BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044868
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 2/174 (1%)
Query: 161 GPIPPQISS--LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218
GPI P + LQ L L N G+IP + + + LV L LS+N L+GTIP +G+L
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNK 278
L L L N L G IP + + L+ L L N LTG IP + + L +++LSNN+
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 279 LTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332
LTG PK + +L++L + +N +P E G L L L + ++G+IP
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
Query: 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218
L G IP + SL L+ L L N L G+IP ++ + +L L L +N L G IP + N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNK 278
NL + LS N LTG IP IG+L L L LS+NS +G+IP + L ++ L+ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 279 LTGNFPKGLAK---------LQSLQYFLMDDNPMFIPLPVEFGILVKLQELR-------- 321
G P + K + +Y + ++ M G L++ Q +R
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA-GNLLEFQGIRSEQLNRLS 605
Query: 322 ------LANSGYSGSIPPXXXXXXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFL 375
+ + Y G P L+G IP GS+ +++ LNL N +
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 376 DGVVPFNSSFLKRLGRNLDLSGN 398
G +P L+ L LDLS N
Sbjct: 666 SGSIPDEVGDLRGLNI-LDLSSN 687
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 4/224 (1%)
Query: 161 GPIPPQISSLKFLQILTLSQNRLNGQIPVK-IFSLNSLVHLDLSYNLLAGTIPVQVGNLR 219
G +PP S L+ L LS N +G++P+ + + L LDLS+N +G +P + NL
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 220 -NLVGLDLSYNSLTGSIPSTIGQ--LGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN 276
+L+ LDLS N+ +G I + Q LQ+L L +N TG IP ++ S L + LS
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 277 NKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXX 336
N L+G P L L L+ + N + +P E + L+ L L + +G IP
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 337 XXXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380
RLTGEIP G L ++ L LS N G +P
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 113/236 (47%), Gaps = 7/236 (2%)
Query: 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIP-VQVGN 217
L G IS+ L++L +S N+ G IP L SL +L L+ N G IP G
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 218 LRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIP-DSIDKLSLLAFMALSN 276
L GLDLS N G++P G +L+ L LSSN+ +G +P D++ K+ L + LS
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 277 NKLTGNFPKGLAKLQ-SLQYFLMDDNPMFIPLPVEFGILVK--LQELRLANSGYSGSIPP 333
N+ +G P+ L L SL + N P+ K LQEL L N+G++G IPP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 334 XXXXXXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRL 389
L+G IP GSLS + L L N L+G +P ++K L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 13/129 (10%)
Query: 170 LKFLQILTLSQNRLNGQIPVKIFSL-------------NSLVHLDLSYNLLAGTIPVQVG 216
L+F I + NRL+ + P I S S++ LD+SYN+L+G IP ++G
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 217 NLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN 276
++ L L+L +N ++GSIP +G L L LDLSSN L G IP ++ L++L + LSN
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 277 NKLTGNFPK 285
N L+G P+
Sbjct: 711 NNLSGPIPE 719
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 161 GPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRN 220
G P + + L +S N L+G IP +I S+ L L+L +N ++G+IP +VG+LR
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 221 LVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPD 261
L LDLS N L G IP + L ML ++DLS+N+L+G IP+
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 19/249 (7%)
Query: 170 LKFLQILTLSQNRLNGQIPVKIF---SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDL 226
L L++L LS N ++G V L HL +S N ++G V V NL LD+
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDV 204
Query: 227 SYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG 286
S N+ + IP +G LQ LD+S N L+G +I + L + +S+N+ G P
Sbjct: 205 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 262
Query: 287 LAKLQSLQYFLMDDNPMFIPLPVEF--GILVKLQELRLANSGYSGSIPPXXXXXXXXXXX 344
L+SLQY + +N +P +F G L L L+ + + G++PP
Sbjct: 263 -LPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 345 XXXXXRLTGEIPV-VFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGN----- 398
+GE+P+ + + L+LS N G +P + + L LDLS N
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 399 --PGLCLNP 405
P LC NP
Sbjct: 381 ILPNLCQNP 389
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218
L G IP +I S+ +L IL L N ++G IP ++ L L LDLS N L G IP + L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQL 242
L +DLS N+L+G IP +GQ
Sbjct: 701 TMLTEIDLSNNNLSGPIPE-MGQF 723
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 33/232 (14%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAG--TIPVQVGNLRNLVGLDLSYNSLT--G 233
LS + +NG + S SL LDLS N L+G T +G+ L L++S N+L G
Sbjct: 81 LSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 234 SIPSTIGQLGMLQKLDLSSNSLTGSIPDSI---DKLSLLAFMALSNNKLTG--------- 281
+ + +L L+ LDLS+NS++G+ D L +A+S NK++G
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 282 ---------NFPKG---LAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329
NF G L +LQ+ + N + +L+ L ++++ + G
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 330 SIPPXXXXXXXXXXXXXXXXRLTGEIP-VVFGSLSHIYHLNLSRNFLDGVVP 380
IPP + TGEIP + G+ + L+LS N G VP
Sbjct: 259 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 93/174 (53%), Gaps = 2/174 (1%)
Query: 161 GPIPPQISS--LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218
GPI P + LQ L L N G+IP + + + LV L LS+N L+GTIP +G+L
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNK 278
L L L N L G IP + + L+ L L N LTG IP + + L +++LSNN+
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 279 LTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332
LTG PK + +L++L + +N +P E G L L L + ++G+IP
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 116/263 (44%), Gaps = 25/263 (9%)
Query: 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218
L G IP + SL L+ L L N L G+IP ++ + +L L L +N L G IP + N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNK 278
NL + LS N LTG IP IG+L L L LS+NS +G+IP + L ++ L+ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 279 LTGNFPKGLAK---------LQSLQYFLMDDNPMFIPLPVEFGILVKLQELR-------- 321
G P + K + +Y + ++ M G L++ Q +R
