Query 044868
Match_columns 463
No_of_seqs 726 out of 4614
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 13:00:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-45 8.8E-50 357.7 19.1 301 40-406 2-309 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-44 4.4E-49 393.9 21.2 333 42-400 10-380 (768)
3 4eco_A Uncharacterized protein 100.0 4.3E-44 1.5E-48 381.6 21.7 337 41-401 27-501 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.8E-42 6.2E-47 377.0 25.1 314 39-376 264-710 (876)
5 3v47_A TOLL-like receptor 5B a 100.0 9.8E-41 3.3E-45 341.6 23.4 322 74-406 8-413 (455)
6 3rgz_A Protein brassinosteroid 100.0 8.8E-41 3E-45 363.7 22.3 301 90-401 344-717 (768)
7 2id5_A Lingo-1, leucine rich r 100.0 1.3E-38 4.6E-43 328.0 26.4 325 75-410 12-342 (477)
8 3t6q_A CD180 antigen; protein- 100.0 2.7E-37 9.4E-42 327.5 25.8 308 90-410 255-569 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2E-36 6.8E-41 320.8 27.2 150 262-413 419-570 (606)
10 2z7x_B TOLL-like receptor 1, v 100.0 8.7E-36 3E-40 310.2 23.1 300 90-409 46-489 (520)
11 3v47_A TOLL-like receptor 5B a 100.0 2.8E-35 9.5E-40 301.2 22.7 281 118-404 30-387 (455)
12 2z81_A CD282 antigen, TOLL-lik 100.0 5.2E-35 1.8E-39 306.2 24.7 316 75-406 5-515 (549)
13 4fcg_A Uncharacterized protein 100.0 9.8E-36 3.4E-40 291.8 17.7 284 40-376 23-314 (328)
14 4eco_A Uncharacterized protein 100.0 2E-35 6.9E-40 314.7 19.4 295 89-400 249-578 (636)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-34 4.3E-39 304.5 24.2 166 240-409 350-518 (562)
16 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-34 1.3E-38 314.5 27.5 76 335-411 476-570 (844)
17 3t6q_A CD180 antigen; protein- 100.0 5.5E-34 1.9E-38 302.1 27.6 315 76-402 14-414 (606)
18 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-34 1.8E-38 306.3 27.8 271 139-413 324-635 (680)
19 4g8a_A TOLL-like receptor 4; l 100.0 4.1E-34 1.4E-38 303.7 26.2 343 77-430 34-617 (635)
20 2z63_A TOLL-like receptor 4, v 100.0 3.7E-34 1.3E-38 300.9 24.1 146 263-409 392-539 (570)
21 3o6n_A APL1; leucine-rich repe 100.0 2.8E-34 9.4E-39 288.2 22.1 284 108-411 58-362 (390)
22 3oja_B Anopheles plasmodium-re 100.0 4.9E-34 1.7E-38 302.0 23.9 287 108-412 64-369 (597)
23 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-35 5.9E-40 288.2 11.6 235 137-377 69-306 (313)
24 2id5_A Lingo-1, leucine rich r 100.0 9.7E-34 3.3E-38 291.7 24.9 288 109-404 25-312 (477)
25 3j0a_A TOLL-like receptor 5; m 100.0 8.1E-34 2.8E-38 311.9 24.2 311 75-401 15-375 (844)
26 4ecn_A Leucine-rich repeat pro 100.0 1.3E-33 4.4E-38 307.5 22.2 292 89-399 448-787 (876)
27 1xku_A Decorin; proteoglycan, 100.0 1.7E-32 5.7E-37 268.9 27.5 269 118-399 52-330 (330)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-32 5.1E-37 295.0 28.5 313 76-399 6-364 (680)
29 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-33 2.5E-37 288.2 25.2 294 89-402 21-458 (520)
30 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-32 3.9E-37 270.4 24.0 275 109-399 47-331 (332)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-32 7.8E-37 287.3 24.8 294 89-402 52-487 (562)
32 1xku_A Decorin; proteoglycan, 100.0 1.2E-31 4.2E-36 262.8 26.6 269 119-403 32-308 (330)
33 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-32 2E-36 265.4 21.9 268 119-403 34-309 (332)
34 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-32 2.2E-36 286.2 23.9 148 78-235 15-169 (606)
35 4fmz_A Internalin; leucine ric 100.0 1E-30 3.5E-35 257.8 29.3 267 114-405 62-328 (347)
36 2z66_A Variable lymphocyte rec 100.0 1E-32 3.4E-37 267.5 14.3 235 148-408 30-268 (306)
37 4fmz_A Internalin; leucine ric 100.0 1.7E-30 5.7E-35 256.3 28.9 280 90-401 67-346 (347)
38 2z80_A TOLL-like receptor 2, v 100.0 6.3E-32 2.1E-36 267.4 17.3 257 148-406 54-319 (353)
39 3zyi_A Leucine-rich repeat-con 100.0 5.8E-31 2E-35 269.2 23.8 236 171-409 75-311 (452)
40 3zyj_A Leucine-rich repeat-con 100.0 9.5E-31 3.3E-35 266.7 24.8 237 171-410 64-301 (440)
41 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-31 5.2E-36 279.9 18.7 284 108-401 18-423 (549)
42 2z66_A Variable lymphocyte rec 100.0 1.3E-31 4.4E-36 259.7 16.7 226 175-405 11-240 (306)
43 3o6n_A APL1; leucine-rich repe 100.0 9.4E-31 3.2E-35 262.4 20.8 282 105-407 80-380 (390)
44 1o6v_A Internalin A; bacterial 100.0 1.6E-29 5.6E-34 259.4 29.8 282 90-405 69-370 (466)
45 4fcg_A Uncharacterized protein 100.0 1.1E-30 3.9E-35 255.8 20.0 232 147-400 82-313 (328)
46 3oja_B Anopheles plasmodium-re 100.0 3.3E-30 1.1E-34 272.7 24.7 272 116-403 49-339 (597)
47 1o6v_A Internalin A; bacterial 100.0 1.4E-29 4.9E-34 259.9 28.5 262 114-402 108-389 (466)
48 2z63_A TOLL-like receptor 4, v 100.0 3E-30 1E-34 271.2 23.6 303 89-403 28-509 (570)
49 2z80_A TOLL-like receptor 2, v 100.0 5.4E-31 1.8E-35 260.7 15.7 263 109-380 45-318 (353)
50 1ozn_A Reticulon 4 receptor; N 100.0 5.6E-30 1.9E-34 245.7 20.1 234 171-406 32-266 (285)
51 3zyj_A Leucine-rich repeat-con 100.0 1.2E-29 4.1E-34 258.6 23.1 226 148-376 66-292 (440)
52 1ozn_A Reticulon 4 receptor; N 100.0 4.5E-30 1.5E-34 246.3 18.8 232 174-409 14-246 (285)
53 1wwl_A Monocyte differentiatio 100.0 1.6E-31 5.3E-36 260.1 8.1 242 148-401 45-309 (312)
54 3zyi_A Leucine-rich repeat-con 100.0 1.7E-29 5.7E-34 258.4 22.9 228 148-378 77-305 (452)
55 3bz5_A Internalin-J, INLJ; leu 100.0 8.6E-29 3E-33 253.1 25.3 276 89-402 42-332 (457)
56 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-28 4.6E-33 251.7 26.0 275 89-402 64-353 (457)
57 1wwl_A Monocyte differentiatio 100.0 4.1E-31 1.4E-35 257.1 6.0 251 113-378 38-311 (312)
58 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-28 5.4E-33 260.7 23.2 289 109-405 45-559 (635)
59 3o53_A Protein LRIM1, AGAP0063 100.0 1.8E-29 6.3E-34 246.0 9.1 233 148-396 36-270 (317)
60 3oja_A Leucine-rich immune mol 100.0 2.5E-29 8.5E-34 259.3 8.4 244 148-407 36-288 (487)
61 2z62_A TOLL-like receptor 4, v 100.0 9.3E-28 3.2E-32 229.1 17.7 211 171-406 28-242 (276)
62 3o53_A Protein LRIM1, AGAP0063 100.0 2E-29 7E-34 245.7 6.0 245 148-408 12-257 (317)
63 1jl5_A Outer protein YOPM; leu 100.0 1.1E-26 3.9E-31 237.2 25.6 271 90-402 92-410 (454)
64 3oja_A Leucine-rich immune mol 100.0 1.9E-28 6.6E-33 252.7 11.2 226 169-409 32-258 (487)
65 1jl5_A Outer protein YOPM; leu 99.9 1.7E-27 5.9E-32 243.3 18.1 252 90-377 12-291 (454)
66 1p9a_G Platelet glycoprotein I 99.9 6.7E-27 2.3E-31 224.9 19.1 211 167-409 6-216 (290)
67 2o6q_A Variable lymphocyte rec 99.9 2.5E-26 8.4E-31 218.6 22.8 205 173-405 18-222 (270)
68 2z62_A TOLL-like receptor 4, v 99.9 2E-26 6.9E-31 219.8 19.0 221 134-380 20-241 (276)
69 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-29 5.5E-34 258.7 -4.3 279 119-401 86-411 (461)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-25 3.9E-30 237.3 23.6 258 90-402 41-298 (622)
71 2o6q_A Variable lymphocyte rec 99.9 4E-25 1.4E-29 210.2 23.3 204 148-379 18-221 (270)
72 1z7x_W Ribonuclease inhibitor; 99.9 4.6E-29 1.6E-33 255.3 -4.9 303 90-401 29-383 (461)
73 1p9a_G Platelet glycoprotein I 99.9 4.2E-25 1.4E-29 212.3 20.4 203 140-352 6-208 (290)
74 3rfs_A Internalin B, repeat mo 99.9 1.4E-25 4.8E-30 213.6 16.1 209 167-386 37-245 (272)
75 3rfs_A Internalin B, repeat mo 99.9 2.5E-25 8.4E-30 212.0 17.7 211 140-364 37-247 (272)
76 4glp_A Monocyte differentiatio 99.9 2.1E-25 7.1E-30 216.5 15.5 200 171-376 91-307 (310)
77 2ast_B S-phase kinase-associat 99.9 6.3E-26 2.1E-30 222.3 8.4 231 148-383 72-313 (336)
78 2ca6_A RAN GTPase-activating p 99.9 1.6E-26 5.5E-31 231.3 2.6 259 136-398 24-340 (386)
79 2ast_B S-phase kinase-associat 99.9 2.3E-25 8E-30 218.2 10.4 249 148-406 49-311 (336)
80 4glp_A Monocyte differentiatio 99.9 9.3E-25 3.2E-29 212.0 13.8 227 117-353 63-308 (310)
81 2ca6_A RAN GTPase-activating p 99.9 3.7E-26 1.3E-30 228.7 3.2 243 162-405 23-320 (386)
82 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-23 5.7E-28 220.8 23.4 249 89-388 61-309 (622)
83 3goz_A Leucine-rich repeat-con 99.9 6E-26 2E-30 225.3 4.2 255 122-381 2-302 (362)
84 3m19_A Variable lymphocyte rec 99.9 7.3E-24 2.5E-28 199.3 18.0 180 196-378 15-194 (251)
85 3goz_A Leucine-rich repeat-con 99.9 2.3E-25 8E-30 221.0 7.9 249 105-358 9-303 (362)
86 2xwt_C Thyrotropin receptor; s 99.9 6.7E-24 2.3E-28 197.9 15.7 199 172-399 32-237 (239)
87 2xwt_C Thyrotropin receptor; s 99.9 6.7E-24 2.3E-28 197.9 15.4 204 134-349 24-236 (239)
88 3m19_A Variable lymphocyte rec 99.9 5.6E-23 1.9E-27 193.2 19.6 179 221-403 16-194 (251)
89 1h6u_A Internalin H; cell adhe 99.9 3.9E-23 1.3E-27 200.3 17.9 192 142-352 39-230 (308)
90 1h6u_A Internalin H; cell adhe 99.9 1.8E-22 6.2E-27 195.7 19.6 195 167-377 37-231 (308)
91 3cvr_A Invasion plasmid antige 99.9 1.4E-22 4.7E-27 211.4 15.9 184 148-360 61-251 (571)
92 2o6s_A Variable lymphocyte rec 99.9 4.4E-22 1.5E-26 181.5 14.9 132 148-280 30-161 (208)
93 2o6s_A Variable lymphocyte rec 99.9 6.6E-22 2.3E-26 180.3 15.8 160 196-362 29-188 (208)
94 3ogk_B Coronatine-insensitive 99.9 2.7E-23 9.1E-28 219.2 4.6 235 166-402 265-527 (592)
95 4ay9_X Follicle-stimulating ho 99.9 3E-21 1E-25 190.5 16.8 219 148-372 32-255 (350)
96 3cvr_A Invasion plasmid antige 99.9 4E-21 1.4E-25 200.4 18.0 186 172-385 60-252 (571)
97 2v9t_B SLIT homolog 2 protein 99.9 2.5E-21 8.5E-26 178.3 14.4 161 246-410 14-174 (220)
98 4ay9_X Follicle-stimulating ho 99.9 3.2E-21 1.1E-25 190.3 15.7 246 149-407 12-264 (350)
99 3ogk_B Coronatine-insensitive 99.9 3.9E-23 1.3E-27 217.9 1.7 301 91-400 140-500 (592)
100 2xot_A Amphoterin-induced prot 99.9 1.3E-21 4.4E-26 194.0 11.6 163 245-408 41-209 (361)
101 2v70_A SLIT-2, SLIT homolog 2 99.9 4.1E-21 1.4E-25 176.8 13.4 160 246-409 14-174 (220)
102 4b8c_D Glucose-repressible alc 99.8 3.7E-22 1.3E-26 215.0 3.8 262 41-352 129-404 (727)
103 3e6j_A Variable lymphocyte rec 99.8 4.6E-20 1.6E-24 170.8 16.3 156 245-405 21-176 (229)
104 1h6t_A Internalin B; cell adhe 99.8 4.5E-20 1.5E-24 177.3 16.2 189 148-353 26-214 (291)
105 1h6t_A Internalin B; cell adhe 99.8 5.5E-20 1.9E-24 176.7 15.8 166 148-328 48-213 (291)
106 1m9s_A Internalin B; cell inva 99.8 2.1E-20 7.2E-25 196.8 12.6 170 169-352 41-210 (605)
107 2p1m_B Transport inhibitor res 99.8 1.2E-21 4.1E-26 206.6 1.1 205 193-400 287-518 (594)
108 3e6j_A Variable lymphocyte rec 99.8 2.9E-19 9.8E-24 165.5 16.9 133 148-282 42-174 (229)
109 1m9s_A Internalin B; cell inva 99.8 3.3E-20 1.1E-24 195.3 11.7 199 170-384 20-218 (605)
110 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-19 5.9E-24 165.9 14.7 155 223-380 15-170 (220)
111 2v9t_B SLIT homolog 2 protein 99.8 2.1E-19 7E-24 165.4 14.7 135 244-378 33-167 (220)
112 2xot_A Amphoterin-induced prot 99.8 1E-19 3.4E-24 180.3 13.4 176 174-352 21-202 (361)
113 2p1m_B Transport inhibitor res 99.8 1.1E-21 3.9E-26 206.8 -3.3 300 90-400 106-493 (594)
114 4ezg_A Putative uncharacterize 99.8 5.6E-19 1.9E-23 159.5 13.2 107 168-278 41-147 (197)
115 1dce_A Protein (RAB geranylger 99.8 6.5E-22 2.2E-26 207.0 -7.5 122 244-370 442-567 (567)
116 4ezg_A Putative uncharacterize 99.8 7.9E-19 2.7E-23 158.6 13.3 147 148-303 46-193 (197)
117 1w8a_A SLIT protein; signaling 99.8 1.8E-18 6.2E-23 155.6 14.7 134 271-408 12-146 (192)
118 1dce_A Protein (RAB geranylger 99.8 4E-22 1.4E-26 208.6 -10.9 204 168-395 346-567 (567)
119 1xeu_A Internalin C; cellular 99.8 4.6E-19 1.6E-23 167.6 9.4 149 193-354 39-187 (263)
120 4b8c_D Glucose-repressible alc 99.8 1.2E-19 4.1E-24 195.5 5.5 190 177-377 207-405 (727)
121 1xeu_A Internalin C; cellular 99.8 5.4E-19 1.9E-23 167.1 8.5 171 193-378 17-187 (263)
122 2wfh_A SLIT homolog 2 protein 99.8 3.5E-18 1.2E-22 153.8 12.2 138 270-412 13-150 (193)
123 1w8a_A SLIT protein; signaling 99.7 8E-18 2.8E-22 151.3 12.1 112 268-379 30-142 (192)
124 2ell_A Acidic leucine-rich nuc 99.7 8.2E-17 2.8E-21 141.2 12.3 133 243-377 24-161 (168)
125 2ell_A Acidic leucine-rich nuc 99.7 1E-16 3.4E-21 140.7 12.5 88 240-327 68-159 (168)
126 2je0_A Acidic leucine-rich nuc 99.7 9.8E-17 3.3E-21 137.8 10.1 107 172-280 18-126 (149)
127 2o6r_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 138.6 13.5 132 270-405 10-141 (177)
128 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.2E-21 136.6 10.0 128 194-323 16-148 (149)
129 3sb4_A Hypothetical leucine ri 99.7 5.1E-17 1.7E-21 158.7 6.3 273 107-394 12-327 (329)
130 3sb4_A Hypothetical leucine ri 99.7 5.3E-17 1.8E-21 158.5 6.3 241 117-370 48-328 (329)
131 2wfh_A SLIT homolog 2 protein 99.7 9.8E-16 3.3E-20 137.8 13.8 130 246-379 13-142 (193)
132 2o6r_A Variable lymphocyte rec 99.6 1.3E-15 4.4E-20 134.8 13.5 133 245-380 9-141 (177)
133 1ds9_A Outer arm dynein; leuci 99.6 1.7E-17 6E-22 149.8 -6.4 127 238-369 43-180 (198)
134 1ds9_A Outer arm dynein; leuci 99.6 1.8E-17 6.2E-22 149.7 -7.5 109 190-303 43-152 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.6 5.1E-15 1.8E-19 130.9 8.4 129 241-375 17-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.6 8.4E-15 2.9E-19 129.5 9.7 60 169-232 17-77 (176)
137 3g39_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 127.4 10.6 109 293-405 11-119 (170)
138 4fdw_A Leucine rich hypothetic 99.5 3.8E-13 1.3E-17 134.6 20.1 238 148-398 137-380 (401)
139 4fdw_A Leucine rich hypothetic 99.5 5.1E-13 1.8E-17 133.6 20.0 246 113-376 131-383 (401)
140 2r9u_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 123.3 11.4 108 294-405 15-122 (174)
141 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 120.8 11.1 109 269-380 11-119 (170)
142 2r9u_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 118.6 11.5 107 270-379 15-121 (174)
143 2ifg_A High affinity nerve gro 99.4 4.9E-13 1.7E-17 131.1 9.4 105 271-378 12-118 (347)
144 3un9_A NLR family member X1; l 99.4 1.3E-14 4.3E-19 144.0 -3.2 112 243-354 126-254 (372)
145 3un9_A NLR family member X1; l 99.4 4E-14 1.4E-18 140.3 -0.9 162 219-380 72-256 (372)
146 2ifg_A High affinity nerve gro 99.3 1.9E-12 6.4E-17 127.0 9.9 105 246-353 11-117 (347)
147 2ra8_A Uncharacterized protein 99.1 6.5E-11 2.2E-15 116.4 5.5 84 313-399 250-341 (362)
148 4fs7_A Uncharacterized protein 99.1 2E-09 6.8E-14 107.3 16.0 199 190-398 157-376 (394)
149 2ra8_A Uncharacterized protein 99.0 1E-10 3.6E-15 115.0 4.6 59 314-374 278-341 (362)
150 4gt6_A Cell surface protein; l 98.9 2.8E-08 9.5E-13 99.0 16.4 109 286-399 260-368 (394)
151 4fs7_A Uncharacterized protein 98.9 3.2E-08 1.1E-12 98.6 15.9 220 139-373 157-376 (394)
152 4gt6_A Cell surface protein; l 98.8 3E-07 1E-11 91.5 19.3 109 262-374 260-368 (394)
153 4h09_A Hypothetical leucine ri 98.6 3.1E-06 1.1E-10 83.5 20.7 267 112-397 63-342 (379)
154 1io0_A Tropomodulin; LRR prote 98.6 2E-08 7E-13 89.0 3.6 18 167-184 32-50 (185)
155 1io0_A Tropomodulin; LRR prote 98.6 2.1E-08 7.3E-13 88.9 3.4 13 193-205 34-46 (185)
156 4h09_A Hypothetical leucine ri 98.4 2.8E-05 9.6E-10 76.5 20.2 250 119-384 92-353 (379)
157 3rw6_A Nuclear RNA export fact 98.4 7.4E-08 2.5E-12 90.1 1.1 40 217-256 168-209 (267)
158 3rw6_A Nuclear RNA export fact 98.3 6.5E-08 2.2E-12 90.5 -0.1 65 241-307 168-236 (267)
159 3e4g_A ATP synthase subunit S, 98.1 2.9E-06 1E-10 73.8 5.0 82 196-277 62-149 (176)
160 3rfe_A Platelet glycoprotein I 98.0 7.4E-06 2.5E-10 67.9 6.8 68 342-412 11-79 (130)
161 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 73.6 3.7 81 148-229 63-149 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 7E-05 2.4E-09 66.3 4.1 41 168-208 38-83 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00012 4E-09 64.8 5.1 15 266-280 97-111 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.0045 1.5E-07 50.8 6.2 57 319-377 12-69 (130)
165 2lz0_A Uncharacterized protein 31.9 66 0.0023 24.1 4.8 39 333-372 14-52 (100)
166 2lz0_A Uncharacterized protein 30.0 74 0.0025 23.9 4.8 41 307-348 12-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-45 Score=357.70 Aligned_cols=301 Identities=31% Similarity=0.505 Sum_probs=226.0
Q ss_pred CCCHHHHHHHHHHHHhCCCC---CCCCCCCCCCCCCCCCccceEeCCCCCCcccEEEEECCCCCCCCCCccccccccccC
Q 044868 40 GMLPSEAETLFKIMDSMSSD---QSWRVSYSNPCKPGSSWPGIECKQGNDGYLHVTRLDFGTRPNPTCKKTATFPYQIFS 116 (463)
Q Consensus 40 ~~~~~~~~aLl~~~~~~~~~---~~W~~~~~~~C~~~~~w~gv~C~~~~~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~ 116 (463)
.|.++|++||++||+++.++ .+|.. +.|||. +.|.||+|+..+ ..++|++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~-~~~~C~--~~w~gv~C~~~~-~~~~l~~L---------------------- 55 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCN--RTWLGVLCDTDT-QTYRVNNL---------------------- 55 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCT-TSCTTT--TCSTTEEECCSS-SCCCEEEE----------------------
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCC-CCCCCc--CCCcceEeCCCC-CCceEEEE----------------------
Confidence 58899999999999999764 47965 357884 359999997531 01244444
Q ss_pred CCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCC--CCchhcCCCCCCcEEEeec-CCCCCCCccccCC
Q 044868 117 LSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVG--PIPPQISSLKFLQILTLSQ-NRLNGQIPVKIFS 193 (463)
Q Consensus 117 l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~ 193 (463)
++++| .+.+ .+|..++++++|++|++++ |.+.+.+|..+.+
T Consensus 56 -----------------------------------~L~~~-~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~ 99 (313)
T 1ogq_A 56 -----------------------------------DLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99 (313)
T ss_dssp -----------------------------------EEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG
T ss_pred -----------------------------------ECCCC-CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc
Confidence 44444 4555 5556666666666666663 6666666666666
Q ss_pred CCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCC-CCCEE
Q 044868 194 LNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLS-LLAFM 272 (463)
Q Consensus 194 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L 272 (463)
+++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 66666666666666666666666666666666666666666666666777777777777777666777777776 77777
Q ss_pred EeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCC
Q 044868 273 ALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 273 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (463)
++++|.+++.+|..+..++ |++|++++|.+.+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|+++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence 7777777777777777776 88888888888777788888888888888888888866655 778899999999999999
Q ss_pred CCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 353 GEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 353 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
+.+|..+..+++|++|++++|+++|.+|.. ..++.+ +.+++++|++.|+.|.
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L-~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRF-DVSAYANNKCLCGSPL 309 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGS-CGGGTCSSSEEESTTS
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-cccccc-ChHHhcCCCCccCCCC
Confidence 899999999999999999999999999976 778899 8999999999998654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-44 Score=393.90 Aligned_cols=333 Identities=28% Similarity=0.394 Sum_probs=239.3
Q ss_pred CHHHHHHHHHHHHhCCCC---CCCCCCCCCCCCCCCCccceEeCCCCCCcccEEEEECCCCCCCCCCcccc---cc----
Q 044868 42 LPSEAETLFKIMDSMSSD---QSWRVSYSNPCKPGSSWPGIECKQGNDGYLHVTRLDFGTRPNPTCKKTAT---FP---- 111 (463)
Q Consensus 42 ~~~~~~aLl~~~~~~~~~---~~W~~~~~~~C~~~~~w~gv~C~~~~~~~~~v~~l~L~~~~~~~~~~~g~---l~---- 111 (463)
.++|++||++||+++.++ ++|+. +.|||. |.||+|+ . +||++|+|++. .+.|. +|
T Consensus 10 ~~~~~~all~~k~~~~~~~~l~~W~~-~~~~C~----w~gv~C~-~----~~v~~L~L~~~-----~l~g~~~~l~~~l~ 74 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKNLLPDWSS-NKNPCT----FDGVTCR-D----DKVTSIDLSSK-----PLNVGFSAVSSSLL 74 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTTSSTTCCT-TSCGGG----STTEEEE-T----TEEEEEECTTS-----CCCEEHHHHHHHTT
T ss_pred CHHHHHHHHHHHhhCCCcccccCCCC-CCCCcC----CcceEEC-C----CcEEEEECCCC-----CcCCccCccChhHh
Confidence 468999999999999764 58974 468996 9999998 3 49999999753 24444 44
Q ss_pred -------------------ccccCCCCCCEEEcccCCCCCcccccc--cccccCCCCccEEEccCCCCCCCCCchhc-CC
Q 044868 112 -------------------YQIFSLSYLQSVFFFSCFTHTKTTLSV--SADRLYNSSLQQLSLRSNPALVGPIPPQI-SS 169 (463)
Q Consensus 112 -------------------~~l~~l~~L~~L~L~~~~~~~~~~ip~--~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l-~~ 169 (463)
..++++++|++|+|++|.+ .+.+|. .++++++ |++|++++| .+.+.+|..+ .+
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~l~~l~~--L~~L~Ls~n-~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL--SGPVTTLTSLGSCSG--LKFLNVSSN-TLDFPGKVSGGLK 149 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEE--EEEGGGGGGGGGCTT--CCEEECCSS-EEECCSSCCSCCC
T ss_pred ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcC--CCcCCChHHHhCCCC--CCEEECcCC-ccCCcCCHHHhcc
Confidence 4555666666666666554 455555 5666665 666666666 5666555544 56
Q ss_pred CCCCcEEEeecCCCCCCCccc---cCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 170 LKFLQILTLSQNRLNGQIPVK---IFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
+++|++|++++|++++..|.. +.++++|++|++++|.+.+..|. ..+++|++|++++|.+++.+|. ++.+++|+
T Consensus 150 l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp CTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence 666666666666666555544 55666666666666666554442 5667777777777777766665 77777777
Q ss_pred EEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCC-CCCCEEeccCC
Q 044868 247 KLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGIL-VKLQELRLANS 325 (463)
Q Consensus 247 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n 325 (463)
+|++++|.+++.+|..+.++++|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|..+... ++|++|++++|
T Consensus 227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 7777777777777777777777777777777777666554 66777777777777777777776654 88888888888
Q ss_pred CCCCCCccccCCCCcccEEEcccccCCCCchhh-hCCCCCCCeEEccCCCCCccCCCCchhhh-ccCCeEeccCCCC
Q 044868 326 GYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVV-FGSLSHIYHLNLSRNFLDGVVPFNSSFLK-RLGRNLDLSGNPG 400 (463)
Q Consensus 326 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~~L~L~~N~~ 400 (463)
.+++.+|..++.+++|++|++++|+++|.+|.. +..+++|++|++++|++++.+|..+..++ .+ ++|++++|.+
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L-~~L~Ls~N~l 380 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL-LTLDLSSNNF 380 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC-SEEECCSSEE
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC-cEEEccCCCc
Confidence 888888888888888888888888888777765 78888888888888888888888877776 67 7888887754
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.3e-44 Score=381.63 Aligned_cols=337 Identities=20% Similarity=0.266 Sum_probs=278.5
Q ss_pred CCHHHHHHHHHHHHhCCCC------------CCCCCCCCCCCCCCCCc---cceEeCCCCCCcccEEEEECCCCCCCCCC
Q 044868 41 MLPSEAETLFKIMDSMSSD------------QSWRVSYSNPCKPGSSW---PGIECKQGNDGYLHVTRLDFGTRPNPTCK 105 (463)
Q Consensus 41 ~~~~~~~aLl~~~~~~~~~------------~~W~~~~~~~C~~~~~w---~gv~C~~~~~~~~~v~~l~L~~~~~~~~~ 105 (463)
....|++||.++++++.++ .+|+. +.|+|. | .||+|+.. +||++|+|++ +.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~----w~~~~GV~C~~~----~~V~~L~L~~-----~~ 92 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDM----WGAQPGVSLNSN----GRVTGLSLEG-----FG 92 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGG----TTCCTTEEECTT----CCEEEEECTT-----SC
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCccc----ccCCCCeEEcCC----CCEEEEEecC-----cc
Confidence 3456999999999998543 25764 357886 9 99999865 5999999974 56
Q ss_pred ccccccccccCCCCCCEEEcccCCC-------------------------------------------------------
Q 044868 106 KTATFPYQIFSLSYLQSVFFFSCFT------------------------------------------------------- 130 (463)
Q Consensus 106 ~~g~l~~~l~~l~~L~~L~L~~~~~------------------------------------------------------- 130 (463)
+.|.+|++++++++|++|+|++|.+
T Consensus 93 l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~ 172 (636)
T 4eco_A 93 ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172 (636)
T ss_dssp CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTS
T ss_pred cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccc
Confidence 8999999999999999999999843
Q ss_pred ---------------------CCcccccccccccCCCCccEEEccCCCCCCCC-----------------CchhcC--CC
Q 044868 131 ---------------------HTKTTLSVSADRLYNSSLQQLSLRSNPALVGP-----------------IPPQIS--SL 170 (463)
Q Consensus 131 ---------------------~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~-----------------~p~~l~--~l 170 (463)
...+ +|..++++++ |++|+|++| .+++. +|..++ ++
T Consensus 173 ~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~--L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTK--LRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTT--CCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred cccccccccchhhhhhccccCCCcc-CCHHHhcccC--CCEEECcCC-ccccccccccccccccchhcccCchhhhhccc
Confidence 2224 8889999998 999999999 89986 999999 99
Q ss_pred CCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCC-CCC-CCchhcCCC------CCCCEEEcccCcCCCCCch--hhc
Q 044868 171 KFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNL-LAG-TIPVQVGNL------RNLVGLDLSYNSLTGSIPS--TIG 240 (463)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~ 240 (463)
++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~ 327 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ 327 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT
T ss_pred CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc
Confidence 999999999999999999999999999999999998 998 899988876 99999999999999 8888 899
Q ss_pred CCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCC-CcEeecCCCCCCCCCchhhhCCC--CC
Q 044868 241 QLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQS-LQYFLMDDNPMFIPLPVEFGILV--KL 317 (463)
Q Consensus 241 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L 317 (463)
.+++|++|++++|+++|.+| .+..+++|++|++++|.++ .+|..+.++++ |++|++++|.+. .+|..+...+ +|
T Consensus 328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 99999999999999998888 8888889999999999888 78888888888 999999998887 6777666544 78
Q ss_pred CEEeccCCCCCCCCccccC-------CCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCc-hhh---
Q 044868 318 QELRLANSGYSGSIPPSFS-------QLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNS-SFL--- 386 (463)
Q Consensus 318 ~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l--- 386 (463)
++|++++|.+++.+|..+. .+++|++|++++|++++..+..+..+++|++|++++|+++ .+|... ...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccc
Confidence 8888888888888887777 6778888888888888333334455777777777777777 444332 211
Q ss_pred ----hccCCeEeccCCCCC
Q 044868 387 ----KRLGRNLDLSGNPGL 401 (463)
Q Consensus 387 ----~~L~~~L~L~~N~~~ 401 (463)
+.+ +.|++++|.+.
