Query 044868
Match_columns 463
No_of_seqs 726 out of 4614
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-43 2.5E-48 397.1 30.3 336 43-400 28-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.7E-36 5.8E-41 337.8 23.7 306 90-407 261-590 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.5E-31 3.2E-36 262.1 2.2 332 87-431 123-488 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.4E-29 5.2E-34 246.7 4.1 253 148-402 151-406 (873)
5 KOG0444 Cytoskeletal regulator 99.9 2E-29 4.3E-34 248.8 -4.2 296 90-405 33-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 1.2E-27 2.6E-32 236.3 -1.8 261 108-381 93-380 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 4E-27 8.7E-32 222.1 -4.8 279 107-401 149-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 6.3E-27 1.4E-31 220.8 -10.3 263 120-401 47-310 (565)
9 PLN03210 Resistant to P. syrin 99.9 2.3E-21 4.9E-26 218.9 24.3 267 116-401 609-906 (1153)
10 PLN03210 Resistant to P. syrin 99.9 2.4E-21 5.1E-26 218.8 23.2 251 108-374 624-904 (1153)
11 PRK15370 E3 ubiquitin-protein 99.9 2.9E-21 6.3E-26 205.5 19.2 322 38-402 57-429 (754)
12 KOG4237 Extracellular matrix p 99.9 7.5E-24 1.6E-28 199.8 -2.2 278 148-427 69-389 (498)
13 PRK15387 E3 ubiquitin-protein 99.8 1.9E-20 4.2E-25 198.2 16.9 246 109-403 215-460 (788)
14 KOG0618 Serine/threonine phosp 99.8 4.5E-23 9.7E-28 212.6 -5.7 291 90-402 46-466 (1081)
15 cd00116 LRR_RI Leucine-rich re 99.8 6.3E-22 1.4E-26 194.0 1.8 258 139-400 18-319 (319)
16 KOG0618 Serine/threonine phosp 99.8 5.3E-22 1.1E-26 204.8 -3.8 245 148-401 243-489 (1081)
17 PRK15370 E3 ubiquitin-protein 99.8 1.9E-19 4.2E-24 191.7 13.7 247 90-377 179-429 (754)
18 PRK15387 E3 ubiquitin-protein 99.8 3.2E-19 6.8E-24 189.1 14.9 246 90-386 223-468 (788)
19 cd00116 LRR_RI Leucine-rich re 99.8 6.2E-21 1.3E-25 186.9 1.8 262 111-375 16-319 (319)
20 KOG0617 Ras suppressor protein 99.8 5.4E-21 1.2E-25 161.6 -5.6 180 218-403 32-214 (264)
21 KOG0617 Ras suppressor protein 99.7 3.1E-20 6.8E-25 156.9 -5.7 156 168-328 30-186 (264)
22 KOG4237 Extracellular matrix p 99.7 4.9E-19 1.1E-23 167.5 -3.8 249 122-378 71-361 (498)
23 PLN03150 hypothetical protein; 99.6 3.3E-15 7.1E-20 158.4 13.9 157 39-232 367-528 (623)
24 COG4886 Leucine-rich repeat (L 99.4 3.6E-13 7.9E-18 136.1 7.4 199 150-358 97-296 (394)
25 COG4886 Leucine-rich repeat (L 99.4 4.6E-13 1E-17 135.3 7.6 197 175-380 97-294 (394)
26 PLN03150 hypothetical protein; 99.4 2E-12 4.3E-17 137.3 12.3 114 292-406 419-533 (623)
27 KOG0532 Leucine-rich repeat (L 99.4 1.8E-14 3.8E-19 142.6 -3.3 196 169-374 73-271 (722)
28 KOG0532 Leucine-rich repeat (L 99.3 9.6E-14 2.1E-18 137.4 -4.2 192 148-350 77-271 (722)
29 KOG1909 Ran GTPase-activating 99.2 2.5E-12 5.4E-17 120.8 -0.0 83 148-232 32-133 (382)
30 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 7E-17 123.2 0.7 209 168-378 118-341 (505)
31 KOG1259 Nischarin, modulator o 99.2 9.7E-12 2.1E-16 114.5 2.4 132 243-380 284-416 (490)
32 KOG1909 Ran GTPase-activating 99.2 6.2E-12 1.3E-16 118.2 1.0 188 168-375 89-310 (382)
33 KOG3207 Beta-tubulin folding c 99.2 6.2E-12 1.3E-16 121.3 0.8 212 192-405 118-343 (505)
34 KOG1259 Nischarin, modulator o 99.1 9.9E-12 2.2E-16 114.5 0.9 130 218-353 283-413 (490)
35 PF14580 LRR_9: Leucine-rich r 99.1 1.8E-10 4E-15 101.4 5.6 82 170-256 18-101 (175)
36 PF14580 LRR_9: Leucine-rich r 99.1 2.4E-10 5.2E-15 100.7 6.1 127 191-322 15-147 (175)
37 KOG4658 Apoptotic ATPase [Sign 99.0 9.4E-11 2E-15 127.5 3.4 252 118-378 545-809 (889)
38 KOG0531 Protein phosphatase 1, 99.0 4.6E-11 9.9E-16 121.4 -2.2 175 167-352 91-268 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 1.1E-09 2.4E-14 119.2 5.4 262 117-389 522-796 (889)
40 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.3E-15 118.6 -2.3 199 168-378 69-270 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 2.9E-09 6.2E-14 77.1 3.3 61 315-375 1-61 (61)
42 KOG1859 Leucine-rich repeat pr 98.8 2.2E-10 4.7E-15 116.8 -3.7 199 194-404 83-295 (1096)
43 PF13855 LRR_8: Leucine rich r 98.7 7.8E-09 1.7E-13 74.8 2.8 61 291-351 1-61 (61)
44 KOG1859 Leucine-rich repeat pr 98.6 8.9E-10 1.9E-14 112.4 -7.6 126 245-376 166-292 (1096)
45 PF08263 LRRNT_2: Leucine rich 98.4 3.4E-07 7.3E-12 61.0 4.1 36 43-82 2-43 (43)
46 COG5238 RNA1 Ran GTPase-activa 98.4 9.1E-08 2E-12 87.5 1.5 185 117-305 29-256 (388)
47 KOG2982 Uncharacterized conser 98.4 6.7E-08 1.5E-12 89.5 0.2 186 194-379 70-265 (418)
48 KOG4579 Leucine-rich repeat (L 98.4 2E-08 4.2E-13 82.7 -3.2 133 269-406 29-164 (177)
49 KOG2982 Uncharacterized conser 98.3 2E-07 4.2E-12 86.5 2.3 114 114-230 41-157 (418)
50 KOG2120 SCF ubiquitin ligase, 98.3 2.1E-08 4.6E-13 92.7 -4.0 175 196-372 186-372 (419)
51 KOG2120 SCF ubiquitin ligase, 98.3 2.3E-08 5E-13 92.5 -4.7 193 172-366 186-390 (419)
52 COG5238 RNA1 Ran GTPase-activa 98.3 8.8E-07 1.9E-11 81.2 4.6 185 216-402 89-317 (388)
53 KOG4579 Leucine-rich repeat (L 98.2 5.2E-08 1.1E-12 80.3 -3.6 86 168-256 50-136 (177)
54 PRK15386 type III secretion pr 98.0 2.3E-05 5.1E-10 77.6 8.7 136 167-325 48-187 (426)
55 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.2E-10 54.0 3.6 36 340-376 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 53.4 3.6 34 173-207 3-36 (44)
57 KOG3665 ZYG-1-like serine/thre 97.9 7E-06 1.5E-10 87.7 3.0 136 146-283 122-266 (699)
58 PRK15386 type III secretion pr 97.7 8.4E-05 1.8E-09 73.7 7.6 137 139-302 47-188 (426)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.2E-10 85.3 1.8 139 117-261 121-268 (699)
60 KOG1644 U2-associated snRNP A' 97.6 9.5E-05 2E-09 65.3 5.3 84 288-371 61-148 (233)
61 KOG1644 U2-associated snRNP A' 97.6 0.00014 3.1E-09 64.2 5.8 39 241-279 62-100 (233)
62 KOG4341 F-box protein containi 97.5 4.6E-06 1E-10 80.9 -5.4 287 118-409 138-447 (483)
63 KOG2739 Leucine-rich acidic nu 97.4 9.6E-05 2.1E-09 67.9 2.3 93 160-256 32-129 (260)
64 KOG4341 F-box protein containi 97.3 1.5E-05 3.2E-10 77.5 -4.0 258 114-375 160-438 (483)
65 KOG2739 Leucine-rich acidic nu 97.0 0.00044 9.6E-09 63.6 2.3 39 265-303 63-103 (260)
66 PF13306 LRR_5: Leucine rich r 96.9 0.002 4.3E-08 53.8 6.1 7 340-346 104-110 (129)
67 PF13306 LRR_5: Leucine rich r 96.9 0.0021 4.5E-08 53.6 5.6 84 190-276 7-90 (129)
68 KOG1947 Leucine rich repeat pr 96.7 0.00027 5.8E-09 73.1 -1.5 127 148-274 190-328 (482)
69 KOG2123 Uncharacterized conser 96.4 0.00024 5.1E-09 65.8 -3.5 81 220-305 20-102 (388)
70 KOG1947 Leucine rich repeat pr 96.3 0.00071 1.5E-08 69.9 -1.5 133 168-300 185-330 (482)
71 KOG2123 Uncharacterized conser 96.2 0.00033 7.1E-09 64.9 -3.5 96 148-249 21-123 (388)
72 KOG4308 LRR-containing protein 95.9 8E-05 1.7E-09 76.4 -10.1 182 171-352 87-303 (478)
73 KOG4308 LRR-containing protein 95.8 6.5E-05 1.4E-09 77.0 -11.4 203 148-351 89-330 (478)
74 PF00560 LRR_1: Leucine Rich R 95.2 0.011 2.4E-07 32.8 1.3 19 341-360 2-20 (22)
75 PF00560 LRR_1: Leucine Rich R 94.7 0.013 2.7E-07 32.6 0.7 11 198-208 3-13 (22)
76 PF13504 LRR_7: Leucine rich r 92.3 0.098 2.1E-06 26.9 1.5 11 341-351 3-13 (17)
77 TIGR00864 PCC polycystin catio 91.2 0.1 2.2E-06 62.7 1.9 42 369-411 1-42 (2740)
78 KOG0473 Leucine-rich repeat pr 89.0 0.0071 1.5E-07 54.9 -7.8 87 166-255 37-123 (326)
79 KOG3763 mRNA export factor TAP 88.0 0.45 9.7E-06 48.7 3.2 110 338-451 217-337 (585)
80 smart00370 LRR Leucine-rich re 87.5 0.43 9.4E-06 27.3 1.8 13 172-184 3-15 (26)
81 smart00369 LRR_TYP Leucine-ric 87.5 0.43 9.4E-06 27.3 1.8 13 172-184 3-15 (26)
82 KOG0473 Leucine-rich repeat pr 86.6 0.015 3.3E-07 52.8 -7.1 82 218-302 41-122 (326)
83 smart00370 LRR Leucine-rich re 86.2 0.64 1.4E-05 26.6 2.0 13 340-352 3-15 (26)
84 smart00369 LRR_TYP Leucine-ric 86.2 0.64 1.4E-05 26.6 2.0 13 340-352 3-15 (26)
85 PF13516 LRR_6: Leucine Rich r 84.1 0.26 5.6E-06 27.7 -0.4 15 339-353 2-16 (24)
86 KOG3864 Uncharacterized conser 82.1 0.31 6.7E-06 43.6 -0.9 80 196-275 102-184 (221)
87 KOG3864 Uncharacterized conser 82.0 0.25 5.5E-06 44.1 -1.5 84 90-180 102-185 (221)
88 KOG4242 Predicted myosin-I-bin 76.0 7.3 0.00016 39.5 6.4 85 292-376 355-453 (553)
89 smart00364 LRR_BAC Leucine-ric 67.0 3.4 7.3E-05 23.9 1.1 13 340-352 3-15 (26)
90 smart00365 LRR_SD22 Leucine-ri 64.9 5.7 0.00012 23.0 1.8 14 363-376 2-15 (26)
91 smart00368 LRR_RI Leucine rich 58.8 7.9 0.00017 22.6 1.7 14 363-376 2-15 (28)
92 KOG3763 mRNA export factor TAP 43.6 12 0.00027 38.7 1.4 64 289-354 216-285 (585)
93 smart00367 LRR_CC Leucine-rich 36.7 23 0.00049 20.1 1.3 10 148-157 4-13 (26)
94 TIGR00864 PCC polycystin catio 34.8 54 0.0012 40.9 5.0 35 345-379 1-35 (2740)
95 KOG4242 Predicted myosin-I-bin 33.3 94 0.002 31.9 5.7 249 146-399 165-451 (553)
96 smart00082 LRRCT Leucine rich 21.7 31 0.00067 22.9 0.0 16 398-413 1-16 (51)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-43 Score=397.14 Aligned_cols=336 Identities=35% Similarity=0.516 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHhCCCC----CCCCCCCCCCCCCCCCccceEeCCCCCCcccEEEEECCCCCCCCCCccccccccccCCC
Q 044868 43 PSEAETLFKIMDSMSSD----QSWRVSYSNPCKPGSSWPGIECKQGNDGYLHVTRLDFGTRPNPTCKKTATFPYQIFSLS 118 (463)
Q Consensus 43 ~~~~~aLl~~~~~~~~~----~~W~~~~~~~C~~~~~w~gv~C~~~~~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~ 118 (463)
++|++||++||+++.++ .+|+. ..|||. |.||+|+.. ++|++|+|++. .+.|.+++.+..++
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~----w~gv~c~~~----~~v~~L~L~~~-----~i~~~~~~~~~~l~ 93 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNS-SADVCL----WQGITCNNS----SRVVSIDLSGK-----NISGKISSAIFRLP 93 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCc----CcceecCCC----CcEEEEEecCC-----CccccCChHHhCCC
Confidence 47999999999998644 46864 357886 999999854 49999999743 45677777888888
Q ss_pred CCCEEEcccCCCCCccccccccc-ccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCC
Q 044868 119 YLQSVFFFSCFTHTKTTLSVSAD-RLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSL 197 (463)
Q Consensus 119 ~L~~L~L~~~~~~~~~~ip~~~~-~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 197 (463)
+|++|++++|.+ .+.+|..+. .+++ |++|+|++| .+.+.+|. +.+++|++|+|++|.+++.+|..++++++|
T Consensus 94 ~L~~L~Ls~n~~--~~~ip~~~~~~l~~--L~~L~Ls~n-~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 94 YIQTINLSNNQL--SGPIPDDIFTTSSS--LRYLNLSNN-NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred CCCEEECCCCcc--CCcCChHHhccCCC--CCEEECcCC-ccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 888888888765 456776654 5665 777777777 66666553 345666666666666666666666666666
Q ss_pred cEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCC
Q 044868 198 VHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNN 277 (463)
Q Consensus 198 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 277 (463)
++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|++++.+|..++++++|++|++++|
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchh
Q 044868 278 KLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPV 357 (463)
Q Consensus 278 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 357 (463)
.+++.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.
T Consensus 247 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCC
Q 044868 358 VFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPG 400 (463)
Q Consensus 358 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~ 400 (463)
.+..+++|+.|++++|.+++.+|..+..++.+ +.|++++|.+
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L-~~L~Ls~n~l 368 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL-TVLDLSTNNL 368 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCC-cEEECCCCee
Confidence 66666666666666666666555555555555 5566665543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-36 Score=337.79 Aligned_cols=306 Identities=32% Similarity=0.450 Sum_probs=212.7
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
+++.|+++. +.+.|.+|..+.++++|++|++++|.+ .+.+|..+.++++ |++|++++| .+.+.+|..+..
T Consensus 261 ~L~~L~L~~-----n~l~~~~p~~l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~--L~~L~l~~n-~~~~~~~~~~~~ 330 (968)
T PLN00113 261 NLQYLFLYQ-----NKLSGPIPPSIFSLQKLISLDLSDNSL--SGEIPELVIQLQN--LEILHLFSN-NFTGKIPVALTS 330 (968)
T ss_pred CCCEEECcC-----CeeeccCchhHhhccCcCEEECcCCee--ccCCChhHcCCCC--CcEEECCCC-ccCCcCChhHhc
Confidence 456666653 335556666666666666666666643 4455555555555 666666666 555566666666
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhc------------------------CCCCCCCEEE
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQV------------------------GNLRNLVGLD 225 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l------------------------~~l~~L~~L~ 225 (463)
+++|++|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+ ..+++|+.|+
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 6666666666666655555555555566666665555555555444 4445555555
Q ss_pred cccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCC
Q 044868 226 LSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFI 305 (463)
Q Consensus 226 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 305 (463)
+++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+ ..++|++|++++|.+.+
T Consensus 411 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSG 489 (968)
T ss_pred CcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCC
Confidence 55555555555555555555555555555555555555555556666666665555555433 34677778888888888
Q ss_pred CCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchh
Q 044868 306 PLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSF 385 (463)
Q Consensus 306 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 385 (463)
.+|..+..+++|++|+|++|.+.+.+|..+..+++|++|+|++|++++.+|..+..+++|+.|+|++|+++|.+|..+..
T Consensus 490 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 569 (968)
T PLN00113 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN 569 (968)
T ss_pred ccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hhccCCeEeccCCCCCCCCccc
Q 044868 386 LKRLGRNLDLSGNPGLCLNPAE 407 (463)
Q Consensus 386 l~~L~~~L~L~~N~~~c~~~~~ 407 (463)
+..+ +.+++++|++.+..|..