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA-GNLLEFQGIRSEQLNRLS 608
Query: 322 ------LANSGYSGSIPPXXXXXXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFL 375
+ + Y G P L+G IP GS+ +++ LNL N +
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 376 DGVVPFNSSFLKRLGRNLDLSGN 398
G +P L+ L LDLS N
Sbjct: 669 SGSIPDEVGDLRGLNI-LDLSSN 690
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 4/224 (1%)
Query: 161 GPIPPQISSLKFLQILTLSQNRLNGQIPVK-IFSLNSLVHLDLSYNLLAGTIPVQVGNLR 219
G +PP S L+ L LS N +G++P+ + + L LDLS+N +G +P + NL
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 220 -NLVGLDLSYNSLTGSIPSTIGQ--LGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN 276
+L+ LDLS N+ +G I + Q LQ+L L +N TG IP ++ S L + LS
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 277 NKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXX 336
N L+G P L L L+ + N + +P E + L+ L L + +G IP
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 337 XXXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380
RLTGEIP G L ++ L LS N G +P
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 113/236 (47%), Gaps = 7/236 (2%)
Query: 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIP-VQVGN 217
L G IS+ L++L +S N+ G IP L SL +L L+ N G IP G
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 218 LRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIP-DSIDKLSLLAFMALSN 276
L GLDLS N G++P G +L+ L LSSN+ +G +P D++ K+ L + LS
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 277 NKLTGNFPKGLAKLQ-SLQYFLMDDNPMFIPLPVEFGILVK--LQELRLANSGYSGSIPP 333
N+ +G P+ L L SL + N P+ K LQEL L N+G++G IPP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 334 XXXXXXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRL 389
L+G IP GSLS + L L N L+G +P ++K L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 13/129 (10%)
Query: 170 LKFLQILTLSQNRLNGQIPVKIFSL-------------NSLVHLDLSYNLLAGTIPVQVG 216
L+F I + NRL+ + P I S S++ LD+SYN+L+G IP ++G
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 217 NLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN 276
++ L L+L +N ++GSIP +G L L LDLSSN L G IP ++ L++L + LSN
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 277 NKLTGNFPK 285
N L+G P+
Sbjct: 714 NNLSGPIPE 722
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 63/101 (62%)
Query: 161 GPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRN 220
G P + + L +S N L+G IP +I S+ L L+L +N ++G+IP +VG+LR
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 221 LVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPD 261
L LDLS N L G IP + L ML ++DLS+N+L+G IP+
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 112/249 (44%), Gaps = 19/249 (7%)
Query: 170 LKFLQILTLSQNRLNGQIPVKIF---SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDL 226
L L++L LS N ++G V L HL +S N ++G V V NL LD+
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDV 207
Query: 227 SYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG 286
S N+ + IP +G LQ LD+S N L+G +I + L + +S+N+ G P
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP- 265
Query: 287 LAKLQSLQYFLMDDNPMFIPLPVEF--GILVKLQELRLANSGYSGSIPPXXXXXXXXXXX 344
L+SLQY + +N +P +F G L L L+ + + G++PP
Sbjct: 266 -LPLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 345 XXXXXRLTGEIPV-VFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGN----- 398
+GE+P+ + + L+LS N G +P + + L LDLS N
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 399 --PGLCLNP 405
P LC NP
Sbjct: 384 ILPNLCQNP 392
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218
L G IP +I S+ +L IL L N ++G IP ++ L L LDLS N L G IP + L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQL 242
L +DLS N+L+G IP +GQ
Sbjct: 704 TMLTEIDLSNNNLSGPIPE-MGQF 726
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 33/232 (14%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAG--TIPVQVGNLRNLVGLDLSYNSLT--G 233
LS + +NG + S SL LDLS N L+G T +G+ L L++S N+L G
Sbjct: 84 LSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 234 SIPSTIGQLGMLQKLDLSSNSLTGSIPDSI---DKLSLLAFMALSNNKLTG--------- 281
+ + +L L+ LDLS+NS++G+ D L +A+S NK++G
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 282 ---------NFPKG---LAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329
NF G L +LQ+ + N + +L+ L ++++ + G
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 330 SIPPXXXXXXXXXXXXXXXXRLTGEIP-VVFGSLSHIYHLNLSRNFLDGVVP 380
IPP + TGEIP + G+ + L+LS N G VP
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 3/199 (1%)
Query: 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218
LVGPIPP I+ L L L ++ ++G IP + + +LV LD SYN L+GT+P + +L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGML-QKLDLSSNSLTGSIPDSIDKLSLLAFMALSNN 277
NLVG+ N ++G+IP + G L + +S N LTG IP + L+ LAF+ LS N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Query: 278 KLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXXX 337
L G+ ++ Q + N + L + G+ L L L N+ G++P
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 338 XXXXXXXXXXXXRLTGEIP 356
L GEIP
Sbjct: 267 LKFLHSLNVSFNNLCGEIP 285
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 4/221 (1%)
Query: 162 PIPPQISSLKFLQILTLSQ-NRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRN 220
PIP +++L +L L + N L G IP I L L +L +++ ++G IP + ++
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 221 LVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLS-LLAFMALSNNKL 279
LV LD SYN+L+G++P +I L L + N ++G+IPDS S L M +S N+L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 280 TGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXXXXX 339
TG P A L +L + + N + V FG Q++ LA + + +
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSK 244
Query: 340 XXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380
R+ G +P L ++ LN+S N L G +P
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 115/278 (41%), Gaps = 37/278 (13%)
Query: 43 PSEAETLFKIMDSM---SSDQSWRVSYSNPCKPGSSWPGIECKQGNDGYLHVTRLDFGT- 98
P + + L +I + ++ SW + ++ C +W G+ C Y V LD
Sbjct: 5 PQDKQALLQIKKDLGNPTTLSSW-LPTTDCCN--RTWLGVLCDTDTQTY-RVNNLDLSGL 60
Query: 99 ---RPNPTCKKTATFPYQIF---------------SLSYLQSVFFFSCFTHTKTTLSVSA 140
+P P A PY F +++ L + + THT + ++
Sbjct: 61 NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY-ITHTNVSGAI-P 118
Query: 141 DXXXXXXXXXXXXXXXPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSL-VH 199