T Consensus 484 ~~~l~~L-~~L~Ls~N~l~ 501 (636)
T 4eco_A 484 FKNTYLL-TSIDLRFNKLT 501 (636)
T ss_dssp CTTGGGC-CEEECCSSCCC
T ss_pred ccccCCc-cEEECcCCcCC
Confidence 256 67777777665
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-42 Score=377.02 Aligned_cols=314 Identities=19% Similarity=0.259 Sum_probs=253.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCC----CCC--CCCCCCc------------cceEeCCCCCCcccEEEEECCCCC
Q 044868 39 NGMLPSEAETLFKIMDSMSSDQSWRVSY----SNP--CKPGSSW------------PGIECKQGNDGYLHVTRLDFGTRP 100 (463)
Q Consensus 39 ~~~~~~~~~aLl~~~~~~~~~~~W~~~~----~~~--C~~~~~w------------~gv~C~~~~~~~~~v~~l~L~~~~ 100 (463)
+++..+|++||++||+++.++ +|+.++ .+| |. | .||+|+.. +||++|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~----W~~~~~~~~w~~~~GV~C~~~----~~V~~L~Ls~-- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLN----WNFNKELDMWGDQPGVDLDNN----GRVTGLSLAG-- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCS----CCCSSCGGGTTCCTTEEECTT----SCEEEEECTT--
T ss_pred cccchHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccc----cccccccccccCcCceEecCC----CCEEEEECcc--
Confidence 345567999999999999664 997543 356 64 9 99999864 5999999984
Q ss_pred CCCCCccccccccccCCCCCCEEEc-ccCCC-------------------------------------------------
Q 044868 101 NPTCKKTATFPYQIFSLSYLQSVFF-FSCFT------------------------------------------------- 130 (463)
Q Consensus 101 ~~~~~~~g~l~~~l~~l~~L~~L~L-~~~~~------------------------------------------------- 130 (463)
+.+.|.+|++++++++|++|+| ++|.+
T Consensus 333 ---~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 333 ---FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp ---TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred ---CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 5689999999999999999999 65521
Q ss_pred --------------------------CCcccccccccccCCCCccEEEccCCCCCCC-----------------CCchhc
Q 044868 131 --------------------------HTKTTLSVSADRLYNSSLQQLSLRSNPALVG-----------------PIPPQI 167 (463)
Q Consensus 131 --------------------------~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~-----------------~~p~~l 167 (463)
...+ +|..++++++ |++|+|++| .+++ .+|..+
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~--L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTK--LQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTT--CCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred hCccccccccccccchhhceeccccCcccc-hhHHHhcCCC--CCEEECcCC-cCCCCcccccccccccccccccCChhh
Confidence 0011 8888999998 999999999 8998 389998
Q ss_pred C--CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCC-CCC-CCchhcCCCC-------CCCEEEcccCcCCCCCc
Q 044868 168 S--SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNL-LAG-TIPVQVGNLR-------NLVGLDLSYNSLTGSIP 236 (463)
Q Consensus 168 ~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p 236 (463)
+ ++++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|++|++++|+++ .+|
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 8 99999999999999999999999999999999999998 988 7888766554 9999999999999 888
Q ss_pred h--hhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCC-CcEeecCCCCCCCCCchhhhC
Q 044868 237 S--TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQS-LQYFLMDDNPMFIPLPVEFGI 313 (463)
Q Consensus 237 ~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~ 313 (463)
. .++.+++|++|++++|+++ .+| .+..+++|+.|++++|.++ .+|..+.++++ |++|++++|.+. .+|..+..
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 8 8999999999999999998 788 8899999999999999998 88888999998 999999999987 67776665
Q ss_pred CCC--CCEEeccCCCCCCCCcccc---C--CCCcccEEEcccccCCCCchhhh-CCCCCCCeEEccCCCCC
Q 044868 314 LVK--LQELRLANSGYSGSIPPSF---S--QLNNLSTLSLQNNRLTGEIPVVF-GSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 314 l~~--L~~L~L~~n~l~~~~p~~l---~--~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~ 376 (463)
++. |+.|++++|++.+.+|... . .+++|++|+|++|+++ .+|..+ ..+++|+.|+|++|+++
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 543 7888888888776554321 1 2235666666666666 344332 35556666666666655
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.8e-41 Score=341.64 Aligned_cols=322 Identities=22% Similarity=0.191 Sum_probs=278.5
Q ss_pred CCccc--eEeCCCCC-----CcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccc-cccccccCC
Q 044868 74 SSWPG--IECKQGND-----GYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTL-SVSADRLYN 145 (463)
Q Consensus 74 ~~w~g--v~C~~~~~-----~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~i-p~~~~~l~~ 145 (463)
|.|.+ |.|+..+- -..+++.|+|++. .+.+..|..+.++++|++|++++|.. .+.+ +..+..+++
T Consensus 8 c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~L~~n~~--~~~i~~~~~~~l~~ 80 (455)
T 3v47_A 8 CSVIGYNAICINRGLHQVPELPAHVNYVDLSLN-----SIAELNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSS 80 (455)
T ss_dssp CEEETTEEECCSSCCSSCCCCCTTCCEEECCSS-----CCCEECTTTTSSCTTCCEEECCCCST--TCEECTTTTTTCTT
T ss_pred eEEEccccCcCCCCcccCCCCCCccCEEEecCC-----ccCcCChhHhccCccccEEECcCCcc--cceECccccccccc
Confidence 34655 88875431 1247899999753 46666788999999999999999875 3455 456888888
Q ss_pred CCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccc--cCCCCCCcEEEcccCCCCCCCchh-cCCCCCCC
Q 044868 146 SSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVK--IFSLNSLVHLDLSYNLLAGTIPVQ-VGNLRNLV 222 (463)
Q Consensus 146 ~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~ 222 (463)
|++|++++| .+.+..|..|+++++|++|++++|.+++.+|.. +.++++|++|++++|.+++..|.. +.++++|+
T Consensus 81 --L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 81 --LIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp --CCEEECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred --CCEEeCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 999999999 898888999999999999999999998766655 889999999999999999887776 78999999
Q ss_pred EEEcccCcCCCCCchhhcCC----------------------------------CCcCEEeccCCCCCCCCchhhhc---
Q 044868 223 GLDLSYNSLTGSIPSTIGQL----------------------------------GMLQKLDLSSNSLTGSIPDSIDK--- 265 (463)
Q Consensus 223 ~L~L~~n~l~~~~p~~l~~l----------------------------------~~L~~L~L~~n~l~~~~p~~l~~--- 265 (463)
+|++++|++.+..+..+..+ ++|++|++++|++++..|..+..
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 99999999987777655443 67899999999887665554432
Q ss_pred ------------------------------------CCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCch
Q 044868 266 ------------------------------------LSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPV 309 (463)
Q Consensus 266 ------------------------------------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 309 (463)
.++|++|++++|.+++..|..+..+++|++|++++|.+.+..|.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 25899999999999988899999999999999999999999999
Q ss_pred hhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhcc
Q 044868 310 EFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRL 389 (463)
Q Consensus 310 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 389 (463)
.+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..++.|
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999999999998889999999999999999999998889999999999999999999998777777889999
Q ss_pred CCeEeccCCCCCCCCcc
Q 044868 390 GRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 390 ~~~L~L~~N~~~c~~~~ 406 (463)
++|++++|++.|+|+.
T Consensus 398 -~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 398 -QKIWLHTNPWDCSCPR 413 (455)
T ss_dssp -CEEECCSSCBCCCTTT
T ss_pred -cEEEccCCCcccCCCc
Confidence 9999999999999984
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.8e-41 Score=363.68 Aligned_cols=301 Identities=33% Similarity=0.431 Sum_probs=185.0
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCC-CCCEEEcccCCCCCcccccccccc--cCCCCccEEEccCCCCCCCCCchh
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLS-YLQSVFFFSCFTHTKTTLSVSADR--LYNSSLQQLSLRSNPALVGPIPPQ 166 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~-~L~~L~L~~~~~~~~~~ip~~~~~--l~~~~L~~L~Ls~n~~l~~~~p~~ 166 (463)
+++.|+++. +.+.|.+|..+.+++ +|++|++++|.+ .+.+|..+.. ++. |++|++++| .+.+.+|..
T Consensus 344 ~L~~L~Ls~-----n~l~~~~p~~l~~l~~~L~~L~Ls~N~l--~~~~~~~~~~~~~~~--L~~L~L~~n-~l~~~~p~~ 413 (768)
T 3rgz_A 344 GLKVLDLSF-----NEFSGELPESLTNLSASLLTLDLSSNNF--SGPILPNLCQNPKNT--LQELYLQNN-GFTGKIPPT 413 (768)
T ss_dssp TCCEEECCS-----SEEEECCCTTHHHHTTTCSEEECCSSEE--EEECCTTTTCSTTCC--CCEEECCSS-EEEEECCGG
T ss_pred CCCEEeCcC-----CccCccccHHHHhhhcCCcEEEccCCCc--CCCcChhhhhcccCC--ccEEECCCC-ccccccCHH
Confidence 566677753 345566666666665 666666666654 4445555444 333 666666666 555566666
Q ss_pred cCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 167 ISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 167 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
++++++|++|++++|++++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 493 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence 66666666666666666655666666666666666666666666666666666666666666666666666666666666
Q ss_pred EEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhh---------------
Q 044868 247 KLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEF--------------- 311 (463)
Q Consensus 247 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l--------------- 311 (463)
+|++++|++++.+|..++.+++|++|++++|++++.+|..+.++++|++|++++|.+.|.+|..+
T Consensus 494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 66666666666666666666666666666666666666666666666666666665555544332
Q ss_pred -------------------------------------------------------hCCCCCCEEeccCCCCCCCCccccC
Q 044868 312 -------------------------------------------------------GILVKLQELRLANSGYSGSIPPSFS 336 (463)
Q Consensus 312 -------------------------------------------------------~~l~~L~~L~L~~n~l~~~~p~~l~ 336 (463)
+.+++|++|+|++|+++|.+|..++
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 2234566666666666666666666
Q ss_pred CCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCC
Q 044868 337 QLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGL 401 (463)
Q Consensus 337 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~ 401 (463)
.+++|+.|+|++|+++|.+|..++.+++|++|||++|+++|.+|..+..++.| ++|++++|++.
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L-~~L~ls~N~l~ 717 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML-TEIDLSNNNLS 717 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCC-SEEECCSSEEE
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCC-CEEECcCCccc
Confidence 66666666666666666666666666666666666666666666666666666 66666666543
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=327.99 Aligned_cols=325 Identities=20% Similarity=0.130 Sum_probs=290.1
Q ss_pred CccceEeCCCC------CCcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCc
Q 044868 75 SWPGIECKQGN------DGYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSL 148 (463)
Q Consensus 75 ~w~gv~C~~~~------~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L 148 (463)
.|.+|.|...+ .-..+++.|+|++. .+.+..+..+.++++|++|++++|.+ .+..|..+.++++ |
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n-----~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~--L 82 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKN-----RIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFN--L 82 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSS-----CCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTT--C
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCC-----ccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCcc--C
Confidence 58899997542 11246788888743 45666678899999999999999875 4556788999988 9
Q ss_pred cEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEccc
Q 044868 149 QQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSY 228 (463)
Q Consensus 149 ~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 228 (463)
++|+|++| .+.+..+..|.++++|++|+|++|.+.+..|..+.++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 83 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 83 RTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 99999999 78876666789999999999999999988888899999999999999999988888999999999999999
Q ss_pred CcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCc
Q 044868 229 NSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLP 308 (463)
Q Consensus 229 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 308 (463)
|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|++|++++|.+.+..+
T Consensus 162 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp CCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred CcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 99997777789999999999999999998888889999999999999999888888877777899999999999987777
Q ss_pred hhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhc
Q 044868 309 VEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKR 388 (463)
Q Consensus 309 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 388 (463)
..+..+++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..++.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 78999999999999999999888888999999999999999999888999999999999999999999887777888899
Q ss_pred cCCeEeccCCCCCCCCcccccc
Q 044868 389 LGRNLDLSGNPGLCLNPAEAYS 410 (463)
Q Consensus 389 L~~~L~L~~N~~~c~~~~~~~~ 410 (463)
| +.|++++|++.|+|...|+.
T Consensus 322 L-~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 322 L-ETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp C-CEEECCSSCEECSGGGHHHH
T ss_pred c-CEEEccCCCccCccchHhHH
Confidence 9 99999999999999988754
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-37 Score=327.45 Aligned_cols=308 Identities=22% Similarity=0.225 Sum_probs=279.1
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
.++.+++++. .+.+..+..+.++++|++|++++|.+ ..+|..+..+++ |++|++++| .+.+..|..+++
T Consensus 255 ~L~~L~l~~n-----~l~~~~~~~~~~l~~L~~L~l~~n~l---~~lp~~l~~l~~--L~~L~l~~n-~l~~~~~~~~~~ 323 (606)
T 3t6q_A 255 SVESINLQKH-----YFFNISSNTFHCFSGLQELDLTATHL---SELPSGLVGLST--LKKLVLSAN-KFENLCQISASN 323 (606)
T ss_dssp EEEEEECTTC-----CCSSCCTTTTTTCTTCSEEECTTSCC---SCCCSSCCSCTT--CCEEECTTC-CCSBGGGGCGGG
T ss_pred ceeEEEeecC-----ccCccCHHHhccccCCCEEeccCCcc---CCCChhhccccc--CCEEECccC-CcCcCchhhhhc
Confidence 6888888743 35555566789999999999999975 478989999988 999999999 888888889999
Q ss_pred CCCCcEEEeecCCCCCCCccc-cCCCCCCcEEEcccCCCCCCC--chhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 170 LKFLQILTLSQNRLNGQIPVK-IFSLNSLVHLDLSYNLLAGTI--PVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
+++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.. +..+..+++|++|++++|++.+..|..+..+++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 999999999999998877765 889999999999999998765 77899999999999999999988889999999999
Q ss_pred EEeccCCCCCCCCch-hhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCC---CchhhhCCCCCCEEec
Q 044868 247 KLDLSSNSLTGSIPD-SIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIP---LPVEFGILVKLQELRL 322 (463)
Q Consensus 247 ~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L 322 (463)
+|++++|++++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+..+++|++|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 999999999877654 488999999999999999988899999999999999999999873 3367889999999999
Q ss_pred cCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCC
Q 044868 323 ANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 323 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c 402 (463)
++|++++..|..+..+++|++|+|++|++++..|..+..+++| +|++++|++++..|..+..++.+ +.+++++||+.|
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c 561 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ-RTINLRQNPLDC 561 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS-SEEECTTCCEEC
T ss_pred CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC-CEEeCCCCCccc
Confidence 9999999989999999999999999999999999999999999 99999999999989889999999 999999999999
Q ss_pred CCcccccc
Q 044868 403 LNPAEAYS 410 (463)
Q Consensus 403 ~~~~~~~~ 410 (463)
+|+..++.
T Consensus 562 ~c~~~~~~ 569 (606)
T 3t6q_A 562 TCSNIYFL 569 (606)
T ss_dssp SGGGHHHH
T ss_pred cCCcHHHH
Confidence 99976644
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-36 Score=320.82 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=121.1
Q ss_pred hhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCC-CCchhhhCCCCCCEEeccCCCCCCCCccccCCCCc
Q 044868 262 SIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFI-PLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNN 340 (463)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 340 (463)
.+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|++|++++|++++..|..+..+++
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccccc
Confidence 44455566666666666666666667777777777777777776 36777888889999999999998888888999999
Q ss_pred ccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhh-ccCCeEeccCCCCCCCCccccccccc
Q 044868 341 LSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLK-RLGRNLDLSGNPGLCLNPAEAYSVKI 413 (463)
Q Consensus 341 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~~L~L~~N~~~c~~~~~~~~~~~ 413 (463)
|++|++++|++++.+|..+..+++|++|++++|+++ .+|..+..++ .+ +++++++||+.|+|+..|+..+.
T Consensus 499 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L-~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSL-AFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp CCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTC-CEEECCSCCCCCSSTTHHHHTTT
T ss_pred CCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccC-cEEEccCCCcccCCccHHHHHHH
Confidence 999999999999888999999999999999999999 5566677776 48 99999999999999988755544
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-36 Score=310.24 Aligned_cols=300 Identities=20% Similarity=0.200 Sum_probs=218.8
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCC-CCchhcC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVG-PIPPQIS 168 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~-~~p~~l~ 168 (463)
+++.|+|++ +.+.+..|..+.++++|++|++++|.+ ..+|.. .+++ |++|++++| .+.+ .+|..++
T Consensus 46 ~L~~L~Ls~-----n~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~lp~~--~l~~--L~~L~L~~N-~l~~~~~p~~~~ 112 (520)
T 2z7x_B 46 KLRILIISH-----NRIQYLDISVFKFNQELEYLDLSHNKL---VKISCH--PTVN--LKHLDLSFN-AFDALPICKEFG 112 (520)
T ss_dssp TCCEEECCS-----SCCCEEEGGGGTTCTTCCEEECCSSCC---CEEECC--CCCC--CSEEECCSS-CCSSCCCCGGGG
T ss_pred cccEEecCC-----CccCCcChHHhhcccCCCEEecCCCce---eecCcc--ccCC--ccEEeccCC-ccccccchhhhc
Confidence 455666653 234555566777777777777777764 245555 5555 777777777 6665 4677777
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCC--cEEEcccCCC--CCCCchhcCCCC-------------------------
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSL--VHLDLSYNLL--AGTIPVQVGNLR------------------------- 219 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~~p~~l~~l~------------------------- 219 (463)
++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 113 ~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l 189 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189 (520)
T ss_dssp GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTC
T ss_pred cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcc
Confidence 77777777777777653 233444444 5555555555 444444443322
Q ss_pred ----------------------------------------------------------CCCEEEcccCcCCCCCchhh--
Q 044868 220 ----------------------------------------------------------NLVGLDLSYNSLTGSIPSTI-- 239 (463)
Q Consensus 220 ----------------------------------------------------------~L~~L~L~~n~l~~~~p~~l-- 239 (463)
+|++|++++|+++|.+|..+
T Consensus 190 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 269 (520)
T 2z7x_B 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269 (520)
T ss_dssp SEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCC
T ss_pred cceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhh
Confidence 56666666666655555443
Q ss_pred ---------------------------------------------------cCCCCcCEEeccCCCCCCCCchhhhcCCC
Q 044868 240 ---------------------------------------------------GQLGMLQKLDLSSNSLTGSIPDSIDKLSL 268 (463)
Q Consensus 240 ---------------------------------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 268 (463)
..+++|++|++++|++++.+|..+.++++
T Consensus 270 ~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 56678888888888888878888888888
Q ss_pred CCEEEeeCCCCCC--CCchhhhCCCCCcEeecCCCCCCCCCchh-hhCCCCCCEEeccCCCCCCCCccccCCCCcccEEE
Q 044868 269 LAFMALSNNKLTG--NFPKGLAKLQSLQYFLMDDNPMFIPLPVE-FGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLS 345 (463)
Q Consensus 269 L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 345 (463)
|++|++++|++++ .+|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+. ++|++|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~ 427 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence 8888888888886 45667888888888888888888755543 67788888888888888877776654 7899999
Q ss_pred cccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCccccc
Q 044868 346 LQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAY 409 (463)
Q Consensus 346 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~ 409 (463)
+++|+++ .+|..+..+++|++|++++|++++..+..+..++.+ ++|++++|++.|+|+..|+
T Consensus 428 Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L-~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCBCCCHHHHHH
T ss_pred CCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcc-cEEECcCCCCcccCCchHH
Confidence 9999999 788888899999999999999995444447888999 9999999999999998776
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.8e-35 Score=301.15 Aligned_cols=281 Identities=21% Similarity=0.181 Sum_probs=250.0
Q ss_pred CCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCC-chhcCCCCCCcEEEeecCCCCCCCccccCCCCC
Q 044868 118 SYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPI-PPQISSLKFLQILTLSQNRLNGQIPVKIFSLNS 196 (463)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 196 (463)
++|++|++++|.+ .+..|..+.++++ |++|++++| .+.+.+ +..|.++++|++|+|++|++++..|..+.++++
T Consensus 30 ~~l~~L~Ls~n~i--~~~~~~~~~~l~~--L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSI--AELNETSFSRLQD--LQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCC--CEECTTTTSSCTT--CCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEEEecCCcc--CcCChhHhccCcc--ccEEECcCC-cccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 7899999999876 4556888999998 999999999 777665 467999999999999999999888999999999
Q ss_pred CcEEEcccCCCCCCCchh--cCCCCCCCEEEcccCcCCCCCchh-hcCCCCcCEEeccCCCCCCCCchhhhcC-------
Q 044868 197 LVHLDLSYNLLAGTIPVQ--VGNLRNLVGLDLSYNSLTGSIPST-IGQLGMLQKLDLSSNSLTGSIPDSIDKL------- 266 (463)
Q Consensus 197 L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l------- 266 (463)
|++|++++|.+++.++.. +..+++|++|++++|++++..|.. +..+++|++|++++|++++..+..+..+
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~ 184 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL 184 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence 999999999999866665 899999999999999999887776 8899999999999999998877666544
Q ss_pred ---------------------------CCCCEEEeeCCCCCCCCchhhhC------------------------------
Q 044868 267 ---------------------------SLLAFMALSNNKLTGNFPKGLAK------------------------------ 289 (463)
Q Consensus 267 ---------------------------~~L~~L~L~~n~l~~~~p~~l~~------------------------------ 289 (463)
++|++|++++|.+++..|..+..
T Consensus 185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 264 (455)
T 3v47_A 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264 (455)
T ss_dssp EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence 67889999999887665554432
Q ss_pred ---------CCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhC
Q 044868 290 ---------LQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFG 360 (463)
Q Consensus 290 ---------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 360 (463)
.++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..|..+.
T Consensus 265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 344 (455)
T 3v47_A 265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE 344 (455)
T ss_dssp CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence 25799999999999999999999999999999999999988899999999999999999999988889999
Q ss_pred CCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCC
Q 044868 361 SLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLN 404 (463)
Q Consensus 361 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~ 404 (463)
.+++|++|+|++|++++..|..+..++.| ++|++++|.+....
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNL-KELALDTNQLKSVP 387 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCSSCCSCCC
T ss_pred CcccCCEEECCCCcccccChhhccccccc-cEEECCCCccccCC
Confidence 99999999999999999999999999999 99999999977543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.2e-35 Score=306.21 Aligned_cols=316 Identities=22% Similarity=0.241 Sum_probs=195.5
Q ss_pred CccceEeCCCCC--------CcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCC
Q 044868 75 SWPGIECKQGND--------GYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNS 146 (463)
Q Consensus 75 ~w~gv~C~~~~~--------~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~ 146 (463)
.|.|| |+..+. -..+++.|+|++. .+.+..|..+.++++|++|++++|.+ .+..|..+..+++
T Consensus 5 ~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~- 75 (549)
T 2z81_A 5 DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFN-----KITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGS- 75 (549)
T ss_dssp CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSS-----CCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTT-
T ss_pred CCCce-EECCCCccccccccCCCCccEEECcCC-----ccCccChhhhhcCCcccEEECCCCCc--CccChhhcccccc-
Confidence 49998 874321 1247889998743 35555567777888888888888765 3444566777776
Q ss_pred CccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCC-CCccccCCCCCCcEEEcccCCCCCCCc-hhcCCCCCCCEE
Q 044868 147 SLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNG-QIPVKIFSLNSLVHLDLSYNLLAGTIP-VQVGNLRNLVGL 224 (463)
Q Consensus 147 ~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L 224 (463)
|++|++++| .+.+..|..|+++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+| ..+.++++|++|
T Consensus 76 -L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 76 -LEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp -CCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred -CCEEECCCC-ccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 777777777 6777666667777777777777777764 345566667777777777776433443 345555555555
Q ss_pred EcccCcCCCCCchhhcC------------------------CCCcCEEeccCCCCCCC----------------------
Q 044868 225 DLSYNSLTGSIPSTIGQ------------------------LGMLQKLDLSSNSLTGS---------------------- 258 (463)
Q Consensus 225 ~L~~n~l~~~~p~~l~~------------------------l~~L~~L~L~~n~l~~~---------------------- 258 (463)
++++|++++..|..++. +++|++|++++|++++.
T Consensus 154 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 233 (549)
T 2z81_A 154 EIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233 (549)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred eccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence 55555555443333322 33444444444443321
Q ss_pred --------------------------------------------------------------------------------
Q 044868 259 -------------------------------------------------------------------------------- 258 (463)
Q Consensus 259 -------------------------------------------------------------------------------- 258 (463)
T Consensus 234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~ 313 (549)
T 2z81_A 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313 (549)
T ss_dssp EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence
Q ss_pred -----------Cchhh-hcCCCCCEEEeeCCCCCCCCc-----------------------------hhhhCCCCCcEee
Q 044868 259 -----------IPDSI-DKLSLLAFMALSNNKLTGNFP-----------------------------KGLAKLQSLQYFL 297 (463)
Q Consensus 259 -----------~p~~l-~~l~~L~~L~L~~n~l~~~~p-----------------------------~~l~~l~~L~~L~ 297 (463)
+|..+ ..+++|++|++++|.+++.+| ..+..+++|++|+
T Consensus 314 ~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 11111 234455555555555443322 2244445555555
Q ss_pred cCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccc------------------cCCCCcccEEEcccccCCCCchhhh
Q 044868 298 MDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPS------------------FSQLNNLSTLSLQNNRLTGEIPVVF 359 (463)
Q Consensus 298 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~------------------l~~l~~L~~L~Ls~N~l~~~~p~~l 359 (463)
+++|.+. .+|..+..+++|++|++++|++++ +|.. ...+++|++|+|++|+++ .+|. .
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-G
T ss_pred CCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-c
Confidence 5555554 344444445555555555555442 1111 124667777777777777 5665 3
Q ss_pred CCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 360 GSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 360 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
..+++|++|+|++|++++..|..+..++.+ +.|++++|++.|.|+.