T Consensus 570 l~~L-~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 570 VESL-VQVNISHNHLHGSLPST 590 (968)
T ss_pred Cccc-CEEeccCCcceeeCCCc
Confidence 8888 89999999988766543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-31 Score=262.12 Aligned_cols=332 Identities=22% Similarity=0.189 Sum_probs=235.6
Q ss_pred CcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccc-cccccCCCCccEEEccCCCCCCCCCch
Q 044868 87 GYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSV-SADRLYNSSLQQLSLRSNPALVGPIPP 165 (463)
Q Consensus 87 ~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~-~~~~l~~~~L~~L~Ls~n~~l~~~~p~ 165 (463)
..+|++.|+|..+- ....-.+++..++.||+|||+.|.+ ..+|. .+..-. ++++|+|++| .++..-..
T Consensus 123 ~sghl~~L~L~~N~-----I~sv~se~L~~l~alrslDLSrN~i---s~i~~~sfp~~~--ni~~L~La~N-~It~l~~~ 191 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNL-----ISSVTSEELSALPALRSLDLSRNLI---SEIPKPSFPAKV--NIKKLNLASN-RITTLETG 191 (873)
T ss_pred cccceeEEeeeccc-----cccccHHHHHhHhhhhhhhhhhchh---hcccCCCCCCCC--CceEEeeccc-cccccccc
Confidence 35799999996321 2222234566677778888877754 22222 122222 2777777776 56555555
Q ss_pred hcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCC------------------------CCCchhcCCCCCC
Q 044868 166 QISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLA------------------------GTIPVQVGNLRNL 221 (463)
Q Consensus 166 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------------------~~~p~~l~~l~~L 221 (463)
.|.++.+|.+|.|+.|+++..-+..|.++++|+.|+|..|++. ..-...|..+.++
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 6666666666666666666333334444666666666666554 2223345556677
Q ss_pred CEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCC
Q 044868 222 VGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDN 301 (463)
Q Consensus 222 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 301 (463)
++|+|..|+++..-..++.+++.|+.|++++|.|....++.+...++|++|+|+.|+++...+.++..+..|++|.|++|
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 77777777777555667777888888888888888777777778888888888888888777777888888888888888
Q ss_pred CCCCCCchhhhCCCCCCEEeccCCCCCCCCcc---ccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 302 PMFIPLPVEFGILVKLQELRLANSGYSGSIPP---SFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 302 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
.+...-...|..+++|++|||++|.+++.+.+ .|..+++|+.|++.+|++....-..|.+++.|++|||.+|.|...
T Consensus 352 si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 352 SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 88776667788888999999999998876543 567889999999999999855556889999999999999999988
Q ss_pred CCCCchhhhccCCeEeccCCCCCCCCcccccccccC------CccccCCCCCCCCCccc
Q 044868 379 VPFNSSFLKRLGRNLDLSGNPGLCLNPAEAYSVKIG------IGVSICGSNKNGSLIKP 431 (463)
Q Consensus 379 ~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~~~~~~------~~~~~C~~~~~~~~~~~ 431 (463)
-|..|..+ .| ++|.+..-.++|+|...|+.+++. .....|.-++-......
T Consensus 432 q~nAFe~m-~L-k~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~i 488 (873)
T KOG4194|consen 432 QPNAFEPM-EL-KELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQSI 488 (873)
T ss_pred cccccccc-hh-hhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCccccccee
Confidence 88888887 77 888888888999999999766655 33456665555444433
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=2.4e-29 Score=246.71 Aligned_cols=253 Identities=26% Similarity=0.230 Sum_probs=153.7
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|+.|||+.| .++..--..|..-.++++|+|++|+|+..--..|.++.+|..|.|+.|+++...+..|.++++|+.|+|.
T Consensus 151 lrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 455555544 3332222233333445555555555543333444445555555555555553333444555555555555
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL 307 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 307 (463)
.|++.-.--..|.++++|+.|.|..|.+...-...|..+.++++|+|+.|+++..--.++.+++.|+.|++++|.|....
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 55554222334555555555555555555444555666677777777777776554556667777777777777777777
Q ss_pred chhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCC---ch
Q 044868 308 PVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFN---SS 384 (463)
Q Consensus 308 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~---~~ 384 (463)
++.+...++|+.|+|++|+++...+..|..+..|++|+|++|.++..-...|..+++|+.|||++|.+++.+.+. +.
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 777777777777777777777666667777777777777777777444456667777888888888777666542 44
Q ss_pred hhhccCCeEeccCCCCCC
Q 044868 385 FLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 385 ~l~~L~~~L~L~~N~~~c 402 (463)
.+++| +.|++.||++..
T Consensus 390 gl~~L-rkL~l~gNqlk~ 406 (873)
T KOG4194|consen 390 GLPSL-RKLRLTGNQLKS 406 (873)
T ss_pred cchhh-hheeecCceeee
Confidence 56677 778888887543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2e-29 Score=248.77 Aligned_cols=296 Identities=32% Similarity=0.429 Sum_probs=173.8
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCC-CCCCchhcC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPAL-VGPIPPQIS 168 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l-~~~~p~~l~ 168 (463)
+++.|.|... ....+|..++.+.+|++|.+++|.. ..+-..+..++. |+.+.+..| ++ ..-||..+.
T Consensus 33 ~~~WLkLnrt------~L~~vPeEL~~lqkLEHLs~~HN~L---~~vhGELs~Lp~--LRsv~~R~N-~LKnsGiP~diF 100 (1255)
T KOG0444|consen 33 QMTWLKLNRT------KLEQVPEELSRLQKLEHLSMAHNQL---ISVHGELSDLPR--LRSVIVRDN-NLKNSGIPTDIF 100 (1255)
T ss_pred heeEEEechh------hhhhChHHHHHHhhhhhhhhhhhhh---Hhhhhhhccchh--hHHHhhhcc-ccccCCCCchhc
Confidence 5666666321 2346777788888888887777653 233344445554 666666666 33 334566666
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCc-hhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCE
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIP-VQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQK 247 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 247 (463)
.+..|.+|||++|++. +.|..+..-+++-.|+||+|+|. .+| .-+.++..|-.|||++|++. .+|+-+..+..|++
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence 6666666666666665 56666666666666666666665 333 33455566666666666655 45555555555555
Q ss_pred EeccCCCCC-------------------------CCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCC
Q 044868 248 LDLSSNSLT-------------------------GSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNP 302 (463)
Q Consensus 248 L~L~~n~l~-------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 302 (463)
|+|++|.+. ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence 555555432 235566666667777777777776 666777777777777777776
Q ss_pred CCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCC-C-----------------------Cchhh
Q 044868 303 MFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLT-G-----------------------EIPVV 358 (463)
Q Consensus 303 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~-----------------------~~p~~ 358 (463)
++.. ....+...+|++|+|+.|+++ .+|.++..+++|+.|.+.+|+++ . .+|+.
T Consensus 257 iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg 334 (1255)
T KOG0444|consen 257 ITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG 334 (1255)
T ss_pred eeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence 6432 112233344555555555554 44444444444444444444443 1 45555
Q ss_pred hCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 359 FGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 359 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
+..+.+|+.|.|+.|++- .+|+.+-.++.+ ..||+..||-+.-.|
T Consensus 335 lcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l-~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL-KVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhHHHHHhccccccee-echhhhhhcCCc-ceeeccCCcCccCCC
Confidence 555666666666666665 456666666677 777777777655443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=1.2e-27 Score=236.29 Aligned_cols=261 Identities=29% Similarity=0.389 Sum_probs=212.0
Q ss_pred ccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCch-hcCCCCCCcEEEeecCCCCCC
Q 044868 108 ATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPP-QISSLKFLQILTLSQNRLNGQ 186 (463)
Q Consensus 108 g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~ 186 (463)
.-||+.++++..|..|||+.|.. ...|..+..-++ +-+|+||+| ++. .||. -+-+++.|-.|||++|++. .
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL---~EvP~~LE~AKn--~iVLNLS~N-~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQL---REVPTNLEYAKN--SIVLNLSYN-NIE-TIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred CCCCchhcccccceeeecchhhh---hhcchhhhhhcC--cEEEEcccC-ccc-cCCchHHHhhHhHhhhccccchhh-h
Confidence 34777888888888888888764 566777766666 777777777 443 4443 3466777777777777776 5
Q ss_pred CccccCCCCCCcEEEcccCCCC-------------------------CCCchhcCCCCCCCEEEcccCcCCCCCchhhcC
Q 044868 187 IPVKIFSLNSLVHLDLSYNLLA-------------------------GTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQ 241 (463)
Q Consensus 187 ~p~~l~~l~~L~~L~Ls~n~l~-------------------------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 241 (463)
+|+.+..+..|++|+|++|.+. ..+|.++..+.+|..+|++.|.+. .+|+.+.+
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh
Confidence 6666666777777777766442 246777788888999999999988 78999999
Q ss_pred CCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCC-CCchhhhCCCCCCEE
Q 044868 242 LGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFI-PLPVEFGILVKLQEL 320 (463)
Q Consensus 242 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L 320 (463)
+++|+.|+|++|.++ .+....+...+|++|+++.|+++ .+|+.+.++++|+.|.+.+|++.- .+|+.++.+.+|+.+
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 999999999999988 55556777888999999999998 899999999999999999999864 478899999999999
Q ss_pred eccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCC
Q 044868 321 RLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPF 381 (463)
Q Consensus 321 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 381 (463)
..++|.+. .+|+.+..|..|+.|.|++|++. ++|+.+.-++.|+.||+..|.---..|.
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 99999997 89999999999999999999999 8999999999999999999975544443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=4e-27 Score=222.13 Aligned_cols=279 Identities=28% Similarity=0.415 Sum_probs=192.8
Q ss_pred cccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCC
Q 044868 107 TATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQ 186 (463)
Q Consensus 107 ~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 186 (463)
..++|++++++.+|..+++.+|.. ..+|+..-+++. |++||...| ..+.+|+.++.+.+|+-|+|++|++. .
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l---~~l~~~~i~m~~--L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~-~ 220 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKL---KALPENHIAMKR--LKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIR-F 220 (565)
T ss_pred cccCchHHHHHHHHHHhhccccch---hhCCHHHHHHHH--HHhcccchh--hhhcCChhhcchhhhHHHHhhhcccc-c
Confidence 456778888888888888888764 455666555777 888888777 45678888888888888888888887 6
Q ss_pred CccccCCCCCCcEEEcccCCCCCCCchhcC-CCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhc
Q 044868 187 IPVKIFSLNSLVHLDLSYNLLAGTIPVQVG-NLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDK 265 (463)
Q Consensus 187 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 265 (463)
+| +|.++..|++|+++.|++. .+|.+.. +++++.+||++.|++. ..|..+.-+.+|++||+++|.++ .+|.++++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 66 6777778888888777777 5665554 7777888888888777 67777777777888888887777 45666777
Q ss_pred CCCCCEEEeeCCCCCC----------------------------------------------------------------
Q 044868 266 LSLLAFMALSNNKLTG---------------------------------------------------------------- 281 (463)
Q Consensus 266 l~~L~~L~L~~n~l~~---------------------------------------------------------------- 281 (463)
+ .|+.|.+.+|.+..
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 66666666665410
Q ss_pred CCchhhhCC---CCCcEeecCCCCC-----------------------CCCCchhhhCCCCCCEEeccCCCCCCCCcccc
Q 044868 282 NFPKGLAKL---QSLQYFLMDDNPM-----------------------FIPLPVEFGILVKLQELRLANSGYSGSIPPSF 335 (463)
Q Consensus 282 ~~p~~l~~l---~~L~~L~L~~n~l-----------------------~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 335 (463)
.+|+..... .-....++++|++ .+.+|..+..+++|..|+|++|-+. .+|..+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~ 454 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEM 454 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhh
Confidence 111111000 0022233333332 2344555666677777777777666 566666
Q ss_pred CCCCcccEEEcccccCC-----------------------CCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCe
Q 044868 336 SQLNNLSTLSLQNNRLT-----------------------GEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRN 392 (463)
Q Consensus 336 ~~l~~L~~L~Ls~N~l~-----------------------~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~ 392 (463)
+.+..|+.||+++|++. ...|+.+.++.+|+.|||.+|.+. .+|..++++.++ +.
T Consensus 455 ~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL-~h 532 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNL-RH 532 (565)
T ss_pred hhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccce-eE
Confidence 77767777777766543 233444777888999999999888 567788888888 89
Q ss_pred EeccCCCCC
Q 044868 393 LDLSGNPGL 401 (463)
Q Consensus 393 L~L~~N~~~ 401 (463)
|+++|||+.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 999999886
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=6.3e-27 Score=220.82 Aligned_cols=263 Identities=32% Similarity=0.462 Sum_probs=220.9
Q ss_pred CCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcE
Q 044868 120 LQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVH 199 (463)
Q Consensus 120 L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 199 (463)
|+.+++++|.. ..+-..+.++.. |.+|++.+| .++ ..|++++.+..++.|+.++|+++ .+|..++.+.+|++
T Consensus 47 l~~lils~N~l---~~l~~dl~nL~~--l~vl~~~~n-~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 47 LQKLILSHNDL---EVLREDLKNLAC--LTVLNVHDN-KLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred hhhhhhccCch---hhccHhhhcccc--eeEEEeccc-hhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 44555665542 445566777777 889999888 554 66788999999999999999998 88999999999999
Q ss_pred EEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCC
Q 044868 200 LDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKL 279 (463)
Q Consensus 200 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 279 (463)
|+.++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|++....|..+ +++.|++||...|.+
T Consensus 119 l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLL 195 (565)
T ss_pred hhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhh
Confidence 999999988 78888899999999999999998 788888899999999999999985555544 499999999999988
Q ss_pred CCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccC-CCCcccEEEcccccCCCCchhh
Q 044868 280 TGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFS-QLNNLSTLSLQNNRLTGEIPVV 358 (463)
Q Consensus 280 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~ 358 (463)
+ .+|..++.+.+|+.|++..|++.. .| +|.++..|++|+++.|++. .+|.... +++++..|||.+|+++ +.|+.
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence 7 788889999999999999999854 44 7888999999999999987 6776654 8899999999999999 88998
Q ss_pred hCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCC
Q 044868 359 FGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGL 401 (463)
Q Consensus 359 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~ 401 (463)
+..+.+|++||+++|.|++ .|.+++++ .+ +.|-+.|||+.
T Consensus 271 ~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL-~~L~leGNPlr 310 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDISS-LPYSLGNL-HL-KFLALEGNPLR 310 (565)
T ss_pred HHHhhhhhhhcccCCcccc-CCcccccc-ee-eehhhcCCchH
Confidence 8889999999999999995 56678888 77 89999999953
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.3e-21 Score=218.94 Aligned_cols=267 Identities=25% Similarity=0.290 Sum_probs=156.6
Q ss_pred CCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCC
Q 044868 116 SLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLN 195 (463)
Q Consensus 116 ~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 195 (463)
...+|++|++.+|.. ..++..+..+++ |++|+|+++ ...+.+|. ++.+++|++|+|++|.....+|..+.+++
T Consensus 609 ~~~~L~~L~L~~s~l---~~L~~~~~~l~~--Lk~L~Ls~~-~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 609 RPENLVKLQMQGSKL---EKLWDGVHSLTG--LRNIDLRGS-KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CccCCcEEECcCccc---cccccccccCCC--CCEEECCCC-CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC
Confidence 345566666665543 334555555555 666666665 33444553 55666666666666655455666666666
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhh------------
Q 044868 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI------------ 263 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l------------ 263 (463)
+|++|++++|...+.+|..+ ++++|++|++++|...+.+|.. .++|++|++++|.+. .+|..+
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCE 756 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccc
Confidence 66666666654444555543 4566666666665544344432 235556666655544 233221
Q ss_pred ------------------hcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCC
Q 044868 264 ------------------DKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANS 325 (463)
Q Consensus 264 ------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 325 (463)
...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|++|++++|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC 835 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence 112456666666666555666667777777777777665555555544 5666777777766
Q ss_pred CCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCC-CCCccCCCCchhhhccCCeEeccCCCCC
Q 044868 326 GYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRN-FLDGVVPFNSSFLKRLGRNLDLSGNPGL 401 (463)
Q Consensus 326 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~~L~L~~N~~~ 401 (463)
.....+|.. .++|++|+|++|.++ .+|.++..+++|++|++++| ++. .+|..+..++.+ +.+++++|+-+
T Consensus 836 ~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L-~~L~l~~C~~L 906 (1153)
T PLN03210 836 SRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL-ETVDFSDCGAL 906 (1153)
T ss_pred Ccccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC-CeeecCCCccc
Confidence 554444432 246777777777776 56777777777777777774 444 455556666677 67777776533
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.4e-21 Score=218.82 Aligned_cols=251 Identities=22% Similarity=0.259 Sum_probs=200.9
Q ss_pred ccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCC
Q 044868 108 ATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQI 187 (463)
Q Consensus 108 g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 187 (463)
..++..+..+++|+.|+++++.. ...+| .+..+++ |++|+|++| .....+|..++++++|+.|++++|.....+
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~--l~~ip-~ls~l~~--Le~L~L~~c-~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKN--LKEIP-DLSMATN--LETLKLSDC-SSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccccccccCCCCCEEECCCCCC--cCcCC-ccccCCc--ccEEEecCC-CCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 34667778899999999988753 35565 4667777 999999998 666788989999999999999988666678
Q ss_pred ccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhh----------------------------
Q 044868 188 PVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTI---------------------------- 239 (463)
Q Consensus 188 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---------------------------- 239 (463)
|..+ ++++|++|++++|...+.+|.. ..+|++|++++|.+. .+|..+
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchh
Confidence 8655 7888999999888765566543 356778888887765 344321
Q ss_pred --cCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCC
Q 044868 240 --GQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKL 317 (463)
Q Consensus 240 --~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 317 (463)
...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|++|++++|.....+|.. .++|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cccc
Confidence 123578889999998888899999999999999999986656788766 7899999999998776666643 4689
Q ss_pred CEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCC
Q 044868 318 QELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNF 374 (463)
Q Consensus 318 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 374 (463)
++|+|++|.++ .+|.++..+++|++|++++|+-...+|..+..+++|+.+++++|.