D AL G +PP ISSL L +T NR++G IP S + L
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178
Query: 200 LDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSI 259
+ +S N L G IP NL NL +DLS N L G G QK+ L+ NSL
Sbjct: 179 MTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF-- 235
Query: 260 PDSIDKLSL---LAFMALSNNKLTGNFPKGLAKLQSLQ 294
+ K+ L L + L NN++ G P+GL +L+ L
Sbjct: 236 --DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 15/140 (10%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLT 232
LQI +S N IF + L L L+ N L +P ++ NL NL LDLS+N LT
Sbjct: 234 LQIFNISAN---------IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
Query: 233 GSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK--L 290
S+P+ +G L+ N +T ++P L L F+ + N L F K L + +
Sbjct: 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341
Query: 291 QSLQYFLMDDNPMFIPLPVE 310
L ++L D+ P IPLP E
Sbjct: 342 TGLIFYLRDNRPE-IPLPHE 360
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 158 ALVGPIPPQISSLKFLQILT---LSQNRLNGQIPVKIFS-LNSLVHLDLSYNLLAGTIPV 213
AL G IS+LK L LT L+ N+L +P +F L +L L L N L
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDG 127
Query: 214 QVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFM 272
L NL L+L++N L +L L +LDLS N L S+P+ + DKL+ L +
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186
Query: 273 ALSNNKLTGNFPKGL-AKLQSLQYFLMDDNPMFIPLP 308
L N+L P G+ +L SLQY + DNP P
Sbjct: 187 RLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 8/145 (5%)
Query: 168 SSLKFLQILTLSQNRLNGQIPVKIFSLN--SLVHLDLSYNLL-AGTIPVQVGNLRNLVGL 224
S+LK LQ L L +N L V + + N SL LD+S N L + +++ L
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 225 DLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFP 284
+LS N LTGS+ + ++ LDL +N + SIP + L L + +++N+L P
Sbjct: 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VP 489
Query: 285 KGL-AKLQSLQYFLMDDNPMFIPLP 308
G+ +L SLQY + DNP P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 165 PQISSLKFLQILTLSQNRLNGQIPVKIFSLN-SLVHLDLSYNLLAGTIPVQVGNLRNLVG 223
P IS L L++L LS NR+ + +F N L +LD+S+N L + +LR+
Sbjct: 70 PDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRH--- 125
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKL 248
LDLS+N + + G L KL
Sbjct: 126 LDLSFNDF--DVLPVCKEFGNLTKL 148
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 168 SSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227
+LK L++L L+ N++N + L++L L+LSYNLL L + +DL
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTG-----SIPDSIDKLSLLAFMALSNNKLTG- 281
N + T L LQ LDL N+LT SIPD + LS NKL
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPD----------IFLSGNKLVTL 396
Query: 282 ---NFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXXXX 338
N L L + L + + ++ L V ++ L + R S SG P
Sbjct: 397 PKINLTANLIHLSENR--LENLDILYFLLRVPHLQILILNQNRF--SSCSGDQTPSENPS 452
Query: 339 XXXXXXXXXXXRLTGEIPV---VFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDL 395
+L E + VF LSH+ L L+ N+L+ + P S L L R L L
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-RGLSL 511
Query: 396 SGN 398
+ N
Sbjct: 512 NSN 514
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSL 255
S+ HLDLS+ + L++L L+L+YN + L LQ L+LS N L
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 256 TGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPM----FIP 306
+ L +A++ L N + + L+ LQ + DN + FIP
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIP 381
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 168 SSLKFLQILTLSQNRLNGQIPVKIFS-LNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDL 226
LK L+ L ++ N+L +P+ +F L +L L L N L P +L L L L
Sbjct: 82 KELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 227 SYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG 286
YN L +L L++L L +N L + DKL+ L + L NN+L P+G
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEG 199
Query: 287 -LAKLQSLQYFLMDDNP 302
L+ L+ + +NP
Sbjct: 200 AFDSLEKLKMLQLQENP 216
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 8/112 (7%)
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
+D S LT +IPS I +KLDL SN L+ + +L+ L + L++NKL
Sbjct: 21 VDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TL 76
Query: 284 PKGLAK-LQSLQYFLMDDNPM-FIPLPVEFGILVKLQELRLANSGYSGSIPP 333
P G+ K L++L+ + DN + +P+ V F LV L ELRL + S+PP
Sbjct: 77 PAGIFKELKNLETLWVTDNKLQALPIGV-FDQLVNLAELRLDRNQLK-SLPP 126
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 173 LQILTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQV-GNLRNLVGLDLSYNS 230
L++L L+ N+L +P IF L +L L ++ N L +P+ V L NL L L N
Sbjct: 63 LRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQ 120
Query: 231 LTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFPKG-LA 288
L P L L L L N L S+P + DKL+ L + L NN+L P+G
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFD 178
Query: 289 KLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS 328
KL L+ +D+N + F L KL+ L+L + +
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLT 232
L+ LTL+QN +N + L L+ L+LS N L NL L LDLSYN +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 233 GSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFPK 285
+ L L++L L +N L S+PD I D+L+ L + L N + P+
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 170 LKFLQILTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSY 228
L L L LSQN L G I ++F +L+ L LDLSYN + L NL L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 229 NSLTGSIPSTI-GQLGMLQKLDLSSNSLTGSIPDSIDKLS 267
N L S+P I +L LQK+ L +N S P ID LS
Sbjct: 381 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP-RIDYLS 418
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 174 QILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQV-GNLRNLVGLDLSYNSLT 232
QIL L N++ P SL +L L L N L G +PV V +L L LDL N LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 233 GSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG-LAKLQ 291
+ +L L++L + N LT +P I++L+ L +AL N+L + P G +L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLS 159
Query: 292 SLQYFLMDDNP 302
SL + + NP
Sbjct: 160 SLTHAYLFGNP 170
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 164 PPQISSLKFLQILTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQVGNLRNLV 222
P SL L+ L L N+L G +PV +F SL L LDL N L L +L
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPD-SIDKLSLLAFMALSNN 277
