHHHHHHHHHHHHSCCTTCSCEEEEEESC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHHhcCCCCCEEEEEEEcC
Confidence 36789999999999877665432 23334444333221 334 4555554
No 218
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=20.42 E-value=1e+02 Score=16.49 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCeEEEEecCCCCcCCCC
Q 044867 55 ESLLNAIQASAISVIVFSEGYASSIWC 81 (81)
Q Consensus 55 ~~i~~aI~~S~~~I~v~S~~y~~S~wC 81 (81)
+++.+.+...+..|+.|. ++||
T Consensus 20 ~~~~~~~~~~~~~~v~f~-----a~wC 41 (118)
T 1zma_A 20 VRAQEALDKKETATFFIG-----RKTC 41 (118)
T ss_dssp HHHHHHHHTTCCEEEEEE-----CTTC
T ss_pred HHHHHHHhCCCeEEEEEE-----CCCC
Confidence 455566666565555553 4566
No 219
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=20.42 E-value=1.1e+02 Score=19.87 Aligned_cols=45 Identities=20% Similarity=0.049 Sum_probs=22.9
Q ss_pred HHHHHHhcCCceEEecC--CCCCCCcchHHHHHHHHh-cCe-EEEEecC
Q 044867 29 HLYSTLCRQNIQTFIDD--QLNRGDEISESLLNAIQA-SAI-SVIVFSE 73 (81)
Q Consensus 29 ~L~~~L~~~g~~v~~d~--~~~~G~~~~~~i~~aI~~-S~~-~I~v~S~ 73 (81)
.|.+.|+++|+.|..-. +..+.....+.+.+.+++ ..+ .|++.|+
T Consensus 171 ~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~ 219 (286)
T 1jr2_A 171 ILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSP 219 (286)
T ss_dssp CHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSH
T ss_pred HHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEECh
Confidence 56677888887643221 122233333455566654 333 4444554
No 220
>2kx2_A MTH1821, putative uncharacterized protein; structural genomics, U function, structural genomics consortium, SGC; NMR {Methanobacterium thermoautotrophicum}
Probab=20.34 E-value=1e+02 Score=17.60 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=27.4
Q ss_pred EEEeceeccCcccHHHHHHHHHhc-----CC---ceEEecCC-CCCC
Q 044867 13 VFVSFRGEDTRDNFTSHLYSTLCR-----QN---IQTFIDDQ-LNRG 50 (81)
Q Consensus 13 VFISy~~~D~~~~~~~~L~~~L~~-----~g---~~v~~d~~-~~~G 50 (81)
=|++|+-.+-..+-.++|.+.|+. +| |++++.++ ++=|
T Consensus 21 ~yV~y~vsgl~e~~~~kL~~~le~~~~~~ng~L~it~~f~keyFPFg 67 (96)
T 2kx2_A 21 NYVRYRVSGLDEELTEKLIERLDEDTERDDGDLIITVFYEREYFPFG 67 (96)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHCSEEEEETTEEEEECCBCGGGCCSC
T ss_pred eEEEEEecCCCHHHHHHHHHhccCceEEecCcEEEEEEeeecccCCC
Confidence 478887777666778889998863 45 67777776 5444
No 221
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.32 E-value=1.4e+02 Score=17.33 Aligned_cols=36 Identities=6% Similarity=0.112 Sum_probs=22.2
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHh
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQA 63 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~ 63 (81)
.-..++.+-.+.+|+++--- ..-+.+.+.|.+-+.+
T Consensus 13 etlrkfkdiikkngfkvrtv---rspqelkdsieelvkk 48 (134)
T 2l69_A 13 ETLRKFKDIIKKNGFKVRTV---RSPQELKDSIEELVKK 48 (134)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---CSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCceEEEe---cCHHHHHHHHHHHHHH
Confidence 44678888889999987543 3334445555554443
No 222