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTC-CEEECCSSCBCCCHHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCccc-CEEEecCCCccCCCcc
Confidence 567889999999999998888888899999 9999999999999984
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=9.8e-36 Score=291.80 Aligned_cols=284 Identities=20% Similarity=0.234 Sum_probs=178.5
Q ss_pred CCCHHHHHHHHHHHHhCC-CCC----CCC---CCCCCCCCCCCCccceEeCCCCCCcccEEEEECCCCCCCCCCcccccc
Q 044868 40 GMLPSEAETLFKIMDSMS-SDQ----SWR---VSYSNPCKPGSSWPGIECKQGNDGYLHVTRLDFGTRPNPTCKKTATFP 111 (463)
Q Consensus 40 ~~~~~~~~aLl~~~~~~~-~~~----~W~---~~~~~~C~~~~~w~gv~C~~~~~~~~~v~~l~L~~~~~~~~~~~g~l~ 111 (463)
....+|++||++||+++. ++. +|. ....++|. |.|+.|+... ..+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~----~~g~~~~~~~----------------------~~l~ 76 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIET----RTGRALKATA----------------------DLLE 76 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCC----SHHHHHHHHH----------------------HHHH
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccc----cCCcchhhhH----------------------HHHh
Confidence 445679999999999873 332 463 23356775 9999996320 0000
Q ss_pred ccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCcccc
Q 044868 112 YQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKI 191 (463)
Q Consensus 112 ~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 191 (463)
-...+++++|++++|.+ ..+|..++++++ |++|+|++| .+. .+|..++++++|++|+|++|.++ .+|..+
T Consensus 77 --~~~~~~l~~L~L~~n~l---~~lp~~l~~l~~--L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l 146 (328)
T 4fcg_A 77 --DATQPGRVALELRSVPL---PQFPDQAFRLSH--LQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI 146 (328)
T ss_dssp --HHTSTTCCEEEEESSCC---SSCCSCGGGGTT--CSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG
T ss_pred --cccccceeEEEccCCCc---hhcChhhhhCCC--CCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccc-cCcHHH
Confidence 00123444444444433 244444444444 555555555 444 44444455555555555555554 444444
Q ss_pred CCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCE
Q 044868 192 FSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAF 271 (463)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 271 (463)
.++++|++|++++|++.+.+|..+... ..+..+..+++|++|++++|+++ .+|..+.++++|++
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred hcCcCCCEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence 445555555555544444444333210 00112334777778888777777 67777777788888
Q ss_pred EEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccC
Q 044868 272 MALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRL 351 (463)
Q Consensus 272 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 351 (463)
|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|+|++|++
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 8888887774 555677778888888888777777777777788888888888877777787777888888888888888
Q ss_pred CCCchhhhCCCCCCCeEEccCCCCC
Q 044868 352 TGEIPVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 352 ~~~~p~~l~~l~~L~~L~L~~N~l~ 376 (463)
.+.+|..+..+++|+.+++..|.+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhccHHHhhccCceEEeCCHHHHH
Confidence 8788888888888888887776655
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-35 Score=314.73 Aligned_cols=295 Identities=19% Similarity=0.205 Sum_probs=199.5
Q ss_pred ccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCC-CCCcc-ccccccccc------CCCCccEEEccCCCCCC
Q 044868 89 LHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCF-THTKT-TLSVSADRL------YNSSLQQLSLRSNPALV 160 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~-~~~~~-~ip~~~~~l------~~~~L~~L~Ls~n~~l~ 160 (463)
.+++.|+|++ +.+.|.+|..++++++|++|++++|. + .+ .+|..++.+ ++ |++|++++| .+.
T Consensus 249 ~~L~~L~L~~-----n~l~~~~p~~l~~l~~L~~L~Ls~n~~l--~~~~lp~~~~~L~~~~~l~~--L~~L~L~~n-~l~ 318 (636)
T 4eco_A 249 KDLTDVEVYN-----CPNLTKLPTFLKALPEMQLINVACNRGI--SGEQLKDDWQALADAPVGEK--IQIIYIGYN-NLK 318 (636)
T ss_dssp TTCCEEEEEC-----CTTCSSCCTTTTTCSSCCEEECTTCTTS--CHHHHHHHHHHHHHSGGGGT--CCEEECCSS-CCS
T ss_pred CCCCEEEecC-----CcCCccChHHHhcCCCCCEEECcCCCCC--ccccchHHHHhhhccccCCC--CCEEECCCC-cCC
Confidence 3677888863 45778899999999999999999986 4 56 788888776 66 999999998 777
Q ss_pred CCCch--hcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCC-CCEEEcccCcCCCCCch
Q 044868 161 GPIPP--QISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRN-LVGLDLSYNSLTGSIPS 237 (463)
Q Consensus 161 ~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~ 237 (463)
.+|. .++++++|++|++++|+++|.+| .+.++++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 7887 88889999999999998888888 7777778888888888777 67777777777 777777777777 6666
Q ss_pred hhcCCC--CcCEEeccCCCCCCCCchhhh-------cCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCc
Q 044868 238 TIGQLG--MLQKLDLSSNSLTGSIPDSID-------KLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLP 308 (463)
Q Consensus 238 ~l~~l~--~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~ 308 (463)
.+..++ +|++|++++|.+++.+|..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+....+
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 665543 677777777777766666665 55666666666666663222234446666666666666652222
Q ss_pred hhhhCC-------CCCCEEeccCCCCCCCCccccC--CCCcccEEEcccccCCCCchhhhCCCCCCCeEEc------cCC
Q 044868 309 VEFGIL-------VKLQELRLANSGYSGSIPPSFS--QLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNL------SRN 373 (463)
Q Consensus 309 ~~l~~l-------~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L------~~N 373 (463)
..+... ++|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|+| ++|
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 222222 15666666666665 4555544 55666666666666654 5555555566666665 345
Q ss_pred CCCccCCCCchhhhccCCeEeccCCCC
Q 044868 374 FLDGVVPFNSSFLKRLGRNLDLSGNPG 400 (463)
Q Consensus 374 ~l~~~~p~~~~~l~~L~~~L~L~~N~~ 400 (463)
++.+.+|..+..++.| ++|++++|++
T Consensus 553 ~l~~~~p~~l~~l~~L-~~L~Ls~N~l 578 (636)
T 4eco_A 553 RTLREWPEGITLCPSL-TQLQIGSNDI 578 (636)
T ss_dssp BCCCCCCTTGGGCSSC-CEEECCSSCC
T ss_pred cccccChHHHhcCCCC-CEEECCCCcC
Confidence 5555555555555555 5566665555
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-34 Score=304.48 Aligned_cols=166 Identities=22% Similarity=0.220 Sum_probs=138.2
Q ss_pred cCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCC--CchhhhCCCCCcEeecCCCCCCCCCch-hhhCCCC
Q 044868 240 GQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN--FPKGLAKLQSLQYFLMDDNPMFIPLPV-EFGILVK 316 (463)
Q Consensus 240 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~ 316 (463)
..+++|++|++++|++++.+|..+.++++|++|++++|++++. +|..+.++++|++|++++|.+.+.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5677888888888888887888888888888888888888852 345678888888888888888874554 4777888
Q ss_pred CCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEecc
Q 044868 317 LQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLS 396 (463)
Q Consensus 317 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~ 396 (463)
|++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..++.+ +.++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L-~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSL-QYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTC-CCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCC-CEEEec
Confidence 89999999988877766554 68999999999998 788878899999999999999995444448888999 999999
Q ss_pred CCCCCCCCccccc
Q 044868 397 GNPGLCLNPAEAY 409 (463)
Q Consensus 397 ~N~~~c~~~~~~~ 409 (463)
+|||.|+|+..|+
T Consensus 506 ~N~~~c~c~~~~~ 518 (562)
T 3a79_B 506 DNPWDCTCPGIRY 518 (562)
T ss_dssp SCCBCCCHHHHHH
T ss_pred CCCcCCCcchHHH
Confidence 9999999998775
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=314.47 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=50.6
Q ss_pred cCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCch-------------------hhhccCCeEec
Q 044868 335 FSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSS-------------------FLKRLGRNLDL 395 (463)
Q Consensus 335 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-------------------~l~~L~~~L~L 395 (463)
+..+++|++|+|++|++++..|..+..+++|+.|+|++|++++..+..+. .+..+ +.+++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L-~~l~l 554 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSL-SVLDI 554 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSC-CEEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCc-CEEEe
Confidence 44455666666666666665666666777777777777777655443321 12356 78899
Q ss_pred cCCCCCCCCccccccc
Q 044868 396 SGNPGLCLNPAEAYSV 411 (463)
Q Consensus 396 ~~N~~~c~~~~~~~~~ 411 (463)
++||+.|+|+..+|..
T Consensus 555 ~~Np~~C~c~~~~f~~ 570 (844)
T 3j0a_A 555 THNKFICECELSTFIN 570 (844)
T ss_dssp EEECCCCSSSCCSHHH
T ss_pred cCCCcccccccHHHHH
Confidence 9999999999877544
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.5e-34 Score=302.09 Aligned_cols=315 Identities=18% Similarity=0.143 Sum_probs=228.8
Q ss_pred ccceEeCCCC------CCcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCcc
Q 044868 76 WPGIECKQGN------DGYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQ 149 (463)
Q Consensus 76 w~gv~C~~~~------~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~ 149 (463)
+..|.|...+ .-..+++.|+|++. .+.+..|..+.++++|++|++++|.+ .+..|..+.++++ |+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n-----~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~--L~ 84 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFN-----VLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHR--LD 84 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTC-----CCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTT--CC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCC-----ccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccc--cC
Confidence 5568886532 11247889999753 45566677888999999999998865 4556777888887 99
Q ss_pred EEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccC
Q 044868 150 QLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYN 229 (463)
Q Consensus 150 ~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 229 (463)
+|++++| .+.+..|..|+++++|++|++++|++++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|
T Consensus 85 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 85 TLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp EEECTTC-CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred eeeCCCC-cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 9999988 788888888888888999998888888655667888888888888888888643334445788888888888
Q ss_pred cCCCCCchhhcCCCCcC--EEeccCCCCCC--------------------------------------------------
Q 044868 230 SLTGSIPSTIGQLGMLQ--KLDLSSNSLTG-------------------------------------------------- 257 (463)
Q Consensus 230 ~l~~~~p~~l~~l~~L~--~L~L~~n~l~~-------------------------------------------------- 257 (463)
.+++..+..++.+++|+ +|++++|.+++
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i 243 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCC
T ss_pred cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcccccccc
Confidence 87766666666666666 55665555443
Q ss_pred -------------------------CCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhh
Q 044868 258 -------------------------SIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFG 312 (463)
Q Consensus 258 -------------------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 312 (463)
..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+.
T Consensus 244 ~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 322 (606)
T 3t6q_A 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS 322 (606)
T ss_dssp CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh
Confidence 22333566677888888888777 6677777778888888888877777677777
Q ss_pred CCCCCCEEeccCCCCCCCCcc-ccCCCCcccEEEcccccCCCCc--hhhhCCCCCCCeEEccCCCCCccCCCCchhhhcc
Q 044868 313 ILVKLQELRLANSGYSGSIPP-SFSQLNNLSTLSLQNNRLTGEI--PVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRL 389 (463)
Q Consensus 313 ~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~--p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 389 (463)
.+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+..+++|++|++++|++++..|..+..++.+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTC
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccC
Confidence 777777777777777655554 3667777777777777777554 5566777777777777777777666666666676
Q ss_pred CCeEeccCCCCCC
Q 044868 390 GRNLDLSGNPGLC 402 (463)
Q Consensus 390 ~~~L~L~~N~~~c 402 (463)
+.|++++|++..
T Consensus 403 -~~L~l~~n~l~~ 414 (606)
T 3t6q_A 403 -ELLDLAFTRLKV 414 (606)
T ss_dssp -SEEECTTCCEEC
T ss_pred -CeEECCCCcCCC
Confidence 677777776543
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-34 Score=306.28 Aligned_cols=271 Identities=24% Similarity=0.254 Sum_probs=200.1
Q ss_pred cccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCC----------------------------CCCCCccc
Q 044868 139 SADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNR----------------------------LNGQIPVK 190 (463)
Q Consensus 139 ~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~----------------------------l~~~~p~~ 190 (463)
.+..+++ |++|++++| .+.+..|..|.++++|++|++++|. +++..|..
T Consensus 324 ~~~~l~~--L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 324 SFQWLKC--LEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp TTTTCTT--CCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred hcccCCC--CCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 3444555 777777777 6666666666666666666665543 33333444
Q ss_pred cCCCCCCcEEEcccCCCCCCCc-hhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCC--CCCchhhhcCC
Q 044868 191 IFSLNSLVHLDLSYNLLAGTIP-VQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLT--GSIPDSIDKLS 267 (463)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~ 267 (463)
+..+++|++|++++|.+.+.+| ..+.++++|++|++++|++.+..+..+..+++|++|++++|.++ +.+|..+.+++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 5555566666666666554443 45555666666666666655555556666666666666666664 46777888899
Q ss_pred CCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC--------chhhhCCCCCCEEeccCCCCCCCCccccCCCC
Q 044868 268 LLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL--------PVEFGILVKLQELRLANSGYSGSIPPSFSQLN 339 (463)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--------~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 339 (463)
+|++|++++|++++..+..+..+++|++|++++|.+.+.. +..+..+++|++|+|++|+++...+..|..++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~ 560 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc
Confidence 9999999999999777777899999999999999887542 22378889999999999999954445789999
Q ss_pred cccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCch-hhhccCCeEeccCCCCCCCCcc-ccccccc
Q 044868 340 NLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSS-FLKRLGRNLDLSGNPGLCLNPA-EAYSVKI 413 (463)
Q Consensus 340 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~~L~L~~N~~~c~~~~-~~~~~~~ 413 (463)
+|++|+|++|++++..+..+..+++|+.|++++|++++..+..+. .++.+ +.+++++|||.|+|.. .||..+.
T Consensus 561 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L-~~l~l~~N~~~c~c~~~~~~~~~~ 635 (680)
T 1ziw_A 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL-TELDMRFNPFDCTCESIAWFVNWI 635 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC-SEEECTTCCCCBCCCCCSSEECCS
T ss_pred CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc-CEEEccCCCcccCCccHHHHHHHH
Confidence 999999999999976666788999999999999999988776666 67889 9999999999999986 7765543
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.1e-34 Score=303.74 Aligned_cols=343 Identities=23% Similarity=0.224 Sum_probs=249.8
Q ss_pred cceEeCCCC------CCcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccE
Q 044868 77 PGIECKQGN------DGYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQ 150 (463)
Q Consensus 77 ~gv~C~~~~------~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~ 150 (463)
..|.|...+ +-...++.|||+.+ .+++..+.++.++++|++|+|++|.+ .+..+..+.++++ |++
T Consensus 34 ~~~~c~~~~l~~vP~~lp~~~~~LdLs~N-----~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~--L~~ 104 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSH--LST 104 (635)
T ss_dssp TEEECTTSCCSSCCSSSCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTT--CCE
T ss_pred CEEECCCCCcCccCCCCCcCCCEEEeeCC-----CCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCC--CCE
Confidence 357786432 11236899999854 35554456899999999999999975 3333456888998 999
Q ss_pred EEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCC-CCchhcCCCCCCCEEEcccC
Q 044868 151 LSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAG-TIPVQVGNLRNLVGLDLSYN 229 (463)
Q Consensus 151 L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n 229 (463)
|+|++| .+.+..+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 105 L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 105 LILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp EECTTC-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCC-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 999999 8887777889999999999999999997666678999999999999999975 46788899999999999999
Q ss_pred cCCCCCchhhcCC-------------------------------------------------------------------
Q 044868 230 SLTGSIPSTIGQL------------------------------------------------------------------- 242 (463)
Q Consensus 230 ~l~~~~p~~l~~l------------------------------------------------------------------- 242 (463)
++++..+..+..+
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 8764333322111
Q ss_pred ----------------------------------------------------------------CCcCEEeccCCCCCCC
Q 044868 243 ----------------------------------------------------------------GMLQKLDLSSNSLTGS 258 (463)
Q Consensus 243 ----------------------------------------------------------------~~L~~L~L~~n~l~~~ 258 (463)
.+|+.|++.+|.+.+.
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 343 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 343 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSC
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCc
Confidence 1122222222211100
Q ss_pred Cc-------------------hhhhcCCCCCEEEeeCC------------------------------------------
Q 044868 259 IP-------------------DSIDKLSLLAFMALSNN------------------------------------------ 277 (463)
Q Consensus 259 ~p-------------------~~l~~l~~L~~L~L~~n------------------------------------------ 277 (463)
.+ .....+++|+.|+++.|
T Consensus 344 ~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~ 423 (635)
T 4g8a_A 344 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLE 423 (635)
T ss_dssp CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCC
T ss_pred CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccccccccccc
Confidence 00 00011233333333333
Q ss_pred --------------------------------CCCCCCchhhhCCCCCcEeecCCCCCC-CCCchhhhCCCCCCEEeccC
Q 044868 278 --------------------------------KLTGNFPKGLAKLQSLQYFLMDDNPMF-IPLPVEFGILVKLQELRLAN 324 (463)
Q Consensus 278 --------------------------------~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~ 324 (463)
.+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|+|++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence 333333344455566777777777643 34567788899999999999
Q ss_pred CCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhh-hccCCeEeccCCCCCCC
Q 044868 325 SGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFL-KRLGRNLDLSGNPGLCL 403 (463)
Q Consensus 325 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~~L~L~~N~~~c~ 403 (463)
|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|+|++..|..+..+ +.| ++|++++|||.|+
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L-~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQNDFACT 582 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC-CEEECTTCCBCCS
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC-CEEEeeCCCCccc
Confidence 99999999999999999999999999998888899999999999999999999999888877 578 9999999999999
Q ss_pred CcccccccccC--------CccccCCCCCCCCCcc
Q 044868 404 NPAEAYSVKIG--------IGVSICGSNKNGSLIK 430 (463)
Q Consensus 404 ~~~~~~~~~~~--------~~~~~C~~~~~~~~~~ 430 (463)
|...||..++. .....|..+....+..
T Consensus 583 C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~ 617 (635)
T 4g8a_A 583 CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 617 (635)
T ss_dssp GGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCB
T ss_pred CCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCE
Confidence 99888654332 1223576655554443
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=300.90 Aligned_cols=146 Identities=25% Similarity=0.323 Sum_probs=121.5
Q ss_pred hhcCCCCCEEEeeCCCCCCCCc-hhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCC-CCCccccCCCCc
Q 044868 263 IDKLSLLAFMALSNNKLTGNFP-KGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS-GSIPPSFSQLNN 340 (463)
Q Consensus 263 l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~ 340 (463)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 3344455555555555554433 35677888888888888888888888888999999999999987 578888999999
Q ss_pred ccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCccccc
Q 044868 341 LSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAY 409 (463)
Q Consensus 341 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~ 409 (463)
|++|++++|++++..|..+..+++|++|++++|++++..+..+..++.+ +.|++++|++.|.|+..++
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCCTTTTHH
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC-cEEEecCCcccCCCcchHH
Confidence 9999999999998889999999999999999999999888888899999 9999999999999987654
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-34 Score=288.15 Aligned_cols=284 Identities=20% Similarity=0.179 Sum_probs=231.0
Q ss_pred cccccc-ccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCC
Q 044868 108 ATFPYQ-IFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQ 186 (463)
Q Consensus 108 g~l~~~-l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 186 (463)
+.+|+. +.++++|++|++++|.+ .+..+..+..+++ |++|++++| .+.+..|..++++++|++|++++|.++ .
T Consensus 58 ~~l~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~--L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~ 131 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHT--IQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLS-S 131 (390)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTT--CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred hhCChhHhcccccCcEEECCCCcc--cccChhhccCCCC--cCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCccC-c
Confidence 456655 57799999999999875 3444457888888 999999999 888888888999999999999999998 4
Q ss_pred Cccc-cCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEec---------------
Q 044868 187 IPVK-IFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDL--------------- 250 (463)
Q Consensus 187 ~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L--------------- 250 (463)
+|.. +.++++|++|++++|.+.+..+..+..+++|++|++++|++++.. +..+++|++|++
T Consensus 132 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcce
Confidence 5554 578999999999999999777888999999999999999988542 333445544444
Q ss_pred ----cCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCC
Q 044868 251 ----SSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSG 326 (463)
Q Consensus 251 ----~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 326 (463)
++|.++. +|. ...++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|+
T Consensus 209 ~L~l~~n~l~~-~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (390)
T 3o6n_A 209 ELDASHNSINV-VRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283 (390)
T ss_dssp EEECCSSCCCE-EEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC
T ss_pred EEECCCCeeee-ccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc
Confidence 4444442 222 1246889999999998853 578999999999999999999889999999999999999999
Q ss_pred CCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 327 YSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 327 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
+++ +|..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++.. + +..++.+ +.|++++|++.|.+..
T Consensus 284 l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L-~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL-KNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC-SEEECCSSCEEHHHHH
T ss_pred Ccc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC-CEEEcCCCCccchhHH
Confidence 985 5667788999999999999999 6777788899999999999999865 3 5567888 9999999999998877
Q ss_pred ccccc
Q 044868 407 EAYSV 411 (463)
Q Consensus 407 ~~~~~ 411 (463)
.++..
T Consensus 358 ~~~~~ 362 (390)
T 3o6n_A 358 ALFRN 362 (390)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 66543
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.9e-34 Score=302.05 Aligned_cols=287 Identities=20% Similarity=0.152 Sum_probs=236.4
Q ss_pred cccccc-ccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCC
Q 044868 108 ATFPYQ-IFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQ 186 (463)
Q Consensus 108 g~l~~~-l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 186 (463)
+.+|+. +.++++|++|++++|.+ .+..|..++.+++ |++|+|++| .+.+..|..|+++++|++|+|++|.+++.
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~--L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l 138 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHT--IQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSL 138 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCC--CEECTTTTTTCTT--CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCHHHHccCCCCcEEECCCCCC--CCCChHHhcCCCC--CCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeCCCCCCC
Confidence 456654 57799999999999875 4555568888888 999999999 88888888889999999999999999854
Q ss_pred CccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCC---------
Q 044868 187 IPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTG--------- 257 (463)
Q Consensus 187 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--------- 257 (463)
.+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 139 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~ 215 (597)
T 3oja_B 139 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEE 215 (597)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSE
T ss_pred CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhhe
Confidence 4445688999999999999999888888999999999999999988643 3344555555555554432
Q ss_pred ---------CCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCC
Q 044868 258 ---------SIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 258 ---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 328 (463)
.++.. ..++|+.|++++|.+++ +..+..+++|++|+|++|.+.+..|..++.+++|++|+|++|.++
T Consensus 216 L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 216 LDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp EECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred eeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 11211 13578999999999886 367899999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcccc
Q 044868 329 GSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEA 408 (463)
Q Consensus 329 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~ 408 (463)
+ +|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+++.. +..++.| +.|++++|+|.|.+...+
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L-~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL-KNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC-SEEECCSSCEEHHHHHHH
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCC-CEEEeeCCCCCChhHHHH
Confidence 5 5777788999999999999999 68888889999999999999998663 4567788 999999999999887766
Q ss_pred cccc
Q 044868 409 YSVK 412 (463)
Q Consensus 409 ~~~~ 412 (463)
+...
T Consensus 366 ~~~~ 369 (597)
T 3oja_B 366 FRNV 369 (597)
T ss_dssp TTTC
T ss_pred HHHH
Confidence 5433
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-35 Score=288.22 Aligned_cols=235 Identities=34% Similarity=0.549 Sum_probs=182.8
Q ss_pred cccccccCCCCccEEEccC-CCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhc
Q 044868 137 SVSADRLYNSSLQQLSLRS-NPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQV 215 (463)
Q Consensus 137 p~~~~~l~~~~L~~L~Ls~-n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 215 (463)
|..+.++++ |++|++++ | .+.+.+|..|+++++|++|++++|++++.+|..+.++++|++|++++|.+++.+|..+
T Consensus 69 ~~~l~~l~~--L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 69 PSSLANLPY--LNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp CGGGGGCTT--CSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ChhHhCCCC--CCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 334444444 55555553 4 5666777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCEEEcccCcCCCCCchhhcCCC-CcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCc
Q 044868 216 GNLRNLVGLDLSYNSLTGSIPSTIGQLG-MLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQ 294 (463)
Q Consensus 216 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 294 (463)
..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+++.+|..+..+++|+
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 7777888888888877777777777776 788888888888777777777776 88888888888877777888888888
Q ss_pred EeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCC
Q 044868 295 YFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNF 374 (463)
Q Consensus 295 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 374 (463)
+|++++|.+.+.++. +..+++|++|++++|++++.+|..+..+++|++|+|++|+++|.+|.. ..+++|+.+++++|+
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 888888888776665 677888899999999988888888888899999999999998888876 778889999999987
Q ss_pred -CCc
Q 044868 375 -LDG 377 (463)
Q Consensus 375 -l~~ 377 (463)
+.|
T Consensus 303 ~lc~ 306 (313)
T 1ogq_A 303 CLCG 306 (313)
T ss_dssp EEES
T ss_pred CccC
Confidence 554
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.7e-34 Score=291.66 Aligned_cols=288 Identities=21% Similarity=0.181 Sum_probs=260.0
Q ss_pred cccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCc
Q 044868 109 TFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIP 188 (463)
Q Consensus 109 ~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 188 (463)
.+|..+. +++++|++++|.+ .+..+..+.++++ |++|+|++| .+.+..|..|+++++|++|+|++|++++..+
T Consensus 25 ~ip~~~~--~~l~~L~L~~n~l--~~~~~~~~~~l~~--L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 25 AVPEGIP--TETRLLDLGKNRI--KTLNQDEFASFPH--LEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp SCCSCCC--TTCSEEECCSSCC--CEECTTTTTTCTT--CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred cCCCCCC--CCCcEEECCCCcc--ceECHhHccCCCC--CCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 4565553 6899999999876 4455678889988 999999999 8998889999999999999999999995555
Q ss_pred cccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCC
Q 044868 189 VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSL 268 (463)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 268 (463)
..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+.++++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 56789999999999999999888899999999999999999999888889999999999999999999877778999999
Q ss_pred CCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEccc
Q 044868 269 LAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQN 348 (463)
Q Consensus 269 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 348 (463)
|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++.......+|++|++++|++++..+..+..+++|++|+|++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 99999999999988888899999999999999998888887777777999999999999965556889999999999999
Q ss_pred ccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCC
Q 044868 349 NRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLN 404 (463)
Q Consensus 349 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~ 404 (463)
|++++..+..+..+++|++|+|++|++++..|..+..++.| +.|++++|.+....
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL-RVLNVSGNQLTTLE 312 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC-CEEECCSSCCSCCC
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC-CEEECCCCcCceeC
Confidence 99998778889999999999999999999999999999999 99999999876543
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.1e-34 Score=311.90 Aligned_cols=311 Identities=23% Similarity=0.204 Sum_probs=231.0
Q ss_pred CccceEeCCCCCCcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccc-cccccccCCCCccEEEc
Q 044868 75 SWPGIECKQGNDGYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTL-SVSADRLYNSSLQQLSL 153 (463)
Q Consensus 75 ~w~gv~C~~~~~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~i-p~~~~~l~~~~L~~L~L 153 (463)
.|..|-+ - ..+++.|+|+.+ .+.+..|..+.++++|++|++++|.. .+.+ |..+.++++ |++|+|
T Consensus 15 ~L~~vP~-l----p~~l~~LdLs~N-----~i~~i~~~~~~~l~~L~~LdLs~n~~--~~~i~~~~f~~L~~--L~~L~L 80 (844)
T 3j0a_A 15 NLTQVPQ-V----LNTTERLLLSFN-----YIRTVTASSFPFLEQLQLLELGSQYT--PLTIDKEAFRNLPN--LRILDL 80 (844)
T ss_dssp CSSCCCS-S----CTTCCEEEEESC-----CCCEECSSSCSSCCSCSEEEECTTCC--CCEECTTTTSSCTT--CCEEEC
T ss_pred CCCCCCC-C----CCCcCEEECCCC-----cCCccChhHCcccccCeEEeCCCCCC--ccccCHHHhcCCCC--CCEEEC
Confidence 4777766 2 247899999743 46677788899999999999999854 4556 677889988 999999
Q ss_pred cCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccc--cCCCCCCcEEEcccCCCCCCCc-hhcCCCCCCCEEEcccCc
Q 044868 154 RSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVK--IFSLNSLVHLDLSYNLLAGTIP-VQVGNLRNLVGLDLSYNS 230 (463)
Q Consensus 154 s~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~ 230 (463)
++| .+.+..|..|+++++|++|+|++|.+++.+|.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.
T Consensus 81 s~N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 81 GSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp TTC-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CCC-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 999 888888999999999999999999998767665 8899999999999999987654 578999999999999999
Q ss_pred CCCCCchhhcCC--CCcCEEeccCCCCCCCCchhhhcCCC------CCEEEeeCCCCCCCCchhhhC-------------
Q 044868 231 LTGSIPSTIGQL--GMLQKLDLSSNSLTGSIPDSIDKLSL------LAFMALSNNKLTGNFPKGLAK------------- 289 (463)
Q Consensus 231 l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~------------- 289 (463)
+++..+..+..+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++.++..+..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 988878777766 67777777777777766655554444 677777777665544433221
Q ss_pred -------------------------CCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEE
Q 044868 290 -------------------------LQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTL 344 (463)
Q Consensus 290 -------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 344 (463)
.++|++|++++|.+.+..+..+..+++|++|+|++|++++..|..+..+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 1456677777777666666666666777777777777766666666666777777
Q ss_pred EcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCC
Q 044868 345 SLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGL 401 (463)
Q Consensus 345 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~ 401 (463)
+|++|++++..|..+..+++|++|++++|++++..+..+..+++| +.|++++|.+.