L + N LT +P I +L L L L N L SIP + D+LS L L N
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
Query: 176 LTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQVGN-LRNLVGLDLSYNSLTG 233
L L N L +P +F L SL L L N L ++P V N L +L L+LS N L
Sbjct: 33 LDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 234 SIPSTI-GQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFPKGL-AKL 290
S+P+ + +L L++L L++N L S+PD + DKL+ L + L N+L + P G+ +L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRL 147
Query: 291 QSLQYFLMDDNPMFIPLP 308
SLQY + DNP P
Sbjct: 148 TSLQYIWLHDNPWDCTCP 165
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Query: 224 LDLSYNSLTGSIPSTI-GQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTG 281
LDL NSL S+P+ + +L L +L L N L S+P+ + +KL+ L ++ LS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 282 NFPKGL-AKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRL 322
+ P G+ KL L+ ++ N + F L +L++LRL
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN+LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN+LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN+LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN+LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 12/170 (7%)
Query: 168 SSLKFLQILTLSQNRLNGQIPV--KIFSLNSLVHLDLSYNLLAGTIPVQVG-NLRNLVGL 224
+SLK+L + NG I + L L HLD ++ L V +LRNL+ L
Sbjct: 373 TSLKYLDL------SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 225 DLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGS-IPDSIDKLSLLAFMALSNNKLTGNF 283
D+S+ + L L+ L ++ NS + +PD +L L F+ LS +L
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 284 PKGLAKLQSLQYFLMDDNPM-FIPLPVEFGILVKLQELRLANSGYSGSIP 332
P L SLQ M N + +P + F L LQ++ L + + S P
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP 535
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 211 IPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLL 269
+P LRNL LDLS L P+ L LQ L+++SN L S+PD I D+L+ L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSL 520
Query: 270 AFMALSNNKLTGNFPK 285
+ L N + P+
Sbjct: 521 QKIWLHTNPWDCSCPR 536
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 11/146 (7%)
Query: 161 GPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVG-NLR 219
G I + L F ++T+S N L L L HLD ++ L V +LR
Sbjct: 395 GTISLKYLDLSFNGVITMSSNFL---------GLEQLEHLDFQHSNLKQMSEFSVFLSLR 445
Query: 220 NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGS-IPDSIDKLSLLAFMALSNNK 278
NL+ LD+S+ + L L+ L ++ NS + +PD +L L F+ LS +
Sbjct: 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505
Query: 279 LTGNFPKGLAKLQSLQYFLMDDNPMF 304
L P L SLQ M N F
Sbjct: 506 LEQLSPTAFNSLSSLQVLNMSHNNFF 531
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 68 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 119
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN LT P GL L++L
Sbjct: 120 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 178
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 179 LLQENSLY 186
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 178 LSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237
L++ +++G +PV L LDLS+N L ++P+ L L LD+S+N LT
Sbjct: 67 LTKLQVDGTLPV-------LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYF 296
+ LG LQ+L L N L P + L ++L+NN LT P GL L++L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177
Query: 297 LMDDNPMF 304
L+ +N ++
Sbjct: 178 LLQENSLY 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 168 SSLKFLQILTLSQNRLNGQIPV--KIFSLNSLVHLDLSYNLLAGTIPVQVG-NLRNLVGL 224
+SLK+L + NG I + L L HLD ++ L V +LRNL+ L
Sbjct: 373 TSLKYLDL------SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 225 DLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGS-IPDSIDKLSLLAFMALSNNKLTGNF 283
D+S+ + L L+ L ++ NS + +PD +L L F+ LS +L
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 284 PKGLAKLQSLQYFLMDDNPMF 304
P L SLQ M N F
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFF 507
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 168 SSLKFLQILTLSQNRLNGQIPV--KIFSLNSLVHLDLSYNLLAGTIPVQVG-NLRNLVGL 224
+SLK+L + NG I + L L HLD ++ L V +LRNL+ L
Sbjct: 78 TSLKYLDL------SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131
Query: 225 DLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGS-IPDSIDKLSLLAFMALSNNKLTGNF 283
D+S+ + L L+ L ++ NS + +PD +L L F+ LS +L
Sbjct: 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 191
Query: 284 PKGLAKLQSLQYFLMDDNPMF 304
P L SLQ M N F
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFF 212
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 28/161 (17%)
Query: 198 VHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLT--GSIPSTIGQLGMLQKLDLSSNSL 255
+HLD S NLL T+ G+L L L L N L I Q+ LQ+LD+S NS+
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 256 T-----GSIPDSIDKLSL------------------LAFMALSNNKLTGNFPKGLAKLQS 292
+ G + LSL + + L +NK+ PK + KL++
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEA 445
Query: 293 LQYFLMDDNPM-FIPLPVEFGILVKLQELRLANSGYSGSIP 332
LQ + N + +P + F L LQ++ L + + S P
Sbjct: 446 LQELNVASNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP 485
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 160 VGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSL-NSLVHLDLSYNLLAGTI----PVQ 214
+ I + +K LQ L +SQN ++ S SL+ L++S N+L TI P +
Sbjct: 363 LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422
Query: 215 VGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMA 273
+ LDL N + SIP + +L LQ+L+++SN L S+PD I D+L+ L +
Sbjct: 423 IK------VLDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIW 474
Query: 274 LSNNKLTGNFPK 285
L N + P+
Sbjct: 475 LHTNPWDCSCPR 486
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 1/169 (0%)
Query: 164 PPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVG 223
P L L L L + L P L +L +L L N L +L NL
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
L L N ++ L L +L L N + P + L L + L N L+
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 284 PKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332
+ LA L++LQY ++DNP + LQ+ R ++S S+P
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 265
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSI-PDSIDKLSLLAFMALSNN 277
RNL L L N L + L +L++LDLS N+ S+ P + L L + L
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 278 KLTGNFPKGLAKLQSLQYFLMDDNPM 303