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99999999998 789999999999999999955444688888899999999999985
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.87 E-value=2.9e-21 Score=205.51 Aligned_cols=322 Identities=20% Similarity=0.277 Sum_probs=230.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCC-------CCCCCCCCCCCCCCC------------CccceEeCCCCCCcccEEEEECCC
Q 044868 38 PNGMLPSEAETLFKIMDSMSSD-------QSWRVSYSNPCKPGS------------SWPGIECKQGNDGYLHVTRLDFGT 98 (463)
Q Consensus 38 ~~~~~~~~~~aLl~~~~~~~~~-------~~W~~~~~~~C~~~~------------~w~gv~C~~~~~~~~~v~~l~L~~ 98 (463)
+.++.++|.+.+++..+.+..+ .+|.+. .|+|.-+. .=.-|.|... .||.+..-+
T Consensus 57 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~-----~vt~l~~~g 130 (754)
T PRK15370 57 PETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCILSENSQEILSIVFNTEGYTVEGGGK-----SVTYTRVTE 130 (754)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-CcccccCCcchhhheeeecCCceEEecCCC-----ccccccccc
Confidence 4567788999999999888654 248754 58885221 2234788654 455555421
Q ss_pred CCC------CC----CCc-----ccccc--------ccc-----cCCCCCCEEEcccCCCCCcccccccccccCCCCccE
Q 044868 99 RPN------PT----CKK-----TATFP--------YQI-----FSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQ 150 (463)
Q Consensus 99 ~~~------~~----~~~-----~g~l~--------~~l-----~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~ 150 (463)
... +. +.. ...-+ ..+ +-..+...|+++++.+ ..+|..+. + +|++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~L---tsLP~~Ip--~--~L~~ 203 (754)
T PRK15370 131 SEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGL---TTIPACIP--E--QITT 203 (754)
T ss_pred ccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCc---CcCCcccc--c--CCcE
Confidence 110 00 000 00000 011 1124577899988654 35665543 2 3999
Q ss_pred EEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCc
Q 044868 151 LSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNS 230 (463)
Q Consensus 151 L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 230 (463)
|+|++| .+. .+|..+. ++|++|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. .+|+.|++++|+
T Consensus 204 L~Ls~N-~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 204 LILDNN-ELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred EEecCC-CCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCc
Confidence 999999 777 5676554 58999999999998 6776654 47999999999998 7787664 589999999999
Q ss_pred CCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchh
Q 044868 231 LTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVE 310 (463)
Q Consensus 231 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~ 310 (463)
++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..
T Consensus 274 L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~ 343 (754)
T PRK15370 274 IS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPAS 343 (754)
T ss_pred cC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChh
Confidence 98 5777654 589999999999984 565443 47899999999998 4565443 689999999999876 5655
Q ss_pred hhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhh----
Q 044868 311 FGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFL---- 386 (463)
Q Consensus 311 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l---- 386 (463)
+. ++|+.|++++|+++ .+|..+. ++|++|+|++|+++ .+|..+. ..|+.|++++|+++ .+|..+..+
T Consensus 344 l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 344 LP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEG 414 (754)
T ss_pred hc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcC
Confidence 43 79999999999998 5676553 68999999999999 5676654 37999999999998 556554443
Q ss_pred hccCCeEeccCCCCCC
Q 044868 387 KRLGRNLDLSGNPGLC 402 (463)
Q Consensus 387 ~~L~~~L~L~~N~~~c 402 (463)
+.+ ..+++.+||+..
T Consensus 415 ~~l-~~L~L~~Npls~ 429 (754)
T PRK15370 415 PQP-TRIIVEYNPFSE 429 (754)
T ss_pred CCc-cEEEeeCCCccH
Confidence 556 789999999864
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=7.5e-24 Score=199.82 Aligned_cols=278 Identities=23% Similarity=0.204 Sum_probs=202.2
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEccc-CCCCCCCchhcCCCCCCCEEEc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSY-NLLAGTIPVQVGNLRNLVGLDL 226 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L 226 (463)
-..++|..| .++..-|.+|+.+++|+.|||++|+|+..-|+.|.++++|..|-+.+ |+|+..--..|+++..|+.|.+
T Consensus 69 tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 556677777 66666666778888888888888888777777777777776665555 7777444456777778888888
Q ss_pred ccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCC------------CCchhhhCCC---
Q 044868 227 SYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTG------------NFPKGLAKLQ--- 291 (463)
Q Consensus 227 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~--- 291 (463)
.-|++.-...+.|..+++|..|.+.+|.+...--..+..+..++++.+..|.+.. ..|..++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 7777776667777778888888887777763333367777777777777766310 1111111111
Q ss_pred -------------------CCcEe---ecCCCCCCCCCc-hhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEccc
Q 044868 292 -------------------SLQYF---LMDDNPMFIPLP-VEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQN 348 (463)
Q Consensus 292 -------------------~L~~L---~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 348 (463)
.++.+ ..+.+...+.-| ..|..+++|++|+|++|+++++-+.+|.....++.|.|..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111 112222333333 3578999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcccccccc----cCCccccCCCCC
Q 044868 349 NRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAYSVK----IGIGVSICGSNK 424 (463)
Q Consensus 349 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~~~~----~~~~~~~C~~~~ 424 (463)
|++...-...|.++..|+.|+|.+|+|+...|..|..+..+ .+|++-.|||.|.|...|+..+ -..+...|.+..
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l-~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~ 386 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL-STLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPG 386 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee-eeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCc
Confidence 99986666678899999999999999999999999999999 8999999999999999884333 346667777544
Q ss_pred CCC
Q 044868 425 NGS 427 (463)
Q Consensus 425 ~~~ 427 (463)
...
T Consensus 387 ~~~ 389 (498)
T KOG4237|consen 387 FVR 389 (498)
T ss_pred hhc
Confidence 443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=1.9e-20 Score=198.23 Aligned_cols=246 Identities=26% Similarity=0.300 Sum_probs=177.7
Q ss_pred cccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCc
Q 044868 109 TFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIP 188 (463)
Q Consensus 109 ~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 188 (463)
.+|+.+. ++|+.|++.+|.+ ..+|.. .+ +|++|++++| .++ .+|.. .++|+.|++++|.++ .+|
T Consensus 215 sLP~~l~--~~L~~L~L~~N~L---t~LP~l---p~--~Lk~LdLs~N-~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp 278 (788)
T PRK15387 215 TLPDCLP--AHITTLVIPDNNL---TSLPAL---PP--ELRTLEVSGN-QLT-SLPVL---PPGLLELSIFSNPLT-HLP 278 (788)
T ss_pred cCCcchh--cCCCEEEccCCcC---CCCCCC---CC--CCcEEEecCC-ccC-cccCc---ccccceeeccCCchh-hhh
Confidence 5777665 4789999998865 345542 23 3999999998 776 34542 467888999999887 555
Q ss_pred cccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCC
Q 044868 189 VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSL 268 (463)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 268 (463)
.. ..+|+.|++++|+++ .+|.. .++|++|++++|++++ +|.. ..+|+.|++++|++++ +|.. ..+
T Consensus 279 ~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~ 343 (788)
T PRK15387 279 AL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSG 343 (788)
T ss_pred hc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccc
Confidence 43 356888899999887 55642 4678999999998884 4542 2467788888888874 5542 257
Q ss_pred CCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEccc
Q 044868 269 LAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQN 348 (463)
Q Consensus 269 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 348 (463)
|++|++++|+++ .+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+++ +|.. .++|+.|++++
T Consensus 344 Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 344 LQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSG 411 (788)
T ss_pred cceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccC
Confidence 888999999888 45542 3567888888888875 4542 3578888998888884 5543 25788889999
Q ss_pred ccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCC
Q 044868 349 NRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCL 403 (463)
Q Consensus 349 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~ 403 (463)
|+++ .+|... .+|+.|++++|+|+ .+|..+..++.+ +.|++++|++...
T Consensus 412 N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L-~~LdLs~N~Ls~~ 460 (788)
T PRK15387 412 NRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLSER 460 (788)
T ss_pred CcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCC-CeEECCCCCCCch
Confidence 8888 466532 46788888888888 677777788888 8889988887643
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=4.5e-23 Score=212.61 Aligned_cols=291 Identities=30% Similarity=0.387 Sum_probs=152.9
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
++.+||++.+ ..+.+|..+..+.+|+.|+++.|.+ ..+|....++.+ |++|.|.+| . ....|..+..
T Consensus 46 ~L~~l~lsnn------~~~~fp~~it~l~~L~~ln~s~n~i---~~vp~s~~~~~~--l~~lnL~~n-~-l~~lP~~~~~ 112 (1081)
T KOG0618|consen 46 KLKSLDLSNN------QISSFPIQITLLSHLRQLNLSRNYI---RSVPSSCSNMRN--LQYLNLKNN-R-LQSLPASISE 112 (1081)
T ss_pred eeEEeecccc------ccccCCchhhhHHHHhhcccchhhH---hhCchhhhhhhc--chhheeccc-h-hhcCchhHHh
Confidence 5777888643 4566677777777777777777653 456666666666 777777666 2 3456666777
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCC----------------------------------------CCc-EEEcccCCCC
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLN----------------------------------------SLV-HLDLSYNLLA 208 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~----------------------------------------~L~-~L~Ls~n~l~ 208 (463)
+++|++|+++.|.+. .+|.-+..++ .|+ .|+|.+|.+.
T Consensus 113 lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~ 191 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME 191 (1081)
T ss_pred hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh
Confidence 777777777766654 3332221111 122 2555555443
Q ss_pred CCCchhc---------------------------------------CCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEe
Q 044868 209 GTIPVQV---------------------------------------GNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 209 ~~~p~~l---------------------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 249 (463)
...-..+ ..-.+|+++++++|+++ .+|++++.+.+|+.++
T Consensus 192 ~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~ 270 (1081)
T KOG0618|consen 192 VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALN 270 (1081)
T ss_pred hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEec
Confidence 1000000 00124555555555555 4556666666666666
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCC--------------------------
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPM-------------------------- 303 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-------------------------- 303 (463)
..+|+++ .+|..+...++|+.|.+..|.++ -+|.....++.|++|+|..|++
T Consensus 271 ~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~ 348 (1081)
T KOG0618|consen 271 ANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS 348 (1081)
T ss_pred ccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence 6666664 34443433333333333333333 3344444455555555555554
Q ss_pred -----------------------CCCCchhhhCCCCCCEEeccCCCCCCCCcc-ccCCCCcccEEEcccccCCCCchhhh
Q 044868 304 -----------------------FIPLPVEFGILVKLQELRLANSGYSGSIPP-SFSQLNNLSTLSLQNNRLTGEIPVVF 359 (463)
Q Consensus 304 -----------------------~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l 359 (463)
+...-..+.+..+|+.|+|++|++. .+|+ .+.+++.|+.|+||+|+++ .+|..+
T Consensus 349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv 426 (1081)
T KOG0618|consen 349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTV 426 (1081)
T ss_pred ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHH
Confidence 3333333444445555555555554 2332 3445555555555555555 455555
Q ss_pred CCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCC
Q 044868 360 GSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 360 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c 402 (463)
..+..|++|...+|++. ..| .+..++.+ +.+|++.|.+.-
T Consensus 427 a~~~~L~tL~ahsN~l~-~fP-e~~~l~qL-~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLL-SFP-ELAQLPQL-KVLDLSCNNLSE 466 (1081)
T ss_pred HhhhhhHHHhhcCCcee-ech-hhhhcCcc-eEEecccchhhh
Confidence 55555555555555555 233 44555566 666666665443
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=6.3e-22 Score=193.96 Aligned_cols=258 Identities=22% Similarity=0.212 Sum_probs=156.3
Q ss_pred cccccCCCCccEEEccCCCCCCC----CCchhcCCCCCCcEEEeecCCCCC------CCccccCCCCCCcEEEcccCCCC
Q 044868 139 SADRLYNSSLQQLSLRSNPALVG----PIPPQISSLKFLQILTLSQNRLNG------QIPVKIFSLNSLVHLDLSYNLLA 208 (463)
Q Consensus 139 ~~~~l~~~~L~~L~Ls~n~~l~~----~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~ 208 (463)
.+..+.. |++|+++++ .++. .++..+...++|++|+++++.+.+ .++..+.++++|++|++++|.+.
T Consensus 18 ~~~~l~~--L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 18 LLPKLLC--LQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHhh--ccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 3334444 666666655 4432 134445555666666666665541 12334555667777777777766
Q ss_pred CCCchhcCCCCC---CCEEEcccCcCCC----CCchhhcCC-CCcCEEeccCCCCCCC----CchhhhcCCCCCEEEeeC
Q 044868 209 GTIPVQVGNLRN---LVGLDLSYNSLTG----SIPSTIGQL-GMLQKLDLSSNSLTGS----IPDSIDKLSLLAFMALSN 276 (463)
Q Consensus 209 ~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~ 276 (463)
+..+..+..+.+ |++|++++|++++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 544544444433 7777777777662 223344555 6777777777777642 233455566777788877
Q ss_pred CCCCCC----CchhhhCCCCCcEeecCCCCCCCCC----chhhhCCCCCCEEeccCCCCCCCCccccC-----CCCcccE
Q 044868 277 NKLTGN----FPKGLAKLQSLQYFLMDDNPMFIPL----PVEFGILVKLQELRLANSGYSGSIPPSFS-----QLNNLST 343 (463)
Q Consensus 277 n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~ 343 (463)
|.+++. ++..+..+++|++|++++|.+.+.. ...+..+++|++|++++|.+++.....+. ..+.|++
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 777642 2334455667888888888775442 23345667788888888887753222221 2468888
Q ss_pred EEcccccCCC----CchhhhCCCCCCCeEEccCCCCCccC----CCCchhh-hccCCeEeccCCCC
Q 044868 344 LSLQNNRLTG----EIPVVFGSLSHIYHLNLSRNFLDGVV----PFNSSFL-KRLGRNLDLSGNPG 400 (463)
Q Consensus 344 L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~----p~~~~~l-~~L~~~L~L~~N~~ 400 (463)
|++++|.+++ .+...+..+++|+++++++|.++... ...+... +.+ +++++.+|||
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 319 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL-ESLWVKDDSF 319 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch-hhcccCCCCC
Confidence 8888888862 23445666788888999988888542 2222223 455 7888888875
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=5.3e-22 Score=204.77 Aligned_cols=245 Identities=31% Similarity=0.403 Sum_probs=146.3
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++++++.| .++ .+|+.++.+.+|+.++..+|+++ .+|..+...++|+.|++.+|.+. .+|.....++.|++|+|.
T Consensus 243 l~~~dis~n-~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 243 LQYLDISHN-NLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ceeeecchh-hhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 444444444 333 22344444444444444444443 44444444444444444444444 344444444455555555
Q ss_pred cCcCCCCCchhh-cCCC-CcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCC
Q 044868 228 YNSLTGSIPSTI-GQLG-MLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFI 305 (463)
Q Consensus 228 ~n~l~~~~p~~l-~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 305 (463)
.|++. .+|+.+ .... .|+.|+.+.|.+.......=..++.|+.|.+.+|.++...-+.+.+..+|+.|+|++|++..
T Consensus 319 ~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 54444 222211 1111 13333333333331111111123457777888888887766678888888888888888866
Q ss_pred CCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchh
Q 044868 306 PLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSF 385 (463)
Q Consensus 306 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 385 (463)
.....+.++..|+.|+|++|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++...-.....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 66666788888888888888888 67788888888888888888887 667 6778888888888888887543222222
Q ss_pred hhccCCeEeccCCCCC
Q 044868 386 LKRLGRNLDLSGNPGL 401 (463)
Q Consensus 386 l~~L~~~L~L~~N~~~ 401 (463)
.+.| ++||++||.+.
T Consensus 475 ~p~L-kyLdlSGN~~l 489 (1081)
T KOG0618|consen 475 SPNL-KYLDLSGNTRL 489 (1081)
T ss_pred Cccc-ceeeccCCccc
Confidence 2677 88888888864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.9e-19 Score=191.66 Aligned_cols=247 Identities=23% Similarity=0.345 Sum_probs=192.3
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
..+.++++... ++ .+|..+. ++|+.|++++|.+ ..+|..+. .+ |++|++++| .+. .+|..+.