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L-~~L~Ls~N~l~ 375 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-QTLDLRDNALT 375 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC-CEEEEETCCSC
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC-CEEECCCCCCC
Confidence 777777766666666666777777777777666666556666666 66666666543
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-33 Score=307.45 Aligned_cols=292 Identities=21% Similarity=0.249 Sum_probs=198.2
Q ss_pred ccEEEEECCCCCCCCCCccc-----------------ccccccc--CCCCCCEEEcccCCCCCcccccccccccCCCCcc
Q 044868 89 LHVTRLDFGTRPNPTCKKTA-----------------TFPYQIF--SLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQ 149 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g-----------------~l~~~l~--~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~ 149 (463)
.+++.|+|+++ .+.| .+|+.++ ++++|++|++++|.+ .+.+|..++++++ |+
T Consensus 448 ~~L~~L~Ls~N-----~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l--~~~iP~~l~~L~~--L~ 518 (876)
T 4ecn_A 448 TKLQIIYFANS-----PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN--MTQLPDFLYDLPE--LQ 518 (876)
T ss_dssp TTCCEEEEESC-----CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT--CCSCCGGGGGCSS--CC
T ss_pred CCCCEEECcCC-----cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC--CccChHHHhCCCC--CC
Confidence 36778888643 3455 4888888 899999999998865 6788888888888 99
Q ss_pred EEEccCCCC-CCC-CCchhcCCCC-------CCcEEEeecCCCCCCCcc--ccCCCCCCcEEEcccCCCCCCCchhcCCC
Q 044868 150 QLSLRSNPA-LVG-PIPPQISSLK-------FLQILTLSQNRLNGQIPV--KIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218 (463)
Q Consensus 150 ~L~Ls~n~~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 218 (463)
+|+|++| . +++ .+|..+++++ +|++|+|++|+++ .+|. .+.++++|++|++++|+++ .+| .++.+
T Consensus 519 ~L~Ls~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 519 SLNIACN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp EEECTTC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred EEECcCC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 9999988 6 777 7787665554 8888888888888 7887 7888888888888888888 777 78888
Q ss_pred CCCCEEEcccCcCCCCCchhhcCCCC-cCEEeccCCCCCCCCchhhhcCCC--CCEEEeeCCCCCCCCchh---hh--CC
Q 044868 219 RNLVGLDLSYNSLTGSIPSTIGQLGM-LQKLDLSSNSLTGSIPDSIDKLSL--LAFMALSNNKLTGNFPKG---LA--KL 290 (463)
Q Consensus 219 ~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~---l~--~l 290 (463)
++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|.+.+.+|.. +. .+
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~ 672 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccC
Confidence 88888888888888 77777888887 888888888877 66766655543 777777777766544421 11 22
Q ss_pred CCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCC--------CCcccEEEcccccCCCCchhhhC--
Q 044868 291 QSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQ--------LNNLSTLSLQNNRLTGEIPVVFG-- 360 (463)
Q Consensus 291 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~l~-- 360 (463)
++|++|++++|.+....+..+..+++|+.|+|++|+++ .+|..+.. +++|++|+|++|+++ .+|..+.
T Consensus 673 ~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred CCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence 35666666666665322222335556666666666555 34433222 125556666666555 4555554
Q ss_pred CCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCC
Q 044868 361 SLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNP 399 (463)
Q Consensus 361 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~ 399 (463)
.+++|+.|+|++|++++ +|..+..++.| +.|++++|+
T Consensus 751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~N~ 787 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRHQR 787 (876)
T ss_dssp TCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEECCCCB
T ss_pred cCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEECCCCC
Confidence 55556666666665554 45555555555 555555533
No 27
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.7e-32 Score=268.91 Aligned_cols=269 Identities=19% Similarity=0.181 Sum_probs=185.0
Q ss_pred CCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCC
Q 044868 118 SYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSL 197 (463)
Q Consensus 118 ~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 197 (463)
++|++|++++|.+ .+..+..+.++++ |++|++++| .+.+..|..++++++|++|++++|+++ .+|..+. ++|
T Consensus 52 ~~l~~L~L~~n~i--~~~~~~~~~~l~~--L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNKI--TEIKDGDFKNLKN--LHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTL 123 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTT--CCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTC
T ss_pred CCCeEEECCCCcC--CEeChhhhccCCC--CCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccc
Confidence 5677788877764 2333345667776 777887777 677666777777777888888777776 5665544 677
Q ss_pred cEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCC--CCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEee
Q 044868 198 VHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTG--SIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALS 275 (463)
Q Consensus 198 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 275 (463)
++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|+++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLD 200 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECT
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECC
Confidence 777777777776666667777777777777777753 556667777777777777777763 444432 677777777
Q ss_pred CCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCc
Q 044868 276 NNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEI 355 (463)
Q Consensus 276 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 355 (463)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..
T Consensus 201 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccC
Confidence 77777666677777777777777777777766667777777777777777777 66667777777777777777777554
Q ss_pred hhhhCC------CCCCCeEEccCCCCCc--cCCCCchhhhccCCeEeccCCC
Q 044868 356 PVVFGS------LSHIYHLNLSRNFLDG--VVPFNSSFLKRLGRNLDLSGNP 399 (463)
Q Consensus 356 p~~l~~------l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~~L~L~~N~ 399 (463)
+..+.. .+.++.+++++|.+.. ..|..+..+..+ +.+++++|+
T Consensus 280 ~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l-~~l~L~~N~ 330 (330)
T 1xku_A 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR-AAVQLGNYK 330 (330)
T ss_dssp TTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG-GGEEC----
T ss_pred hhhcCCcccccccccccceEeecCcccccccCccccccccce-eEEEecccC
Confidence 444432 2567777777777653 334455555666 677777763
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-32 Score=295.04 Aligned_cols=313 Identities=22% Similarity=0.174 Sum_probs=245.9
Q ss_pred ccceEeCCCC------CCcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCcc
Q 044868 76 WPGIECKQGN------DGYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQ 149 (463)
Q Consensus 76 w~gv~C~~~~------~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~ 149 (463)
+..|.|...+ .-..+++.|+|++. .+.+..+..+.++++|++|++++|.+ .+..|..++++++ |+
T Consensus 6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~--L~ 76 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLPTNITVLNLTHN-----QLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPM--LK 76 (680)
T ss_dssp SSEEECCSSCCSSCCSCSCTTCSEEECCSS-----CCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTT--CC
T ss_pred CCeeECCCCCccccccccCCCCcEEECCCC-----CCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccC--cC
Confidence 5556675422 11247899999753 35555566799999999999999875 5566778889988 99
Q ss_pred EEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccC
Q 044868 150 QLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYN 229 (463)
Q Consensus 150 ~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 229 (463)
+|++++| .+.+..+..|+++++|++|++++|++++..|..++++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 77 ~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 77 VLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred EEECCCC-ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 9999999 787665567999999999999999998766778999999999999999999888888999999999999999
Q ss_pred cCCCCCchhhc--CCCCcCEEeccCCCCCCCCchhhhcC---------------------------CCCCEEEeeCCCCC
Q 044868 230 SLTGSIPSTIG--QLGMLQKLDLSSNSLTGSIPDSIDKL---------------------------SLLAFMALSNNKLT 280 (463)
Q Consensus 230 ~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l---------------------------~~L~~L~L~~n~l~ 280 (463)
.+++..+..+. .+++|++|++++|.+++..|..+..+ ++|+.|++++|.++
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 99977776654 56899999999999988777666543 56777778888888
Q ss_pred CCCchhhhCCCC--CcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCC----
Q 044868 281 GNFPKGLAKLQS--LQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGE---- 354 (463)
Q Consensus 281 ~~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~---- 354 (463)
+..|..+..++. |++|++++|.+.+..+..++.+++|++|++++|.+++..|..+..+++|++|++++|...+.
T Consensus 236 ~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 315 (680)
T 1ziw_A 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315 (680)
T ss_dssp EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----
T ss_pred ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccc
Confidence 777777777654 88888888888887778888888888888888888877777777777777777777654432
Q ss_pred -chh----hhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCC
Q 044868 355 -IPV----VFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNP 399 (463)
Q Consensus 355 -~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~ 399 (463)
+|. .+..+++|++|++++|++++..+..+..++.+ ++|++++|.
T Consensus 316 ~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~ 364 (680)
T 1ziw_A 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL-KYLSLSNSF 364 (680)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTC-CEEECTTCB
T ss_pred cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCC-cEEECCCCc
Confidence 222 56667777777777777777777666677777 677777664
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-33 Score=288.18 Aligned_cols=294 Identities=21% Similarity=0.184 Sum_probs=227.3
Q ss_pred ccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcC
Q 044868 89 LHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQIS 168 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~ 168 (463)
.+++.|+|++ +.+.+..|..+.++++|++|++++|.+ .+..|..++.+++ |++|++++| .+. .+|..
T Consensus 21 ~~L~~L~Ls~-----n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~--L~~L~Ls~N-~l~-~lp~~-- 87 (520)
T 2z7x_B 21 QKTTILNISQ-----NYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQE--LEYLDLSHN-KLV-KISCH-- 87 (520)
T ss_dssp TTCSEEECCS-----SCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTT--CCEEECCSS-CCC-EEECC--
T ss_pred ccccEEECCC-----CcccccChhhccccccccEEecCCCcc--CCcChHHhhcccC--CCEEecCCC-cee-ecCcc--
Confidence 4788999974 345566667889999999999999875 4556788899988 999999999 777 56765
Q ss_pred CCCCCcEEEeecCCCCC-CCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCC--CEEEcccCcC--CCCCchhhcCCC
Q 044868 169 SLKFLQILTLSQNRLNG-QIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNL--VGLDLSYNSL--TGSIPSTIGQLG 243 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~ 243 (463)
.+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999986 578899999999999999999885 356677777 9999999998 666666555532
Q ss_pred --------------------------------------------------------------------------------
Q 044868 244 -------------------------------------------------------------------------------- 243 (463)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (463)
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~ 244 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence
Q ss_pred ---CcCEEeccCCCCCCCCchhh-----------------------------------------------------hcCC
Q 044868 244 ---MLQKLDLSSNSLTGSIPDSI-----------------------------------------------------DKLS 267 (463)
Q Consensus 244 ---~L~~L~L~~n~l~~~~p~~l-----------------------------------------------------~~l~ 267 (463)
+|++|++++|+++|.+|..+ ..++
T Consensus 245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~ 324 (520)
T 2z7x_B 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324 (520)
T ss_dssp HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC
Confidence 67777777777776666554 4566
Q ss_pred CCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCC--CCchhhhCCCCCCEEeccCCCCCCCCcc-ccCCCCcccEE
Q 044868 268 LLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFI--PLPVEFGILVKLQELRLANSGYSGSIPP-SFSQLNNLSTL 344 (463)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 344 (463)
+|++|++++|.+++.+|..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+++.+|. .+..+++|++|
T Consensus 325 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L 404 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404 (520)
T ss_dssp CCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE
T ss_pred cccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE
Confidence 77777777777777677777777788888888887776 4556677778888888888888765555 36677788888
Q ss_pred EcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCC
Q 044868 345 SLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 345 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c 402 (463)
++++|++++.+|..+. ++|++|++++|+++ .+|..+..++.+ ++|++++|++..
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~~ 458 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEAL-QELNVASNQLKS 458 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTC-CEEECCSSCCCC
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCC-CEEECCCCcCCc
Confidence 8888888777666554 67888888888887 666666677788 788888887764
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-32 Score=270.40 Aligned_cols=275 Identities=23% Similarity=0.232 Sum_probs=210.2
Q ss_pred cccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCc
Q 044868 109 TFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIP 188 (463)
Q Consensus 109 ~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 188 (463)
.+|..+. ++|++|++++|.+ .+..|..+.++++ |++|++++| .+.+..|..++++++|++|++++|+++ .+|
T Consensus 47 ~ip~~~~--~~l~~L~l~~n~i--~~~~~~~~~~l~~--L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~ 118 (332)
T 2ft3_A 47 AVPKEIS--PDTTLLDLQNNDI--SELRKDDFKGLQH--LYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLV-EIP 118 (332)
T ss_dssp SCCSCCC--TTCCEEECCSSCC--CEECTTTTTTCTT--CCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCC-SCC
T ss_pred ccCCCCC--CCCeEEECCCCcC--CccCHhHhhCCCC--CcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCC-ccC
Confidence 3454442 6788888888765 3334556778877 888888888 788777888888888888888888887 667
Q ss_pred cccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCC--CCCchhhcCCCCcCEEeccCCCCCCCCchhhhcC
Q 044868 189 VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLT--GSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKL 266 (463)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 266 (463)
..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|++++ +|..+.
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-- 192 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-- 192 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--
Confidence 6655 78888888888888666666888888888888888885 3566677776 88888888888874 555443
Q ss_pred CCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEc
Q 044868 267 SLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSL 346 (463)
Q Consensus 267 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 346 (463)
++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 68888888888888777777888888888888888888877777888888888888888888 67777888888888888
Q ss_pred ccccCCCCchhhhCC------CCCCCeEEccCCCCC--ccCCCCchhhhccCCeEeccCCC
Q 044868 347 QNNRLTGEIPVVFGS------LSHIYHLNLSRNFLD--GVVPFNSSFLKRLGRNLDLSGNP 399 (463)
Q Consensus 347 s~N~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~~L~L~~N~ 399 (463)
++|++++..+..+.. .++|+.|++++|.+. +..|..+..++.+ +.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L-~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR-LAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS-TTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchh-hhhhccccc
Confidence 888888665555544 356788888888877 5566667777777 788888775
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-32 Score=287.30 Aligned_cols=294 Identities=18% Similarity=0.156 Sum_probs=222.7
Q ss_pred ccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcC
Q 044868 89 LHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQIS 168 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~ 168 (463)
.+++.|++++. .+.+..+..+.++++|++|++++|.+ .+..|..+..+++ |++|++++| .+. .+|..
T Consensus 52 ~~L~~L~Ls~N-----~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~--L~~L~Ls~N-~l~-~lp~~-- 118 (562)
T 3a79_B 52 PRTKALSLSQN-----SISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQD--LEYLDVSHN-RLQ-NISCC-- 118 (562)
T ss_dssp TTCCEEECCSS-----CCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTT--CCEEECTTS-CCC-EECSC--
T ss_pred CCcCEEECCCC-----CccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCC--CCEEECCCC-cCC-ccCcc--
Confidence 36778888643 34555556788888888888888765 3445666777777 888888888 665 55655
Q ss_pred CCCCCcEEEeecCCCCC-CCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCC--CEEEcccCcC--CCCCchhhcCCC
Q 044868 169 SLKFLQILTLSQNRLNG-QIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNL--VGLDLSYNSL--TGSIPSTIGQLG 243 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~ 243 (463)
.+++|++|++++|++++ .+|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccC
Confidence 78888888888888875 3456777888888888888887653 23334444 7777777776 544444443322
Q ss_pred --------------------------------------------------------------------------------
Q 044868 244 -------------------------------------------------------------------------------- 243 (463)
Q Consensus 244 -------------------------------------------------------------------------------- 243 (463)
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~ 275 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhc
Confidence
Q ss_pred -CcCEEeccCCCCCCCCchhh-----------------------------------------------------hcCCCC
Q 044868 244 -MLQKLDLSSNSLTGSIPDSI-----------------------------------------------------DKLSLL 269 (463)
Q Consensus 244 -~L~~L~L~~n~l~~~~p~~l-----------------------------------------------------~~l~~L 269 (463)
+|++|++++|.++|.+|..+ ..+++|
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L 355 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCc
Confidence 56666666666666555543 567899
Q ss_pred CEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCC--CchhhhCCCCCCEEeccCCCCCCCCcc-ccCCCCcccEEEc
Q 044868 270 AFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIP--LPVEFGILVKLQELRLANSGYSGSIPP-SFSQLNNLSTLSL 346 (463)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L 346 (463)
++|++++|.+++.+|..+.++++|++|++++|.+.+. +|..+..+++|++|++++|.+++.+|. .+..+++|++|++
T Consensus 356 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEEC
T ss_pred eEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEEC
Confidence 9999999999988888999999999999999999874 356788999999999999999985665 5788899999999
Q ss_pred ccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCC
Q 044868 347 QNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 347 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c 402 (463)
++|++++.+|..+. ++|++|++++|+++ .+|..+..++.+ ++|++++|.+..
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L-~~L~L~~N~l~~ 487 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL-QELNVASNQLKS 487 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC-SEEECCSSCCCC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC-CEEECCCCCCCC
Confidence 99999887776654 68999999999999 567666688899 999999999774
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-31 Score=262.77 Aligned_cols=269 Identities=21% Similarity=0.229 Sum_probs=236.3
Q ss_pred CCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCc
Q 044868 119 YLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLV 198 (463)
Q Consensus 119 ~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 198 (463)
++++++++++.. ..+|..+. + +|++|++++| .+.+..+..|+++++|++|++++|.+++..|..+.++++|+
T Consensus 32 ~l~~l~~~~~~l---~~lp~~~~--~--~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGL---EKVPKDLP--P--DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCC---CSCCCSCC--T--TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCeEEEecCCCc---cccCccCC--C--CCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 678888887754 45665543 3 4999999999 88887777899999999999999999987799999999999
Q ss_pred EEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCC--CCchhhhcCCCCCEEEeeC
Q 044868 199 HLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTG--SIPDSIDKLSLLAFMALSN 276 (463)
Q Consensus 199 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~ 276 (463)
+|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+.++++|++|++++
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS
T ss_pred EEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC
Confidence 9999999998 6676654 799999999999998888889999999999999999964 6778899999999999999
Q ss_pred CCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCch
Q 044868 277 NKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIP 356 (463)
Q Consensus 277 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 356 (463)
|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|
T Consensus 181 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 181 TNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp SCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred Cccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence 9998 4665543 79999999999999998999999999999999999999888888999999999999999999 888
Q ss_pred hhhCCCCCCCeEEccCCCCCccCCCCchh------hhccCCeEeccCCCCCCC
Q 044868 357 VVFGSLSHIYHLNLSRNFLDGVVPFNSSF------LKRLGRNLDLSGNPGLCL 403 (463)
Q Consensus 357 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~~L~L~~N~~~c~ 403 (463)
..+..+++|++|++++|++++..+..+.. ...+ +.+++++||+.+.
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l-~~l~l~~N~~~~~ 308 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY-SGVSLFSNPVQYW 308 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC-SEEECCSSSSCGG
T ss_pred hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc-cceEeecCccccc
Confidence 89999999999999999999877665532 2556 7999999998764
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.8e-32 Score=265.35 Aligned_cols=268 Identities=23% Similarity=0.251 Sum_probs=235.4
Q ss_pred CCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCc
Q 044868 119 YLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLV 198 (463)
Q Consensus 119 ~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 198 (463)
+++.++++++.. ..+|..+. +. |++|++++| .+.+..|..+.++++|++|++++|++++..|..+.++++|+
T Consensus 34 ~l~~l~~~~~~l---~~ip~~~~--~~--l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGL---KAVPKEIS--PD--TTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCC---SSCCSCCC--TT--CCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCc---cccCCCCC--CC--CeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 688999998764 46776653 34 999999999 88887788899999999999999999987788999999999
Q ss_pred EEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCC--CCCchhhhcCCCCCEEEeeC
Q 044868 199 HLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLT--GSIPDSIDKLSLLAFMALSN 276 (463)
Q Consensus 199 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~ 276 (463)
+|++++|.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 9999999998 6776655 89999999999999776777999999999999999996 3667777777 999999999
Q ss_pred CCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCch
Q 044868 277 NKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIP 356 (463)
Q Consensus 277 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 356 (463)
|.+++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|
T Consensus 182 n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 182 AKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp SBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred CCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence 99985 665554 79999999999999998889999999999999999999888888999999999999999999 888
Q ss_pred hhhCCCCCCCeEEccCCCCCccCCCCchhh------hccCCeEeccCCCCCCC
Q 044868 357 VVFGSLSHIYHLNLSRNFLDGVVPFNSSFL------KRLGRNLDLSGNPGLCL 403 (463)
Q Consensus 357 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~~L~L~~N~~~c~ 403 (463)
..+..+++|++|++++|++++..+..+... ..+ +.+++++||+.+.
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l-~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY-NGISLFNNPVPYW 309 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCB-SEEECCSSSSCGG
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccc-cceEeecCccccc
Confidence 889999999999999999998776655432 456 8999999998754
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.4e-32 Score=286.22 Aligned_cols=148 Identities=24% Similarity=0.273 Sum_probs=125.3
Q ss_pred ceEeCCCC------CCcccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEE
Q 044868 78 GIECKQGN------DGYLHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQL 151 (463)
Q Consensus 78 gv~C~~~~------~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L 151 (463)
.|.|...+ +-..+++.|+|++. .+.+..+..+.++++|++|++++|.+ .+..|..+.++++ |++|
T Consensus 15 ~~~c~~~~l~~ip~~~~~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~--L~~L 85 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDIPSSTKNIDLSFN-----PLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHH--LSNL 85 (606)
T ss_dssp EEECTTSCCSSCCTTSCTTCCEEECTTS-----CCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTT--CCEE
T ss_pred ceEccCCCcccCCCCCCCCcCEEECCCC-----CcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhh--cCEe
Confidence 57775432 12357899999753 45666677899999999999999875 4555778899998 9999
Q ss_pred EccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCC-CCchhcCCCCCCCEEEcccCc
Q 044868 152 SLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAG-TIPVQVGNLRNLVGLDLSYNS 230 (463)
Q Consensus 152 ~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~ 230 (463)
++++| .+.+..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|+
T Consensus 86 ~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 86 ILTGN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ECCCC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 99999 8998889999999999999999999997776889999999999999999986 679999999999999999998
Q ss_pred CCCCC
Q 044868 231 LTGSI 235 (463)
Q Consensus 231 l~~~~ 235 (463)
+++..
T Consensus 165 l~~~~ 169 (606)
T 3vq2_A 165 IQTIT 169 (606)
T ss_dssp CCEEC
T ss_pred ceecC
Confidence 77543
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1e-30 Score=257.81 Aligned_cols=267 Identities=23% Similarity=0.275 Sum_probs=166.7
Q ss_pred ccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCC
Q 044868 114 IFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFS 193 (463)
Q Consensus 114 l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 193 (463)
+..+++|++|++++|.+ ..++. +..+++ |++|++++| .+.+ ++ .+.++++|++|++++|.+.+ ++. +..
T Consensus 62 ~~~~~~L~~L~l~~n~i---~~~~~-~~~l~~--L~~L~L~~n-~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~ 130 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQI---TDISP-LSNLVK--LTNLYIGTN-KITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LAN 130 (347)
T ss_dssp GGGCTTCCEEECCSSCC---CCCGG-GTTCTT--CCEEECCSS-CCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTT
T ss_pred hhhcCCccEEEccCCcc---ccchh-hhcCCc--CCEEEccCC-cccC-ch-HHcCCCcCCEEECcCCcccC-chh-hcc
Confidence 56677777777777654 23333 556665 777777777 5544 23 46677777777777777663 333 666
Q ss_pred CCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEE
Q 044868 194 LNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMA 273 (463)
Q Consensus 194 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 273 (463)
+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 131 l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 205 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT 205 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceee
Confidence 7777777777775543333 36667777777777776663322 5666777777777776664322 56666677777
Q ss_pred eeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCC
Q 044868 274 LSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTG 353 (463)
Q Consensus 274 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 353 (463)
+++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++
T Consensus 206 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred cccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 77766664322 6666667777777766655433 56666677777776666642 345666666777777666664
Q ss_pred CchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 354 EIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 354 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
. ..+..+++|++|++++|++++..+..+..++.+ +.|++++|++....+
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL-TTLFLSQNHITDIRP 328 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC-SEEECCSSSCCCCGG
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC-CEEEccCCccccccC
Confidence 2 235566666777777666666666556666666 666776666555444
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.98 E-value=1e-32 Score=267.51 Aligned_cols=235 Identities=25% Similarity=0.246 Sum_probs=134.3
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCC--CCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEE
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNG--QIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLD 225 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 225 (463)
|++|++++| .+....+..+.++++|++|++++|.++. ..+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 30 l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 30 ATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 666666666 5553333346677777777777777662 22445556667777777776665 4555566666666666
Q ss_pred cccCcCCCCCc-hhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCC
Q 044868 226 LSYNSLTGSIP-STIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMF 304 (463)
Q Consensus 226 L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 304 (463)
+++|++++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------- 165 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------- 165 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------------------
Confidence 66666654332 3455555555555555555544444444445555555554444430
Q ss_pred CCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCch
Q 044868 305 IPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSS 384 (463)
Q Consensus 305 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 384 (463)
..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus 166 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 166 -FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp -EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred -cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 2344444555555555555555555555555556666666666666554444555566666666666666666555555
Q ss_pred hhh-ccCCeEeccCCCCCCCCcccc
Q 044868 385 FLK-RLGRNLDLSGNPGLCLNPAEA 408 (463)
Q Consensus 385 ~l~-~L~~~L~L~~N~~~c~~~~~~ 408 (463)
.++ .+ ++|++++|++.|+|...+
T Consensus 245 ~~~~~L-~~L~L~~N~~~~~c~~~~ 268 (306)
T 2z66_A 245 HFPSSL-AFLNLTQNDFACTCEHQS 268 (306)
T ss_dssp CCCTTC-CEEECTTCCEECSGGGHH
T ss_pred hhhccC-CEEEccCCCeecccChHH
Confidence 552 55 666666666666665444
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.98 E-value=1.7e-30 Score=256.25 Aligned_cols=280 Identities=23% Similarity=0.326 Sum_probs=238.2
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
+++.|++++. .+. .+++ +.++++|++|++++|.+. .++ .+..+++ |++|++++| .+.+. +. +..
T Consensus 67 ~L~~L~l~~n-----~i~-~~~~-~~~l~~L~~L~L~~n~i~---~~~-~~~~l~~--L~~L~l~~n-~i~~~-~~-~~~ 130 (347)
T 4fmz_A 67 NLEYLNLNGN-----QIT-DISP-LSNLVKLTNLYIGTNKIT---DIS-ALQNLTN--LRELYLNED-NISDI-SP-LAN 130 (347)
T ss_dssp TCCEEECCSS-----CCC-CCGG-GTTCTTCCEEECCSSCCC---CCG-GGTTCTT--CSEEECTTS-CCCCC-GG-GTT
T ss_pred CccEEEccCC-----ccc-cchh-hhcCCcCCEEEccCCccc---Cch-HHcCCCc--CCEEECcCC-cccCc-hh-hcc
Confidence 7888998753 222 3444 889999999999999753 343 5788888 999999999 77654 44 899
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEe
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 249 (463)
+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|++|+
T Consensus 131 l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~ 205 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFT 205 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEE
T ss_pred CCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceee
Confidence 9999999999997765555 48999999999999999985443 88999999999999999854 43 88999999999
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
+++|.+++..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 206 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred cccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 99999996544 88999999999999999854 43 89999999999999999774 468899999999999999986
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCC
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGL 401 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~ 401 (463)
. ..+..+++|++|++++|++++..|..+..+++|++|++++|++++..| +..++.+ +.|++++|++.
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM-DSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC-SEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc-ceeehhhhccc
Confidence 4 457889999999999999998899999999999999999999998877 7788999 99999999863
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.98 E-value=6.3e-32 Score=267.38 Aligned_cols=257 Identities=23% Similarity=0.255 Sum_probs=204.7
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|++++| .+.+..+..+.++++|++|++++|++++..|..+.++++|++|++++|++++..+..+.++++|++|+++
T Consensus 54 L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 888888888 6776656678888888888888888886667778888888888888888885555558888888888888
Q ss_pred cCcCCCCCc-hhhcCCCCcCEEeccCC-CCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCC
Q 044868 228 YNSLTGSIP-STIGQLGMLQKLDLSSN-SLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFI 305 (463)
Q Consensus 228 ~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 305 (463)
+|++++..+ ..+..+++|++|++++| .+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 888884333 36788888888888888 4665556778888888889998888888778888888889999998888855
Q ss_pred CCchhhhCCCCCCEEeccCCCCCCCCccccC---CCCcccEEEcccccCCC----CchhhhCCCCCCCeEEccCCCCCcc
Q 044868 306 PLPVEFGILVKLQELRLANSGYSGSIPPSFS---QLNNLSTLSLQNNRLTG----EIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 306 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
.....+..+++|++|++++|.+++..+..+. ..+.++.++++++.+.+ .+|..+..+++|++|++++|+++..
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 4444456688899999999988876554332 45778899999998876 4788899999999999999999954
Q ss_pred CCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 379 VPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 379 ~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
.+..+..++.+ ++|++++|++.|.|+.
T Consensus 293 ~~~~~~~l~~L-~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 293 PDGIFDRLTSL-QKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CTTTTTTCTTC-CEEECCSSCBCCCHHH
T ss_pred CHHHHhcCCCC-CEEEeeCCCccCcCCC
Confidence 44445788999 9999999999999973
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.8e-31 Score=269.24 Aligned_cols=236 Identities=22% Similarity=0.195 Sum_probs=153.8
Q ss_pred CCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEec
Q 044868 171 KFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDL 250 (463)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 250 (463)
++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555555555555444445555555555555555555444455555555555555555555444444555555555555
Q ss_pred cCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCC-chhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 251 SSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF-PKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 251 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
++|++++..+..+.++++|++|++++|...+.+ +..+.++++|++|++++|.+.+. | .+..+++|++|+|++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 555555444445555666666666653222222 23466666667777776666543 2 35667788888888888887
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCccccc
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAY 409 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~ 409 (463)
..|..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..++.+ +.|++++|||.|+|...|+
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~Np~~CdC~~~~l 311 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL-VELHLHHNPWNCDCDILWL 311 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC-CEEECCSSCEECSTTTHHH
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC-CEEEccCCCcCCCCCchHH
Confidence 777788888888888888888887777778888888888888888887777777777888 8888888888888887664
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=9.5e-31 Score=266.70 Aligned_cols=237 Identities=23% Similarity=0.205 Sum_probs=152.0
Q ss_pred CCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEec
Q 044868 171 KFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDL 250 (463)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 250 (463)
+++++|+|++|++++..+..|.++++|++|+|++|.+.+..+..|.++++|++|+|++|+++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34445555555554433444445555555555555554444444555555555555555555333334555555555555
Q ss_pred cCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCC-chhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 251 SSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF-PKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 251 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
++|++++..+..+.++++|++|++++|+..+.+ +..+.++++|++|++++|.+... | .+..+++|++|+|++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCc
Confidence 555555444445555555555555553322222 23456666666666666666533 3 35677788888888888887
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCccccc
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAY 409 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~ 409 (463)
..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..++.+ +.|++++|||.|+|...|+
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~Np~~CdC~l~~l 300 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL-ERIHLHHNPWNCNCDILWL 300 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC-CEEECCSSCEECSSTTHHH
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC-CEEEcCCCCccCCCCchHH
Confidence 777888888888888888888887777788888888888888888887777777778888 8899999999999887774
Q ss_pred c
Q 044868 410 S 410 (463)
Q Consensus 410 ~ 410 (463)
.