L P L +LQY + DN +
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNAL 141
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 1/169 (0%)
Query: 164 PPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVG 223
P L L L L + L P L +L +L L N L +L NL
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
L L N ++ L L +L L N + P + L L + L N L+
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 284 PKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332
+ LA L++LQY ++DNP + LQ+ R ++S S+P
Sbjct: 217 TEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLP 264
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSI-PDSIDKLSLLAFMALSNN 277
RNL L L N L + L +L++LDLS N+ S+ P + L L + L
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 278 KLTGNFPKGLAKLQSLQYFLMDDNPM 303
L P L +LQY + DN +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNAL 140
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 104/283 (36%), Gaps = 54/283 (19%)
Query: 54 DSMSSDQSWRVSYSNPCKPGSSWPGIECKQGNDGYLHVTRLDFGTRPNPTCKKTAT---- 109
D +WR + SN P IE + G L+ T+P + +
Sbjct: 42 DRNRWHSAWRQANSNN-------PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP 94
Query: 110 -FPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADXXXXXXXXXXXXXXXPALVGPIPPQIS 168
FP Q F LS+LQ + A + +P
Sbjct: 95 QFPDQAFRLSHLQHXTIDA------------------------------AGLXELPDTXQ 124
Query: 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGN---------LR 219
L+ LTL++N L +P I SLN L L + +P + + L
Sbjct: 125 QFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 220 NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKL 279
NL L L + + S+P++I L L+ L + ++ L+ P +I L L + L
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTA 241
Query: 280 TGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRL 322
N+P L+ ++ D + LP++ L +L++L L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGN 282
L+L N L +L L KL LS N + S+PD + DKL+ L + L NKL +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-S 90
Query: 283 FPKGL-AKLQSLQYFLMDDNPM-FIPLPVEFGILVKLQELRLANSGYSGSIP 332
P G+ KL L+ +D N + +P + F L LQ++ L + + S P
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP 141
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 195 NSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNS 254
+S L+L N L L L L LS N + +L L L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 255 LTGSIPDSI-DKLSLLAFMALSNNKLTGNFPKGL-AKLQSLQYFLMDDNPMFIPLP 308
L S+P+ + DKL+ L +AL N+L + P G+ +L SLQ + NP P
Sbjct: 88 LQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 9/151 (5%)
Query: 158 ALVGPIPPQISSLKFLQILT---LSQNRLNGQIPVKIFS-LNSLVHLDLSYNLLAGTIPV 213
AL G IS+LK L LT L+ N+L +P +F L +L L L N L
Sbjct: 69 ALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDG 127
Query: 214 QVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFM 272
L NL L L +N L +L L +LDL +N L S+P+ + DKL+ L +
Sbjct: 128 VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQL 186
Query: 273 ALSNNKLTGNFPKGL-AKLQSLQYFLMDDNP 302
+L++N+L P G+ +L SL + + +NP
Sbjct: 187 SLNDNQLKS-VPDGVFDRLTSLTHIWLLNNP 216
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 166 QISSLKFLQILTLSQNRLNGQIPVKIFS-LNSLVHLDLSYNLLAGTIPVQV-GNLRNLVG 223
+ L L+ + RL IP + + + +L HL+L N+ +P + +L NL
Sbjct: 118 HLDRLHGLKRFRFTTRRLT-HIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENLES 174
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGN 282
++ N L G++ L++L+L+SN L S+PD I D+L+ L + L N +
Sbjct: 175 IEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 233
Query: 283 FPK 285
P+
Sbjct: 234 CPR 236
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 240 GQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMD 299
G+L L KL+L N LTG P++ + S + + L NK+ K L L+ +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 300 DNPMFIPLPVEFGILVKLQELRLANSGYS 328
DN + +P F L L L LA++ ++
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 229 NSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG-L 287
N +T P +L L +LDL +N LT DKL+ L ++L++N+L + P+G
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAF 98
Query: 288 AKLQSLQYFLMDDNPM 303
L+SL + + +NP
Sbjct: 99 DNLRSLTHIWLLNNPW 114
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
+D S SL S+P+ I Q L L N +T P D+L+ L + L NN+LT
Sbjct: 14 VDCSGKSL-ASVPTGIPT--TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTV-L 69
Query: 284 PKGL-AKLQSLQYFLMDDNPM 303
P G+ KL L ++DN +
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQL 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 229 NSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG-L 287
N +T P +L L +LDL +N LT DKL+ L ++L++N+L + P+G
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 106
Query: 288 AKLQSLQYFLMDDNPM 303
L+SL + + +NP
Sbjct: 107 DNLKSLTHIWLLNNPW 122
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
+D S SL S+P+ I Q L L N +T P D+L+ L + L NN+LT
Sbjct: 22 VDCSGKSL-ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-L 77
Query: 284 PKGL-AKLQSLQYFLMDDNPM 303
P G+ KL L ++DN +
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQL 98
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 229 NSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG-L 287
N +T P +L L +LDL +N LT DKL+ L ++L++N+L + P+G
Sbjct: 40 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAF 98
Query: 288 AKLQSLQYFLMDDNPM 303
L+SL + + +NP
Sbjct: 99 DNLKSLTHIWLLNNPW 114
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
+D S SL S+P+ I Q L L N +T P D+L+ L + L NN+LT
Sbjct: 14 VDCSGKSL-ASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-L 69
Query: 284 PKGL-AKLQSLQYFLMDDNPM 303
P G+ KL L ++DN +
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQL 90
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 194 LNSLVHLDLSYNLLAGT--IPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLS 251
L +L LDLS++ + + +Q+ NLR+L L+LSYN G + L+ LD++
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 252 SNSLTGSIPDS-IDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDN 301
L P S L LL + LS+ L + LA LQ L++ + N
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 173 LQILTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSL 231
L++L ++ L+ + P F +L+ L L+LS+ LL + + L++L L+L NS
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 232 T-GSIPST--IGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLA 288