T Consensus 179 ~~~~L~L~~~~-----Lt-sLP~~Ip--~~L~~L~Ls~N~L---tsLP~~l~--~n--L~~L~Ls~N-~Lt-sLP~~l~- 240 (754)
T PRK15370 179 NKTELRLKILG-----LT-TIPACIP--EQITTLILDNNEL---KSLPENLQ--GN--IKTLYANSN-QLT-SIPATLP- 240 (754)
T ss_pred CceEEEeCCCC-----cC-cCCcccc--cCCcEEEecCCCC---CcCChhhc--cC--CCEEECCCC-ccc-cCChhhh-
Confidence 46778886431 22 3555443 4799999999875 35776554 34 999999999 776 5676553
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEe
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 249 (463)
++|+.|+|++|.+. .+|..+. .+|++|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ++|+.|+
T Consensus 241 -~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 241 -DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLN 310 (754)
T ss_pred -ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHH
Confidence 57999999999998 7887764 58999999999998 6787664 58999999999998 4665443 4799999
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
+++|.++. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++.. +|..+ .++|++|++++|.++
T Consensus 311 Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt- 380 (754)
T PRK15370 311 VQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALT- 380 (754)
T ss_pred hcCCcccc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCC-
Confidence 99999984 56544 3689999999999984 776664 699999999999974 56555 368999999999999
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhh----hCCCCCCCeEEccCCCCCc
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVV----FGSLSHIYHLNLSRNFLDG 377 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~ 377 (463)
.+|..+. ..|+.|++++|+++ .+|.. ...++.+..+++.+|.++.
T Consensus 381 ~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 381 NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 5666554 47999999999998 55544 4456889999999999973
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=3.2e-19 Score=189.07 Aligned_cols=246 Identities=29% Similarity=0.287 Sum_probs=189.5
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
+++.|+++.+. + ..+|. ..++|++|++++|.+. .+|.. .+ +|++|++++| .+. .+|..
T Consensus 223 ~L~~L~L~~N~-----L-t~LP~---lp~~Lk~LdLs~N~Lt---sLP~l---p~--sL~~L~Ls~N-~L~-~Lp~l--- 280 (788)
T PRK15387 223 HITTLVIPDNN-----L-TSLPA---LPPELRTLEVSGNQLT---SLPVL---PP--GLLELSIFSN-PLT-HLPAL--- 280 (788)
T ss_pred CCCEEEccCCc-----C-CCCCC---CCCCCcEEEecCCccC---cccCc---cc--ccceeeccCC-chh-hhhhc---
Confidence 57778876432 2 23554 2578999999998763 45532 23 3999999999 665 45542
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEe
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 249 (463)
.++|+.|++++|+++ .+|.. .++|++|++++|++++ +|.. ..+|+.|++++|+++ .+|.. ..+|++|+
T Consensus 281 p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~Ld 348 (788)
T PRK15387 281 PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELS 348 (788)
T ss_pred hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEe
Confidence 367889999999998 56653 4789999999999984 5542 246889999999998 46642 25899999
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
+++|++++ +|.. ..+|+.|++++|.++ .+|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|+++
T Consensus 349 LS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls- 415 (788)
T PRK15387 349 VSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT- 415 (788)
T ss_pred cCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-
Confidence 99999994 5653 457889999999998 46653 3579999999999975 4432 368999999999998
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhh
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFL 386 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 386 (463)
.+|.. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+|++..+..+..+
T Consensus 416 sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 416 SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 46654 357899999999999 789999999999999999999999877655443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=6.2e-21 Score=186.94 Aligned_cols=262 Identities=21% Similarity=0.211 Sum_probs=191.1
Q ss_pred cccccCCCCCCEEEcccCCCCCc--ccccccccccCCCCccEEEccCCCCCCC------CCchhcCCCCCCcEEEeecCC
Q 044868 111 PYQIFSLSYLQSVFFFSCFTHTK--TTLSVSADRLYNSSLQQLSLRSNPALVG------PIPPQISSLKFLQILTLSQNR 182 (463)
Q Consensus 111 ~~~l~~l~~L~~L~L~~~~~~~~--~~ip~~~~~l~~~~L~~L~Ls~n~~l~~------~~p~~l~~l~~L~~L~L~~n~ 182 (463)
...+..+++|++|++++|..... ..++..+...+. |++|+++++ .+.+ .++..+..+++|+.|++++|.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~--l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPS--LKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCC--ceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 34445567789999988865322 224555556665 999999888 5552 234567778899999999999
Q ss_pred CCCCCccccCCCCC---CcEEEcccCCCCC----CCchhcCCC-CCCCEEEcccCcCCCC----CchhhcCCCCcCEEec
Q 044868 183 LNGQIPVKIFSLNS---LVHLDLSYNLLAG----TIPVQVGNL-RNLVGLDLSYNSLTGS----IPSTIGQLGMLQKLDL 250 (463)
Q Consensus 183 l~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L 250 (463)
+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|++|++++|.+++. ++..+..+++|++|++
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 87666655555544 9999999999873 233455667 8999999999998843 3445667789999999
Q ss_pred cCCCCCCC----CchhhhcCCCCCEEEeeCCCCCCC----CchhhhCCCCCcEeecCCCCCCCCCchhhh-----CCCCC
Q 044868 251 SSNSLTGS----IPDSIDKLSLLAFMALSNNKLTGN----FPKGLAKLQSLQYFLMDDNPMFIPLPVEFG-----ILVKL 317 (463)
Q Consensus 251 ~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L 317 (463)
++|.+++. ++..+...++|++|++++|.+++. +...+..+++|++|++++|.+.+.....+. ..+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 99998853 334455667999999999998743 334566788999999999998764333332 23799
Q ss_pred CEEeccCCCCCC----CCccccCCCCcccEEEcccccCCCC----chhhhCCC-CCCCeEEccCCCC
Q 044868 318 QELRLANSGYSG----SIPPSFSQLNNLSTLSLQNNRLTGE----IPVVFGSL-SHIYHLNLSRNFL 375 (463)
Q Consensus 318 ~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l 375 (463)
++|++++|.+++ .+...+..+++|+++++++|.++.. ....+... +.|+++++.+|.+
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999999973 2334556678999999999999855 44444455 7899999988864
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=5.4e-21 Score=161.56 Aligned_cols=180 Identities=30% Similarity=0.510 Sum_probs=114.6
Q ss_pred CCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEee
Q 044868 218 LRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFL 297 (463)
Q Consensus 218 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 297 (463)
+.+++.|.+++|+++ .+|..++.+.+|+.|++++|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 334444444444444 34444445555555555555554 44445555555555555555554 4555555555555555
Q ss_pred cCCCCCCC-CCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC
Q 044868 298 MDDNPMFI-PLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 298 L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 376 (463)
|.+|++.. ..|..|..++.|+.|+|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|++++|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 55555532 35555666677777777777776 77778888888888888888887 78888888888888888888888
Q ss_pred ccCCCCchhhhccC--CeEeccCCCCCCC
Q 044868 377 GVVPFNSSFLKRLG--RNLDLSGNPGLCL 403 (463)
Q Consensus 377 ~~~p~~~~~l~~L~--~~L~L~~N~~~c~ 403 (463)
.+|..++.+.... +.+.+.+|||.-.
T Consensus 187 -vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 187 -VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred -ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 4554555554332 4678889998643
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=3.1e-20 Score=156.94 Aligned_cols=156 Identities=31% Similarity=0.498 Sum_probs=97.1
Q ss_pred CCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCE
Q 044868 168 SSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQK 247 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 247 (463)
.++.+.+.|.|++|+++ .+|+.+..+.+|+.|++++|+++ .+|..+..+++|+.|+++.|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34555666667777766 55666666777777777777766 66666667777777777766666 56666777777777
Q ss_pred EeccCCCCCC-CCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCC
Q 044868 248 LDLSSNSLTG-SIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSG 326 (463)
Q Consensus 248 L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 326 (463)
||+.+|++.. .+|..|..++.|+.|.+++|.+. .+|..++++++|+.|.+.+|.+. ..|.+++.++.|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 7776666653 35555666666666666666665 55555666666666666555552 344445555555555555555
Q ss_pred CC
Q 044868 327 YS 328 (463)
Q Consensus 327 l~ 328 (463)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 54
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=4.9e-19 Score=167.51 Aligned_cols=249 Identities=25% Similarity=0.237 Sum_probs=160.2
Q ss_pred EEEcccCCCCCcccccc-cccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeec-CCCCCCCcc-ccCCCCCCc
Q 044868 122 SVFFFSCFTHTKTTLSV-SADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQ-NRLNGQIPV-KIFSLNSLV 198 (463)
Q Consensus 122 ~L~L~~~~~~~~~~ip~-~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~-~l~~l~~L~ 198 (463)
.++|..|.+ ..||. .|+.+++ |+.|||++| .++..-|++|.+++.|..|-+.+ |+|+ .+|. .|+++..|+
T Consensus 71 eirLdqN~I---~~iP~~aF~~l~~--LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 71 EIRLDQNQI---SSIPPGAFKTLHR--LRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred EEEeccCCc---ccCChhhccchhh--hceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 444444443 33333 3455555 666666666 66666666666666666555554 5565 3333 455566666
Q ss_pred EEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCch-hhcCCCCcCEEeccCCCCCC------------CCchhhhc
Q 044868 199 HLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS-TIGQLGMLQKLDLSSNSLTG------------SIPDSIDK 265 (463)
Q Consensus 199 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~ 265 (463)
.|.+.-|++.-...+.|..+++|..|.+..|.+. .++. +|..+..++.+.+..|.+.. ..|..++.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 6666666666555556666666666666666665 2333 55555666666665554210 01111111
Q ss_pred C----------------------CCCCEE--Ee-eCCCCCCCCc-hhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCE
Q 044868 266 L----------------------SLLAFM--AL-SNNKLTGNFP-KGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQE 319 (463)
Q Consensus 266 l----------------------~~L~~L--~L-~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 319 (463)
. ..++.+ .+ +.+...+.-| ..|.++++|++|+|++|.+++..+.+|.+..++++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 1 011211 11 1222222333 35889999999999999999999999999999999
Q ss_pred EeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 320 LRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 320 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
|.|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|.+|+|-.|.+...
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 99999999866566788999999999999999988888999999999999999988643
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=3.3e-15 Score=158.41 Aligned_cols=157 Identities=29% Similarity=0.503 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCC--CCCCCCCCCCCCC-CCccceEeCCCC-CCcccEEEEECCCCCCCCCCccccccccc
Q 044868 39 NGMLPSEAETLFKIMDSMSSDQ--SWRVSYSNPCKPG-SSWPGIECKQGN-DGYLHVTRLDFGTRPNPTCKKTATFPYQI 114 (463)
Q Consensus 39 ~~~~~~~~~aLl~~~~~~~~~~--~W~~~~~~~C~~~-~~w~gv~C~~~~-~~~~~v~~l~L~~~~~~~~~~~g~l~~~l 114 (463)
..+.+.|.+||+++|+++..+. +|.+ |+|.+. ..|.||.|+... .+..+|+.|+|+. +.+.|.+|+.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~~~W~g---~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~-----n~L~g~ip~~i 438 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLRFGWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN-----QGLRGFIPNDI 438 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcccCCCCC---CCCCCcccccccceeeccCCCCceEEEEEECCC-----CCccccCCHHH
Confidence 3456789999999999986543 7853 577422 369999996321 1123577888763 33455555555
Q ss_pred cCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCC
Q 044868 115 FSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSL 194 (463)
Q Consensus 115 ~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 194 (463)
+++++ |++|+|++| .+.|.+|..++.+++|+.|+|++|+++|.+|..++++
T Consensus 439 ~~L~~----------------------------L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 439 SKLRH----------------------------LQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred hCCCC----------------------------CCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 55555 445555555 5555666666666666666666666666666666666
Q ss_pred CCCcEEEcccCCCCCCCchhcCCC-CCCCEEEcccCcCC
Q 044868 195 NSLVHLDLSYNLLAGTIPVQVGNL-RNLVGLDLSYNSLT 232 (463)
Q Consensus 195 ~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~ 232 (463)
++|++|+|++|+++|.+|..+..+ .++..+++.+|...
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence 666666666666666666555442 34555666666543
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.40 E-value=3.6e-13 Score=136.08 Aligned_cols=199 Identities=35% Similarity=0.518 Sum_probs=126.5
Q ss_pred EEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCC-CCcEEEcccCCCCCCCchhcCCCCCCCEEEccc
Q 044868 150 QLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLN-SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSY 228 (463)
Q Consensus 150 ~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 228 (463)
.+++..+ .+...+ ..+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .+|..++.+++|+.|++++
T Consensus 97 ~l~~~~~-~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLN-RLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeecccc-ccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 4566665 332222 23455567777777777777 5666565563 7777777777776 5555667777777777777
Q ss_pred CcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCc
Q 044868 229 NSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLP 308 (463)
Q Consensus 229 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 308 (463)
|+++ .+|...+..+.|+.|++++|+++ .+|..+.....|++|.+++|... ..+..+.++.++..+.+.+|++... +
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~ 248 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-P 248 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-c
Confidence 7777 45555546677777777777776 55655555556777777777533 3455566667777777666666432 4
Q ss_pred hhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhh
Q 044868 309 VEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVV 358 (463)
Q Consensus 309 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 358 (463)
..++.++++++|++++|.++. ++. ++.+.+++.|++++|.+....|..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred chhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 455666667777777777763 332 566667777777777776554443
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.39 E-value=4.6e-13 Score=135.31 Aligned_cols=197 Identities=36% Similarity=0.556 Sum_probs=112.5
Q ss_pred EEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCC-CCCEEEcccCcCCCCCchhhcCCCCcCEEeccCC
Q 044868 175 ILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLR-NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSN 253 (463)
Q Consensus 175 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 253 (463)
.+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 455555555322 223444556666666666666 4555555553 6666666666665 44445566666666666666
Q ss_pred CCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCcc
Q 044868 254 SLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPP 333 (463)
Q Consensus 254 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 333 (463)
+++ .+|...+..+.|+.|++++|++. .+|..+.....|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 666 44444445666666666666666 55555555555666666666421 23334555566666666666655 2245
Q ss_pred ccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCC
Q 044868 334 SFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 334 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 380 (463)
.+..++++++|++++|+++ .++. ++.+.+++.|++++|.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 5555666666666666666 3333 5566666666666666654443
No 26
>PLN03150 hypothetical protein; Provisional
Probab=99.39 E-value=2e-12 Score=137.34 Aligned_cols=114 Identities=29% Similarity=0.462 Sum_probs=104.9
Q ss_pred CCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEcc
Q 044868 292 SLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLS 371 (463)
Q Consensus 292 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 371 (463)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|+++|.+|..+.++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCchhh-hccCCeEeccCCCCCCCCcc
Q 044868 372 RNFLDGVVPFNSSFL-KRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 372 ~N~l~~~~p~~~~~l-~~L~~~L~L~~N~~~c~~~~ 406 (463)
+|+++|.+|..+... ..+ ..+++.+|+.+|+.+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~-~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHR-ASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccC-ceEEecCCccccCCCC
Confidence 999999999877653 344 6899999999997543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.38 E-value=1.8e-14 Score=142.62 Aligned_cols=196 Identities=32% Similarity=0.405 Sum_probs=154.2
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEE
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKL 248 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 248 (463)
.+.--...||+.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ .+|..+..++ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3555566788888887 78888888888888888888887 78888888888999999999888 6777777665 8888
Q ss_pred eccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCC
Q 044868 249 DLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 249 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 328 (463)
-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.+..|.+.. +|.++..+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee
Confidence 88888887 77888888888888888888887 677788888888888888888854 44455544 5888888888888
Q ss_pred CCCccccCCCCcccEEEcccccCCCCchhhhC---CCCCCCeEEccCCC
Q 044868 329 GSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFG---SLSHIYHLNLSRNF 374 (463)
Q Consensus 329 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~ 374 (463)
.+|..|.+++.|++|-|.+|.+. ..|..+. ...-.++|+.+-++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 78888888888888888888887 4454332 23345777777774
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=9.6e-14 Score=137.44 Aligned_cols=192 Identities=32% Similarity=0.433 Sum_probs=159.1
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
-...|++.| .+ ..+|..+..+..|+.+.|.+|.+. .+|..+.++..|.+|||+.|+++ .+|..+..++ |+.|-++
T Consensus 77 t~~aDlsrN-R~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRN-RF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhcccc-cc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 556788888 44 477888888889999999999998 78888999999999999999998 7788777664 8899999
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL 307 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 307 (463)
+|+++ .+|+.++.+..|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||++.|++ ..+
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki-s~i 226 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI-SYL 226 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce-eec
Confidence 99988 78888888889999999999988 67888899999999999999988 677778755 488999999988 467
Q ss_pred chhhhCCCCCCEEeccCCCCCCCCcccc---CCCCcccEEEccccc
Q 044868 308 PVEFGILVKLQELRLANSGYSGSIPPSF---SQLNNLSTLSLQNNR 350 (463)
Q Consensus 308 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~ 350 (463)
|..|..++.|++|.|.+|.+. ..|..+ +...-.++|+..-++
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888999999999999999998 445443 334456677777774
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=2.5e-12 Score=120.84 Aligned_cols=83 Identities=28% Similarity=0.301 Sum_probs=41.4
Q ss_pred ccEEEccCCCCCCCC----CchhcCCCCCCcEEEeecCCCCC----CCcc-------ccCCCCCCcEEEcccCCCCCCCc
Q 044868 148 LQQLSLRSNPALVGP----IPPQISSLKFLQILTLSQNRLNG----QIPV-------KIFSLNSLVHLDLSYNLLAGTIP 212 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~-------~l~~l~~L~~L~Ls~n~l~~~~p 212 (463)
+++++|++| .+... +...+.+.++|+..++++ -++| .+|. .+..+++|++|+||.|-+.-..+
T Consensus 32 ~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 32 LTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred eEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 777777776 44321 233445566666666653 2222 2232 22334566666666665543322
Q ss_pred hh----cCCCCCCCEEEcccCcCC
Q 044868 213 VQ----VGNLRNLVGLDLSYNSLT 232 (463)
Q Consensus 213 ~~----l~~l~~L~~L~L~~n~l~ 232 (463)
.. +..+..|++|.|.+|.+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCC
Confidence 22 234555666666555554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.2e-12 Score=123.21 Aligned_cols=209 Identities=25% Similarity=0.268 Sum_probs=124.5
Q ss_pred CCCCCCcEEEeecCCCCCCCc--cccCCCCCCcEEEcccCCCCCC--CchhcCCCCCCCEEEcccCcCCCCCch-hhcCC
Q 044868 168 SSLKFLQILTLSQNRLNGQIP--VKIFSLNSLVHLDLSYNLLAGT--IPVQVGNLRNLVGLDLSYNSLTGSIPS-TIGQL 242 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l 242 (463)
+++++|+...|.++.+. ..+ .....+++++.|||+.|-+..- +-.....+++|+.|+++.|++...... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45677777777777665 222 2334577777777777766532 223345677777777777776522211 11245
Q ss_pred CCcCEEeccCCCCCCC-CchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC-chhhhCCCCCCEE
Q 044868 243 GMLQKLDLSSNSLTGS-IPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL-PVEFGILVKLQEL 320 (463)
Q Consensus 243 ~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L 320 (463)
++|+.|.|+.|.++.. +......+|+|+.|++..|.....-.....-+..|++|+|++|++.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 6777777777777632 2233445677777777777422222233445567777777777764432 1234566777777
Q ss_pred eccCCCCCCCC-ccc-----cCCCCcccEEEcccccCCCCch--hhhCCCCCCCeEEccCCCCCcc
Q 044868 321 RLANSGYSGSI-PPS-----FSQLNNLSTLSLQNNRLTGEIP--VVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 321 ~L~~n~l~~~~-p~~-----l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
+++.+.+...- |+. ...+++|++|+++.|++. ..+ ..+..+++|+.|.+..|.++.+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 77777776432 222 235677888888888875 332 2345566777777777777643
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=9.7e-12 Score=114.53 Aligned_cols=132 Identities=27% Similarity=0.292 Sum_probs=74.0
Q ss_pred CCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEec
Q 044868 243 GMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRL 322 (463)
Q Consensus 243 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 322 (463)
..|+++||++|.|+ .+.++..-.++++.|+++.|.+. .+ ..+..+++|+.|||++|.++.. ..+-..+-++++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhh-hhhHhhhcCEeeeeh
Confidence 44555555555554 34444444555555555555554 22 2255555555555555555322 222334455666666
Q ss_pred cCCCCCCCCccccCCCCcccEEEcccccCCCCc-hhhhCCCCCCCeEEccCCCCCccCC
Q 044868 323 ANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEI-PVVFGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 323 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p 380 (463)
++|.+.. -..++.+-+|..||+++|++.... ...++++|.|+.+.|.+|.+.+.+.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 6665542 123455566777777777776321 2357778888888888888876544
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=6.2e-12 Score=118.21 Aligned_cols=188 Identities=20% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCCCCCcEEEeecCCCCCCCcccc----CCCCCCcEEEcccCCCCCCCchh-------------cCCCCCCCEEEcccCc
Q 044868 168 SSLKFLQILTLSQNRLNGQIPVKI----FSLNSLVHLDLSYNLLAGTIPVQ-------------VGNLRNLVGLDLSYNS 230 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~l~~~~p~~-------------l~~l~~L~~L~L~~n~ 230 (463)
-..++|++||||+|-+....+..| ..++.|++|.|.+|.+.-.--.. ...-++|+++...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 445577777777777654333332 34677777777777665111111 1223345555555554
Q ss_pred CCCC----CchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCC
Q 044868 231 LTGS----IPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIP 306 (463)
Q Consensus 231 l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 306 (463)
+... +...|...+.|+.+.+..|.|...--. .+...+..+++|+.|+|.+|.++..