T Consensus 301 ~ 301 (440)
T 3zyj_A 301 S 301 (440)
T ss_dssp H
T ss_pred H
Confidence 3
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.5e-31 Score=279.89 Aligned_cols=284 Identities=23% Similarity=0.215 Sum_probs=211.1
Q ss_pred ccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCC
Q 044868 108 ATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQI 187 (463)
Q Consensus 108 g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 187 (463)
..+|+.+. ++|++|++++|.+ .+..|..+..+++ |++|++++| .+.+..|..|+++++|++|++++|++++..
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l--~~~~~~~~~~l~~--L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKI--TYIGHGDLRACAN--LQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCC--CEECSSTTSSCTT--CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred ccccccCC--CCccEEECcCCcc--CccChhhhhcCCc--ccEEECCCC-CcCccChhhccccccCCEEECCCCccCccC
Confidence 35777664 7999999999975 4556778899988 999999999 899888889999999999999999999777
Q ss_pred ccccCCCCCCcEEEcccCCCCC-CCchhcCCCCCCCEEEcccCcCCCCCc-hhhcCCCCcCEEeccCCCCCCCCchhhhc
Q 044868 188 PVKIFSLNSLVHLDLSYNLLAG-TIPVQVGNLRNLVGLDLSYNSLTGSIP-STIGQLGMLQKLDLSSNSLTGSIPDSIDK 265 (463)
Q Consensus 188 p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 265 (463)
|..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+..+++|++|++++|++++..|..+..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 7779999999999999999986 467789999999999999999555555 68999999999999999999877777655
Q ss_pred ------------------------CCCCCEEEeeCCCCCCCC--ch-----------------------------hhh--
Q 044868 266 ------------------------LSLLAFMALSNNKLTGNF--PK-----------------------------GLA-- 288 (463)
Q Consensus 266 ------------------------l~~L~~L~L~~n~l~~~~--p~-----------------------------~l~-- 288 (463)
+++|++|++++|.+++.. +. .+.
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 455666666666655420 00 000
Q ss_pred ---------------------------------------------------------CCCCCcEeecCCCCCCCCCchhh
Q 044868 289 ---------------------------------------------------------KLQSLQYFLMDDNPMFIPLPVEF 311 (463)
Q Consensus 289 ---------------------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l 311 (463)
...+|++|++++|.+. .+|..+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~ 329 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF 329 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHH
Confidence 0123333444444432 233333
Q ss_pred -hCCCCCCEEeccCCCCCCCCcc---ccCCCCcccEEEcccccCCCCch--hhhCCCCCCCeEEccCCCCCccCCCCchh
Q 044868 312 -GILVKLQELRLANSGYSGSIPP---SFSQLNNLSTLSLQNNRLTGEIP--VVFGSLSHIYHLNLSRNFLDGVVPFNSSF 385 (463)
Q Consensus 312 -~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 385 (463)
..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 408 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQW 408 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCC
T ss_pred HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcc
Confidence 4577788888888887765542 35677788888888888774332 45677778888888888877 45666666
Q ss_pred hhccCCeEeccCCCCC
Q 044868 386 LKRLGRNLDLSGNPGL 401 (463)
Q Consensus 386 l~~L~~~L~L~~N~~~ 401 (463)
++.+ ++|++++|.+.
T Consensus 409 ~~~L-~~L~Ls~N~l~ 423 (549)
T 2z81_A 409 PEKM-RFLNLSSTGIR 423 (549)
T ss_dssp CTTC-CEEECTTSCCS
T ss_pred cccc-cEEECCCCCcc
Confidence 6677 77777777653
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.3e-31 Score=259.69 Aligned_cols=226 Identities=25% Similarity=0.276 Sum_probs=170.7
Q ss_pred EEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCC--CCchhhcCCCCcCEEeccC
Q 044868 175 ILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTG--SIPSTIGQLGMLQKLDLSS 252 (463)
Q Consensus 175 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~ 252 (463)
.++.+++.++ .+|..+. ++|++|++++|+++...+..+.++++|++|++++|.++. ..+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555555555 4454332 456666666666663333335666666666666666652 2245555667777777777
Q ss_pred CCCCCCCchhhhcCCCCCEEEeeCCCCCCCCc-hhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC-C
Q 044868 253 NSLTGSIPDSIDKLSLLAFMALSNNKLTGNFP-KGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG-S 330 (463)
Q Consensus 253 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~ 330 (463)
|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 7766 455567777777777777777765443 467788888888888888888888888899999999999999987 5
Q ss_pred CccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 331 IPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 331 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..++.+ +.|++++|++....+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL-QVLDYSLNHIMTSKK 240 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC-CEEECTTSCCCBCSS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC-CEeECCCCCCcccCH
Confidence 78889999999999999999998888899999999999999999998877778888999 999999999765443
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=9.4e-31 Score=262.42 Aligned_cols=282 Identities=19% Similarity=0.151 Sum_probs=225.4
Q ss_pred CccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCC
Q 044868 105 KKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLN 184 (463)
Q Consensus 105 ~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~ 184 (463)
.+.+..+..+..+++|++|++++|.+ .+..|..++.+++ |++|++++| .+....+..++++++|++|++++|.++
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~--L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNAI--RYLPPHVFQNVPL--LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTT--CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccChhhccCCCCcCEEECCCCCC--CcCCHHHhcCCCC--CCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccC
Confidence 34444556889999999999999875 4445666888988 999999999 787544445799999999999999999
Q ss_pred CCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCC-------------------CCEEEcccCcCCCCCchhhcCCCCc
Q 044868 185 GQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRN-------------------LVGLDLSYNSLTGSIPSTIGQLGML 245 (463)
Q Consensus 185 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-------------------L~~L~L~~n~l~~~~p~~l~~l~~L 245 (463)
+..|..+.++++|++|++++|.+++.. +..+++ |++|++++|.+.. +|.. ..++|
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~-~~~~--~~~~L 228 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV-VRGP--VNVEL 228 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCE-EECC--CCSSC
T ss_pred ccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeee-cccc--ccccc
Confidence 777778999999999999999998643 233444 4555555555542 2322 34689
Q ss_pred CEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCC
Q 044868 246 QKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANS 325 (463)
Q Consensus 246 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 325 (463)
++|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+ ++..+..+++|++|++++|
T Consensus 229 ~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 229 TILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred cEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 9999999999964 578999999999999999998889999999999999999999976 4556678999999999999
Q ss_pred CCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 326 GYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 326 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
+++ .+|..+..+++|++|++++|++++. + +..+++|++|++++|++++... ...+..+ ....+.+++..|.++
T Consensus 306 ~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~--~~~~~~~-~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 306 HLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL--RALFRNV-ARPAVDDADQHCKID 378 (390)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH--HHHTTTC-CTTTBCCCCSCCCTT
T ss_pred cce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH--HHHHHHH-HhhcccccCceeccc
Confidence 998 6777788899999999999999844 3 6788999999999999987532 1223344 445567788888765
Q ss_pred cc
Q 044868 406 AE 407 (463)
Q Consensus 406 ~~ 407 (463)
..
T Consensus 379 ~~ 380 (390)
T 3o6n_A 379 YQ 380 (390)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.6e-29 Score=259.44 Aligned_cols=282 Identities=26% Similarity=0.341 Sum_probs=167.3
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
+++.|++++. .+.+ +++ +.++++|++|++++|.+ ..++. +.++++ |++|++++| .+.+. +. +.+
T Consensus 69 ~L~~L~Ls~n-----~l~~-~~~-~~~l~~L~~L~l~~n~l---~~~~~-~~~l~~--L~~L~L~~n-~l~~~-~~-~~~ 132 (466)
T 1o6v_A 69 NLTQINFSNN-----QLTD-ITP-LKNLTKLVDILMNNNQI---ADITP-LANLTN--LTGLTLFNN-QITDI-DP-LKN 132 (466)
T ss_dssp TCCEEECCSS-----CCCC-CGG-GTTCTTCCEEECCSSCC---CCCGG-GTTCTT--CCEEECCSS-CCCCC-GG-GTT
T ss_pred CCCEEECCCC-----ccCC-chh-hhccccCCEEECCCCcc---ccChh-hcCCCC--CCEEECCCC-CCCCC-hH-HcC
Confidence 6777777643 2332 333 77888888888888765 23333 777777 888888888 66654 33 788
Q ss_pred CCCCcEEEeecCCCCCCCcc--------------------ccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccC
Q 044868 170 LKFLQILTLSQNRLNGQIPV--------------------KIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYN 229 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~--------------------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 229 (463)
+++|++|++++|.+.+ ++. .+.++++|++|++++|.+.+. + .+..+++|++|++++|
T Consensus 133 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 133 LTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S-VLAKLTNLESLIATNN 209 (466)
T ss_dssp CTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSS
T ss_pred CCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCC
Confidence 8888888888888764 332 133344455555555554422 1 2445555555555555
Q ss_pred cCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCch
Q 044868 230 SLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPV 309 (463)
Q Consensus 230 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 309 (463)
.+.+..+ ++.+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 282 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-
T ss_pred ccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-
Confidence 5553332 44455555555555555532 235555666666666666654332 5566666666666666655433
Q ss_pred hhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhcc
Q 044868 310 EFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRL 389 (463)
Q Consensus 310 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 389 (463)
+..+++|++|++++|++++..+ +..+++|++|++++|++++..| +..+++|++|++++|++++. ..+..++.+
T Consensus 283 -~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L 355 (466)
T 1o6v_A 283 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNI 355 (466)
T ss_dssp -GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred -ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCC
Confidence 5566666666666666664332 5566666666666666665544 45666677777777766654 235556666
Q ss_pred CCeEeccCCCCCCCCc
Q 044868 390 GRNLDLSGNPGLCLNP 405 (463)
Q Consensus 390 ~~~L~L~~N~~~c~~~ 405 (463)
+.|++++|++....+
T Consensus 356 -~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 356 -NWLSAGHNQISDLTP 370 (466)
T ss_dssp -CEEECCSSCCCBCGG
T ss_pred -CEEeCCCCccCccch
Confidence 677777776654433
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.1e-30 Score=255.79 Aligned_cols=232 Identities=22% Similarity=0.258 Sum_probs=194.5
Q ss_pred CccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEc
Q 044868 147 SLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDL 226 (463)
Q Consensus 147 ~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 226 (463)
++++|++++| .+. .+|..++++++|++|+|++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++
T Consensus 82 ~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3778888877 565 66777777777888888877777 77777777777777777777777 66777777777777777
Q ss_pred ccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCC
Q 044868 227 SYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIP 306 (463)
Q Consensus 227 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 306 (463)
++|++.+.+|..+.. . ..+..+.++++|++|++++|.++ .+|..+.++++|++|++++|.+.+
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 777766666654432 1 11223567999999999999999 889999999999999999999986
Q ss_pred CchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhh
Q 044868 307 LPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFL 386 (463)
Q Consensus 307 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 386 (463)
+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCeEeccCCCC
Q 044868 387 KRLGRNLDLSGNPG 400 (463)
Q Consensus 387 ~~L~~~L~L~~N~~ 400 (463)
+.+ +.+++..|.+
T Consensus 301 ~~L-~~l~l~~~~~ 313 (328)
T 4fcg_A 301 PAN-CIILVPPHLQ 313 (328)
T ss_dssp CTT-CEEECCGGGS
T ss_pred cCc-eEEeCCHHHH
Confidence 999 8999887754
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.3e-30 Score=272.68 Aligned_cols=272 Identities=23% Similarity=0.169 Sum_probs=231.6
Q ss_pred CCCCCCEEEcccCCCCCccccccc-ccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCC
Q 044868 116 SLSYLQSVFFFSCFTHTKTTLSVS-ADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSL 194 (463)
Q Consensus 116 ~l~~L~~L~L~~~~~~~~~~ip~~-~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 194 (463)
.+++++.+++++|.+ +.+|.. +..+++ |++|+|++| .+.+..|..|+.+++|++|+|++|.+++..|..++++
T Consensus 49 ~l~~l~~l~l~~~~l---~~lp~~~~~~l~~--L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM---RKLPAALLDSFRQ--VELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEE---SEECTHHHHHCCC--CSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCceEEEeeCCCC---CCcCHHHHccCCC--CcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 478999999999864 556655 577888 999999999 8988888899999999999999999998878788999
Q ss_pred CCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEe
Q 044868 195 NSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMAL 274 (463)
Q Consensus 195 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 274 (463)
++|++|+|++|.+++..+..|.++++|++|++++|.+++..|..++.+++|++|++++|.+++.. +..+++|+.|++
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 99999999999999655566799999999999999999888889999999999999999998653 445566666666
Q ss_pred eCCCCCC------------------CCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccC
Q 044868 275 SNNKLTG------------------NFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFS 336 (463)
Q Consensus 275 ~~n~l~~------------------~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 336 (463)
++|.+++ .++.. ..++|+.|++++|.+.+. ..+..+++|++|+|++|.+++..|..+.
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred ccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 6665543 11111 125788999999988774 6788999999999999999999899999
Q ss_pred CCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCC
Q 044868 337 QLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCL 403 (463)
Q Consensus 337 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~ 403 (463)
.+++|++|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..++.| +.|++++|++...
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L-~~L~L~~N~l~~~ 339 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSIVTL 339 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCCCCC
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC-CEEECCCCCCCCc
Confidence 99999999999999995 6777788999999999999999 567778889999 9999999997644
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.4e-29 Score=259.90 Aligned_cols=262 Identities=27% Similarity=0.365 Sum_probs=150.0
Q ss_pred ccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCc--------------------hhcCCCCCC
Q 044868 114 IFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIP--------------------PQISSLKFL 173 (463)
Q Consensus 114 l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p--------------------~~l~~l~~L 173 (463)
+.++++|++|++++|.+. .++. +..+++ |++|++++| .+.+. + ..++++++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~---~~~~-~~~l~~--L~~L~l~~n-~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L 179 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQIT---DIDP-LKNLTN--LNRLELSSN-TISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTL 179 (466)
T ss_dssp GTTCTTCCEEECCSSCCC---CCGG-GTTCTT--CSEEEEEEE-EECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTC
T ss_pred hcCCCCCCEEECCCCCCC---CChH-HcCCCC--CCEEECCCC-ccCCC-hhhccCCcccEeecCCcccCchhhccCCCC
Confidence 556666666666665431 2222 555555 666666665 43321 1 124455556
Q ss_pred cEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCC
Q 044868 174 QILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSN 253 (463)
Q Consensus 174 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 253 (463)
++|++++|.+.+ ++ .+.++++|++|++++|.+.+..| ++.+++|++|++++|++++ + ..+..+++|++|++++|
T Consensus 180 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 180 ERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANN 253 (466)
T ss_dssp CEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred CEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCC
Confidence 666666666553 22 35556666666666666664433 4556666666666666653 2 24555666666666666
Q ss_pred CCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCcc
Q 044868 254 SLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPP 333 (463)
Q Consensus 254 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~ 333 (463)
.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|++++..|
T Consensus 254 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 254 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred ccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence 6664433 5566666666666666664322 5566666666666666655433 5556666666666666665443
Q ss_pred ccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCC
Q 044868 334 SFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 334 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c 402 (463)
+..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..++.+ +.|++++|++..
T Consensus 327 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 -VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI-TQLGLNDQAWTN 389 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC-CEEECCCEEEEC
T ss_pred -hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC-CEEeccCCcccC
Confidence 45566666666666666643 245566666666666666666555 4555666 666666666554
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=271.15 Aligned_cols=303 Identities=23% Similarity=0.250 Sum_probs=219.9
Q ss_pred ccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcC
Q 044868 89 LHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQIS 168 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~ 168 (463)
.+++.|++++. .+.+..+..+.++++|++|++++|.+ .+..+..+.++++ |++|++++| .+.+..|..|+
T Consensus 28 ~~l~~L~Ls~n-----~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~--L~~L~L~~n-~l~~~~~~~~~ 97 (570)
T 2z63_A 28 FSTKNLDLSFN-----PLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSH--LSTLILTGN-PIQSLALGAFS 97 (570)
T ss_dssp SSCCEEECCSC-----CCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTT--CCEEECTTC-CCCEECTTTTT
T ss_pred ccccEEEccCC-----ccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchh--CCEEeCcCC-cCCccCHhhhc
Confidence 47889999753 35566667899999999999999975 3444567888988 999999999 88888888999
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCC-CCchhcCCCCCCCEEEcccCcCCCCCchhhcCC-----
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAG-TIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQL----- 242 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l----- 242 (463)
++++|++|++++|++++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|++++..+..++.+
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999999999986555578999999999999999987 579999999999999999998765433333222
Q ss_pred --------------------------------------------------------------------------------
Q 044868 243 -------------------------------------------------------------------------------- 242 (463)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (463)
T Consensus 178 ~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l 257 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257 (570)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS
T ss_pred hhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc
Confidence
Q ss_pred ------------------------CCcCEEeccCCCCCCCCchhh-----------------------------------
Q 044868 243 ------------------------GMLQKLDLSSNSLTGSIPDSI----------------------------------- 263 (463)
Q Consensus 243 ------------------------~~L~~L~L~~n~l~~~~p~~l----------------------------------- 263 (463)
++|++|++++|.++ .+|..+
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCB
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCc
Confidence 23333333333322 111111
Q ss_pred -------hcCCCCCEEEeeCCCCCCCC--chhhhC-----------------------CCCCcEeecCCCCCCCCCc-hh
Q 044868 264 -------DKLSLLAFMALSNNKLTGNF--PKGLAK-----------------------LQSLQYFLMDDNPMFIPLP-VE 310 (463)
Q Consensus 264 -------~~l~~L~~L~L~~n~l~~~~--p~~l~~-----------------------l~~L~~L~L~~n~l~~~~~-~~ 310 (463)
..+++|++|++++|.+++.. +..+.. +++|++|++++|.+.+..+ ..
T Consensus 337 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp SCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 12334444444444443221 333444 4445555555555544444 35
Q ss_pred hhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCC-CCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhcc
Q 044868 311 FGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLT-GEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRL 389 (463)
Q Consensus 311 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 389 (463)
+..+++|++|++++|.+.+..|..+..+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+..++.|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 667778888888888887777777888888888888888887 5678888888888888888888888888888888888
Q ss_pred CCeEeccCCCCCCC
Q 044868 390 GRNLDLSGNPGLCL 403 (463)
Q Consensus 390 ~~~L~L~~N~~~c~ 403 (463)
++|++++|.+...
T Consensus 497 -~~L~l~~n~l~~~ 509 (570)
T 2z63_A 497 -QVLNMASNQLKSV 509 (570)
T ss_dssp -CEEECCSSCCSCC
T ss_pred -CEEeCCCCcCCCC
Confidence 8888888876544
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.4e-31 Score=260.67 Aligned_cols=263 Identities=20% Similarity=0.187 Sum_probs=221.1
Q ss_pred cccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCc
Q 044868 109 TFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIP 188 (463)
Q Consensus 109 ~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 188 (463)
.+|..+. ++|++|++++|.+ .+..+..+..+++ |++|++++| .+.+..|..|+++++|++|++++|++++..+
T Consensus 45 ~iP~~~~--~~L~~L~l~~n~i--~~~~~~~~~~l~~--L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 45 SIPSGLT--EAVKSLDLSNNRI--TYISNSDLQRCVN--LQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp SCCTTCC--TTCCEEECTTSCC--CEECTTTTTTCTT--CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred ccccccc--ccCcEEECCCCcC--cccCHHHhccCCC--CCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence 4555544 5899999999875 2333347888888 999999999 8988888889999999999999999995444
Q ss_pred cccCCCCCCcEEEcccCCCCCCCch--hcCCCCCCCEEEcccCc-CCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhc
Q 044868 189 VKIFSLNSLVHLDLSYNLLAGTIPV--QVGNLRNLVGLDLSYNS-LTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDK 265 (463)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 265 (463)
..+.++++|++|++++|++++ +|. .+..+++|++|++++|. +.+..+..+..+++|++|++++|++++..|..+..
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred hHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 458899999999999999984 554 78999999999999994 66556778999999999999999999888999999
Q ss_pred CCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhh---CCCCCCEEeccCCCCCC----CCccccCCC
Q 044868 266 LSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFG---ILVKLQELRLANSGYSG----SIPPSFSQL 338 (463)
Q Consensus 266 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~----~~p~~l~~l 338 (463)
+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+. ....++.++++++.+++ .+|..+..+
T Consensus 197 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 99999999999999743333455689999999999999887655443 46778999999999886 467788899
Q ss_pred CcccEEEcccccCCCCchhh-hCCCCCCCeEEccCCCCCccCC
Q 044868 339 NNLSTLSLQNNRLTGEIPVV-FGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 339 ~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p 380 (463)
++|++|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 277 ~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 277 SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999999999999 56665 5899999999999999998765
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=5.6e-30 Score=245.66 Aligned_cols=234 Identities=24% Similarity=0.217 Sum_probs=149.1
Q ss_pred CCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCc-CCCCCchhhcCCCCcCEEe
Q 044868 171 KFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNS-LTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ 249 (463)
++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 466666666666664444456666666666666666665556666666666666666665 5544455666666666666
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
+++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666666556666666667777777666665555556666667777777776665555556666777777777777776
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+.. .....+ +.+..+.+.+.|..|.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l-~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWL-QKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHH-HHCCSEECCCBEEESG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHH-HhcccccCccccCCch
Confidence 66667777777777777777777655566677777777777777766544321 122333 4445556666665554
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=258.57 Aligned_cols=226 Identities=24% Similarity=0.248 Sum_probs=121.4
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
+++|+|++| .+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 66 l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 66 TRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp CSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 445555555 4444444455555555555555555554444455555555555555555554333445555555555555
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCc-hhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIP-DSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIP 306 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 306 (463)
+|+++...+..+..+++|++|++++|+..+.++ ..+.++++|++|++++|.++ .+| .+..+++|++|+|++|.+.+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 555554444445555555555555532222222 24555555555555555555 333 255555566666666655555
Q ss_pred CchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC
Q 044868 307 LPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 307 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 376 (463)
.|..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|.+.
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5555555566666666666665555555555566666666666665444445555566666666666554
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=4.5e-30 Score=246.31 Aligned_cols=232 Identities=27% Similarity=0.278 Sum_probs=211.6
Q ss_pred cEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCC
Q 044868 174 QILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSN 253 (463)
Q Consensus 174 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 253 (463)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888887 667654 469999999999999777788999999999999999999877889999999999999999
Q ss_pred C-CCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCc
Q 044868 254 S-LTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332 (463)
Q Consensus 254 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 332 (463)
. +++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..++.+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 877668889999999999999999998888889999999999999999998888889999999999999999997777
Q ss_pred cccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCccccc
Q 044868 333 PSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAY 409 (463)
Q Consensus 333 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~ 409 (463)
..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..++.+ +.|++++|++.|+|...++
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~~~~~~~ 246 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL-QYLRLNDNPWVCDCRARPL 246 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC-CEEECCSSCEECSGGGHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc-CEEeccCCCccCCCCcHHH
Confidence 789999999999999999998889999999999999999999998776667788899 9999999999999988663
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=1.6e-31 Score=260.08 Aligned_cols=242 Identities=25% Similarity=0.304 Sum_probs=130.5
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCC-CCCCccccC-------CCCCCcEEEcccCCCCCCCchhc--CC
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRL-NGQIPVKIF-------SLNSLVHLDLSYNLLAGTIPVQV--GN 217 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l--~~ 217 (463)
|++|++++| .+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|++++.+|..+ ..
T Consensus 45 L~~l~l~~n-~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 45 LEYLLKRVD-TE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp CTTHHHHCC-TT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred ceeEeeccc-cc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 555555555 44 444444322 55555555555 233444333 45555555555555555555544 55
Q ss_pred CCCCCEEEcccCcCCCCCchhhcCC-----CCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCC--Cchhh--h
Q 044868 218 LRNLVGLDLSYNSLTGSIPSTIGQL-----GMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN--FPKGL--A 288 (463)
Q Consensus 218 l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l--~ 288 (463)
+++|++|++++|++++. |..++.+ ++|++|++++|++++..|..++++++|++|++++|++.+. .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 55555555555555544 4444444 5566666666665555555555566666666666655443 22233 5
Q ss_pred CCCCCcEeecCCCCCCCC--Cc-hhhhCCCCCCEEeccCCCCCCCCc-cccCCCCcccEEEcccccCCCCchhhhCCCCC
Q 044868 289 KLQSLQYFLMDDNPMFIP--LP-VEFGILVKLQELRLANSGYSGSIP-PSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSH 364 (463)
Q Consensus 289 ~l~~L~~L~L~~n~l~~~--~~-~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 364 (463)
.+++|++|++++|.+.+. ++ ..+..+++|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 556666666666655421 11 223455666666666666665543 33444566666666666666 5555444 56
Q ss_pred CCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCC
Q 044868 365 IYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGL 401 (463)
Q Consensus 365 L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~ 401 (463)
|++|++++|++++. |. +..++.+ ++|++++|++.
T Consensus 276 L~~L~Ls~N~l~~~-p~-~~~l~~L-~~L~L~~N~l~ 309 (312)
T 1wwl_A 276 LSVLDLSYNRLDRN-PS-PDELPQV-GNLSLKGNPFL 309 (312)
T ss_dssp EEEEECCSSCCCSC-CC-TTTSCEE-EEEECTTCTTT
T ss_pred ceEEECCCCCCCCC-hh-HhhCCCC-CEEeccCCCCC
Confidence 66666666666654 33 5555666 66666666653
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=1.7e-29 Score=258.41 Aligned_cols=228 Identities=24% Similarity=0.215 Sum_probs=153.1
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|+|++| .+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 77 l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 77 TRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp CSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred ccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 666666666 5666666666667777777777777665555666667777777777777665555556667777777777
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCc-hhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIP-DSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIP 306 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 306 (463)
+|+++...+..+..+++|++|++++|+..+.++ ..+.++++|++|++++|.+++ +| .+..+++|++|+|++|.+.+.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCccc
Confidence 777665445566667777777776643333333 346667777777777777763 33 366677777777777777777
Q ss_pred CchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 307 LPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 307 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
.|..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 777777777777777777777766666777777777777777777755556666777777777777776543
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=8.6e-29 Score=253.15 Aligned_cols=276 Identities=21% Similarity=0.164 Sum_probs=227.2
Q ss_pred ccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcC
Q 044868 89 LHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQIS 168 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~ 168 (463)
.+++.|++++. .+.+ +| .+..+++|++|++++|.+. .+| ++.+++ |++|++++| .+.+. + ++
T Consensus 42 ~~L~~L~Ls~n-----~l~~-~~-~l~~l~~L~~L~Ls~n~l~---~~~--~~~l~~--L~~L~Ls~N-~l~~~-~--~~ 103 (457)
T 3bz5_A 42 ATLTSLDCHNS-----SITD-MT-GIEKLTGLTKLICTSNNIT---TLD--LSQNTN--LTYLACDSN-KLTNL-D--VT 103 (457)
T ss_dssp TTCCEEECCSS-----CCCC-CT-TGGGCTTCSEEECCSSCCS---CCC--CTTCTT--CSEEECCSS-CCSCC-C--CT
T ss_pred CCCCEEEccCC-----Cccc-Ch-hhcccCCCCEEEccCCcCC---eEc--cccCCC--CCEEECcCC-CCcee-e--cC
Confidence 37899999753 3443 34 6889999999999999763 244 778887 999999999 78774 3 89
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEE
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKL 248 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 248 (463)
++++|++|++++|++++ +| ++++++|++|++++|++++. + ++.+++|++|++++|+..+.+ .+..+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 99999999999999986 54 88999999999999999964 3 789999999999999766566 47889999999
Q ss_pred eccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCC
Q 044868 249 DLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 249 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 328 (463)
++++|++++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|.+.+ +| +..+++|++|++++|+++
T Consensus 176 ~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 999999996 45 78899999999999999964 38899999999999999988 55 788999999999999999
Q ss_pred CCCccccCCCC-------cccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCC--------chhhhccCCeE
Q 044868 329 GSIPPSFSQLN-------NLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFN--------SSFLKRLGRNL 393 (463)
Q Consensus 329 ~~~p~~l~~l~-------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--------~~~l~~L~~~L 393 (463)
+..+..+..++ +|+.|++++|++.+.+| ++.+++|+.|++++|...+.+|.. +..++.+ +.|
T Consensus 247 ~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L-~~L 323 (457)
T 3bz5_A 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL-VYL 323 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC-CEE
T ss_pred CcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC-CEE
Confidence 87655555544 56677777777777777 467899999999999987776642 4455677 788
Q ss_pred eccCCCCCC
Q 044868 394 DLSGNPGLC 402 (463)
Q Consensus 394 ~L~~N~~~c 402 (463)
++++|.+..