GSI T + +G L+ L LSS +L + L + + LS+N LTG+ L+
Sbjct: 461 QDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALS 520
Query: 289 KLQSLQYFLMDDNPMFIP 306
L+ L + +N IP
Sbjct: 521 HLKGLYLNMASNNIRIIP 538
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 183 LNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQL 242
L+ P ++ LN L L +++ L + V +L L L+LSYN ++ S + +L
Sbjct: 213 LDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 243 GMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNP 302
LQ++ L L P + L+ L + +S N+LT + +L+ ++D NP
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331
Query: 303 M 303
+
Sbjct: 332 L 332
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 21/125 (16%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAG-TIPVQVGNLR------------ 219
LQ L LS NRL V + + SL H ++SYNLL+ IP+ V L
Sbjct: 167 LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223
Query: 220 ---NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN 276
L L L +N+LT + + + L ++DLS N L + K+ L + +SN
Sbjct: 224 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 277 NKLTG 281
N+L
Sbjct: 282 NRLVA 286
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSI-PDSIDKLSLLAFMALSNN 277
RNL L L N+L G + L +L++LDLS N+ + P + L L + L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 278 KLTGNFPKGLAKLQSLQYFLMDDN 301
L P L +LQY + DN
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDN 138
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Query: 164 PPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVG 223
P L L L L + L P L +L +L L N L +L NL
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
L L N + L L +L L N + P + L L + L N L+
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLP 216
Query: 284 PKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332
+ L L+SLQY ++DNP + LQ+ R ++S ++P
Sbjct: 217 AEVLVPLRSLQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCNLP 264
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 174 QILTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLT 232
Q + L NR++ +P F S +L L L N LAG L L LDLS N+
Sbjct: 34 QRIFLHGNRIS-YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQL 92
Query: 233 GSI-PSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQ 291
+ P+T LG L L L L P L+ L ++ L +N L L
Sbjct: 93 RVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG 152
Query: 292 SLQYFLMDDN 301
+L + + N
Sbjct: 153 NLTHLFLHGN 162
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 226 LSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFP 284
L+ N +T P L LQ+L +SN LT +IP + DKL+ L + L++N L P
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKS-IP 97
Query: 285 KG-LAKLQSLQYFLMDDNPM 303
+G L+SL + + +NP
Sbjct: 98 RGAFDNLKSLTHIYLYNNPW 117
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 187 IPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246
+P ++ + L +DLS N ++ N+ L+ L LSYN L P T L L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 247 KLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKL 279
L L N ++ + + LS L+ +A+ N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%)
Query: 163 IPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLV 222
+P ++S+ K L ++ LS NR++ ++ L+ L LSYN L P L++L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSL 255
L L N ++ L L L + +N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDL---SYN 229
LQ L L+ N +N SL SL HLDLSYN L+ L +L L+L Y
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 230 SLTGSIPSTIGQLGMLQKLDLSS-NSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLA 288
+L + S L LQ L + + ++ T L+ L + + + L PK L
Sbjct: 138 TLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195
Query: 289 KLQSLQYFL--MDDNPMFIPLPVEFGILVKLQELR 321
+Q++ + + M + + + + V+ V+ ELR
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
LDLS N +T S + + LQ L L+SN + DS L L + LS N L+
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 284 PKGLAKLQSLQYFLMDDNPM-FIPLPVEFGILVKLQELRLAN 324
L SL + + NP + F L KLQ LR+ N
Sbjct: 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 36/185 (19%)
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN 282
+DLS+N L + LQ LDLS + ++I+ + LSN LTGN
Sbjct: 31 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-----ETIEDKAWHGLHHLSNLILTGN 85
Query: 283 -----FPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXXX 337
P + L SL+ + + + G L+ L++L +A++
Sbjct: 86 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH--------- 136
Query: 338 XXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLK---RLGRNLD 394
+ ++P F +L+++ H++LS N++ + + FL+ ++ +LD
Sbjct: 137 --------------SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 182
Query: 395 LSGNP 399
+S NP
Sbjct: 183 MSLNP 187
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 36/185 (19%)
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN 282
+DLS+N L + LQ LDLS + ++I+ + LSN LTGN
Sbjct: 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI-----ETIEDKAWHGLHHLSNLILTGN 90
Query: 283 -----FPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXXX 337
P + L SL+ + + + G L+ L++L +A++
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH--------- 141
Query: 338 XXXXXXXXXXXXRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLK---RLGRNLD 394
+ ++P F +L+++ H++LS N++ + + FL+ ++ +LD
Sbjct: 142 --------------SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187
Query: 395 LSGNP 399
+S NP
Sbjct: 188 MSLNP 192
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAG-TIPVQVGNLR------------ 219
LQ L LS NRL V + + SL H ++SYNLL+ IP+ V L
Sbjct: 173 LQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229
Query: 220 ---NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN 276
L L L +N+LT + + G+++ +DLS N L + K+ L + +SN
Sbjct: 230 VNVELTILKLQHNNLTDT-AWLLNYPGLVE-VDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 277 NKLTG 281
N+L
Sbjct: 288 NRLVA 292
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDL---SYN 229
LQ L L+ N +N SL SL HLDLSYN L+ L +L L+L Y
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 230 SLTGSIPSTIGQLGMLQKLDLSS-NSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLA 288
+L + S L LQ L + + ++ T L+ L + + + L PK L
Sbjct: 112 TLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 169
Query: 289 KLQSLQYFL--MDDNPMFIPLPVEFGILVKLQELR 321