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhhhH
Confidence 4311 122333344444444444444311100 0112334444444444444444322
Q ss_pred Cc----hhhhCCCCCCEEeccCCCCCCCCcccc-----CCCCcccEEEcccccCCCC----chhhhCCCCCCCeEEccCC
Q 044868 307 LP----VEFGILVKLQELRLANSGYSGSIPPSF-----SQLNNLSTLSLQNNRLTGE----IPVVFGSLSHIYHLNLSRN 373 (463)
Q Consensus 307 ~~----~~l~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N 373 (463)
.. ..+..+++|+.|++++|.+......++ ...|+|+.|.+.+|.++.. +...+...+.|+.|+|++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 11 122334445555555555443222211 1245666666666665522 2223344566666666666
Q ss_pred CC
Q 044868 374 FL 375 (463)
Q Consensus 374 ~l 375 (463)
.+
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 66
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6.2e-12 Score=121.27 Aligned_cols=212 Identities=24% Similarity=0.202 Sum_probs=155.3
Q ss_pred CCCCCCcEEEcccCCCCCCCc--hhcCCCCCCCEEEcccCcCCCC--CchhhcCCCCcCEEeccCCCCCCCCch-hhhcC
Q 044868 192 FSLNSLVHLDLSYNLLAGTIP--VQVGNLRNLVGLDLSYNSLTGS--IPSTIGQLGMLQKLDLSSNSLTGSIPD-SIDKL 266 (463)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l 266 (463)
.++.+|++..|.++... ..+ .....+++++.|||+.|-+..- +-.....+++|+.|+++.|++.-.... .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46889999999998876 333 3567899999999999987732 234456899999999999988633221 12357
Q ss_pred CCCCEEEeeCCCCCCC-CchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCC-ccccCCCCcccEE
Q 044868 267 SLLAFMALSNNKLTGN-FPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSI-PPSFSQLNNLSTL 344 (463)
Q Consensus 267 ~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L 344 (463)
+.|+.|.++.|.++.. +...+..+++|+.|+|..|............+..|+.|||++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 8899999999999842 3334567899999999999644444445566788999999999987432 1356788999999
Q ss_pred EcccccCCCC-chhh-----hCCCCCCCeEEccCCCCCccCC-CCchhhhccCCeEeccCCCCCCCCc
Q 044868 345 SLQNNRLTGE-IPVV-----FGSLSHIYHLNLSRNFLDGVVP-FNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 345 ~Ls~N~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
+++.+.+... .|+. ...+++|++|++..|++...-. ..+..++++ +.+....|++.-...
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nl-k~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENL-KHLRITLNYLNKETD 343 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchh-hhhhccccccccccc
Confidence 9999998743 3333 3567899999999999964322 234445566 667777777655443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=9.9e-12 Score=114.47 Aligned_cols=130 Identities=26% Similarity=0.283 Sum_probs=88.9
Q ss_pred CCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEee
Q 044868 218 LRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFL 297 (463)
Q Consensus 218 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 297 (463)
-+.|+++||++|.++ .+.++..-++.++.|++++|.+... +.+..+++|+.|||++|.++ .+..+-.++-+.++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 356777788888777 5666666777788888888877632 23667777888888887776 4444555667777788
Q ss_pred cCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCC-ccccCCCCcccEEEcccccCCC
Q 044868 298 MDDNPMFIPLPVEFGILVKLQELRLANSGYSGSI-PPSFSQLNNLSTLSLQNNRLTG 353 (463)
Q Consensus 298 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~ 353 (463)
|++|.+... ..++.+-+|..||+++|+|.... ...++++|-|+++.|.+|.+.+
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 887776332 23556667777888888776321 2356777778888888887774
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=1.8e-10 Score=101.40 Aligned_cols=82 Identities=33% Similarity=0.406 Sum_probs=15.4
Q ss_pred CCCCcEEEeecCCCCCCCccccC-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhh-cCCCCcCE
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTI-GQLGMLQK 247 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~ 247 (463)
..++++|+|++|.++ .+. .++ .+.+|+.|++++|.++ .+. .+..++.|++|++++|+++. +.+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 334555555555554 222 233 3445555555555554 221 24444555555555555542 22222 23445555
Q ss_pred EeccCCCCC
Q 044868 248 LDLSSNSLT 256 (463)
Q Consensus 248 L~L~~n~l~ 256 (463)
|++++|++.
T Consensus 93 L~L~~N~I~ 101 (175)
T PF14580_consen 93 LYLSNNKIS 101 (175)
T ss_dssp EE-TTS---
T ss_pred EECcCCcCC
Confidence 555555443
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=2.4e-10 Score=100.66 Aligned_cols=127 Identities=30% Similarity=0.336 Sum_probs=41.6
Q ss_pred cCCCCCCcEEEcccCCCCCCCchhcC-CCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhh-hcCCC
Q 044868 191 IFSLNSLVHLDLSYNLLAGTIPVQVG-NLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSI-DKLSL 268 (463)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~ 268 (463)
+.+..++++|+|++|.|+ .+ +.++ .+.+|+.|++++|.++. + +.+..+++|++|++++|+++. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 445567788888888877 33 2454 46778888888888773 3 246677788888888888874 33333 35777
Q ss_pred CCEEEeeCCCCCCC-CchhhhCCCCCcEeecCCCCCCCCCc---hhhhCCCCCCEEec
Q 044868 269 LAFMALSNNKLTGN-FPKGLAKLQSLQYFLMDDNPMFIPLP---VEFGILVKLQELRL 322 (463)
Q Consensus 269 L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L 322 (463)
|++|++++|++... .-..+..+++|+.|+|.+|++....- ..+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 88888888877631 11345666777777777776653321 12345566666653
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=9.4e-11 Score=127.52 Aligned_cols=252 Identities=20% Similarity=0.203 Sum_probs=115.9
Q ss_pred CCCCEEEcccCCCCCccccccc-ccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCC
Q 044868 118 SYLQSVFFFSCFTHTKTTLSVS-ADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNS 196 (463)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~ip~~-~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 196 (463)
+.|++|-+.+|.. ....++.. +..++. |++|||++| .-.+.+|.++++|-+||+|++++..+. .+|..+.++..
T Consensus 545 ~~L~tLll~~n~~-~l~~is~~ff~~m~~--LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 545 PKLRTLLLQRNSD-WLLEISGEFFRSLPL--LRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred CccceEEEeecch-hhhhcCHHHHhhCcc--eEEEECCCC-CccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 3455555555431 01222222 344555 666666665 445556666666666666666666665 56666666666
Q ss_pred CcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCC--CCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCC----
Q 044868 197 LVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLT--GSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLA---- 270 (463)
Q Consensus 197 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---- 270 (463)
|.+|++.++.....+|.....+++|++|.+...... ...-..+..+.+|+.+....... .+-..+..++.|.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhH
Confidence 666666665544344444455666666666544311 11222333344444444322221 0011111222222
Q ss_pred EEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhC------CCCCCEEeccCCCCCCCCccccCCCCcccEE
Q 044868 271 FMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGI------LVKLQELRLANSGYSGSIPPSFSQLNNLSTL 344 (463)
Q Consensus 271 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 344 (463)
.+.+..+... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++... ..+.+..-.++|+.|
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL 775 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence 1221112211 23344556666666666666654322211110 112222222222111 122222334677777
Q ss_pred EcccccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 345 SLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 345 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
.+.++.....+......+..+..+.+..+.+.+.
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 7777666655555555555555555555555544
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=4.6e-11 Score=121.37 Aligned_cols=175 Identities=32% Similarity=0.391 Sum_probs=78.7
Q ss_pred cCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 167 ISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 167 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
+..+++|+.|++.+|++. .+...+..+++|++|++++|.|+... .+..++.|+.|++++|.++. + ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD-I-SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-c-cCCccchhhh
Confidence 445555555555555554 22222444555555555555555322 13344445555555555542 1 2333355555
Q ss_pred EEeccCCCCCCCCc-hhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCC--CCCEEecc
Q 044868 247 KLDLSSNSLTGSIP-DSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILV--KLQELRLA 323 (463)
Q Consensus 247 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~ 323 (463)
.+++++|++...-+ . ...+.+++.+++++|.+... ..+..+..+..+++..|.+...-+. ..+. +|+.++++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l--~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGL--NELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCc--ccchhHHHHHHhcc
Confidence 55555555553222 1 34455555555555554411 1222233333334444444322211 1111 24555555
Q ss_pred CCCCCCCCccccCCCCcccEEEcccccCC
Q 044868 324 NSGYSGSIPPSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 324 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (463)
+|++. ..+..+..+..+..|++.+|++.
T Consensus 241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 241 GNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred cCccc-cccccccccccccccchhhcccc
Confidence 55554 22233344455555555555554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-09 Score=119.22 Aligned_cols=262 Identities=23% Similarity=0.247 Sum_probs=160.7
Q ss_pred CCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCC-CCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCC
Q 044868 117 LSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPA-LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLN 195 (463)
Q Consensus 117 l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 195 (463)
....|.+.+.++.. ..++... .++.|++|-+..|.. +.....+.|..++.|++|||++|.--+.+|..++++-
T Consensus 522 ~~~~rr~s~~~~~~---~~~~~~~---~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKI---EHIAGSS---ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred hhheeEEEEeccch---hhccCCC---CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 35556666655532 1222222 122388888888821 3333344577899999999998887778999999999
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCC--CCCCchhhhcCCCCCEEE
Q 044868 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSL--TGSIPDSIDKLSLLAFMA 273 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~ 273 (463)
+|++|++++..+. .+|..++++.+|.+|++..+.....+|.....+++|++|.+..... +...-..+.++..|+.+.
T Consensus 596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 9999999999988 8899999999999999998876656666677789999999876542 222333445555555555
Q ss_pred eeCCCCCCCCchhhhCCCCCc----EeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCC------CCcccE
Q 044868 274 LSNNKLTGNFPKGLAKLQSLQ----YFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQ------LNNLST 343 (463)
Q Consensus 274 L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~ 343 (463)
...... .+-..+..+..|. .+.+.++.. ...+..+..+.+|+.|.+.++.+.......... ++++..
T Consensus 675 ~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 675 ITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred eecchh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 533322 1111223333332 333333222 223445678889999999999887543333221 223333
Q ss_pred EEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhcc
Q 044868 344 LSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRL 389 (463)
Q Consensus 344 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 389 (463)
+...++... ..+.+..-.++|+.|.+..+.....+......+..+
T Consensus 752 ~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l 796 (889)
T KOG4658|consen 752 VSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL 796 (889)
T ss_pred HHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhc
Confidence 333333332 233344456899999999876654544333333333
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-10 Score=118.64 Aligned_cols=199 Identities=30% Similarity=0.342 Sum_probs=152.3
Q ss_pred CCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCE
Q 044868 168 SSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQK 247 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 247 (463)
..+..++.++++.|.+. .+-..+..+++|+.|++.+|++. .+...+..+++|++|++++|.++... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence 45677778889989887 34445778999999999999998 44443678999999999999998443 4567788999
Q ss_pred EeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchh-hhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCC
Q 044868 248 LDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKG-LAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSG 326 (463)
Q Consensus 248 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 326 (463)
|++++|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..... +..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhccccc
Confidence 99999999843 335568999999999999984433 2 5788999999999998865432 3344556666888998
Q ss_pred CCCCCccccCCCCc--ccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 327 YSGSIPPSFSQLNN--LSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 327 l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
++..-+ +..+.. |+.+++++|.+. .++..+..+..+..+++.+|++...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc
Confidence 874322 222333 899999999998 4546677888999999999988754
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.82 E-value=2.9e-09 Score=77.15 Aligned_cols=61 Identities=43% Similarity=0.543 Sum_probs=40.3
Q ss_pred CCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCC
Q 044868 315 VKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFL 375 (463)
Q Consensus 315 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 375 (463)
++|++|++++|+++...+..|..+++|++|++++|+++...+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666777666655555666677777777777777655556666777777777777654
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.81 E-value=2.2e-10 Score=116.83 Aligned_cols=199 Identities=29% Similarity=0.291 Sum_probs=136.7
Q ss_pred CCCCcEEEcccCCCCCCC-chhcCCCCCCCEEEcccCcCCCCCchhhcCC-CCcCEEeccCCCCC----------CCCch
Q 044868 194 LNSLVHLDLSYNLLAGTI-PVQVGNLRNLVGLDLSYNSLTGSIPSTIGQL-GMLQKLDLSSNSLT----------GSIPD 261 (463)
Q Consensus 194 l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~----------~~~p~ 261 (463)
+++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+.. ...+..+ ..|++|.- .|.+. |.+..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 344455554433322222 5567778899999999998762 1122111 13444422 22221 11111
Q ss_pred hhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCcc-ccCCCCc
Q 044868 262 SIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPP-SFSQLNN 340 (463)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~ 340 (463)
.+ ..-+|.+.+.+.|.+. .+..++.-++.|+.|+|++|++.... .+..+++|++|||+.|.+. .+|. ....++
T Consensus 160 s~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 160 SP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK- 233 (1096)
T ss_pred ch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-
Confidence 11 1236788888999987 66778888999999999999997764 6888999999999999998 4554 334444
Q ss_pred ccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCC-CCchhhhccCCeEeccCCCCCCCC
Q 044868 341 LSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP-FNSSFLKRLGRNLDLSGNPGLCLN 404 (463)
Q Consensus 341 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~~L~L~~N~~~c~~ 404 (463)
|..|.+++|.++ . -..+.++.+|+.||+++|-|.+.-. ..+..+..| +.|+|.|||+-|..