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=20.27 E-value=1.2e+02 Score=16.60 Aligned_cols=41 Identities=17% Similarity=0.368 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCceEEecCCCCCCCcchHHHHHHHHhcCeEEE
Q 044867 26 FTSHLYSTLCRQNIQTFIDDQLNRGDEISESLLNAIQASAISVI 69 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~~~~~G~~~~~~i~~aI~~S~~~I~ 69 (81)
....+...+++.|+++-.. +..|+ ..+.|.+..++++..|+
T Consensus 67 ~l~~~~~~~~~~g~~~~~~--v~~g~-~~~~I~~~a~~~dliV~ 107 (138)
T 3idf_A 67 LTQKFSTFFTEKGINPFVV--IKEGE-PVEMVLEEAKDYNLLII 107 (138)
T ss_dssp HHHHHHHHHHTTTCCCEEE--EEESC-HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHCCCCeEEE--EecCC-hHHHHHHHHhcCCEEEE
Confidence 4455555666778764221 45675 46788888885554443
No 223
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=20.26 E-value=60 Score=23.15 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCceEEecC
Q 044867 26 FTSHLYSTLCRQNIQTFIDD 45 (81)
Q Consensus 26 ~~~~L~~~L~~~g~~v~~d~ 45 (81)
-.++|.+++.++|++|.+|-
T Consensus 83 dfk~Lv~~aH~~Gi~VilD~ 102 (515)
T 1hvx_A 83 QYLQAIQAAHAAGMQVYADV 102 (515)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 45789999999999999983
No 224
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=20.26 E-value=98 Score=18.96 Aligned_cols=39 Identities=8% Similarity=0.086 Sum_probs=20.9
Q ss_pred HHHHHHHHh---cCCceEEecCCCCCCC--cchHHHHHHHH--hcCeE
Q 044867 27 TSHLYSTLC---RQNIQTFIDDQLNRGD--EISESLLNAIQ--ASAIS 67 (81)
Q Consensus 27 ~~~L~~~L~---~~g~~v~~d~~~~~G~--~~~~~i~~aI~--~S~~~ 67 (81)
...|...|+ +.|+.+ . ..+.+.+ .|.+.|.++++ +++++
T Consensus 27 ~~~l~~~l~~l~~~G~~v-~-~~iv~Dd~~~I~~~l~~~~~~~~~DlV 72 (178)
T 2pbq_A 27 GKAIIDYLKDVIITPFEV-E-YRVIPDERDLIEKTLIELADEKGCSLI 72 (178)
T ss_dssp HHHHHHHHHHHBCSCCEE-E-EEEECSCHHHHHHHHHHHHHTSCCSEE
T ss_pred HHHHHHHHHHHHhCCCEE-E-EEEcCCCHHHHHHHHHHHHhcCCCCEE
Confidence 345666555 899987 2 2233332 34555656555 45544
No 225
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=20.22 E-value=91 Score=20.22 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=21.6
Q ss_pred cHHHHHHHHHhcCCceEEecCCCCCCC-cchHHHHHHHHhcC
Q 044867 25 NFTSHLYSTLCRQNIQTFIDDQLNRGD-EISESLLNAIQASA 65 (81)
Q Consensus 25 ~~~~~L~~~L~~~g~~v~~d~~~~~G~-~~~~~i~~aI~~S~ 65 (81)
.....+.++|++.|+.+-..+.+..|+ .+. .....|...+
T Consensus 174 ~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~-~~~~~~~~~~ 214 (386)
T 3sg0_A 174 GYYKVLAAAAPKLGFELTTHEVYARSDASVT-GQVLKIIATK 214 (386)
T ss_dssp HHHHHHHHHHHHHTCEECCCEEECTTCSCCH-HHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCcHH-HHHHHHHhcC
Confidence 456666777788887654333344443 344 3444555444
No 226
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=20.21 E-value=98 Score=16.73 Aligned_cols=26 Identities=12% Similarity=0.225 Sum_probs=18.3
Q ss_pred EEeceeccCcccHHHHHHHHHhcCCceEEec
Q 044867 14 FVSFRGEDTRDNFTSHLYSTLCRQNIQTFID 44 (81)
Q Consensus 14 FISy~~~D~~~~~~~~L~~~L~~~g~~v~~d 44 (81)
-|+|...| +..+.+.|+++|+++...
T Consensus 80 hiaf~v~d-----i~~~~~~l~~~G~~~~~~ 105 (133)
T 3hdp_A 80 HICYEVED-----IQKSIEEMSQIGYTLFKK 105 (133)
T ss_dssp EEEEEESC-----HHHHHHHHTTTTEEEEEE
T ss_pred EEEEEcCC-----HHHHHHHHHHcCCccccC
Confidence 45666655 567788889999876543
Done!