+Q++ + + M + + + + V+ V+ ELR
Sbjct: 170 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 204
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN 282
LDLS N +T S + + LQ L L+SN + DS L L + LS N L+
Sbjct: 30 SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 89
Query: 283 FPKGLAKLQSLQYFLMDDNPM-FIPLPVEFGILVKLQELRLAN 324
L SL + + NP + F L KLQ LR+ N
Sbjct: 90 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 132
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF 283
L L N +T P L L L+L+ N LT DKL+ L +AL N+L +
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSI 103
Query: 284 PKGL-AKLQSLQYFLMDDNP 302
P G+ L+SL + + +NP
Sbjct: 104 PMGVFDNLKSLTHIYLFNNP 123
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 176 LTLSQNRLNGQIPVKI---FSLNSLVHLDLSYNLLAGTIPVQVGNLR--NLVGLDLSYNS 230
L L+ +LN + K+ S S+ +L L+ N L T L+ NL LDLSYN+
Sbjct: 200 LLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNN 259
Query: 231 LTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKL 290
L + L L+ L L N++ P S LS L +++L F K L
Sbjct: 260 LHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR-----AFTKQSVSL 314
Query: 291 QS--------------LQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPXXX 336
S L+Y MDDN + F LV L+ L L+ + S
Sbjct: 315 ASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTS-------- 366
Query: 337 XXXXXXXXXXXXXRLTGEIPVVFGSLSH--IYHLNLSRNFLDGVVPFNSSFLKRLGRNLD 394
LT E F SL+H + LNL++N + + S+L +L R LD
Sbjct: 367 -----------LQTLTNE---TFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQL-RILD 411
Query: 395 LSGN 398
L N
Sbjct: 412 LGLN 415
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 160 VGPIPPQISS-LKFLQILTLSQNRLNGQIPVKIFSL-NSLVHLDLSYNLLAGTIPVQVGN 217
+ + P++ L L++L L N L QI + F +L LDL N + N
Sbjct: 61 ISKLEPELCQILPLLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKN 119
Query: 218 LRNLVGLDLSYNSLTGS 234
+NL+ LDLS+N L+ +
Sbjct: 120 QKNLIKLDLSHNGLSST 136
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 170 LKFLQILTLSQNRLNGQIPVKIFS-LNSLVHLDLSYNLLAGTIPVQV-GNLRNLVGLDLS 227
L L L L N+L + +F L L L L+ N LA ++P+ V +L L L L
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLG 115
Query: 228 YNSLTGSIPSTI-GQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLT----GN 282
N L S+PS + +L L++L L++N L + DKL+ L ++LS N+L G
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 283 FPKGLAKLQSLQYF 296
F + L KLQ++ F
Sbjct: 175 FDR-LGKLQTITLF 187
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 194 LNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIP-STIGQLGMLQKLDLSS 252
L L L+L YN L +L L L L+ N L S+P L L KL L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 253 NSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFPKG-LAKLQSLQYFLMDDNPMFIPLPVE 310
N L S+P + D+L+ L + L+ N+L + P G KL +LQ + N +
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 311 FGILVKLQELRL 322
F L KLQ + L
Sbjct: 175 FDRLGKLQTITL 186
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 170 LKFLQILTLSQNRLNGQIPVKIFS-LNSLVHLDLSYNLLAGTIPVQV-GNLRNLVGLDLS 227
L L L L N+L + +F L L L L+ N LA ++P+ V +L L L L
Sbjct: 58 LTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLG 115
Query: 228 YNSLTGSIPSTI-GQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLT----GN 282
N L S+PS + +L L++L L++N L + DKL+ L ++LS N+L G
Sbjct: 116 GNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 283 FPKGLAKLQSLQYF 296
F + L KLQ++ F
Sbjct: 175 FDR-LGKLQTITLF 187
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 194 LNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIP-STIGQLGMLQKLDLSS 252
L L L+L YN L +L L L L+ N L S+P L L KL L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGG 116
Query: 253 NSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFPKG-LAKLQSLQYFLMDDNPMFIPLPVE 310
N L S+P + D+L+ L + L+ N+L + P G KL +LQ + N +
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 311 FGILVKLQELRL 322
F L KLQ + L
Sbjct: 175 FDRLGKLQTITL 186
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSL 255
SL L L N + + L NL L LS+NS++ ++ L++L L++N L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 256 TGSIPDSIDKLSLLAFMALSNNKLTG 281
+P + + + L NN ++
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSL 255
SL L L N + + L NL L LS+NS++ ++ L++L L++N L
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 256 TGSIPDSIDKLSLLAFMALSNNKLTG 281
+P + + + L NN ++
Sbjct: 253 V-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 218 LRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNN 277
L NL+GL+L N +T P + L + +L+LS N L +I L + + L++
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 117
Query: 278 KLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332
++T P LA L +LQ +D N + P L LQ L + N+ S P
Sbjct: 118 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 63/143 (44%), Gaps = 14/143 (9%)
Query: 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLA-GTIP-----VQVGNLRNLV 222
+L FLQ+L L+ L+ + L L HL+L N GTI VG+L L+
Sbjct: 420 NLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLI 479
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLA--FMALSNNKLT 280
LS L LG + +DLS NSLT DSID LS L ++ L+ N +
Sbjct: 480 ---LSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC---DSIDSLSHLKGIYLNLAANSIN 533
Query: 281 GNFPKGLAKLQSLQYFLMDDNPM 303
P+ L L + NP+
Sbjct: 534 IISPRLLPILSQQSTINLSHNPL 556
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 160 VGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLR 219
+ I P +++L L LTL N++ P+K +L +L L+LS N ++ I G L
Sbjct: 97 IADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD-ISALSG-LT 151
Query: 220 NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKL 279
+L L S N +T P + L L++LD+SSN + S + KL+ L + +NN++
Sbjct: 152 SLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQI 207
Query: 280 TGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGI---LVKLQELRLANSGYSGSIP 332
+ P G+ L +L ++ N + + G L L +L LAN+ S P
Sbjct: 208 SDITPLGI--LTNLDELSLNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP 256
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 182 RLNGQIP------VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSI 235
L+G IP + +L + HL LS N + + + NL L L N L I
Sbjct: 30 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRN-LIKKI 86
Query: 236 PSTIGQLGMLQKLDLSSN---SLTGSIPDSIDKLSLLAFMALSNNKLT--GNFPKGLAKL 290