T Consensus 234 L~~L~lrnN~l~-t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L-~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-T-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSL-IVLWLEGNPLCCAP 295 (1096)
T ss_pred heeeeecccHHH-h-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHH-HHHhhcCCccccCH
Confidence 999999999998 3 3357889999999999999886543 224456677 89999999987753
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=7.8e-09 Score=74.84 Aligned_cols=61 Identities=33% Similarity=0.444 Sum_probs=42.3
Q ss_pred CCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccC
Q 044868 291 QSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRL 351 (463)
Q Consensus 291 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 351 (463)
++|++|++++|++....+..|..+++|++|++++|.++...+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566677777766666666667777777777777777655566777777777777777764
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=8.9e-10 Score=112.45 Aligned_cols=126 Identities=28% Similarity=0.229 Sum_probs=65.2
Q ss_pred cCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccC
Q 044868 245 LQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLAN 324 (463)
Q Consensus 245 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 324 (463)
|.+.+.++|.+. ....++.-++.|+.|+|+.|+++.. +.+..+++|++|||+.|.+....--...++ +|+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 444445555554 3344444455555555555555422 245555555555555555543322222222 266666666
Q ss_pred CCCCCCCccccCCCCcccEEEcccccCCCCc-hhhhCCCCCCCeEEccCCCCC
Q 044868 325 SGYSGSIPPSFSQLNNLSTLSLQNNRLTGEI-PVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 325 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~ 376 (463)
|.++.. ..+.++++|+.||+++|-+.+-- -..++.+..|+.|+|.+|.+-
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666521 23445666666677766665321 122445556666677776664
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.41 E-value=3.4e-07 Score=60.95 Aligned_cols=36 Identities=31% Similarity=0.839 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCC-C----CCCCCCC-CCCCCCCCCccceEeC
Q 044868 43 PSEAETLFKIMDSMSS-D----QSWRVSY-SNPCKPGSSWPGIECK 82 (463)
Q Consensus 43 ~~~~~aLl~~~~~~~~-~----~~W~~~~-~~~C~~~~~w~gv~C~ 82 (463)
++|++||++||+++.. + .+|+... .+||+ |.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~----W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCS----WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCC----STTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCee----eccEEeC
Confidence 5799999999999974 3 5898653 68997 9999996
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.40 E-value=9.1e-08 Score=87.52 Aligned_cols=185 Identities=18% Similarity=0.177 Sum_probs=91.3
Q ss_pred CCCCCEEEcccCCCCCc--ccccccccccCCCCccEEEccCCCCCCCC----Cch-------hcCCCCCCcEEEeecCCC
Q 044868 117 LSYLQSVFFFSCFTHTK--TTLSVSADRLYNSSLQQLSLRSNPALVGP----IPP-------QISSLKFLQILTLSQNRL 183 (463)
Q Consensus 117 l~~L~~L~L~~~~~~~~--~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~----~p~-------~l~~l~~L~~L~L~~n~l 183 (463)
+..+..++||+|.++.. ..+...+.+-.+ |+..+++.- ++|. +++ .+-++++|+..+|+.|.+
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~--L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRN--LRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcc--eeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 55566666666654221 112333344444 666666553 3332 222 245677777777777777
Q ss_pred CCCCcccc----CCCCCCcEEEcccCCCCCC----Cchh---------cCCCCCCCEEEcccCcCCCCC----chhhcCC
Q 044868 184 NGQIPVKI----FSLNSLVHLDLSYNLLAGT----IPVQ---------VGNLRNLVGLDLSYNSLTGSI----PSTIGQL 242 (463)
Q Consensus 184 ~~~~p~~l----~~l~~L~~L~Ls~n~l~~~----~p~~---------l~~l~~L~~L~L~~n~l~~~~----p~~l~~l 242 (463)
....|..+ +..+.|++|.+++|.+.-. +-.. ..+-|.|++.....|++..-. ...+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 65555433 3456777777777765411 1111 123456666666666654111 1112222
Q ss_pred CCcCEEeccCCCCCCCCc-----hhhhcCCCCCEEEeeCCCCCCC----CchhhhCCCCCcEeecCCCCCCC
Q 044868 243 GMLQKLDLSSNSLTGSIP-----DSIDKLSLLAFMALSNNKLTGN----FPKGLAKLQSLQYFLMDDNPMFI 305 (463)
Q Consensus 243 ~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~ 305 (463)
.+|+++.+..|.|....- ..+..+++|+.||+.+|.++-. +...+..++.|++|.+.+|-++.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 456666666665542211 1123345666666666655422 12233344445555555555443
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=6.7e-08 Score=89.47 Aligned_cols=186 Identities=20% Similarity=0.175 Sum_probs=85.1
Q ss_pred CCCCcEEEcccCCCCC--CCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCC-CchhhhcCCCCC
Q 044868 194 LNSLVHLDLSYNLLAG--TIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGS-IPDSIDKLSLLA 270 (463)
Q Consensus 194 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 270 (463)
.+.++++||.+|.++. .+...+.++|.|+.|+++.|++...+-..-....+|+.|-|.+..+.-. ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4455555666655552 2233345556666666666655532211112334555555555444321 222334455555
Q ss_pred EEEeeCCCCCCCC--chhhhCC-CCCcEeecCCCCCCCC--CchhhhCCCCCCEEeccCCCCCCCC-ccccCCCCcccEE
Q 044868 271 FMALSNNKLTGNF--PKGLAKL-QSLQYFLMDDNPMFIP--LPVEFGILVKLQELRLANSGYSGSI-PPSFSQLNNLSTL 344 (463)
Q Consensus 271 ~L~L~~n~l~~~~--p~~l~~l-~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L 344 (463)
.|+++.|.+.... .+.+... +.+++|+...|..... .-.--..++++..+.+..|.+...- ......++.+.-|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 5555555322100 0001111 1222333322211000 0000112346666666666554322 2234455666677
Q ss_pred EcccccCCCC-chhhhCCCCCCCeEEccCCCCCccC
Q 044868 345 SLQNNRLTGE-IPVVFGSLSHIYHLNLSRNFLDGVV 379 (463)
Q Consensus 345 ~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~ 379 (463)
+|+.|++..- --+.+..+++|..|.+++|.+...+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 7777777521 2245666777777777777766444
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2e-08 Score=82.73 Aligned_cols=133 Identities=22% Similarity=0.207 Sum_probs=88.3
Q ss_pred CCEEEeeCCCCCCCCchhh---hCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEE
Q 044868 269 LAFMALSNNKLTGNFPKGL---AKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLS 345 (463)
Q Consensus 269 L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 345 (463)
+..++|++|.+. .+++.. .....|+..+|++|.+....+..-...+.++.|+|++|+++ .+|+.+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445666666654 344433 34445666678888775544444445567888888888887 6777788888888888
Q ss_pred cccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 346 LQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 346 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
++.|.+. ..|+.+..+.++-.|+..+|.+. .+|..+ ..+.+...+++.++||--.++.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl-~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL-FYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH-hccccHHHHHhcCCcccccCcc
Confidence 8888888 66777777888888888888876 444332 2233324566777787666543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=2e-07 Score=86.45 Aligned_cols=114 Identities=23% Similarity=0.246 Sum_probs=58.8
Q ss_pred ccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCC--CCchhcCCCCCCcEEEeecCCCCCCCcccc
Q 044868 114 IFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVG--PIPPQISSLKFLQILTLSQNRLNGQIPVKI 191 (463)
Q Consensus 114 l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 191 (463)
++...-++.|.+.++.+...|..-..-...+. ++.+||.+| .++. .+..-+.+||.|++|+|+.|.+...|-..-
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~--v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp 117 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTD--VKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP 117 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhh--hhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc
Confidence 33333444455555544333333322233344 667777776 5543 233334667777777777777663332211
Q ss_pred CCCCCCcEEEcccCCCCCC-CchhcCCCCCCCEEEcccCc
Q 044868 192 FSLNSLVHLDLSYNLLAGT-IPVQVGNLRNLVGLDLSYNS 230 (463)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~ 230 (463)
....+|+.|-|.+..+... ....+..+|.++.|+++.|+
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 3455667776666655432 22334556666666666663
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.1e-08 Score=92.74 Aligned_cols=175 Identities=23% Similarity=0.169 Sum_probs=96.4
Q ss_pred CCcEEEcccCCCCC-CCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCC-CCCCC-CchhhhcCCCCCEE
Q 044868 196 SLVHLDLSYNLLAG-TIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSN-SLTGS-IPDSIDKLSLLAFM 272 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L 272 (463)
.|++|||+...++. .+-.-+..+.+|+.|.+.++++...+...++.-.+|+.|+++.+ .++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666665542 12223345566666666666666666666666666666666654 23321 11234556666777
Q ss_pred EeeCCCCCCCCchh-hhC-CCCCcEeecCCCCC---CCCCchhhhCCCCCCEEeccCCC-CCCCCccccCCCCcccEEEc
Q 044868 273 ALSNNKLTGNFPKG-LAK-LQSLQYFLMDDNPM---FIPLPVEFGILVKLQELRLANSG-YSGSIPPSFSQLNNLSTLSL 346 (463)
Q Consensus 273 ~L~~n~l~~~~p~~-l~~-l~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L 346 (463)
+++.|.+....-.. +.+ -++|+.|+|+++.- ...+..-...+++|..|||++|. ++...-..|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77766655322111 111 13566666666432 11112223456777777777663 33333345566777788777
Q ss_pred ccccCCCCchh---hhCCCCCCCeEEccC
Q 044868 347 QNNRLTGEIPV---VFGSLSHIYHLNLSR 372 (463)
Q Consensus 347 s~N~l~~~~p~---~l~~l~~L~~L~L~~ 372 (463)
+.|... +|. .+...|+|.+|++.+
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEecc
Confidence 777653 444 345567788887765
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.3e-08 Score=92.53 Aligned_cols=193 Identities=22% Similarity=0.159 Sum_probs=120.4
Q ss_pred CCcEEEeecCCCCC-CCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCc-CCCC-CchhhcCCCCcCEE
Q 044868 172 FLQILTLSQNRLNG-QIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNS-LTGS-IPSTIGQLGMLQKL 248 (463)
Q Consensus 172 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L 248 (463)
.||+|||+...++. .+-.-+..+.+|+.|.|.++++.+.+...+....+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57788888777652 122234567788888888888877777777777888888887764 3211 11234677888888
Q ss_pred eccCCCCCCCCchh-hhc-CCCCCEEEeeCCCCC---CCCchhhhCCCCCcEeecCCCCC-CCCCchhhhCCCCCCEEec
Q 044868 249 DLSSNSLTGSIPDS-IDK-LSLLAFMALSNNKLT---GNFPKGLAKLQSLQYFLMDDNPM-FIPLPVEFGILVKLQELRL 322 (463)
Q Consensus 249 ~L~~n~l~~~~p~~-l~~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~l~~l~~L~~L~L 322 (463)
+++.+.++...-.. +.. -++|+.|+++++.-. ..+..-..++++|.+|||++|.. +......+..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888765432211 111 246777888776321 12222345788888899888753 3333445677888999999
Q ss_pred cCCCCCCCCcc---ccCCCCcccEEEcccccCCCCchhhhCCCCCCC
Q 044868 323 ANSGYSGSIPP---SFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIY 366 (463)
Q Consensus 323 ~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 366 (463)
+.|.. .+|+ .+...|+|.+||+.++-=.+...-....+++|+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 88864 4555 345678999999887644323222233344444
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=8.8e-07 Score=81.22 Aligned_cols=185 Identities=19% Similarity=0.141 Sum_probs=96.1
Q ss_pred CCCCCCCEEEcccCcCCCCCchh----hcCCCCcCEEeccCCCCCCCCchh-------------hhcCCCCCEEEeeCCC
Q 044868 216 GNLRNLVGLDLSYNSLTGSIPST----IGQLGMLQKLDLSSNSLTGSIPDS-------------IDKLSLLAFMALSNNK 278 (463)
Q Consensus 216 ~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~L~~n~ 278 (463)
.+++.|+..+|+.|.+....|+. +++-+.|++|.+++|.+...--.- ..+-|.|+......|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34555555555555554433332 234455555555555543111111 1234667777777777
Q ss_pred CCCCCch-----hhhCCCCCcEeecCCCCCCCCCc-----hhhhCCCCCCEEeccCCCCCCCC----ccccCCCCcccEE
Q 044868 279 LTGNFPK-----GLAKLQSLQYFLMDDNPMFIPLP-----VEFGILVKLQELRLANSGYSGSI----PPSFSQLNNLSTL 344 (463)
Q Consensus 279 l~~~~p~-----~l~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L 344 (463)
+.. .+. .+..-.+|+++.+..|.|...-- ..+..+.+|+.|||.+|-++-.. ...+...+.|+.|
T Consensus 169 len-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 652 221 12333567777777776643311 12344567777777777776432 2234455667777
Q ss_pred EcccccCCCCchhh----hC--CCCCCCeEEccCCCCCccCCCCc-------hhhhccCCeEeccCCCCCC
Q 044868 345 SLQNNRLTGEIPVV----FG--SLSHIYHLNLSRNFLDGVVPFNS-------SFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 345 ~Ls~N~l~~~~p~~----l~--~l~~L~~L~L~~N~l~~~~p~~~-------~~l~~L~~~L~L~~N~~~c 402 (463)
.+.+|-++..-... +. ..++|..|...+|...+.+-..+ ..++-| ..+.+.||++.-
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L-~~le~ngNr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLL-VDLERNGNRIKE 317 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHH-HHHHHccCcchh
Confidence 77777776432222 11 24667777777777665433211 123334 455666776543
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=5.2e-08 Score=80.26 Aligned_cols=86 Identities=27% Similarity=0.388 Sum_probs=49.6
Q ss_pred CCCCCCcEEEeecCCCCCCCccccC-CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 168 SSLKFLQILTLSQNRLNGQIPVKIF-SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
.....|+..+|++|.+. .+|..|. ..+.++.|++++|.++ .+|.++..++.|+.|++++|.+. ..|..+..+.++.
T Consensus 50 ~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLD 126 (177)
T ss_pred hCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHH
Confidence 33444555566666665 4454444 2345666666666665 55666666666666666666665 4455555566666
Q ss_pred EEeccCCCCC
Q 044868 247 KLDLSSNSLT 256 (463)
Q Consensus 247 ~L~L~~n~l~ 256 (463)
.|+..+|.+.
T Consensus 127 ~Lds~~na~~ 136 (177)
T KOG4579|consen 127 MLDSPENARA 136 (177)
T ss_pred HhcCCCCccc
Confidence 6666666554
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.3e-05 Score=77.62 Aligned_cols=136 Identities=16% Similarity=0.235 Sum_probs=77.8
Q ss_pred cCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 167 ISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 167 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.--..+|..+ .++|++|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 555788999999999887 6662 2 2469999998855434666554 25788888888732224443 467
Q ss_pred EEeccCCCCC--CCCchhhhcCCCCCEEEeeCCCCC--CCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEec
Q 044868 247 KLDLSSNSLT--GSIPDSIDKLSLLAFMALSNNKLT--GNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRL 322 (463)
Q Consensus 247 ~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 322 (463)
.|++..+... +.+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|.... .|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEe
Confidence 7777665443 1222 24556666432211 011110 11467777777766432 222222 46777777
Q ss_pred cCC
Q 044868 323 ANS 325 (463)
Q Consensus 323 ~~n 325 (463)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 655
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=9.9e-06 Score=54.02 Aligned_cols=36 Identities=39% Similarity=0.618 Sum_probs=21.3
Q ss_pred cccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC
Q 044868 340 NLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 340 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 376 (463)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 45555666666666666666665
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.3e-05 Score=53.39 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=12.3
Q ss_pred CcEEEeecCCCCCCCccccCCCCCCcEEEcccCCC
Q 044868 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLL 207 (463)
Q Consensus 173 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 207 (463)
|++|++++|+++ .+|..+.++++|++|++++|++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 333444444333 2333333344444444444333
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=7e-06 Score=87.71 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=93.4
Q ss_pred CCccEEEccCCCCCCCCCchhcCC-CCCCcEEEeecCCCCCC-CccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCE
Q 044868 146 SSLQQLSLRSNPALVGPIPPQISS-LKFLQILTLSQNRLNGQ-IPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVG 223 (463)
Q Consensus 146 ~~L~~L~Ls~n~~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 223 (463)
.+|++||+++...+...-|..++. +|.|++|.+.+-.+... +-....++++|..||+|+.+++ .+ ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHH
Confidence 359999998885555555666654 79999999988766432 2223346889999999998887 33 66788889988
Q ss_pred EEcccCcCCC-CCchhhcCCCCcCEEeccCCCCCCCC--c----hhhhcCCCCCEEEeeCCCCCCCC
Q 044868 224 LDLSYNSLTG-SIPSTIGQLGMLQKLDLSSNSLTGSI--P----DSIDKLSLLAFMALSNNKLTGNF 283 (463)
Q Consensus 224 L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~ 283 (463)
|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 8887766552 22335678889999999876554221 1 11124778888888887776544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=8.4e-05 Score=73.73 Aligned_cols=137 Identities=16% Similarity=0.212 Sum_probs=87.9
Q ss_pred cccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccC-CCCCCCchhcCC
Q 044868 139 SADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYN-LLAGTIPVQVGN 217 (463)
Q Consensus 139 ~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~ 217 (463)
.+..+.+ +++|++++| .+. .+|. + -.+|++|.++++.--..+|..+ ..+|++|++++| .+. .+|.