T Consensus 324 ~L~~N~l~~ 332 (457)
T 3bz5_A 324 YLNNTELTE 332 (457)
T ss_dssp ECTTCCCSC
T ss_pred ECCCCcccc
Confidence 888888655
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.3e-28 Score=251.72 Aligned_cols=275 Identities=21% Similarity=0.212 Sum_probs=230.4
Q ss_pred ccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcC
Q 044868 89 LHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQIS 168 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~ 168 (463)
.+++.|++++. .+.+ +| ++++++|++|++++|.+.. ++ ++.+++ |++|++++| .+.+ +| ++
T Consensus 64 ~~L~~L~Ls~n-----~l~~-~~--~~~l~~L~~L~Ls~N~l~~---~~--~~~l~~--L~~L~L~~N-~l~~-l~--~~ 124 (457)
T 3bz5_A 64 TGLTKLICTSN-----NITT-LD--LSQNTNLTYLACDSNKLTN---LD--VTPLTK--LTYLNCDTN-KLTK-LD--VS 124 (457)
T ss_dssp TTCSEEECCSS-----CCSC-CC--CTTCTTCSEEECCSSCCSC---CC--CTTCTT--CCEEECCSS-CCSC-CC--CT
T ss_pred CCCCEEEccCC-----cCCe-Ec--cccCCCCCEEECcCCCCce---ee--cCCCCc--CCEEECCCC-cCCe-ec--CC
Confidence 47889999754 3344 33 8899999999999998632 33 778887 999999999 8877 44 89
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEE
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKL 248 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 248 (463)
++++|++|++++|++++ ++ ++++++|++|++++|...+.+ .+..+++|++|++++|++++ +| ++.+++|++|
T Consensus 125 ~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L 196 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRL 196 (457)
T ss_dssp TCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEE
T ss_pred CCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEE
Confidence 99999999999999996 43 889999999999999766666 47899999999999999996 55 7889999999
Q ss_pred eccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCC-------CCCEEe
Q 044868 249 DLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILV-------KLQELR 321 (463)
Q Consensus 249 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-------~L~~L~ 321 (463)
++++|++++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+.+..+..+..++ +|+.|+
T Consensus 197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEID 270 (457)
T ss_dssp ECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred ECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEE
Confidence 9999999975 38899999999999999997 66 88999999999999999987665555544 566777
Q ss_pred ccCCCCCCCCccccCCCCcccEEEcccccCCCCchhh--------hCCCCCCCeEEccCCCCCccCCCCchhhhccCCeE
Q 044868 322 LANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVV--------FGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNL 393 (463)
Q Consensus 322 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~--------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L 393 (463)
+++|.+.+.+| ++.+++|+.|++++|...+.+|.. +..+++|++|++++|++++. + +..++.| +.|
T Consensus 271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L-~~L 344 (457)
T 3bz5_A 271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKL-KSL 344 (457)
T ss_dssp CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTC-SEE
T ss_pred CCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcC-cEE
Confidence 77777766666 467899999999999987777642 45668999999999999984 3 7788999 999
Q ss_pred eccCCCCCC
Q 044868 394 DLSGNPGLC 402 (463)
Q Consensus 394 ~L~~N~~~c 402 (463)
++++|++..
T Consensus 345 ~l~~N~l~~ 353 (457)
T 3bz5_A 345 SCVNAHIQD 353 (457)
T ss_dssp ECCSSCCCB
T ss_pred ECCCCCCCC
Confidence 999999764
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=4.1e-31 Score=257.12 Aligned_cols=251 Identities=22% Similarity=0.182 Sum_probs=215.2
Q ss_pred cccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCC-CCCCchhcC-------CCCCCcEEEeecCCCC
Q 044868 113 QIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPAL-VGPIPPQIS-------SLKFLQILTLSQNRLN 184 (463)
Q Consensus 113 ~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~ 184 (463)
.++..++|++|++++|.+ .+|..+... |++|++++| .+ .+.+|..+. ++++|++|++++|+++
T Consensus 38 ~~~~~~~L~~l~l~~n~l----~~p~~~~~~----L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE----ADLGQFTDI----IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEEEECTTHHHHCCTT----CCCHHHHHH----HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred EEccCCCceeEeeccccc----ccHHHHHHH----Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 345678899999999875 667655543 889999999 67 556777766 7999999999999999
Q ss_pred CCCcccc--CCCCCCcEEEcccCCCCCCCchhcCCC-----CCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCC
Q 044868 185 GQIPVKI--FSLNSLVHLDLSYNLLAGTIPVQVGNL-----RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTG 257 (463)
Q Consensus 185 ~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 257 (463)
+.+|..+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..++.+++|++|++++|++.+
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred chhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 9999886 8899999999999999976 8777776 999999999999998888999999999999999999886
Q ss_pred C--Cchhh--hcCCCCCEEEeeCCCCCC--CCc-hhhhCCCCCcEeecCCCCCCCCCc-hhhhCCCCCCEEeccCCCCCC
Q 044868 258 S--IPDSI--DKLSLLAFMALSNNKLTG--NFP-KGLAKLQSLQYFLMDDNPMFIPLP-VEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 258 ~--~p~~l--~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 329 (463)
. .+..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..| ..+..+++|++|+|++|+++
T Consensus 188 ~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 5 34444 889999999999999983 222 334688999999999999998875 45667899999999999999
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
.+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++++.
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 7788776 8999999999999965 66 88999999999999999864
No 58
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.6e-28 Score=260.68 Aligned_cols=289 Identities=24% Similarity=0.233 Sum_probs=218.8
Q ss_pred cccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCc
Q 044868 109 TFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIP 188 (463)
Q Consensus 109 ~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 188 (463)
.+|+.+- +++++|||++|.+ .+..+..+.++++ |++|+|++| .+.+..|..|.++++|++|+|++|++++..+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i--~~l~~~~f~~l~~--L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPL--RHLGSYSFFSFPE--LQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCC--CEECTTTTTTCTT--CCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred ccCCCCC--cCCCEEEeeCCCC--CCCCHHHHhCCCC--CCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 5665542 4789999999976 3334467899998 999999999 8888778889999999999999999996666
Q ss_pred cccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCC-CCchhhcCCCCcCEEeccCCCCCCCCchhhhcC-
Q 044868 189 VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTG-SIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKL- 266 (463)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l- 266 (463)
..|.++++|++|++++|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++++|++++..+..+..+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 678999999999999999997766789999999999999999975 467888999999999999998875444332211
Q ss_pred --------------------------------------------------------------------------------
Q 044868 267 -------------------------------------------------------------------------------- 266 (463)
Q Consensus 267 -------------------------------------------------------------------------------- 266 (463)
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------CCCCEEEeeCCCCCCCCc------------
Q 044868 267 --------------------------------------------------SLLAFMALSNNKLTGNFP------------ 284 (463)
Q Consensus 267 --------------------------------------------------~~L~~L~L~~n~l~~~~p------------ 284 (463)
..|+.|++.+|.+.+..+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 123344444433221100
Q ss_pred -------hhhhCCCCCcEeecCCCCC------------------------------------------------------
Q 044868 285 -------KGLAKLQSLQYFLMDDNPM------------------------------------------------------ 303 (463)
Q Consensus 285 -------~~l~~l~~L~~L~L~~n~l------------------------------------------------------ 303 (463)
.....+++|+.|++++|.+
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 0011233444444444432
Q ss_pred --------------------CCCCchhhhCCCCCCEEeccCCCCC-CCCccccCCCCcccEEEcccccCCCCchhhhCCC
Q 044868 304 --------------------FIPLPVEFGILVKLQELRLANSGYS-GSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSL 362 (463)
Q Consensus 304 --------------------~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l 362 (463)
.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 2233334455667777888877643 3467788889999999999999998888999999
Q ss_pred CCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 363 SHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 363 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
++|++|+|++|+|++..|..+..+++| ++|++++|.+....+
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L-~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSL-QVLDYSLNHIMTSKK 559 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTC-CEEECTTSCCCBCCS
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCC-CEEECCCCcCCCCCH
Confidence 999999999999999888888888999 999999998765443
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.8e-29 Score=245.99 Aligned_cols=233 Identities=21% Similarity=0.202 Sum_probs=138.8
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|++++| .+.+..|..+.++++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|++|+++
T Consensus 36 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 36 VKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (317)
T ss_dssp CSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEECC
Confidence 666666666 6666666666666666666666666654332 6666666666666666652 22 22566666666
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhh-hCCCCCcEeecCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGL-AKLQSLQYFLMDDNPMFIP 306 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~ 306 (463)
+|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+.
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 6666643332 24566666666666665555556666666666666666665444444 3556666666666666544
Q ss_pred CchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC-ccCCCCchh
Q 044868 307 LPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD-GVVPFNSSF 385 (463)
Q Consensus 307 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~ 385 (463)
+ ....+++|++|++++|++++. |..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+++ +.+|..+..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred -c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 2 122356666666666666633 333556666666666666666 45555666666666666666666 444444555
Q ss_pred hhccCCeEecc
Q 044868 386 LKRLGRNLDLS 396 (463)
Q Consensus 386 l~~L~~~L~L~ 396 (463)
++.+ +.++++
T Consensus 261 ~~~L-~~l~l~ 270 (317)
T 3o53_A 261 NQRV-QTVAKQ 270 (317)
T ss_dssp CHHH-HHHHHH
T ss_pred cccc-eEEECC
Confidence 5555 555555
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-29 Score=259.28 Aligned_cols=244 Identities=21% Similarity=0.197 Sum_probs=192.6
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|+|++| .+.+..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.+++. | ..++|++|+++
T Consensus 36 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 36 VKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp CCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred ccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 888888888 7888777888888888888888888876554 78888888888888888743 3 23788888888
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhh-CCCCCcEeecCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLA-KLQSLQYFLMDDNPMFIP 306 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~ 306 (463)
+|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8888865543 457888888888888887787888888888888888888887777775 788888888888888766
Q ss_pred CchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC-ccCCCCchh
Q 044868 307 LPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD-GVVPFNSSF 385 (463)
Q Consensus 307 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~ 385 (463)
.+ ...+++|++|+|++|.+++..| .+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 32 3357888999999998886444 4778888999999999888 47777888888999999999888 555555556
Q ss_pred hhccCCeEecc-------CCCCCCCCccc
Q 044868 386 LKRLGRNLDLS-------GNPGLCLNPAE 407 (463)
Q Consensus 386 l~~L~~~L~L~-------~N~~~c~~~~~ 407 (463)
++.+ +.+++. .|+..|.++..
T Consensus 261 l~~L-~~l~~~~~~~~~~~~~~~c~~~~~ 288 (487)
T 3oja_A 261 NQRV-QTVAKQTVKKLTGQNEEECTVPTL 288 (487)
T ss_dssp CHHH-HHHHHHHHHHHTSSSSCCCSSTTC
T ss_pred CCCC-cEEeccccccccCCCcccccCCcc
Confidence 6666 667775 78888887654
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=9.3e-28 Score=229.06 Aligned_cols=211 Identities=24% Similarity=0.181 Sum_probs=120.0
Q ss_pred CCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEec
Q 044868 171 KFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDL 250 (463)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 250 (463)
++|++|++++|++++..+..+.++++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34666666666665444445555666666666666655444445555555555555555555444445555555555555
Q ss_pred cCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCC
Q 044868 251 SSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGS 330 (463)
Q Consensus 251 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 330 (463)
++|++++..+..+.++++|++|++++|.+++. .+|..+..+++|++|++++|++++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSF-----------------------KLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCcccee-----------------------cCchhhccCCCCCEEECCCCCCCcC
Confidence 55555544333444455555555555544431 1344455555555555555555544
Q ss_pred CccccCCCCccc----EEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 331 IPPSFSQLNNLS----TLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 331 ~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
.+..+..+++|+ +|++++|++++..+.. ....+|++|++++|++++..+..+..++.+ +.|++++|++.|+|+.
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTS-SCSCCEEEEECCSSCCSCCCTTTTTTCCSC-CEEECCSSCBCCCTTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccc-cCCCcccEEECCCCceeecCHhHhcccccc-cEEEccCCcccccCCc
Confidence 444444333343 6777777776433333 333467777777777776666556667777 7888888888888863
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2e-29 Score=245.68 Aligned_cols=245 Identities=21% Similarity=0.147 Sum_probs=154.4
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
++.++++.+ .+.......+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTT-THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeecccc-chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 455555555 4433333344556677777777777776555666777777777777777764443 6667777777777
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL 307 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 307 (463)
+|++++. + ..++|++|++++|++++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 7766632 2 236677777777777654333 2556777777777777655556666777777777777776665
Q ss_pred chhh-hCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhh
Q 044868 308 PVEF-GILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFL 386 (463)
Q Consensus 308 ~~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 386 (463)
+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|++++ +|..+..+++|++|++++|++++ +|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcC
Confidence 5554 3566777777777777643 22 2246677777777777763 44446666777777777777763 45555666
Q ss_pred hccCCeEeccCCCCCCCCcccc
Q 044868 387 KRLGRNLDLSGNPGLCLNPAEA 408 (463)
Q Consensus 387 ~~L~~~L~L~~N~~~c~~~~~~ 408 (463)
+.+ +.|++++|++.|++...+
T Consensus 237 ~~L-~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 237 QNL-EHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp TTC-CEEECTTCCCBHHHHHHH
T ss_pred CCC-CEEEccCCCccCcCHHHH
Confidence 666 677777777776655444
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.1e-26 Score=237.23 Aligned_cols=271 Identities=25% Similarity=0.310 Sum_probs=119.9
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
+++.++++.. .+.+ +|.. +++|++|++++|.+.....+| + +|++|++++| .+.+ +| .+++
T Consensus 92 ~L~~L~l~~n-----~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~------~--~L~~L~L~~n-~l~~-lp-~~~~ 151 (454)
T 1jl5_A 92 HLESLVASCN-----SLTE-LPEL---PQSLKSLLVDNNNLKALSDLP------P--LLEYLGVSNN-QLEK-LP-ELQN 151 (454)
T ss_dssp TCSEEECCSS-----CCSS-CCCC---CTTCCEEECCSSCCSCCCSCC------T--TCCEEECCSS-CCSS-CC-CCTT
T ss_pred CCCEEEccCC-----cCCc-cccc---cCCCcEEECCCCccCcccCCC------C--CCCEEECcCC-CCCC-Cc-ccCC
Confidence 5666666532 2233 4432 255666666655442111111 2 2666666666 5554 45 3666
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEe
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 249 (463)
+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|++++ +|.. .++|++|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 6666666666666553 44322 355555555555553 34 35555555555555555543 2221 12444445
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhh-----------------hCCCCCcEeecCCCCCCC--CCchh
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGL-----------------AKLQSLQYFLMDDNPMFI--PLPVE 310 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-----------------~~l~~L~~L~L~~n~l~~--~~~~~ 310 (463)
+++|.++ .+|. +..+++|++|++++|++++ +|..+ ...++|++|++++|.+.+ .+|..
T Consensus 222 l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~ 298 (454)
T 1jl5_A 222 AGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 298 (454)
T ss_dssp CCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTT
T ss_pred CcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCc
Confidence 5444444 3332 4444444444444444442 22111 012344555555554443 12211
Q ss_pred h-------------hCC-CCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC
Q 044868 311 F-------------GIL-VKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 311 l-------------~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 376 (463)
+ ..+ ++|++|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|+++
T Consensus 299 L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR 370 (454)
T ss_dssp CCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS
T ss_pred CCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCC
Confidence 1 011 245555555555543 3332 345555555555555 3443 2455666666666666
Q ss_pred c--cCCCCchhh-------------hccCCeEeccCCCCCC
Q 044868 377 G--VVPFNSSFL-------------KRLGRNLDLSGNPGLC 402 (463)
Q Consensus 377 ~--~~p~~~~~l-------------~~L~~~L~L~~N~~~c 402 (463)
+ .+|..+..+ +.+ +.|++++|++..
T Consensus 371 ~l~~ip~~l~~L~~n~~~~~i~~~~~~L-~~L~ls~N~l~~ 410 (454)
T 1jl5_A 371 EFPDIPESVEDLRMNSHLAEVPELPQNL-KQLHVETNPLRE 410 (454)
T ss_dssp SCCCCCTTCCEEECCC-------------------------
T ss_pred cCCCChHHHHhhhhcccccccccccCcC-CEEECCCCcCCc
Confidence 5 455554444 445 566666665543
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.9e-28 Score=252.65 Aligned_cols=226 Identities=23% Similarity=0.163 Sum_probs=198.4
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEE
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKL 248 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 248 (463)
.+++|++|+|++|.+++..|..+.++++|++|+|++|.+++..| +..+++|++|++++|.+++. + ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEE
Confidence 34489999999999998888899999999999999999987665 89999999999999999843 3 23899999
Q ss_pred eccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhh-CCCCCCEEeccCCCC
Q 044868 249 DLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFG-ILVKLQELRLANSGY 327 (463)
Q Consensus 249 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l 327 (463)
++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+.+..|..+. .+++|++|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999976554 468899999999999988888999999999999999999998888876 799999999999999
Q ss_pred CCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCccc
Q 044868 328 SGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAE 407 (463)
Q Consensus 328 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~ 407 (463)
++. |. ...+++|++|+|++|++++ +|..+..+++|+.|++++|.+++ +|..+..++.+ +.+++++|++.|++.+.
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L-~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 182 YDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNL-EHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTC-CEEECTTCCBCHHHHHH
T ss_pred ccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCC-CEEEcCCCCCcCcchHH
Confidence 966 32 3468999999999999996 44558899999999999999996 56667788899 99999999999987765
Q ss_pred cc
Q 044868 408 AY 409 (463)
Q Consensus 408 ~~ 409 (463)
++
T Consensus 257 ~~ 258 (487)
T 3oja_A 257 FF 258 (487)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.7e-27 Score=243.28 Aligned_cols=252 Identities=21% Similarity=0.247 Sum_probs=126.2
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCC-----------CCccEEEccCCCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYN-----------SSLQQLSLRSNPA 158 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~-----------~~L~~L~Ls~n~~ 158 (463)
+++++++++. .+ |.+|++++++++|++|++++|.. .+.+|..++++++ .++++|++++| .
T Consensus 12 ~L~~L~l~~n-----~l-~~iP~~i~~L~~L~~L~l~~n~~--~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~ 82 (454)
T 1jl5_A 12 FLQEPLRHSS-----NL-TEMPVEAENVKSKTEYYNAWSEW--ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-G 82 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHH--HHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-C
T ss_pred cchhhhcccC-----ch-hhCChhHhcccchhhhhccCCcc--cccCCcccccchhcchhhhhhhhccCCCEEEecCC-c
Confidence 5666777532 23 67777777777777777777654 4566666655443 01255555555 4
Q ss_pred CCCCCchhcCCCCCCcEEEeecCCCCCCCcccc----------------CC-CCCCcEEEcccCCCCCCCchhcCCCCCC
Q 044868 159 LVGPIPPQISSLKFLQILTLSQNRLNGQIPVKI----------------FS-LNSLVHLDLSYNLLAGTIPVQVGNLRNL 221 (463)
Q Consensus 159 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----------------~~-l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 221 (463)
+.+ +|.. .++|++|++++|.+++ +|..+ .. .++|++|++++|++++ +| .++++++|
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 433 2221 2344444444444443 33211 01 1456666666666653 44 35666666
Q ss_pred CEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCC
Q 044868 222 VGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDN 301 (463)
Q Consensus 222 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 301 (463)
++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 156 ~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN 225 (454)
T ss_dssp CEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred CEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence 666666666553 34322 356666666666654 34 35666666666666666653 3322 135666666666
Q ss_pred CCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCc
Q 044868 302 PMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDG 377 (463)
Q Consensus 302 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 377 (463)
.+. .+| .++.+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++
T Consensus 226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 226 ILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred cCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 665 444 26666667777777776663 3332 2566677777776664 4432 2567777777777776
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=6.7e-27 Score=224.91 Aligned_cols=211 Identities=25% Similarity=0.203 Sum_probs=133.7
Q ss_pred cCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 167 ISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 167 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++ ++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--------
Confidence 445556666666666655 4444432 455555555555554444555555555555555555542 1211
Q ss_pred EEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCC
Q 044868 247 KLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSG 326 (463)
Q Consensus 247 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 326 (463)
..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|+|++|+
T Consensus 74 -----------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 74 -----------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp -----------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred -----------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 34455555555555554 444555556666666666666665555666667777777777777
Q ss_pred CCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcc
Q 044868 327 YSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 327 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~ 406 (463)
+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|..+.....+ +.+++++|||.|+|..
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L-~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL-PFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC-SEEECCSCCBCCSGGG
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccC-CeEEeCCCCccCcCcc
Confidence 77655566677778888888888887555555677788888888888887 556666666777 8888999999888876
Q ss_pred ccc
Q 044868 407 EAY 409 (463)
Q Consensus 407 ~~~ 409 (463)
.++
T Consensus 214 ~~l 216 (290)
T 1p9a_G 214 LYF 216 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=2.5e-26 Score=218.62 Aligned_cols=205 Identities=27% Similarity=0.248 Sum_probs=131.4
Q ss_pred CcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccC
Q 044868 173 LQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSS 252 (463)
Q Consensus 173 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 252 (463)
.+++++++++++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 456666666666 4554432 4566666666666544444555555555555555555533333334444555555544
Q ss_pred CCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCc
Q 044868 253 NSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIP 332 (463)
Q Consensus 253 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p 332 (463)
|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 95 ------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 95 ------------------------NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp ------------------------SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ------------------------CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 44443333444555555666666666655555556666777777777777775555
Q ss_pred cccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 333 PSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 333 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..++.+ +.|++++|||.|+|.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL-KMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCSSS
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC-CEEEecCCCeeCCCc
Confidence 567777888888888888876666667778888888888888887666667777888 889999999999886
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2e-26 Score=219.78 Aligned_cols=221 Identities=23% Similarity=0.238 Sum_probs=176.9
Q ss_pred ccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCch
Q 044868 134 TTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPV 213 (463)
Q Consensus 134 ~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 213 (463)
..+|..+. + +|++|++++| .+.+..+..+.++++|++|++++|++++..+..+.++++|++|++++|.+++..+.
T Consensus 20 ~~ip~~l~--~--~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 20 YKIPDNLP--F--STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp SSCCSSSC--T--TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred cccCCCCC--C--CccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh
Confidence 45665543 2 4999999999 88887777899999999999999999966666889999999999999999988778
Q ss_pred hcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCC-CchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCC
Q 044868 214 QVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGS-IPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQS 292 (463)
Q Consensus 214 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 292 (463)
.+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+.++++|++|++++|++++..+..+..+++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 174 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence 899999999999999999977666799999999999999999874 6888999999999999999988766666655554
Q ss_pred CcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccC
Q 044868 293 LQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSR 372 (463)
Q Consensus 293 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 372 (463)
|+.+.+ +|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|++|++++
T Consensus 175 L~~l~l--------------------~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 175 MPLLNL--------------------SLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CTTCCE--------------------EEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred ccccce--------------------eeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 442111 566666666644444333 34788888888888865555667788888888888
Q ss_pred CCCCccCC
Q 044868 373 NFLDGVVP 380 (463)
Q Consensus 373 N~l~~~~p 380 (463)
|++++..+
T Consensus 234 N~~~c~c~ 241 (276)
T 2z62_A 234 NPWDCSCP 241 (276)
T ss_dssp SCBCCCTT
T ss_pred CcccccCC
Confidence 88887665
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.6e-29 Score=258.72 Aligned_cols=279 Identities=20% Similarity=0.126 Sum_probs=159.6
Q ss_pred CCCEEEcccCCCCCcc--cccccccccCCCCccEEEccCCCCCCCCCchhc-----CCCCCCcEEEeecCCCCCC----C
Q 044868 119 YLQSVFFFSCFTHTKT--TLSVSADRLYNSSLQQLSLRSNPALVGPIPPQI-----SSLKFLQILTLSQNRLNGQ----I 187 (463)
Q Consensus 119 ~L~~L~L~~~~~~~~~--~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~----~ 187 (463)
+|++|++++|.+...+ .++..+..+++ |++|++++| .+.+..+..+ ...++|++|++++|++++. +
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~--L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPT--LQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTT--CCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCc--eeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 4666666666543222 34555555555 666666666 4443322222 2244566666666666542 2
Q ss_pred ccccCCCCCCcEEEcccCCCCCCCchhcC-----CCCCCCEEEcccCcCCCC----CchhhcCCCCcCEEeccCCCCCCC
Q 044868 188 PVKIFSLNSLVHLDLSYNLLAGTIPVQVG-----NLRNLVGLDLSYNSLTGS----IPSTIGQLGMLQKLDLSSNSLTGS 258 (463)
Q Consensus 188 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 258 (463)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33444556666666666665543333222 244666666666666542 355555666677777766666542
Q ss_pred C-----chhhhcCCCCCEEEeeCCCCCCC----CchhhhCCCCCcEeecCCCCCCCCCchhhhC-----CCCCCEEeccC
Q 044868 259 I-----PDSIDKLSLLAFMALSNNKLTGN----FPKGLAKLQSLQYFLMDDNPMFIPLPVEFGI-----LVKLQELRLAN 324 (463)
Q Consensus 259 ~-----p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~ 324 (463)
. +..+..+++|++|++++|.+++. ++..+.++++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 11122456677777777766642 4555666677777777777665443333322 25677777777
Q ss_pred CCCCCC----CccccCCCCcccEEEcccccCCCCchhhhCC-----CCCCCeEEccCCCCCc----cCCCCchhhhccCC
Q 044868 325 SGYSGS----IPPSFSQLNNLSTLSLQNNRLTGEIPVVFGS-----LSHIYHLNLSRNFLDG----VVPFNSSFLKRLGR 391 (463)
Q Consensus 325 n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~ 391 (463)
|.+++. ++..+..+++|++|++++|++++..+..+.. .++|++|++++|++++ .+|..+..++.+ +
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L-~ 401 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL-R 401 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC-C
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc-c
Confidence 776654 3445555677777777777776544433322 5577777777777775 455555566677 7
Q ss_pred eEeccCCCCC
Q 044868 392 NLDLSGNPGL 401 (463)
Q Consensus 392 ~L~L~~N~~~ 401 (463)
+|++++|++.
T Consensus 402 ~L~l~~N~i~ 411 (461)
T 1z7x_W 402 ELDLSNNCLG 411 (461)
T ss_dssp EEECCSSSCC
T ss_pred EEECCCCCCC
Confidence 7777777654
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.1e-25 Score=237.28 Aligned_cols=258 Identities=26% Similarity=0.302 Sum_probs=209.2
Q ss_pred cEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS 169 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~ 169 (463)
.++.|++++.. +. .+|..+. ++|++|++++|.+ ..+|. .+++ |++|+|++| .+. .+|. .
T Consensus 41 ~l~~L~ls~n~-----L~-~lp~~l~--~~L~~L~L~~N~l---~~lp~---~l~~--L~~L~Ls~N-~l~-~lp~---~ 99 (622)
T 3g06_A 41 GNAVLNVGESG-----LT-TLPDCLP--AHITTLVIPDNNL---TSLPA---LPPE--LRTLEVSGN-QLT-SLPV---L 99 (622)
T ss_dssp CCCEEECCSSC-----CS-CCCSCCC--TTCSEEEECSCCC---SCCCC---CCTT--CCEEEECSC-CCS-CCCC---C
T ss_pred CCcEEEecCCC-----cC-ccChhhC--CCCcEEEecCCCC---CCCCC---cCCC--CCEEEcCCC-cCC-cCCC---C
Confidence 57889997532 33 6777665 8999999999976 35665 3455 999999999 776 4665 7
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEe
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 249 (463)
+++|++|++++|.++ .+|. .+++|++|++++|+++ .+|.. +++|++|++++|++++ +|. .+++|+.|+
T Consensus 100 l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~ 167 (622)
T 3g06_A 100 PPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLW 167 (622)
T ss_dssp CTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEE
Confidence 899999999999998 4565 5789999999999998 46653 4899999999999984 454 357899999
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
+++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+.. +|. .+++|++|++++|.+++
T Consensus 168 L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~ 235 (622)
T 3g06_A 168 AYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS 235 (622)
T ss_dssp CCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc
Confidence 99999985 55 457899999999999985 554 34789999999999875 343 35789999999999985
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCC
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c 402 (463)
+| ..+++|++|++++|+++ .+|. .+++|+.|+|++|+|+ .+|..+..++++ +.|++++|++..
T Consensus 236 -lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l~~ 298 (622)
T 3g06_A 236 -LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLSE 298 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCCCH
T ss_pred -CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCCCC
Confidence 55 45688999999999998 5665 5688999999999999 678788889999 999999999764
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4e-25 Score=210.21 Aligned_cols=204 Identities=27% Similarity=0.276 Sum_probs=147.1
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
.++++++++ .++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 18 ~~~l~~~~~-~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSK-KLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTS-CCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCC-CCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 889999998 676 4676554 689999999999996666689999999999999999996655667899999999999
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL 307 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 307 (463)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n------ 167 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN------ 167 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC------
Confidence 99999766667788888888888888888766666677777777777777666444334455555555555555
Q ss_pred chhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccC
Q 044868 308 PVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVV 379 (463)
Q Consensus 308 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 379 (463)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....
T Consensus 168 ------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 168 ------------------QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp ------------------CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ------------------cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 444433444555555666666666665444444555666666666666665443
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=4.6e-29 Score=255.32 Aligned_cols=303 Identities=19% Similarity=0.130 Sum_probs=215.5
Q ss_pred cEEEEECCCCCCCCCCccc----cccccccCCCCCCEEEcccCCCCCcccccccc-cccCC--CCccEEEccCCCCCCC-
Q 044868 90 HVTRLDFGTRPNPTCKKTA----TFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSA-DRLYN--SSLQQLSLRSNPALVG- 161 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g----~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~-~~l~~--~~L~~L~Ls~n~~l~~- 161 (463)
+++.|++++ |.+.. .++..+..+++|++|++++|.+. +..+..+ ..++. ++|++|++++| .+..