+ L++L +S N SL+G I+KL L + +SNNK+T G K LA L
Sbjct: 87 ENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDK-LAAL 140
Query: 291 QSLQYFLMDDNPMF 304
L+ L+ NP++
Sbjct: 141 DKLEDLLLAGNPLY 154
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 20/134 (14%)
Query: 182 RLNGQIP------VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSI 235
L+G IP + +L + HL LS N + + + NL L L N L I
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRN-LIKKI 85
Query: 236 PSTIGQLGMLQKLDLSSN---SLTGSIPDSIDKLSLLAFMALSNNKLT--GNFPKGLAKL 290
+ L++L +S N SL+G I+KL L + +SNNK+T G K LA L
Sbjct: 86 ENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDK-LAAL 139
Query: 291 QSLQYFLMDDNPMF 304
L+ L+ NP++
Sbjct: 140 DKLEDLLLAGNPLY 153
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYN 229
LQ+L L +R+N +SL SL HLDLS N L+ G L +L L+L N
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN 282
LDLS+N +T + LQ L L S+ + D+ L L + LS+N L+
Sbjct: 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89
Query: 283 FPKGLAKLQSLQYFLMDDNPMFIPLPVE--FGILVKLQELRLAN 324
L SL+Y + NP + L V F L LQ LR+ N
Sbjct: 90 SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGN 132
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 19/176 (10%)
Query: 160 VGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLR 219
+ I P +++L L LTL N++ P+K +L +L L+LS N ++ I G L
Sbjct: 97 IADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISD-ISALSG-LT 151
Query: 220 NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKL 279
+L L S N +T P + L L++LD+SSN + S + KL+ L + +NN++
Sbjct: 152 SLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQI 207
Query: 280 TGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGI---LVKLQELRLANSGYSGSIP 332
+ P G+ L +L ++ N + + G L L +L LAN+ S P
Sbjct: 208 SDITPLGI--LTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP 256
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYN 229
LQ+L L +R+N +SL SL HLDLS N L+ G L +L L+L N
Sbjct: 78 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN 282
LDLS+N +T + LQ L L S+ + D+ L L + LS+N L+
Sbjct: 56 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 115
Query: 283 FPKGLAKLQSLQYFLMDDNPMFIPLPVE--FGILVKLQELRLAN 324
L SL+Y + NP + L V F L LQ LR+ N
Sbjct: 116 SSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGN 158
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 218 LRNLVGLDLSYNSLTGSIP--------------------STIGQLGMLQKLDLSSNSLTG 257
L NL+GL+L N +T P S I L ++ LDL+S +T
Sbjct: 68 LNNLIGLELKDNQITDLTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 127
Query: 258 SIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKL 317
P + LS L + L N++T P LA L +LQY + +N + P L KL
Sbjct: 128 VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKL 181
Query: 318 QELRLANSGYSGSIP 332
LR ++ S P
Sbjct: 182 TTLRADDNKISDISP 196
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 175 ILTLSQNRLNGQIPVKIFSLNSLVHLDLSYN----LLAGTIPVQVGNLRNLVGLDLSYNS 230
IL+ S+ +L +P + S +L LDLS+N L A P ++ NL +L+ LS+N
Sbjct: 22 ILSCSKQQL-PNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNH 75
Query: 231 LTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLT---GNFPKGL 287
L + L+ LDLSSN L L L + L NN + N + +
Sbjct: 76 LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 288 AKLQSL 293
A+LQ L
Sbjct: 136 AQLQKL 141
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 197 LVHLDLSYNLLAGTIPVQVGNLRNLVG-LDLSYNSLTGSIPSTIGQL 242
LVHL Y ++ G P+QVG++ + ++ N TG I +G L
Sbjct: 1350 LVHLSNGYKMIPGAKPLQVGDVVSTTAVIESVVNQPTGKIVDVVGTL 1396
>pdb|4B5H|A Chain A, Substate Bound Inactive Mutant Of Neisseria Ap
Endonuclease In Presence Of Metal Ions
Length = 259
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 36 QPPNGMLPSEAETLFKIMDSMSSDQSWRVSYSNPCKPGSSW 76
Q +G LP E E + K++ + WR Y P PG +W
Sbjct: 166 QKNSGFLPEEREWIGKVIHKLGWTDMWRTLY--PDVPGYTW 204
>pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From
Neisseria Meningitidis
pdb|4B5F|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 1)
pdb|4B5G|A Chain A, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|B Chain B, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5G|C Chain C, Substrate Bound Neisseria Ap Endonuclease In Absence Of
Metal Ions (Crystal Form 2)
pdb|4B5I|A Chain A, Product Complex Of Neisseria Ap Endonuclease In Presence
Of Metal Ions
pdb|4B5J|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With An
Orphan Adenine Base
pdb|4B5M|A Chain A, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|B Chain B, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
pdb|4B5M|C Chain C, Neisseria Ap Endonuclease Bound To The Substrate With A
Cytosine Orphan Base
Length = 259
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 36 QPPNGMLPSEAETLFKIMDSMSSDQSWRVSYSNPCKPGSSW 76
Q +G LP E E + K++ + WR Y P PG +W
Sbjct: 166 QKNSGFLPEEREWIGKVIHKLGWTDMWRTLY--PDVPGYTW 204
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 9/156 (5%)
Query: 173 LQILTLSQNRL---NGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYN 229
L++L L+ RL + Q P + +L+ L L+LS++LL + L L L+L N
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 230 SL-TGSIPST--IGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG 286
G+I T + LG L+ L LS L+ + L ++ + LS+N+LT + +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519
Query: 287 LAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRL 322
L+ L+ + Y + N + I LP IL + + + L
Sbjct: 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINL 554
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 173 LQILTLSQ-NRLNGQIP-VKIFSLNSLVHLDLSYN-------LLAGTIPVQVGNLRNLVG 223
L++L+++Q + LN V++F +L LDLS N L++ P++ L+ L
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFP--ALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 224 LDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSI-PDSIDKLSLLAFMALSNNKLTGN 282
+ + +G + LQ LDLS NSL + S D S L + LS L
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267
Query: 283 FPKGL-AKLQ--SLQYFLMDDNPMFIPLP 308
PKGL AKL L Y +D NP LP
Sbjct: 268 VPKGLPAKLSVLDLSYNRLDRNPSPDELP 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,936,764
Number of Sequences: 62578
Number of extensions: 472190
Number of successful extensions: 1091
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 251
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)