T Consensus 47 r~~~~~~--l~~L~Is~c-~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~---- 112 (426)
T PRK15386 47 QIEEARA--SGRLYIKDC-DIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE---- 112 (426)
T ss_pred HHHHhcC--CCEEEeCCC-CCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc----
Confidence 3455666 999999998 554 4452 1 2469999999865444667655 358999999998 444 5554
Q ss_pred CCCCCEEEcccCcCC--CCCchhhcCCCCcCEEeccCCCCC--CCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCC
Q 044868 218 LRNLVGLDLSYNSLT--GSIPSTIGQLGMLQKLDLSSNSLT--GSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSL 293 (463)
Q Consensus 218 l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 293 (463)
+|+.|++..+... +.+|. +|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|
T Consensus 113 --sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SL 179 (426)
T PRK15386 113 --SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESL 179 (426)
T ss_pred --ccceEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccC
Confidence 5788888776543 23333 5677777543211 111211 1258999999988765 3444333 588
Q ss_pred cEeecCCCC
Q 044868 294 QYFLMDDNP 302 (463)
Q Consensus 294 ~~L~L~~n~ 302 (463)
+.|+++.+.
T Consensus 180 k~L~ls~n~ 188 (426)
T PRK15386 180 QSITLHIEQ 188 (426)
T ss_pred cEEEecccc
Confidence 999988763
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.5e-05 Score=85.28 Aligned_cols=139 Identities=18% Similarity=0.133 Sum_probs=91.3
Q ss_pred CCCCCEEEcccCCCCCccccccccc-ccCCCCccEEEccCCCCCCC-CCchhcCCCCCCcEEEeecCCCCCCCccccCCC
Q 044868 117 LSYLQSVFFFSCFTHTKTTLSVSAD-RLYNSSLQQLSLRSNPALVG-PIPPQISSLKFLQILTLSQNRLNGQIPVKIFSL 194 (463)
Q Consensus 117 l~~L~~L~L~~~~~~~~~~ip~~~~-~l~~~~L~~L~Ls~n~~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 194 (463)
-.+|++||+++......+ =|..++ .+|. |+.|.+++- .+.. ..-....++++|..||+++++++ .+ ..++++
T Consensus 121 r~nL~~LdI~G~~~~s~~-W~~kig~~LPs--L~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNG-WPKKIGTMLPS--LRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRL 194 (699)
T ss_pred HHhhhhcCccccchhhcc-HHHHHhhhCcc--cceEEecCc-eecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhcc
Confidence 367888888875432111 122222 3444 999999886 4432 22334578899999999999887 33 567788
Q ss_pred CCCcEEEcccCCCCC-CCchhcCCCCCCCEEEcccCcCCCCC--c----hhhcCCCCcCEEeccCCCCCCCCch
Q 044868 195 NSLVHLDLSYNLLAG-TIPVQVGNLRNLVGLDLSYNSLTGSI--P----STIGQLGMLQKLDLSSNSLTGSIPD 261 (463)
Q Consensus 195 ~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~p~ 261 (463)
++|+.|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+++|+.||.+++.+.+.+-+
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 999998888766653 22245678999999999887655211 1 1113578999999998877754433
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.61 E-value=9.5e-05 Score=65.33 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=34.3
Q ss_pred hCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCC-ccccCCCCcccEEEcccccCCCCc---hhhhCCCC
Q 044868 288 AKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSI-PPSFSQLNNLSTLSLQNNRLTGEI---PVVFGSLS 363 (463)
Q Consensus 288 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~ 363 (463)
..++.|.+|.+.+|.|+...|.--..+++|+.|.|.+|.+.... -.-+..+|+|++|.+-+|..+..- -..+..+|
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp 140 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLP 140 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecC
Confidence 33444444444444444333333333344444444444443210 112334455555555555444211 11233445
Q ss_pred CCCeEEcc
Q 044868 364 HIYHLNLS 371 (463)
Q Consensus 364 ~L~~L~L~ 371 (463)
+|+.||.+
T Consensus 141 ~l~~LDF~ 148 (233)
T KOG1644|consen 141 SLRTLDFQ 148 (233)
T ss_pred cceEeehh
Confidence 55555544
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.00014 Score=64.23 Aligned_cols=39 Identities=33% Similarity=0.336 Sum_probs=15.6
Q ss_pred CCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCC
Q 044868 241 QLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKL 279 (463)
Q Consensus 241 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 279 (463)
.+++|.+|.+.+|+|+..-|.--..+++|+.|.+.+|.+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 334444444444444433332222333444444444433
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.45 E-value=4.6e-06 Score=80.89 Aligned_cols=287 Identities=16% Similarity=0.096 Sum_probs=162.6
Q ss_pred CCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhc-CCCCCCcEEEeecCC-CCCCCcccc-CCC
Q 044868 118 SYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQI-SSLKFLQILTLSQNR-LNGQIPVKI-FSL 194 (463)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~p~~l-~~l 194 (463)
..|+.|.+.+|.......+-....++++ +++|++.++..++...-.++ ..+++|++|+|..|. ++...-..+ ..+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~Cpn--IehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPN--IEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCc--hhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 4678888888765444445455566666 88888888844444333333 357888888888743 332222222 257
Q ss_pred CCCcEEEcccCC-CCC-CCchhcCCCCCCCEEEcccCcCCCCCchhh----cCCCCcCEEeccCC-CCCCCC-chhhhcC
Q 044868 195 NSLVHLDLSYNL-LAG-TIPVQVGNLRNLVGLDLSYNSLTGSIPSTI----GQLGMLQKLDLSSN-SLTGSI-PDSIDKL 266 (463)
Q Consensus 195 ~~L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n-~l~~~~-p~~l~~l 266 (463)
++|++|+++.+. +++ .+-....++.+++.+.+.+|.-.+ -+.+ +....+.++++..+ .+++.. -..-...
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 888888888875 333 122234566667777666543221 1122 23344555665444 333221 1112345
Q ss_pred CCCCEEEeeCCCCCCC-Cchh-hhCCCCCcEeecCCCCCCCCC-chhh-hCCCCCCEEeccCCCCCC--CCccccCCCCc
Q 044868 267 SLLAFMALSNNKLTGN-FPKG-LAKLQSLQYFLMDDNPMFIPL-PVEF-GILVKLQELRLANSGYSG--SIPPSFSQLNN 340 (463)
Q Consensus 267 ~~L~~L~L~~n~l~~~-~p~~-l~~l~~L~~L~L~~n~l~~~~-~~~l-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~ 340 (463)
..|+.|+.+++...+. .-.. ..+..+|+.|.++.++.-+.. ...+ .+.+.|+.+++..+...- .+...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 6788888877654322 1122 235678888888887642221 1112 356788888888876542 12222346788
Q ss_pred ccEEEcccccCCCCc-----hhhhCCCCCCCeEEccCCCCC-ccCCCCchhhhccCCeEeccCCCCCCCCccccc
Q 044868 341 LSTLSLQNNRLTGEI-----PVVFGSLSHIYHLNLSRNFLD-GVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAY 409 (463)
Q Consensus 341 L~~L~Ls~N~l~~~~-----p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~ 409 (463)
|+.|.++++...... ...-..+..|+.+.|+++... ...-..+...+.+ +.+++.++......+...|
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L-eri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL-ERIELIDCQDVTKEAISRF 447 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc-ceeeeechhhhhhhhhHHH
Confidence 999999988764222 112234567888888888654 2333445555667 6778777665444444333
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=9.6e-05 Score=67.90 Aligned_cols=93 Identities=29% Similarity=0.331 Sum_probs=50.7
Q ss_pred CCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccC--CCCCCCchhcCCCCCCCEEEcccCcCCCCCch
Q 044868 160 VGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYN--LLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPS 237 (463)
Q Consensus 160 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 237 (463)
.|.+..-...+..|+.|++.+..++ .+- .+-.+++|++|.++.| ++.+.++.....+++|++|++++|++.. +.
T Consensus 32 ~g~~~gl~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--ls 107 (260)
T KOG2739|consen 32 AGKLGGLTDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LS 107 (260)
T ss_pred CCCcccccccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cc
Confidence 3344444445556666666666555 111 2345667777777777 4554444444455777777777776651 22
Q ss_pred h---hcCCCCcCEEeccCCCCC
Q 044868 238 T---IGQLGMLQKLDLSSNSLT 256 (463)
Q Consensus 238 ~---l~~l~~L~~L~L~~n~l~ 256 (463)
+ +..+.+|..|++.+|..+
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred ccchhhhhcchhhhhcccCCcc
Confidence 2 234445556666655444
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.29 E-value=1.5e-05 Score=77.51 Aligned_cols=258 Identities=17% Similarity=0.072 Sum_probs=159.3
Q ss_pred ccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchh-cCCCCCCcEEEeecCCC-CCC-Cccc
Q 044868 114 IFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQ-ISSLKFLQILTLSQNRL-NGQ-IPVK 190 (463)
Q Consensus 114 l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~-l~~l~~L~~L~L~~n~l-~~~-~p~~ 190 (463)
..+++++++|++.+|........-..-..+++ |++|++..|..++...-.. ...+++|++|+++++.- ++. +...
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~--l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRK--LRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcch--hhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 34689999999999875433334444445666 9999999974555443332 35689999999998853 331 1223
Q ss_pred cCCCCCCcEEEcccCCCCCCCchhc----CCCCCCCEEEcccCc-CCCCC-chhhcCCCCcCEEeccCCCCCCCC--chh
Q 044868 191 IFSLNSLVHLDLSYNLLAGTIPVQV----GNLRNLVGLDLSYNS-LTGSI-PSTIGQLGMLQKLDLSSNSLTGSI--PDS 262 (463)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~--p~~ 262 (463)
..++..++.+.+++|.=.+ -+.+ ..+..+..+++..+. ++..- ...-..+..|+.|+.+++.-.+.. ..-
T Consensus 238 ~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL 315 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL 315 (483)
T ss_pred hccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH
Confidence 4467778888777654221 1111 344556666665553 33211 111234678899998876443221 122
Q ss_pred hhcCCCCCEEEeeCCC-CCCCCchhh-hCCCCCcEeecCCCCCCCC--CchhhhCCCCCCEEeccCCCCCCCC-----cc
Q 044868 263 IDKLSLLAFMALSNNK-LTGNFPKGL-AKLQSLQYFLMDDNPMFIP--LPVEFGILVKLQELRLANSGYSGSI-----PP 333 (463)
Q Consensus 263 l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~-----p~ 333 (463)
..+.++|+.|.++.++ ++..-...+ .+.+.|+.+++.++..... +..--.+++.|+.|.++++...... ..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 3456899999999886 332211223 3567899999888765322 1222246788999999988653211 12
Q ss_pred ccCCCCcccEEEcccccCC-CCchhhhCCCCCCCeEEccCCCC
Q 044868 334 SFSQLNNLSTLSLQNNRLT-GEIPVVFGSLSHIYHLNLSRNFL 375 (463)
Q Consensus 334 ~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l 375 (463)
.-.....|+.+.|+++..+ +..-+.+..+++|+.+++..++-
T Consensus 396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 2245678999999998875 23445667788999999888754
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00044 Score=63.59 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=17.1
Q ss_pred cCCCCCEEEeeCC--CCCCCCchhhhCCCCCcEeecCCCCC
Q 044868 265 KLSLLAFMALSNN--KLTGNFPKGLAKLQSLQYFLMDDNPM 303 (463)
Q Consensus 265 ~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l 303 (463)
.+++|+.|.++.| +..+.++.....+++|+++++++|++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 3445555555555 33333333333334444444444444
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.94 E-value=0.002 Score=53.76 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=1.5
Q ss_pred cccEEEc
Q 044868 340 NLSTLSL 346 (463)
Q Consensus 340 ~L~~L~L 346 (463)
+|+.+.+
T Consensus 104 ~l~~i~~ 110 (129)
T PF13306_consen 104 NLKEINI 110 (129)
T ss_dssp T--EEE-
T ss_pred CceEEEE
Confidence 3333333
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.86 E-value=0.0021 Score=53.63 Aligned_cols=84 Identities=11% Similarity=0.160 Sum_probs=32.7
Q ss_pred ccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCC
Q 044868 190 KIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLL 269 (463)
Q Consensus 190 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 269 (463)
.|.++++|+.+.+.. .+...-...|.++++|+.+++..+ +...-...|.++++|+.+.+.+ .+.......+...++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555666666653 343233344555555666665543 3322333444554555555543 2221222334445555
Q ss_pred CEEEeeC
Q 044868 270 AFMALSN 276 (463)
Q Consensus 270 ~~L~L~~ 276 (463)
+.+++..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5555543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.68 E-value=0.00027 Score=73.09 Aligned_cols=127 Identities=24% Similarity=0.158 Sum_probs=69.4
Q ss_pred ccEEEccCCCCCCCC-CchhcCCCCCCcEEEeecC-CCCCCCc----cccCCCCCCcEEEcccCC-CCCCCchhcC-CCC
Q 044868 148 LQQLSLRSNPALVGP-IPPQISSLKFLQILTLSQN-RLNGQIP----VKIFSLNSLVHLDLSYNL-LAGTIPVQVG-NLR 219 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-~l~ 219 (463)
|+.|.+.++..+... +-......++|+.|+++++ ......+ .....+++|+.|+++++. ++...-..+. .++
T Consensus 190 L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~ 269 (482)
T KOG1947|consen 190 LKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP 269 (482)
T ss_pred hhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCC
Confidence 777777776333321 2234566778888888763 2111111 122346778888888777 5433333333 367
Q ss_pred CCCEEEcccCc-CCCC-CchhhcCCCCcCEEeccCCCCCCC--CchhhhcCCCCCEEEe
Q 044868 220 NLVGLDLSYNS-LTGS-IPSTIGQLGMLQKLDLSSNSLTGS--IPDSIDKLSLLAFMAL 274 (463)
Q Consensus 220 ~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L 274 (463)
+|++|.+.++. ++.. +-.....+++|++|+++++..... +.....++++|+.|.+
T Consensus 270 ~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 270 NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 88888877666 4432 222234567788888887654311 2223344555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.00024 Score=65.84 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCc--hhhhCCCCCcEee
Q 044868 220 NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFP--KGLAKLQSLQYFL 297 (463)
Q Consensus 220 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~ 297 (463)
+.+.|+..++.++.+ .....++.|+.|.|+-|.|+..- .+..+++|++|+|..|.|.. +. .-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 444444444444421 12234444555555555444221 13344444444444444431 11 1133444444444
Q ss_pred cCCCCCCC
Q 044868 298 MDDNPMFI 305 (463)
Q Consensus 298 L~~n~l~~ 305 (463)
|..|.-.|
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 44444433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.25 E-value=0.00071 Score=69.92 Aligned_cols=133 Identities=26% Similarity=0.175 Sum_probs=81.4
Q ss_pred CCCCCCcEEEeecCCCCCC--CccccCCCCCCcEEEcccC-CCCCCCc----hhcCCCCCCCEEEcccCc-CCCCCchhh
Q 044868 168 SSLKFLQILTLSQNRLNGQ--IPVKIFSLNSLVHLDLSYN-LLAGTIP----VQVGNLRNLVGLDLSYNS-LTGSIPSTI 239 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~L~~n~-l~~~~p~~l 239 (463)
...+.|+.|.+..+.-... +-.....++.|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478888888887754322 2234456889999999873 2211111 233456889999998887 554433344
Q ss_pred cC-CCCcCEEeccCCC-CCCCC-chhhhcCCCCCEEEeeCCCCCCC--CchhhhCCCCCcEeecCC
Q 044868 240 GQ-LGMLQKLDLSSNS-LTGSI-PDSIDKLSLLAFMALSNNKLTGN--FPKGLAKLQSLQYFLMDD 300 (463)
Q Consensus 240 ~~-l~~L~~L~L~~n~-l~~~~-p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~ 300 (463)
.. +++|++|.+.++. +++.. -.....++.|++|+++.+..... +.....++++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 33 7789999977776 55432 23344577899999998865321 222344566666655433
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.00033 Score=64.92 Aligned_cols=96 Identities=24% Similarity=0.265 Sum_probs=55.5
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCc--hhcCCCCCCCEEE
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIP--VQVGNLRNLVGLD 225 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~ 225 (463)
.+.|+..++ .+... ....+|+.|++|.|+-|+|+..- .+..|++|++|+|..|.|.. +. ..+.++++|+.|.
T Consensus 21 vkKLNcwg~-~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 21 VKKLNCWGC-GLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred hhhhcccCC-CccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 555666666 44432 12356777777777777776322 25567777777777777652 22 3346677777777
Q ss_pred cccCcCCCCCch-----hhcCCCCcCEEe
Q 044868 226 LSYNSLTGSIPS-----TIGQLGMLQKLD 249 (463)
Q Consensus 226 L~~n~l~~~~p~-----~l~~l~~L~~L~ 249 (463)
|..|.-.|.-+. .+.-+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 776665544332 234455666554
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.94 E-value=8e-05 Score=76.38 Aligned_cols=182 Identities=27% Similarity=0.230 Sum_probs=100.7
Q ss_pred CCCcEEEeecCCCCCCCcc----ccCCCCCCcEEEcccCCCCCCCc----hhcCCC-CCCCEEEcccCcCCC----CCch
Q 044868 171 KFLQILTLSQNRLNGQIPV----KIFSLNSLVHLDLSYNLLAGTIP----VQVGNL-RNLVGLDLSYNSLTG----SIPS 237 (463)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~----~~p~ 237 (463)
..+..|.|.+|.+...... .+.....|+.|++++|.+.+.-- ..+... ..+++|++..|.++. .+..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 4478888888888744333 34457788888888888874221 222232 456777777777663 2445
Q ss_pred hhcCCCCcCEEeccCCCCCC----CCchhhh----cCCCCCEEEeeCCCCCCCC----chhhhCCCC-CcEeecCCCCCC
Q 044868 238 TIGQLGMLQKLDLSSNSLTG----SIPDSID----KLSLLAFMALSNNKLTGNF----PKGLAKLQS-LQYFLMDDNPMF 304 (463)
Q Consensus 238 ~l~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~L~~n~l~ 304 (463)
.+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +.++++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 55556777888888777641 1222222 3556666777666665211 112333344 555666666654
Q ss_pred CCCc----hhhhCC-CCCCEEeccCCCCCCCCc----cccCCCCcccEEEcccccCC
Q 044868 305 IPLP----VEFGIL-VKLQELRLANSGYSGSIP----PSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 305 ~~~~----~~l~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~ 352 (463)
+..- ..+..+ ..++.++++.|.+++... ..+..++.++++.+++|.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3311 122233 445666666666654322 23334455666666666655
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.79 E-value=6.5e-05 Score=77.01 Aligned_cols=203 Identities=24% Similarity=0.190 Sum_probs=137.6
Q ss_pred ccEEEccCCCCCCCCCc----hhcCCCCCCcEEEeecCCCCCCCcccc----CCC-CCCcEEEcccCCCCC----CCchh
Q 044868 148 LQQLSLRSNPALVGPIP----PQISSLKFLQILTLSQNRLNGQIPVKI----FSL-NSLVHLDLSYNLLAG----TIPVQ 214 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~n~l~~----~~p~~ 214 (463)
+.+|.|.+| .+..... ..+.....|+.|++++|.+.+.--..+ ... ..|++|++..|.+++ .+.+.