T Consensus 29 ~L~~L~L~~-----~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~ 100 (461)
T 1z7x_W 29 QCQVVRLDD-----CGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGA 100 (461)
T ss_dssp TCSEEEEES-----SCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--HHHHHHHHHTTCSTTCCCCEEECTTS-CCBGG
T ss_pred CccEEEccC-----CCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--hHHHHHHHHHHhhCCCceeEEEccCC-CCCHH
Confidence 466666653 22332 45677778888888888887652 2222222 22331 13888999888 6764
Q ss_pred ---CCchhcCCCCCCcEEEeecCCCCCCCccccC-----CCCCCcEEEcccCCCCCC----CchhcCCCCCCCEEEcccC
Q 044868 162 ---PIPPQISSLKFLQILTLSQNRLNGQIPVKIF-----SLNSLVHLDLSYNLLAGT----IPVQVGNLRNLVGLDLSYN 229 (463)
Q Consensus 162 ---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n 229 (463)
.++..+..+++|++|++++|.+++..+..+. ..++|++|++++|++++. ++..+..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 4577888888899999988887644333222 356788999998888763 3556667789999999998
Q ss_pred cCCCCCchhhc-----CCCCcCEEeccCCCCCCC----CchhhhcCCCCCEEEeeCCCCCCCCc-----hhhhCCCCCcE
Q 044868 230 SLTGSIPSTIG-----QLGMLQKLDLSSNSLTGS----IPDSIDKLSLLAFMALSNNKLTGNFP-----KGLAKLQSLQY 295 (463)
Q Consensus 230 ~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~ 295 (463)
.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++... ..+..+++|++
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 87754444443 356899999999988864 56777788999999999998864322 22235789999
Q ss_pred eecCCCCCCCC----CchhhhCCCCCCEEeccCCCCCCCCccccC-----CCCcccEEEcccccCCCC----chhhhCCC
Q 044868 296 FLMDDNPMFIP----LPVEFGILVKLQELRLANSGYSGSIPPSFS-----QLNNLSTLSLQNNRLTGE----IPVVFGSL 362 (463)
Q Consensus 296 L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~~~----~p~~l~~l 362 (463)
|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 99999988764 566677789999999999988754443332 236899999999999865 56677778
Q ss_pred CCCCeEEccCCCCCccCCCCchh-----hhccCCeEeccCCCCC
Q 044868 363 SHIYHLNLSRNFLDGVVPFNSSF-----LKRLGRNLDLSGNPGL 401 (463)
Q Consensus 363 ~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~~L~L~~N~~~ 401 (463)
++|++|++++|.+++..+..+.. .+.+ ++|++++|.+.
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~i~ 383 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVL-RVLWLADCDVS 383 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCC
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCce-EEEECCCCCCC
Confidence 99999999999988765443332 4577 89999999764
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=4.2e-25 Score=212.35 Aligned_cols=203 Identities=26% Similarity=0.259 Sum_probs=147.7
Q ss_pred ccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCC
Q 044868 140 ADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLR 219 (463)
Q Consensus 140 ~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 219 (463)
+.++++ +++++++++ .+. .+|..+. +++++|+|++|.+++..+..+.++++|++|++++|.+++ ++.. ..++
T Consensus 6 ~~~l~~--l~~l~~~~~-~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~ 77 (290)
T 1p9a_G 6 VSKVAS--HLEVNCDKR-NLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLP 77 (290)
T ss_dssp EECSTT--CCEEECTTS-CCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCT
T ss_pred ccccCC--ccEEECCCC-CCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCC
Confidence 556666 999999999 666 5666554 789999999999997778889999999999999999985 4433 7889
Q ss_pred CCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecC
Q 044868 220 NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMD 299 (463)
Q Consensus 220 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 299 (463)
+|++|++++|+++ .+|..+..+++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 9999999999988 677777888888888888888886666677777777777777777775555555666666666666
Q ss_pred CCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCC
Q 044868 300 DNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 300 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (463)
+|++.+..+..+..+++|++|+|++|+++ .+|..+...++|+.|+|++|.+.
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 66665544444455555555555555555 44444444445555555555543
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.4e-25 Score=213.65 Aligned_cols=209 Identities=23% Similarity=0.218 Sum_probs=147.8
Q ss_pred cCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 167 ISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 167 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 445666777777777665 333 35667777777777777764 2 3566777777777777777765555667777777
Q ss_pred EEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCC
Q 044868 247 KLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSG 326 (463)
Q Consensus 247 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 326 (463)
+|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 77777777776666666777777777777777776555566777777777777777777666667777788888888888
Q ss_pred CCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhh
Q 044868 327 YSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFL 386 (463)
Q Consensus 327 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 386 (463)
+++..+..+..+++|++|++++|.+.+. +++|+.++++.|.++|.+|..++.+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 8776666677778888888888877643 4467777788888888877665443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=2.5e-25 Score=211.96 Aligned_cols=211 Identities=24% Similarity=0.227 Sum_probs=174.0
Q ss_pred ccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCC
Q 044868 140 ADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLR 219 (463)
Q Consensus 140 ~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 219 (463)
...++. |++|++++| .+.. + ..+..+++|++|++++|.+++ ++ .+.++++|++|++++|.+++..+..+..++
T Consensus 37 ~~~l~~--L~~L~l~~~-~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 37 QNELNS--IDQIIANNS-DIKS-V-QGIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHHHTT--CCEEECTTS-CCCC-C-TTGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccccc--eeeeeeCCC-Cccc-c-cccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 445555 888888887 5543 2 347788889999999888875 33 678888999999999988877777788889
Q ss_pred CCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecC
Q 044868 220 NLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMD 299 (463)
Q Consensus 220 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 299 (463)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 99999999999887777778888999999999999887777777888999999999999987777778889999999999
Q ss_pred CCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCC
Q 044868 300 DNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSH 364 (463)
Q Consensus 300 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 364 (463)
+|.+.+..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|.+|.+++.++.
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 999988888888889999999999998774 3567899999999999999988876654
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=216.55 Aligned_cols=200 Identities=21% Similarity=0.168 Sum_probs=96.4
Q ss_pred CCCcEEEeecCCCCCCCcccc--CCCCCCcEEEcccCCCCCCCc----hhcCCCCCCCEEEcccCcCCCCCchhhcCCCC
Q 044868 171 KFLQILTLSQNRLNGQIPVKI--FSLNSLVHLDLSYNLLAGTIP----VQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGM 244 (463)
Q Consensus 171 ~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 244 (463)
++|++|++++|.+.+..|..+ .++++|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555555555544 455555555555555554322 22334555555555555555444445555555
Q ss_pred cCEEeccCCCCCCC--Cc--hhhhcCCCCCEEEeeCCCCCCCCch----hhhCCCCCcEeecCCCCCCCCCchhhhCC--
Q 044868 245 LQKLDLSSNSLTGS--IP--DSIDKLSLLAFMALSNNKLTGNFPK----GLAKLQSLQYFLMDDNPMFIPLPVEFGIL-- 314 (463)
Q Consensus 245 L~~L~L~~n~l~~~--~p--~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-- 314 (463)
|++|++++|++.+. ++ ..+..+++|++|++++|+++ .++. .+..+++|++|+|++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555554321 11 11234445555555555544 1222 12344555555555555544444433333
Q ss_pred -CCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC
Q 044868 315 -VKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 315 -~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 376 (463)
++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 35555555555555 3444332 4555555555555532 22 344455555555555554
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=6.3e-26 Score=222.34 Aligned_cols=231 Identities=17% Similarity=0.144 Sum_probs=154.2
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCC-CccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQ-IPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDL 226 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 226 (463)
+++|++++| .+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 72 l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 72 VIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp CSEEECTTC-EECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ceEEEcCCc-cccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 777777777 66665554 55677788888888777654 6666777778888888888777677777777778888888
Q ss_pred ccC-cCCCC-CchhhcCCCCcCEEeccCC-CCCCC-CchhhhcCC-CCCEEEeeCC--CCC-CCCchhhhCCCCCcEeec
Q 044868 227 SYN-SLTGS-IPSTIGQLGMLQKLDLSSN-SLTGS-IPDSIDKLS-LLAFMALSNN--KLT-GNFPKGLAKLQSLQYFLM 298 (463)
Q Consensus 227 ~~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~L 298 (463)
++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+.++++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 777 56542 5555677777888888777 77653 456667777 7777777777 444 345566667777777777
Q ss_pred CCCC-CCCCCchhhhCCCCCCEEeccCCC-CCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCC
Q 044868 299 DDNP-MFIPLPVEFGILVKLQELRLANSG-YSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLD 376 (463)
Q Consensus 299 ~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 376 (463)
++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++...-..+. .+++.|++++|+++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFT 306 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCc
Confidence 7777 555666667777777777777774 32222224566777777777777 4432222221 23555567777777
Q ss_pred ccCCCCc
Q 044868 377 GVVPFNS 383 (463)
Q Consensus 377 ~~~p~~~ 383 (463)
+..|..+
T Consensus 307 ~~~~~~~ 313 (336)
T 2ast_B 307 TIARPTI 313 (336)
T ss_dssp CTTCSSC
T ss_pred cccCCcc
Confidence 7666544
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=1.6e-26 Score=231.28 Aligned_cols=259 Identities=20% Similarity=0.206 Sum_probs=173.1
Q ss_pred ccccccccCCCCccEEEccCCCCCCCCC----chhcCCCCCCcEEEeecCC---CCCCCcccc-------CCCCCCcEEE
Q 044868 136 LSVSADRLYNSSLQQLSLRSNPALVGPI----PPQISSLKFLQILTLSQNR---LNGQIPVKI-------FSLNSLVHLD 201 (463)
Q Consensus 136 ip~~~~~l~~~~L~~L~Ls~n~~l~~~~----p~~l~~l~~L~~L~L~~n~---l~~~~p~~l-------~~l~~L~~L~ 201 (463)
++..+..+++ |++|+|++| .+.+.. +..+..+++|++|+|++|. +++.+|..+ ..+++|++|+
T Consensus 24 l~~~l~~~~~--L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 24 VFAVLLEDDS--VKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TSHHHHHCSC--CCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHhcCCC--ccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3334444444 566666655 444432 2235566666677666643 333444443 5677777777
Q ss_pred cccCCCCC----CCchhcCCCCCCCEEEcccCcCCCCCchh----hcCC---------CCcCEEeccCCCCC-CCCc---
Q 044868 202 LSYNLLAG----TIPVQVGNLRNLVGLDLSYNSLTGSIPST----IGQL---------GMLQKLDLSSNSLT-GSIP--- 260 (463)
Q Consensus 202 Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l---------~~L~~L~L~~n~l~-~~~p--- 260 (463)
|++|.+.+ .+|..+..+++|++|+|++|.++...+.. +..+ ++|++|++++|+++ +.++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 77777775 35666677777777777777775333322 3333 78888888888876 3344
Q ss_pred hhhhcCCCCCEEEeeCCCCCC-----CCchhhhCCCCCcEeecCCCCCC----CCCchhhhCCCCCCEEeccCCCCCCC-
Q 044868 261 DSIDKLSLLAFMALSNNKLTG-----NFPKGLAKLQSLQYFLMDDNPMF----IPLPVEFGILVKLQELRLANSGYSGS- 330 (463)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~- 330 (463)
..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 456677888888888888762 23336778888888888888885 55677788888899999999888765
Q ss_pred ---Ccccc--CCCCcccEEEcccccCCC----Cchhhh-CCCCCCCeEEccCCCCCccCC--CC-chhhhccCCeEeccC
Q 044868 331 ---IPPSF--SQLNNLSTLSLQNNRLTG----EIPVVF-GSLSHIYHLNLSRNFLDGVVP--FN-SSFLKRLGRNLDLSG 397 (463)
Q Consensus 331 ---~p~~l--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~~~~p--~~-~~~l~~L~~~L~L~~ 397 (463)
++..+ +.+++|++|+|++|++++ .+|..+ .++++|++|++++|++++..+ .. ...++.+ +..++..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~-~~~~l~~ 339 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR-GRGELDE 339 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHH-TCCEECC
T ss_pred HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhc-Ccchhhh
Confidence 45555 348899999999999986 477777 568999999999999987764 22 2234454 4555554
Q ss_pred C
Q 044868 398 N 398 (463)
Q Consensus 398 N 398 (463)
+
T Consensus 340 ~ 340 (386)
T 2ca6_A 340 L 340 (386)
T ss_dssp C
T ss_pred c
Confidence 4
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=2.3e-25 Score=218.25 Aligned_cols=249 Identities=19% Similarity=0.194 Sum_probs=206.7
Q ss_pred ccEEEccCCCCCCCCCchhcCCC--CCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCC-CchhcCCCCCCCEE
Q 044868 148 LQQLSLRSNPALVGPIPPQISSL--KFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGT-IPVQVGNLRNLVGL 224 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L 224 (463)
++.++++++ .+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 677777777 444 5566667 8999999999999976654 67899999999999998865 88889999999999
Q ss_pred EcccCcCCCCCchhhcCCCCcCEEeccCC-CCCCC-CchhhhcCCCCCEEEeeCC-CCCCC-CchhhhCCC-CCcEeecC
Q 044868 225 DLSYNSLTGSIPSTIGQLGMLQKLDLSSN-SLTGS-IPDSIDKLSLLAFMALSNN-KLTGN-FPKGLAKLQ-SLQYFLMD 299 (463)
Q Consensus 225 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~L~ 299 (463)
++++|.+++..+..++.+++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999999888889999999999999999 67753 6777889999999999999 88864 677789999 99999999
Q ss_pred CC--CCC-CCCchhhhCCCCCCEEeccCCC-CCCCCccccCCCCcccEEEccccc-CCCCchhhhCCCCCCCeEEccCCC
Q 044868 300 DN--PMF-IPLPVEFGILVKLQELRLANSG-YSGSIPPSFSQLNNLSTLSLQNNR-LTGEIPVVFGSLSHIYHLNLSRNF 374 (463)
Q Consensus 300 ~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~ 374 (463)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 555 4567778899999999999999 777788889999999999999995 44333336788999999999999
Q ss_pred CCccCCCCchhhh-ccCCeEeccCCCCCCCCcc
Q 044868 375 LDGVVPFNSSFLK-RLGRNLDLSGNPGLCLNPA 406 (463)
Q Consensus 375 l~~~~p~~~~~l~-~L~~~L~L~~N~~~c~~~~ 406 (463)
++ ...+..+. .+ ..|++++|.+....+.
T Consensus 283 i~---~~~~~~l~~~l-~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 VP---DGTLQLLKEAL-PHLQINCSHFTTIARP 311 (336)
T ss_dssp SC---TTCHHHHHHHS-TTSEESCCCSCCTTCS
T ss_pred cC---HHHHHHHHhhC-cceEEecccCccccCC
Confidence 33 33455554 47 7889999887654433
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=9.3e-25 Score=211.96 Aligned_cols=227 Identities=17% Similarity=0.150 Sum_probs=185.3
Q ss_pred CCCCCEEEcccCCCCCccccccc--ccccCCCCccEEEccCCCCCCCCCchhc--CCCCCCcEEEeecCCCCCCCc----
Q 044868 117 LSYLQSVFFFSCFTHTKTTLSVS--ADRLYNSSLQQLSLRSNPALVGPIPPQI--SSLKFLQILTLSQNRLNGQIP---- 188 (463)
Q Consensus 117 l~~L~~L~L~~~~~~~~~~ip~~--~~~l~~~~L~~L~Ls~n~~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p---- 188 (463)
...++.+.+.++... ...+... ...+++ |++|++++| .+.+..|..+ ..+++|++|++++|.+++..+
T Consensus 63 ~~~l~~l~l~~~~~~-~~~~~~~~~~~~~~~--L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~ 138 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP-AQLLVGALRVLAYSR--LKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAE 138 (310)
T ss_dssp SCCCCEEEECSCCCB-HHHHHHHHHHHHHSC--CCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred hcceeEEEEeCCcCC-HHHHHHHHHhcccCc--eeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHH
Confidence 445788888876542 1112211 223444 999999999 8999999888 999999999999999997655
Q ss_pred cccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCC--Cc--hhhcCCCCcCEEeccCCCCCCCCch---
Q 044868 189 VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGS--IP--STIGQLGMLQKLDLSSNSLTGSIPD--- 261 (463)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p--~~l~~l~~L~~L~L~~n~l~~~~p~--- 261 (463)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++|+++ .++.
T Consensus 139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~ 217 (310)
T 4glp_A 139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCA 217 (310)
T ss_dssp HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHH
T ss_pred HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHH
Confidence 3456799999999999999988888999999999999999998742 22 23468899999999999997 3333
Q ss_pred -hhhcCCCCCEEEeeCCCCCCCCchhhhCC---CCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCC
Q 044868 262 -SIDKLSLLAFMALSNNKLTGNFPKGLAKL---QSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQ 337 (463)
Q Consensus 262 -~l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 337 (463)
.+..+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|+|++|++++. |. +..
T Consensus 218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~ 292 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE 292 (310)
T ss_dssp HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTS
T ss_pred HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhh
Confidence 35788999999999999998878877776 69999999999998 5666654 7999999999999964 43 678
Q ss_pred CCcccEEEcccccCCC
Q 044868 338 LNNLSTLSLQNNRLTG 353 (463)
Q Consensus 338 l~~L~~L~Ls~N~l~~ 353 (463)
+++|++|++++|++++
T Consensus 293 l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 293 LPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCCSCEECSSTTTSC
T ss_pred CCCccEEECcCCCCCC
Confidence 8999999999999974
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.7e-26 Score=228.69 Aligned_cols=243 Identities=19% Similarity=0.169 Sum_probs=201.4
Q ss_pred CCchhcCCCCCCcEEEeecCCCCCCCc----cccCCCCCCcEEEcccCC---CCCCCchhc-------CCCCCCCEEEcc
Q 044868 162 PIPPQISSLKFLQILTLSQNRLNGQIP----VKIFSLNSLVHLDLSYNL---LAGTIPVQV-------GNLRNLVGLDLS 227 (463)
Q Consensus 162 ~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n~---l~~~~p~~l-------~~l~~L~~L~L~ 227 (463)
.++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|. +.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 566778889999999999999986533 447789999999999964 455666655 789999999999
Q ss_pred cCcCCC----CCchhhcCCCCcCEEeccCCCCCCCCchhhh----cC---------CCCCEEEeeCCCCC-CCCc---hh
Q 044868 228 YNSLTG----SIPSTIGQLGMLQKLDLSSNSLTGSIPDSID----KL---------SLLAFMALSNNKLT-GNFP---KG 286 (463)
Q Consensus 228 ~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~l~-~~~p---~~ 286 (463)
+|.+++ .++..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999997 4777889999999999999999754444343 34 89999999999998 4455 46
Q ss_pred hhCCCCCcEeecCCCCCCC-----CCchhhhCCCCCCEEeccCCCCC----CCCccccCCCCcccEEEcccccCCCC---
Q 044868 287 LAKLQSLQYFLMDDNPMFI-----PLPVEFGILVKLQELRLANSGYS----GSIPPSFSQLNNLSTLSLQNNRLTGE--- 354 (463)
Q Consensus 287 l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~--- 354 (463)
+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|++++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 7789999999999999873 23447788999999999999996 56788889999999999999999866
Q ss_pred -chhhh--CCCCCCCeEEccCCCCCc----cCCCCc-hhhhccCCeEeccCCCCCCCCc
Q 044868 355 -IPVVF--GSLSHIYHLNLSRNFLDG----VVPFNS-SFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 355 -~p~~l--~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
++..+ +.+++|++|+|++|.+++ .+|..+ ..++.| +.|++++|++....+
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L-~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL-LFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC-CEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCc-eEEEccCCcCCcchh
Confidence 56666 348999999999999998 466666 457899 999999999887664
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.7e-23 Score=220.81 Aligned_cols=249 Identities=29% Similarity=0.278 Sum_probs=203.9
Q ss_pred ccEEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcC
Q 044868 89 LHVTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQIS 168 (463)
Q Consensus 89 ~~v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~ 168 (463)
.+++.|+++++. +. .+|. .+++|++|++++|.+ ..+|. .+++ |++|++++| .+.+ +|.
T Consensus 61 ~~L~~L~L~~N~-----l~-~lp~---~l~~L~~L~Ls~N~l---~~lp~---~l~~--L~~L~Ls~N-~l~~-l~~--- 118 (622)
T 3g06_A 61 AHITTLVIPDNN-----LT-SLPA---LPPELRTLEVSGNQL---TSLPV---LPPG--LLELSIFSN-PLTH-LPA--- 118 (622)
T ss_dssp TTCSEEEECSCC-----CS-CCCC---CCTTCCEEEECSCCC---SCCCC---CCTT--CCEEEECSC-CCCC-CCC---
T ss_pred CCCcEEEecCCC-----CC-CCCC---cCCCCCEEEcCCCcC---CcCCC---CCCC--CCEEECcCC-cCCC-CCC---
Confidence 367888887542 22 4565 579999999999975 35665 4555 999999999 7765 444
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEE
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKL 248 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 248 (463)
.+++|++|++++|+++ .+|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|
T Consensus 119 ~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L 186 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQEL 186 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEE
T ss_pred CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEE
Confidence 6789999999999998 46654 4899999999999984 554 35789999999999994 66 457899999
Q ss_pred eccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCC
Q 044868 249 DLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 249 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 328 (463)
++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++ +| ..+++|++|++++|+++
T Consensus 187 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 187 SVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred ECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 999999985 554 3578999999999998 4554 35789999999999987 44 45689999999999998
Q ss_pred CCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhc
Q 044868 329 GSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKR 388 (463)
Q Consensus 329 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 388 (463)
.+|. .+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..++.
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 5665 5689999999999999 78999999999999999999999988876665544
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=6e-26 Score=225.27 Aligned_cols=255 Identities=16% Similarity=0.153 Sum_probs=182.4
Q ss_pred EEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCc----hhcCCCC-CCcEEEeecCCCCCCCccccCCC--
Q 044868 122 SVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIP----PQISSLK-FLQILTLSQNRLNGQIPVKIFSL-- 194 (463)
Q Consensus 122 ~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-- 194 (463)
+++++.|.+ .+.+|..+...++ |++|+|++| .+.+..+ ..+.+++ +|++|+|++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~--~~~~~~~~~~~~~--L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPG--SNPVEEFTSIPHG--VTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTT--CCHHHHHHTSCTT--CCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccc--hHHHHHHHhCCCC--ceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 355666654 5666666666655 889999888 7777666 6677787 88899999888887666666654
Q ss_pred ---CCCcEEEcccCCCCCCCchhc----CCC-CCCCEEEcccCcCCCCCchhh----cC-CCCcCEEeccCCCCCCCCc-
Q 044868 195 ---NSLVHLDLSYNLLAGTIPVQV----GNL-RNLVGLDLSYNSLTGSIPSTI----GQ-LGMLQKLDLSSNSLTGSIP- 260 (463)
Q Consensus 195 ---~~L~~L~Ls~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~L~~n~l~~~~p- 260 (463)
++|++|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++..+
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 888899998888886666543 344 788889998888876655444 33 3588888888888875433
Q ss_pred ---hhhhcCC-CCCEEEeeCCCCCCCCchhhh----CC-CCCcEeecCCCCCCCC----CchhhhC-CCCCCEEeccCCC
Q 044868 261 ---DSIDKLS-LLAFMALSNNKLTGNFPKGLA----KL-QSLQYFLMDDNPMFIP----LPVEFGI-LVKLQELRLANSG 326 (463)
Q Consensus 261 ---~~l~~l~-~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~ 326 (463)
..+..++ +|++|++++|.+++..+..+. .. ++|++|+|++|.+.+. ++..+.. .++|++|+|++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3345555 888888888888876665443 44 5888888888888764 3334444 4588888888888
Q ss_pred CCCCCc----cccCCCCcccEEEcccccCCCC-------chhhhCCCCCCCeEEccCCCCCccCCC
Q 044868 327 YSGSIP----PSFSQLNNLSTLSLQNNRLTGE-------IPVVFGSLSHIYHLNLSRNFLDGVVPF 381 (463)
Q Consensus 327 l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~L~~N~l~~~~p~ 381 (463)
+++..+ ..+..+++|++|+|++|.+.+. ++..+..+++|++||+++|++.+..+.
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 886554 3446678888888888885433 233566777888888888888876553
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=7.3e-24 Score=199.25 Aligned_cols=180 Identities=26% Similarity=0.278 Sum_probs=105.4
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEee
Q 044868 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALS 275 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 275 (463)
..++++++++.++ .+|..+. +++++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777666 5555443 466666666666666555566666666666666666666555556666666666666
Q ss_pred CCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCc
Q 044868 276 NNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEI 355 (463)
Q Consensus 276 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 355 (463)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 66666544455555566666666666555554444555555555555555555444444555555555555555555444
Q ss_pred hhhhCCCCCCCeEEccCCCCCcc
Q 044868 356 PVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 356 p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
+..+..+++|++|++++|++++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 44455555555555555555543
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.3e-25 Score=221.00 Aligned_cols=249 Identities=14% Similarity=0.082 Sum_probs=155.9
Q ss_pred CccccccccccCCCCCCEEEcccCCCCCccccc----ccccccC-CCCccEEEccCCCCCCCCCchhcCCC-----CCCc
Q 044868 105 KKTATFPYQIFSLSYLQSVFFFSCFTHTKTTLS----VSADRLY-NSSLQQLSLRSNPALVGPIPPQISSL-----KFLQ 174 (463)
Q Consensus 105 ~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~ip----~~~~~l~-~~~L~~L~Ls~n~~l~~~~p~~l~~l-----~~L~ 174 (463)
.+.|.+|..+...++|++|++++|.+. +..+ ..+..++ + |++|+|++| .+.+..+..+..+ ++|+
T Consensus 9 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~~--L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 9 PGSNPVEEFTSIPHGVTSLDLSLNNLY--SISTVELIQAFANTPAS--VTSLNLSGN-SLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp TTCCHHHHHHTSCTTCCEEECTTSCGG--GSCHHHHHHHHHTCCTT--CCEEECCSS-CGGGSCHHHHHHHHHTSCTTCC
T ss_pred cchHHHHHHHhCCCCceEEEccCCCCC--hHHHHHHHHHHHhCCCc--eeEEECcCC-CCCHHHHHHHHHHHhccCCCcc
Confidence 456666666666666777777777642 2212 3445555 4 777777777 6776666666554 7777
Q ss_pred EEEeecCCCCCCCccccC----CC-CCCcEEEcccCCCCCCCchhc----CC-CCCCCEEEcccCcCCCCC----chhhc
Q 044868 175 ILTLSQNRLNGQIPVKIF----SL-NSLVHLDLSYNLLAGTIPVQV----GN-LRNLVGLDLSYNSLTGSI----PSTIG 240 (463)
Q Consensus 175 ~L~L~~n~l~~~~p~~l~----~l-~~L~~L~Ls~n~l~~~~p~~l----~~-l~~L~~L~L~~n~l~~~~----p~~l~ 240 (463)
+|+|++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++.. +..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 777777777655554333 33 677777777777765544433 33 257777777777776433 33344
Q ss_pred CCC-CcCEEeccCCCCCCCCchhhh----cC-CCCCEEEeeCCCCCCC----CchhhhC-CCCCcEeecCCCCCCCCCch
Q 044868 241 QLG-MLQKLDLSSNSLTGSIPDSID----KL-SLLAFMALSNNKLTGN----FPKGLAK-LQSLQYFLMDDNPMFIPLPV 309 (463)
Q Consensus 241 ~l~-~L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~L~~n~l~~~~~~ 309 (463)
.++ +|++|++++|++++..+..+. .. ++|++|++++|.+++. ++..+.. .++|++|+|++|.+.+..+.
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 454 777777777777765554333 33 4777777777777643 3444444 34777777777777665542
Q ss_pred h----hhCCCCCCEEeccCCCCCCCC-------ccccCCCCcccEEEcccccCCCCchhh
Q 044868 310 E----FGILVKLQELRLANSGYSGSI-------PPSFSQLNNLSTLSLQNNRLTGEIPVV 358 (463)
Q Consensus 310 ~----l~~l~~L~~L~L~~n~l~~~~-------p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 358 (463)
. +..+++|++|++++|.+.+.. +..+..+++|+.||+++|++.+..+..
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 2 355677777777777744322 235566777777777777777554433
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=6.7e-24 Score=197.94 Aligned_cols=199 Identities=22% Similarity=0.229 Sum_probs=100.4
Q ss_pred CCcEEEeecCCCCCCCccccCCCCCCcEEEcccCC-CCCCCchhcCCCCCCCEEEccc-CcCCCCCchhhcCCCCcCEEe
Q 044868 172 FLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNL-LAGTIPVQVGNLRNLVGLDLSY-NSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~ 249 (463)
+|++|++++|++++..+..+.++++|++|++++|. +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555553333345555555555555554 4433333455555555555554 555533334444555555555
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCC-CCCCCCchhhhCCCCCC-EEeccCCCC
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDN-PMFIPLPVEFGILVKLQ-ELRLANSGY 327 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~n~l 327 (463)
+++|++++ +|. +..+++|+ .|++|++++| .+.+..+..+..+++|+ +|++++|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 55555443 333 44444444 0005555555 44444444455555555 555555555
Q ss_pred CCCCcc-ccCCCCcccEEEccccc-CCCCchhhhCCC-CCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCC
Q 044868 328 SGSIPP-SFSQLNNLSTLSLQNNR-LTGEIPVVFGSL-SHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNP 399 (463)
Q Consensus 328 ~~~~p~-~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~ 399 (463)
+ .+|. .+.. ++|++|++++|+ +++..+..+..+ ++|++|++++|++++..+. .++.+ +.|+++++.
T Consensus 169 ~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L-~~L~l~~~~ 237 (239)
T 2xwt_C 169 T-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHL-KELIARNTW 237 (239)
T ss_dssp C-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTC-SEEECTTC-
T ss_pred c-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccC-ceeeccCcc
Confidence 5 3332 2333 566666666663 654444555666 6666666666666643332 34455 566665553
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=6.7e-24 Score=197.90 Aligned_cols=204 Identities=18% Similarity=0.176 Sum_probs=148.0
Q ss_pred ccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCC-CCCCCccccCCCCCCcEEEccc-CCCCCCC
Q 044868 134 TTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNR-LNGQIPVKIFSLNSLVHLDLSY-NLLAGTI 211 (463)
Q Consensus 134 ~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~ 211 (463)
..+|. +.. +|++|++++| .+.+..+..|+++++|++|++++|+ ++...+..+.++++|++|++++ |++++..