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 888999998 6655433 345778899999999999874322222 222 467888888888875 34556
Q ss_pred cCCCCCCCEEEcccCcCCC----CCchhhc----CCCCcCEEeccCCCCCCCC----chhhhcCCC-CCEEEeeCCCCCC
Q 044868 215 VGNLRNLVGLDLSYNSLTG----SIPSTIG----QLGMLQKLDLSSNSLTGSI----PDSIDKLSL-LAFMALSNNKLTG 281 (463)
Q Consensus 215 l~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~L~~n~l~~~~----p~~l~~l~~-L~~L~L~~n~l~~ 281 (463)
+.....++.++++.|.+.. .++..+. ...++++|++.+|.++... ...+...+. +..|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6678899999999998741 1233333 4678999999999887322 223444455 7779999998874
Q ss_pred CC----chhhhCC-CCCcEeecCCCCCCCCCch----hhhCCCCCCEEeccCCCCCCCCc----cccCCCCcccEEEccc
Q 044868 282 NF----PKGLAKL-QSLQYFLMDDNPMFIPLPV----EFGILVKLQELRLANSGYSGSIP----PSFSQLNNLSTLSLQN 348 (463)
Q Consensus 282 ~~----p~~l~~l-~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~ 348 (463)
.. .+.+..+ ..+++++++.|.+...... .+..++.++++.++.|.+.+... ..+.....+.++.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 32 2334455 6789999999999776543 34566789999999999875322 2223334556666665
Q ss_pred ccC
Q 044868 349 NRL 351 (463)
Q Consensus 349 N~l 351 (463)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.17 E-value=0.011 Score=32.76 Aligned_cols=19 Identities=47% Similarity=0.688 Sum_probs=10.7
Q ss_pred ccEEEcccccCCCCchhhhC
Q 044868 341 LSTLSLQNNRLTGEIPVVFG 360 (463)
Q Consensus 341 L~~L~Ls~N~l~~~~p~~l~ 360 (463)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666665 5555443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.69 E-value=0.013 Score=32.56 Aligned_cols=11 Identities=55% Similarity=0.371 Sum_probs=4.1
Q ss_pred cEEEcccCCCC
Q 044868 198 VHLDLSYNLLA 208 (463)
Q Consensus 198 ~~L~Ls~n~l~ 208 (463)
++|++++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.27 E-value=0.098 Score=26.93 Aligned_cols=11 Identities=73% Similarity=0.948 Sum_probs=3.5
Q ss_pred ccEEEcccccC
Q 044868 341 LSTLSLQNNRL 351 (463)
Q Consensus 341 L~~L~Ls~N~l 351 (463)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=91.23 E-value=0.1 Score=62.67 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=29.9
Q ss_pred EccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCccccccc
Q 044868 369 NLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAYSV 411 (463)
Q Consensus 369 ~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~~~ 411 (463)
||++|+|+...+..|..+++| +.|+|++|||.|+|...||..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL-~~LdLsgNPw~CDC~L~WL~~ 42 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNL-SEIDLSGNPFECDCGLARLPR 42 (2740)
T ss_pred CCCCCcCCccChHHhccCCCc-eEEEeeCCccccccccHHHHH
Confidence 467777776555566666777 788888888888888776443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.97 E-value=0.0071 Score=54.89 Aligned_cols=87 Identities=26% Similarity=0.306 Sum_probs=46.2
Q ss_pred hcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCc
Q 044868 166 QISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGML 245 (463)
Q Consensus 166 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 245 (463)
++.....-+.||++.|++. .+-..+.-++.|..|+++.|++. ..|..++.+..++.+++..|..+ ..|.+++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 3445555556666655554 22233444555555666655554 45555555555555555555554 455555555555
Q ss_pred CEEeccCCCC
Q 044868 246 QKLDLSSNSL 255 (463)
Q Consensus 246 ~~L~L~~n~l 255 (463)
+++++..|.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 5555555543
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.96 E-value=0.45 Score=48.74 Aligned_cols=110 Identities=24% Similarity=0.214 Sum_probs=52.9
Q ss_pred CCcccEEEcccccCCCC--chhhhCCCCCCCeEEccCC--CCCccCCCCchhh--hccCCeEeccCCCCCCCCcccc--c
Q 044868 338 LNNLSTLSLQNNRLTGE--IPVVFGSLSHIYHLNLSRN--FLDGVVPFNSSFL--KRLGRNLDLSGNPGLCLNPAEA--Y 409 (463)
Q Consensus 338 l~~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l--~~L~~~L~L~~N~~~c~~~~~~--~ 409 (463)
.+.+..++|++|++... +...-...|+|+.|+|++| .+... .++..+ ..+ ++|.+.|||+ |..-... +
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~L-eel~l~GNPl-c~tf~~~s~y 292 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPL-EELVLEGNPL-CTTFSDRSEY 292 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCH-HHeeecCCcc-ccchhhhHHH
Confidence 34555555666655421 1111223466777777777 33211 112222 234 6788888884 5543332 3
Q ss_pred ccccCCccccCCCCCCCCCcccc---cccCCCCCCcceehhhhHH
Q 044868 410 SVKIGIGVSICGSNKNGSLIKPV---KKSQAPRGLQKSFSLFPAL 451 (463)
Q Consensus 410 ~~~~~~~~~~C~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 451 (463)
...+....+.|.-+.......++ ............|+....+
T Consensus 293 v~~i~~~FPKL~~LDG~ev~~~~~d~~~~~~~~p~k~~ff~~~~l 337 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLDGVEVQPEVIDINASETPMPCKQNFFGSEEL 337 (585)
T ss_pred HHHHHHhcchheeecCcccCccccccccccCCcchhhcccCchHH
Confidence 34444455556555554444433 2223444555555544433
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.50 E-value=0.43 Score=27.35 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=5.9
Q ss_pred CCcEEEeecCCCC
Q 044868 172 FLQILTLSQNRLN 184 (463)
Q Consensus 172 ~L~~L~L~~n~l~ 184 (463)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.50 E-value=0.43 Score=27.35 Aligned_cols=13 Identities=46% Similarity=0.534 Sum_probs=5.9
Q ss_pred CCcEEEeecCCCC
Q 044868 172 FLQILTLSQNRLN 184 (463)
Q Consensus 172 ~L~~L~L~~n~l~ 184 (463)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.62 E-value=0.015 Score=52.77 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=37.7
Q ss_pred CCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEee
Q 044868 218 LRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFL 297 (463)
Q Consensus 218 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 297 (463)
....+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..+.....+..+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344444444444433 12223333444555555555444 34444444444444444444444 4444455555555555
Q ss_pred cCCCC
Q 044868 298 MDDNP 302 (463)
Q Consensus 298 L~~n~ 302 (463)
+.+|.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 54444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.24 E-value=0.64 Score=26.63 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=6.3
Q ss_pred cccEEEcccccCC
Q 044868 340 NLSTLSLQNNRLT 352 (463)
Q Consensus 340 ~L~~L~Ls~N~l~ 352 (463)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.24 E-value=0.64 Score=26.63 Aligned_cols=13 Identities=54% Similarity=0.790 Sum_probs=6.3
Q ss_pred cccEEEcccccCC
Q 044868 340 NLSTLSLQNNRLT 352 (463)
Q Consensus 340 ~L~~L~Ls~N~l~ 352 (463)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.10 E-value=0.26 Score=27.74 Aligned_cols=15 Identities=53% Similarity=0.729 Sum_probs=6.8
Q ss_pred CcccEEEcccccCCC
Q 044868 339 NNLSTLSLQNNRLTG 353 (463)
Q Consensus 339 ~~L~~L~Ls~N~l~~ 353 (463)
++|++|+|++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 445555555555543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=0.31 Score=43.60 Aligned_cols=80 Identities=23% Similarity=0.166 Sum_probs=33.5
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCC-chhhc-CCCCcCEEeccCC-CCCCCCchhhhcCCCCCEE
Q 044868 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSI-PSTIG-QLGMLQKLDLSSN-SLTGSIPDSIDKLSLLAFM 272 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L 272 (463)
.++.+|-++..|..+--+.+.+++.++.|.+.++.--+.. -+.++ -.++|+.|++++| +||..--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4455555555544433344444455555544444321100 00011 1245555555544 3443333344444555544
Q ss_pred Eee
Q 044868 273 ALS 275 (463)
Q Consensus 273 ~L~ 275 (463)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.95 E-value=0.25 Score=44.12 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=47.0
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
.|..+|-++. .+.+.=-..+.+++.++.|.+.+|.....-.+ ..++. ..++|+.|++++|..++..--..+..
T Consensus 102 ~IeaVDAsds-----~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L-~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDS-----SIMYEGLEHLRDLRSIKSLSLANCKYFDDWCL-ERLGG-LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCc-----hHHHHHHHHHhccchhhhheeccccchhhHHH-HHhcc-cccchheeeccCCCeechhHHHHHHH
Confidence 5666665432 22222224455677777787777753221111 11222 22358888888776666655556677
Q ss_pred CCCCcEEEeec
Q 044868 170 LKFLQILTLSQ 180 (463)
Q Consensus 170 l~~L~~L~L~~ 180 (463)
+++|+.|.+.+
T Consensus 175 lknLr~L~l~~ 185 (221)
T KOG3864|consen 175 LKNLRRLHLYD 185 (221)
T ss_pred hhhhHHHHhcC
Confidence 77777777654
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.02 E-value=7.3 Score=39.51 Aligned_cols=85 Identities=19% Similarity=0.060 Sum_probs=42.3
Q ss_pred CCcEeecCCCCCCCCCchhh--hCCCCCCEEeccCCCCCC-CCcccc--------CCCCcccEEEcccccCCCCchhh--
Q 044868 292 SLQYFLMDDNPMFIPLPVEF--GILVKLQELRLANSGYSG-SIPPSF--------SQLNNLSTLSLQNNRLTGEIPVV-- 358 (463)
Q Consensus 292 ~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~-~~p~~l--------~~l~~L~~L~Ls~N~l~~~~p~~-- 358 (463)
.+++|.+..|.+.+..-... ..-++.+.+++.+-.-.. .++... ...--+..+.++.|.+....-..
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 36777777777765543322 233455555554332100 001000 01123566677777776333222
Q ss_pred -hCCCCCCCeEEccCCCCC
Q 044868 359 -FGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 359 -l~~l~~L~~L~L~~N~l~ 376 (463)
+..-+.+..|++++|...
T Consensus 435 ~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hhccCcccccccccCCCcc
Confidence 233466788888887654
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.96 E-value=3.4 Score=23.90 Aligned_cols=13 Identities=46% Similarity=0.703 Sum_probs=6.9
Q ss_pred cccEEEcccccCC
Q 044868 340 NLSTLSLQNNRLT 352 (463)
Q Consensus 340 ~L~~L~Ls~N~l~ 352 (463)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4455555555555
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.86 E-value=5.7 Score=22.96 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=10.5
Q ss_pred CCCCeEEccCCCCC
Q 044868 363 SHIYHLNLSRNFLD 376 (463)
Q Consensus 363 ~~L~~L~L~~N~l~ 376 (463)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777888888776
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.78 E-value=7.9 Score=22.62 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=9.6
Q ss_pred CCCCeEEccCCCCC
Q 044868 363 SHIYHLNLSRNFLD 376 (463)
Q Consensus 363 ~~L~~L~L~~N~l~ 376 (463)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777765
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.59 E-value=12 Score=38.70 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCCCCcEeecCCCCCCCCC--chhhhCCCCCCEEeccCC--CCCCCCccccC--CCCcccEEEcccccCCCC
Q 044868 289 KLQSLQYFLMDDNPMFIPL--PVEFGILVKLQELRLANS--GYSGSIPPSFS--QLNNLSTLSLQNNRLTGE 354 (463)
Q Consensus 289 ~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n--~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ 354 (463)
+.+.+..+.|++|++.... ..--...++|+.|+|++| .+.. ..++. +...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 4566777778888774321 111233467777777777 3321 11222 224567777777777543
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.73 E-value=23 Score=20.06 Aligned_cols=10 Identities=30% Similarity=0.474 Sum_probs=6.1
Q ss_pred ccEEEccCCC
Q 044868 148 LQQLSLRSNP 157 (463)
Q Consensus 148 L~~L~Ls~n~ 157 (463)
|++|+|++|.
T Consensus 4 L~~L~l~~C~ 13 (26)
T smart00367 4 LRELDLSGCT 13 (26)
T ss_pred CCEeCCCCCC
Confidence 6666666663
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.84 E-value=54 Score=40.94 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=22.4
Q ss_pred EcccccCCCCchhhhCCCCCCCeEEccCCCCCccC
Q 044868 345 SLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVV 379 (463)
Q Consensus 345 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 379 (463)
||++|+|+...+..|..+++|+.|+|++|.+....
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC 35 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDC 35 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccc
Confidence 46667776444456666777777777777776543
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=33.33 E-value=94 Score=31.88 Aligned_cols=249 Identities=18% Similarity=0.082 Sum_probs=125.7
Q ss_pred CCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccC---CCCCCcEEEcccCCCCCCCchhcC---CCC
Q 044868 146 SSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIF---SLNSLVHLDLSYNLLAGTIPVQVG---NLR 219 (463)
Q Consensus 146 ~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~~p~~l~---~l~ 219 (463)
+.+++++++.| .+....|..+..=.+ -+.++.|..+...-..+. .-..+.+++++.|.....+|..+. .-.
T Consensus 165 pr~r~~dls~n-pi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPN-PIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCC-cccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 45788888888 565555554432111 156666666532211111 123577888888888777775542 223
Q ss_pred CCCEEEcccCcCC---CCCchhhcCCCCcCEEeccCCCCCC----CC----chhhhcCCCCCEEEeeCCCCCCCCchhhh
Q 044868 220 NLVGLDLSYNSLT---GSIPSTIGQLGMLQKLDLSSNSLTG----SI----PDSIDKLSLLAFMALSNNKLTGNFPKGLA 288 (463)
Q Consensus 220 ~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~----~~----p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 288 (463)
.+++++.+...+. +.-+-..+.-++|+..+++.|..+. ++ -+.+..-.++ +|++..+....+-+..+-
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 4666666655443 1122233445678888887775541 11 2223333455 666665554432222210
Q ss_pred -C-----CCCCcEeecCCCCCCCCC-chhhhCCCCCCEEeccCCCCCCCCccc--cCCCCcccEEEcccccCC-----CC
Q 044868 289 -K-----LQSLQYFLMDDNPMFIPL-PVEFGILVKLQELRLANSGYSGSIPPS--FSQLNNLSTLSLQNNRLT-----GE 354 (463)
Q Consensus 289 -~-----l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~N~l~-----~~ 354 (463)
. -+.=-.+++..|...+.- -..-..=..+++|....|.+.+..-.. ...-+..+.+++..-.-. +.
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~ 400 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSST 400 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccc
Confidence 0 001123444444432211 111111234888999999887765443 234466777777653321 11
Q ss_pred c--hhhh--CCCCCCCeEEccCCCCCccCCCC---chhhhccCCeEeccCCC
Q 044868 355 I--PVVF--GSLSHIYHLNLSRNFLDGVVPFN---SSFLKRLGRNLDLSGNP 399 (463)
Q Consensus 355 ~--p~~l--~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L~~~L~L~~N~ 399 (463)
. +... ....-+..+.++.|.+....... ...-+.+ ..++++||.
T Consensus 401 ~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl-~kldisgn~ 451 (553)
T KOG4242|consen 401 EAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTL-AKLDISGNG 451 (553)
T ss_pred cchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCccc-ccccccCCC
Confidence 1 1110 01123677888888776443322 2222344 788999985
No 96
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=21.70 E-value=31 Score=22.94 Aligned_cols=16 Identities=19% Similarity=0.106 Sum_probs=13.1
Q ss_pred CCCCCCCccccccccc
Q 044868 398 NPGLCLNPAEAYSVKI 413 (463)
Q Consensus 398 N~~~c~~~~~~~~~~~ 413 (463)
|||.|+|...++...+
T Consensus 1 NP~~CdC~l~~~~~w~ 16 (51)
T smart00082 1 NPFICDCELRWLLRWL 16 (51)
T ss_pred CCccCcCCchHHHHHH
Confidence 8999999998866544
Done!