T Consensus 24 ~~ip~-~~~----~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 24 QRIPS-LPP----STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp SSCCC-CCT----TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cccCC-CCC----cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 45665 322 4999999999 8887777789999999999999997 8755555788999999999999 9999766
Q ss_pred chhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC---EEeccCC-CCCCCCchhhhcCCCCC-EEEeeCCCCCCCCchh
Q 044868 212 PVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ---KLDLSSN-SLTGSIPDSIDKLSLLA-FMALSNNKLTGNFPKG 286 (463)
Q Consensus 212 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~ 286 (463)
+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..+.++++|+ +|++++|.++ .+|..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence 6789999999999999999995 665 88888888 9999998 88765556677777888 8888877777 44433
Q ss_pred hhCCCCCcEeecCCCC-CCCCCchhhhCC-CCCCEEeccCCCCCCCCccccCCCCcccEEEcccc
Q 044868 287 LAKLQSLQYFLMDDNP-MFIPLPVEFGIL-VKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNN 349 (463)
Q Consensus 287 l~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 349 (463)
....++|++|++++|+ +.+..+..+..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 3223566666666663 554444455555 555555555555552 2222 3445555555443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=5.6e-23 Score=193.21 Aligned_cols=179 Identities=26% Similarity=0.273 Sum_probs=85.1
Q ss_pred CCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCC
Q 044868 221 LVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDD 300 (463)
Q Consensus 221 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 300 (463)
.++++++++.++ .+|..+. +++++|++++|++++..+..+.++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 344444444444 3333332 3445555555555444444444455555555555555444444444455555555555
Q ss_pred CCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCC
Q 044868 301 NPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 301 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 380 (463)
|.+.+..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 55544444444444555555555555543333344444555555555555543333344444555555555555554444
Q ss_pred CCchhhhccCCeEeccCCCCCCC
Q 044868 381 FNSSFLKRLGRNLDLSGNPGLCL 403 (463)
Q Consensus 381 ~~~~~l~~L~~~L~L~~N~~~c~ 403 (463)
..+..++++ +.|++++|++.|.
T Consensus 173 ~~~~~l~~L-~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKL-QTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTC-CEEECCSCCBCTT
T ss_pred HHHhCCCCC-CEEEeeCCceeCC
Confidence 444444444 4555555555444
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.9e-23 Score=200.35 Aligned_cols=192 Identities=26% Similarity=0.369 Sum_probs=126.1
Q ss_pred ccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCC
Q 044868 142 RLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNL 221 (463)
Q Consensus 142 ~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 221 (463)
.+++ |++|++++| .+.. +| .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+++ ++ .+..+++|
T Consensus 39 ~l~~--L~~L~l~~~-~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L 109 (308)
T 1h6u_A 39 DLDG--ITTLSAFGT-GVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSI 109 (308)
T ss_dssp HHHT--CCEEECTTS-CCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTC
T ss_pred HcCC--cCEEEeeCC-CccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCC
Confidence 4555 777777777 5543 34 46677777777777777763 343 6777777777777777764 33 46677777
Q ss_pred CEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCC
Q 044868 222 VGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDN 301 (463)
Q Consensus 222 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 301 (463)
++|++++|++++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCC
Confidence 777777777764 33 26677777777777777764433 6667777777777777764 333 666777777777777
Q ss_pred CCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCC
Q 044868 302 PMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 302 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (463)
.+.+..+ +..+++|++|++++|++++.. .+..+++|++|++++|+++
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 7655433 566667777777777666443 2566666777777776665
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=1.8e-22 Score=195.65 Aligned_cols=195 Identities=26% Similarity=0.377 Sum_probs=136.3
Q ss_pred cCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcC
Q 044868 167 ISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQ 246 (463)
Q Consensus 167 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 246 (463)
+.++++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|++++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 345677777777777776 344 466777777777777777743 33 7777777777777777764 33 567777777
Q ss_pred EEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCC
Q 044868 247 KLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSG 326 (463)
Q Consensus 247 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 326 (463)
+|++++|++++. +. +..+++|++|++++|.+++. +. +..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 777777777753 32 67777777777777777743 32 7777777777777777765433 6777777777777777
Q ss_pred CCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCc
Q 044868 327 YSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDG 377 (463)
Q Consensus 327 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 377 (463)
+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 774432 6677777777777777774442 6777777777777777765
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=1.4e-22 Score=211.42 Aligned_cols=184 Identities=27% Similarity=0.389 Sum_probs=112.9
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|++++| .+.+ +|..+. ++|++|+|++|+++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 61 L~~L~Ls~n-~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 61 FSELQLNRL-NLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp CSEEECCSS-CCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred ccEEEeCCC-CCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 888888888 6765 666553 67888888888887 566 346778888888888775 665 544 77777777
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL 307 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 307 (463)
+|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|+|++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 554 46677777777777764 444 45667777777776664 444 43 56666666666665 33
Q ss_pred chhhhCCCCC-------CEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhC
Q 044868 308 PVEFGILVKL-------QELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFG 360 (463)
Q Consensus 308 ~~~l~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 360 (463)
|. +.. +| +.|+|++|.++ .+|..+..+++|++|+|++|++++.+|..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 33 322 34 55555555554 3444444445555555555555544444443
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=4.4e-22 Score=181.48 Aligned_cols=132 Identities=27% Similarity=0.247 Sum_probs=78.2
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|++++| .+.+..+..++++++|++|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 30 l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 30 TTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp CSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 666666666 6665555556677777777777777764444445666777777777776664444445666666666666
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLT 280 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 280 (463)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 66666444444555555555555555555444334444555555555555433
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=6.6e-22 Score=180.33 Aligned_cols=160 Identities=26% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEee
Q 044868 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALS 275 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 275 (463)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333334444444444444444443333334444445555555
Q ss_pred CCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCc
Q 044868 276 NNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEI 355 (463)
Q Consensus 276 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 355 (463)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+++|++|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 554443333334444444444444444444443334444455555555554332 2334555555555555555
Q ss_pred hhhhCCC
Q 044868 356 PVVFGSL 362 (463)
Q Consensus 356 p~~l~~l 362 (463)
|..++.+
T Consensus 182 p~~~~~l 188 (208)
T 2o6s_A 182 RNSAGSV 188 (208)
T ss_dssp BCTTSSB
T ss_pred eccCccc
Confidence 5544433
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=2.7e-23 Score=219.22 Aligned_cols=235 Identities=14% Similarity=0.069 Sum_probs=159.3
Q ss_pred hcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCc-hhcCCCCCCCEEEcccCcCCCCCchhhcCCCC
Q 044868 166 QISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIP-VQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGM 244 (463)
Q Consensus 166 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 244 (463)
.+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 344445555555544322 2455556667778888888877654333 33567778888888733222233444456788
Q ss_pred cCEEeccC-----------CCCCCC-CchhhhcCCCCCEEEeeCCCCCCCCchhhhC-CCCCcEeecC----CCCCCCC-
Q 044868 245 LQKLDLSS-----------NSLTGS-IPDSIDKLSLLAFMALSNNKLTGNFPKGLAK-LQSLQYFLMD----DNPMFIP- 306 (463)
Q Consensus 245 L~~L~L~~-----------n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~- 306 (463)
|++|++++ |.+++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 88888883 555543 2233456888999999888888766666665 8889999996 5667653
Q ss_pred ----CchhhhCCCCCCEEeccCCC--CCCCCccccC-CCCcccEEEcccccCCCC-chhhhCCCCCCCeEEccCCCCCcc
Q 044868 307 ----LPVEFGILVKLQELRLANSG--YSGSIPPSFS-QLNNLSTLSLQNNRLTGE-IPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 307 ----~~~~l~~l~~L~~L~L~~n~--l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
++..+..+++|++|+++.|. +++..+..+. .+++|++|++++|++++. ++..+..+++|++|+|++|.+++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 33446778899999997543 6655444443 478999999999999863 556678899999999999998754
Q ss_pred -CCCCchhhhccCCeEeccCCCCCC
Q 044868 379 -VPFNSSFLKRLGRNLDLSGNPGLC 402 (463)
Q Consensus 379 -~p~~~~~l~~L~~~L~L~~N~~~c 402 (463)
++.....++.| +.|++++|++..
T Consensus 504 ~~~~~~~~l~~L-~~L~ls~n~it~ 527 (592)
T 3ogk_B 504 AIAAAVTKLPSL-RYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHCSSC-CEEEEESCBCCT
T ss_pred HHHHHHHhcCcc-CeeECcCCcCCH
Confidence 33334567888 999999998543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3e-21 Score=190.46 Aligned_cols=219 Identities=18% Similarity=0.072 Sum_probs=99.2
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCcc-ccCCCCCCcE-EEcccCCCCCCCchhcCCCCCCCEEE
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPV-KIFSLNSLVH-LDLSYNLLAGTIPVQVGNLRNLVGLD 225 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~ 225 (463)
+++|+|++| .+....+..|.++++|++|+|++|++.+.+|. .|.+++++++ +.++.|+++...|..|..+++|++|+
T Consensus 32 l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 32 AIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp CSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 444445444 44332223455555555555555555443432 3344554443 33444555544444555555555555
Q ss_pred cccCcCCCCCchhhcCCCCcCEEeccC-CCCCCCCchhhhcCC-CCCEEEeeCCCCCCCCchhhhCCCCCcEeecCC-CC
Q 044868 226 LSYNSLTGSIPSTIGQLGMLQKLDLSS-NSLTGSIPDSIDKLS-LLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDD-NP 302 (463)
Q Consensus 226 L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~ 302 (463)
+++|++....+..+....++..|++.+ +++....+..+..+. .++.|++++|+++ .++.......+|+++++.+ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCc
Confidence 555555543333333444455555543 233322222333332 3555555555555 2333333344555555543 33
Q ss_pred CCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccC
Q 044868 303 MFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSR 372 (463)
Q Consensus 303 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 372 (463)
+....+..|..+++|++|+|++|+++. +|.. .+.+|+.|.+.++.-...+| .+..+++|+.+++.+
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 322222344555555555555555552 2221 12333444433332222444 245555555555543
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=4e-21 Score=200.38 Aligned_cols=186 Identities=26% Similarity=0.350 Sum_probs=87.9
Q ss_pred CCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEecc
Q 044868 172 FLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLS 251 (463)
Q Consensus 172 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 251 (463)
+|++|++++|.+++ +|..+. ++|++|+|++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555543 444332 44555555555554 344 234455555555555553 343 332 55555555
Q ss_pred CCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCC
Q 044868 252 SNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSI 331 (463)
Q Consensus 252 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 331 (463)
+|++++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|++|+|++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 555553 333 34555555555555543 333 34455555555555544 333 32 45555555555554 33
Q ss_pred ccccCCCCcc-------cEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchh
Q 044868 332 PPSFSQLNNL-------STLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSF 385 (463)
Q Consensus 332 p~~l~~l~~L-------~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 385 (463)
|. +.. +| ++|+|++|+++ .+|..+..+++|+.|+|++|++++.+|..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 33 322 34 55555555555 34444444555555555555555544444433
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.5e-21 Score=178.28 Aligned_cols=161 Identities=21% Similarity=0.236 Sum_probs=126.0
Q ss_pred CEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCC
Q 044868 246 QKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANS 325 (463)
Q Consensus 246 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 325 (463)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..+..+++|++|+|++|.+.+..|..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 4454432 56777777777777655556777777777788777777777777888888888888888
Q ss_pred CCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 326 GYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 326 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..++.+ +.|++++|+|.|+|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAI-QTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCEECSGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCC-CEEEeCCCCcCCCCc
Confidence 8885555567888889999999999887778888888999999999999998877778888888 899999999999998
Q ss_pred ccccc
Q 044868 406 AEAYS 410 (463)
Q Consensus 406 ~~~~~ 410 (463)
..|+.
T Consensus 170 l~~l~ 174 (220)
T 2v9t_B 170 LKWLA 174 (220)
T ss_dssp GHHHH
T ss_pred cHHHH
Confidence 88754
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.2e-21 Score=190.30 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=188.0
Q ss_pred cEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCc-cccCCCCCCcEEEcccCCCCCCCc-hhcCCCCCCCE-EE
Q 044868 149 QQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIP-VKIFSLNSLVHLDLSYNLLAGTIP-VQVGNLRNLVG-LD 225 (463)
Q Consensus 149 ~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~ 225 (463)
++++.+++ +++ .+|..+ .+++++|+|++|+++ .+| ..|.++++|++|+|++|++.+.+| ..|.+++++++ +.
T Consensus 12 ~~v~C~~~-~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQES-KVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEEST-TCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCC-CCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 45666666 554 667666 368999999999999 555 468899999999999999977666 46788988776 66
Q ss_pred cccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeC-CCCCCCCchhhhCCC-CCcEeecCCCCC
Q 044868 226 LSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN-NKLTGNFPKGLAKLQ-SLQYFLMDDNPM 303 (463)
Q Consensus 226 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~L~~n~l 303 (463)
+.+|+++...|..|..+++|++|++++|++++..+..+....++..|++.+ +.+....+..+..+. .++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 677999977788899999999999999999977666777778889999976 466644445566654 689999999999
Q ss_pred CCCCchhhhCCCCCCEEeccC-CCCCCCCc-cccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCC
Q 044868 304 FIPLPVEFGILVKLQELRLAN-SGYSGSIP-PSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPF 381 (463)
Q Consensus 304 ~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 381 (463)
....+..+ ...+|++|++++ |.++ .+| ..|..+++|++|+|++|+++ .+|.. .+.+|+.|.+.++.--..+|
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP- 240 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP- 240 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-
T ss_pred cCCChhhc-cccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-
Confidence 76544444 567899999986 5565 555 57899999999999999999 55542 35567777776654444666
Q ss_pred CchhhhccCCeEeccCCCCCCCCccc
Q 044868 382 NSSFLKRLGRNLDLSGNPGLCLNPAE 407 (463)
Q Consensus 382 ~~~~l~~L~~~L~L~~N~~~c~~~~~ 407 (463)
.+..+++| +.+++. |++.|.+...
T Consensus 241 ~l~~l~~L-~~l~l~-~~~~c~~~~~ 264 (350)
T 4ay9_X 241 TLEKLVAL-MEASLT-YPSHCCAFAN 264 (350)
T ss_dssp CTTTCCSC-CEEECS-CHHHHHHHHH
T ss_pred CchhCcCh-hhCcCC-CCccccchhh
Confidence 36778888 899986 5566644433
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=3.9e-23 Score=217.92 Aligned_cols=301 Identities=13% Similarity=0.046 Sum_probs=188.9
Q ss_pred EEEEECCCCCCCCCCccccccccccCCCCCCEEEcccCCCCCccc--ccccccccCCCCccEEEccCCCCCCC----CCc
Q 044868 91 VTRLDFGTRPNPTCKKTATFPYQIFSLSYLQSVFFFSCFTHTKTT--LSVSADRLYNSSLQQLSLRSNPALVG----PIP 164 (463)
Q Consensus 91 v~~l~L~~~~~~~~~~~g~l~~~l~~l~~L~~L~L~~~~~~~~~~--ip~~~~~l~~~~L~~L~Ls~n~~l~~----~~p 164 (463)
++.|+|++... .....++....++++|++|++++|.+...+. ++.....++. |++|++++| .+.+ .++
T Consensus 140 L~~L~L~~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~--L~~L~L~~n-~~~~~~~~~l~ 213 (592)
T 3ogk_B 140 LETLKLDKCSG---FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS--LEVLNFYMT-EFAKISPKDLE 213 (592)
T ss_dssp CCEEEEESCEE---EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC--CCEEECTTC-CCSSCCHHHHH
T ss_pred CcEEECcCCCC---cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC--ccEEEeecc-CCCccCHHHHH
Confidence 77777753210 0011233333467788888887775421111 3334445555 777777777 5552 233
Q ss_pred hhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEc---------------------------ccCCCCCCCchhcCC
Q 044868 165 PQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDL---------------------------SYNLLAGTIPVQVGN 217 (463)
Q Consensus 165 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L---------------------------s~n~l~~~~p~~l~~ 217 (463)
..+.++++|++|++++|.+.+ +|..+.++++|++|++ +++. .+.+|..+..
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~ 291 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPF 291 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGG
T ss_pred HHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhh
Confidence 344566777777777766552 4444444455555554 4432 2245666666
Q ss_pred CCCCCEEEcccCcCCCCCc-hhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeC-----------CCCCCC-Cc
Q 044868 218 LRNLVGLDLSYNSLTGSIP-STIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSN-----------NKLTGN-FP 284 (463)
Q Consensus 218 l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-----------n~l~~~-~p 284 (463)
+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ |.+++. ++
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 7778888887777654332 3356777888888773322222334445678888888883 455532 22
Q ss_pred hhhhCCCCCcEeecCCCCCCCCCchhhhC-CCCCCEEecc----CCCCCCC-----CccccCCCCcccEEEccccc--CC
Q 044868 285 KGLAKLQSLQYFLMDDNPMFIPLPVEFGI-LVKLQELRLA----NSGYSGS-----IPPSFSQLNNLSTLSLQNNR--LT 352 (463)
Q Consensus 285 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~p~~l~~l~~L~~L~Ls~N~--l~ 352 (463)
.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|++|++++|. ++
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 23456888999999888887776666665 8899999996 6677753 33345678999999998543 77
Q ss_pred CCchhhhC-CCCCCCeEEccCCCCCcc-CCCCchhhhccCCeEeccCCCC
Q 044868 353 GEIPVVFG-SLSHIYHLNLSRNFLDGV-VPFNSSFLKRLGRNLDLSGNPG 400 (463)
Q Consensus 353 ~~~p~~l~-~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~~L~L~~N~~ 400 (463)
+..+..+. .+++|++|++++|++++. ++..+..+++| +.|++++|++
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L-~~L~l~~n~l 500 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL-QKLEMRGCCF 500 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTC-CEEEEESCCC
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCccc-CeeeccCCCC
Confidence 66555554 488999999999999863 23334456788 9999999995
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.3e-21 Score=193.98 Aligned_cols=163 Identities=23% Similarity=0.206 Sum_probs=89.1
Q ss_pred cCEEeccCCCCCCCCchhhh-cCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEecc
Q 044868 245 LQKLDLSSNSLTGSIPDSID-KLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLA 323 (463)
Q Consensus 245 L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 323 (463)
++.|+|++|++++..+..+. ++++|++|++++|++++..+..+.++++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 34444444444433333333 44444444444444444333444555555555555555544444455555666666666
Q ss_pred CCCCCCCCccccCCCCcccEEEcccccCCCCchhhh---CCCCCCCeEEccCCCCCccCCCCchhhhc--cCCeEeccCC
Q 044868 324 NSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVF---GSLSHIYHLNLSRNFLDGVVPFNSSFLKR--LGRNLDLSGN 398 (463)
Q Consensus 324 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~~L~L~~N 398 (463)
+|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|+|++..+..+..++. + +.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l-~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK-NGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH-TTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc-ceEEecCC
Confidence 666665555666666666666666666664333333 45677777777777777544444444443 3 56788888
Q ss_pred CCCCCCcccc
Q 044868 399 PGLCLNPAEA 408 (463)
Q Consensus 399 ~~~c~~~~~~ 408 (463)
||.|+|...+
T Consensus 200 ~~~C~C~l~~ 209 (361)
T 2xot_A 200 PLECDCKLYQ 209 (361)
T ss_dssp CEECCHHHHH
T ss_pred CccCCcCcHH
Confidence 8888876543
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=176.83 Aligned_cols=160 Identities=26% Similarity=0.227 Sum_probs=105.7
Q ss_pred CEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCc-hhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccC
Q 044868 246 QKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFP-KGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLAN 324 (463)
Q Consensus 246 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 324 (463)
+.+++++|.++ .+|..+ .+.+++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 34555555554 244333 2234566666666654433 2356666666666666666666666666677777777777
Q ss_pred CCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCC
Q 044868 325 SGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLN 404 (463)
Q Consensus 325 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~ 404 (463)
|.+++..+..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..++.+ +.|++++|+|.|+|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL-STLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTC-CEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCC-CEEEecCcCCcCCC
Confidence 77776666667777777777777777776667777777777777777777777777777777777 77788888888877
Q ss_pred ccccc
Q 044868 405 PAEAY 409 (463)
Q Consensus 405 ~~~~~ 409 (463)
+..|+
T Consensus 170 ~l~~l 174 (220)
T 2v70_A 170 YLAWL 174 (220)
T ss_dssp GGHHH
T ss_pred chHHH
Confidence 76664
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.84 E-value=3.7e-22 Score=214.97 Aligned_cols=262 Identities=22% Similarity=0.244 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHhCC-----CCCCCCCCCCCCCCCCCCccceEeCCCCCCcccEEEEECCCCCCCCCCcccccccccc
Q 044868 41 MLPSEAETLFKIMDSMS-----SDQSWRVSYSNPCKPGSSWPGIECKQGNDGYLHVTRLDFGTRPNPTCKKTATFPYQIF 115 (463)
Q Consensus 41 ~~~~~~~aLl~~~~~~~-----~~~~W~~~~~~~C~~~~~w~gv~C~~~~~~~~~v~~l~L~~~~~~~~~~~g~l~~~l~ 115 (463)
..+.++++|++++.+.. ....|.......+ .|.++.++.. ++++++|.... .. .++..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~-----~~~~l~L~~n~-----~~-~~~~~-- 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG----TATNSAVSTP-----LTPKIELFANG-----KD-EANQA-- 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccc----cCCCceecCC-----ccceEEeeCCC-----CC-cchhh--
Confidence 44567889999987652 2234543322333 4988888753 78888885321 11 12222
Q ss_pred CCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCC
Q 044868 116 SLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLN 195 (463)
Q Consensus 116 ~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 195 (463)
.|+.++|+.+. +..++++.| .+. ..|..+..+++|++|+|++|.+. .+|..+++++
T Consensus 192 ---~l~~l~Ls~~~------------------i~~~~~~~n-~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 192 ---LLQHKKLSQYS------------------IDEDDDIEN-RMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred ---HhhcCccCccc------------------ccCcccccc-cee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 23344444432 444444444 333 44556777777777777777776 6666666777
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEee
Q 044868 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALS 275 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 275 (463)
+|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..++.+++|++|+|++|.++ .+|..|+++++|++|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 7777777777777 66777777777777777777777 56777777777777777777776 566667777777777777
Q ss_pred CCCCCCCCchhhhCCCC-CcEeecCCCCCCCCCchhhhCCCCCCEEeccCC--------CCCCCCccccCCCCcccEEEc
Q 044868 276 NNKLTGNFPKGLAKLQS-LQYFLMDDNPMFIPLPVEFGILVKLQELRLANS--------GYSGSIPPSFSQLNNLSTLSL 346 (463)
Q Consensus 276 ~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L 346 (463)
+|.+++.+|..+..+.. +..++|++|.+.+.+|. .|+.|+++.| .+.+..+..+..+..++...+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~l 398 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVL 398 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------------------------------------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeee
Confidence 77777666666554321 22356667777666654 3444555554 222222233334444445555
Q ss_pred ccccCC
Q 044868 347 QNNRLT 352 (463)
Q Consensus 347 s~N~l~ 352 (463)
++|-+.
T Consensus 399 s~Nil~ 404 (727)
T 4b8c_D 399 SYNTLC 404 (727)
T ss_dssp ---CCC
T ss_pred eccccc
Confidence 555543
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=4.6e-20 Score=170.85 Aligned_cols=156 Identities=26% Similarity=0.272 Sum_probs=118.5
Q ss_pred cCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccC
Q 044868 245 LQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLAN 324 (463)
Q Consensus 245 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 324 (463)
-+.++.++++++ .+|..+ .++|++|++++|.+++..|..+..+++|++|+|++|.+....+..+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 455666666665 445433 26677777777777766666777777777777777777666566677788888888888
Q ss_pred CCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCC
Q 044868 325 SGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLN 404 (463)
Q Consensus 325 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~ 404 (463)
|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..++.+ +.|++++|++.|.|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL-THAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC-CEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC-CEEEeeCCCccCCc
Confidence 8888666666778888888888888888 777778888888888888888887777777778888 88899999999888
Q ss_pred c
Q 044868 405 P 405 (463)
Q Consensus 405 ~ 405 (463)
.
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 6
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=4.5e-20 Score=177.29 Aligned_cols=189 Identities=24% Similarity=0.333 Sum_probs=132.9
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
+..+.+..+ .+.+.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 26 ~~~~~l~~~-~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKK-SVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCS-CTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCC-Cccccc--chhhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 333445444 343332 2346788888888888887 444 47778888888888888885433 7888888888888
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL 307 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 307 (463)
+|.+++ ++ .+..+++|++|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..
T Consensus 99 ~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 888874 33 477888888888888888753 4577778888888888887753 45777777777777777776654
Q ss_pred chhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCC
Q 044868 308 PVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTG 353 (463)
Q Consensus 308 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 353 (463)
+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 4 6677777777777777764 33 36667777777777777763
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=5.5e-20 Score=176.68 Aligned_cols=166 Identities=23% Similarity=0.288 Sum_probs=89.9
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|++++| .+... + .+..+++|++|++++|++++. +. +.++++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 48 L~~L~l~~~-~i~~~-~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 48 IDQIIANNS-DIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp CCEEECTTS-CCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred ccEEEccCC-CcccC-h-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 566666555 44322 2 255555666666666665532 22 5555666666666665553 22 25555666666666
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPL 307 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 307 (463)
+|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l- 193 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 193 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-
Confidence 6655532 3455555666666666655543 345555666666666665554322 55555666666666655442
Q ss_pred chhhhCCCCCCEEeccCCCCC
Q 044868 308 PVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 308 ~~~l~~l~~L~~L~L~~n~l~ 328 (463)
+ .+..+++|+.|++++|.++
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEE
T ss_pred h-hhccCCCCCEEECcCCccc
Confidence 2 2555556666666666555
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=2.1e-20 Score=196.76 Aligned_cols=170 Identities=27% Similarity=0.353 Sum_probs=76.6
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEE
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKL 248 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 248 (463)
.+++|+.|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..+++|++|
T Consensus 41 ~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 3444444444444443 222 24444444444444444443222 4444444444444444442 12 34444444444
Q ss_pred eccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCC
Q 044868 249 DLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 249 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 328 (463)
+|++|++++ + ..+..+++|+.|+|++|.+++. ..+..+++|++|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 444444443 1 2244444455555555544432 334444455555555554444333 444455555555555544
Q ss_pred CCCccccCCCCcccEEEcccccCC
Q 044868 329 GSIPPSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 329 ~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (463)
+. ..+..+++|+.|+|++|+++
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEE
T ss_pred CC--hHHccCCCCCEEEccCCcCc
Confidence 32 23444455555555555544
No 107
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.2e-21 Score=206.55 Aligned_cols=205 Identities=14% Similarity=0.059 Sum_probs=137.8
Q ss_pred CCCCCcEEEcccCCCCCCC-chhcCCCCCCCEEEcccCcCCCC-CchhhcCCCCcCEEeccC---------CCCCCCCch
Q 044868 193 SLNSLVHLDLSYNLLAGTI-PVQVGNLRNLVGLDLSYNSLTGS-IPSTIGQLGMLQKLDLSS---------NSLTGSIPD 261 (463)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~---------n~l~~~~p~ 261 (463)
.+++|++|++++|.+++.. ...+..+++|++|++++| +... ++.....+++|++|++++ +.+++....
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 4567777777777755432 223456777777777776 3211 222223467788887733 344433222
Q ss_pred hhh-cCCCCCEEEeeCCCCCCCCchhhh-CCCCCcEeecC--C----CCCCCC-----CchhhhCCCCCCEEeccCCCCC
Q 044868 262 SID-KLSLLAFMALSNNKLTGNFPKGLA-KLQSLQYFLMD--D----NPMFIP-----LPVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 262 ~l~-~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~ 328 (463)
.+. .+++|++|.+..|.+++.....+. .+++|++|+++ + +.+++. ++..+..+++|++|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 332 478888888888888765555554 58899999998 4 445422 122356788999999977 666
Q ss_pred CCCccccCC-CCcccEEEcccccCCCCchhhh-CCCCCCCeEEccCCCCCccCCC-CchhhhccCCeEeccCCCC
Q 044868 329 GSIPPSFSQ-LNNLSTLSLQNNRLTGEIPVVF-GSLSHIYHLNLSRNFLDGVVPF-NSSFLKRLGRNLDLSGNPG 400 (463)
Q Consensus 329 ~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~~L~L~~N~~ 400 (463)
+..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++| +.|++++|+.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L-~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM-RSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS-SEEEEESSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC-CEEeeeCCCC
Confidence 555555544 7899999999999987655555 6689999999999999654432 34457888 9999999986
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.9e-19 Score=165.47 Aligned_cols=133 Identities=30% Similarity=0.266 Sum_probs=97.7
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|+|++| .+.+..|..|.++++|++|+|++|+++...+..+.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus 42 L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 42 AQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp CSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 777777777 7777777778888888888888888874444456778888888888888876555666777777777777
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGN 282 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 282 (463)
+|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 121 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 121 CNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 77777 5666777777777777777777755555666677777777777766643
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=3.3e-20 Score=195.30 Aligned_cols=199 Identities=22% Similarity=0.262 Sum_probs=167.6
Q ss_pred CCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEe
Q 044868 170 LKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLD 249 (463)
Q Consensus 170 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 249 (463)
+..+..+.+..+.+....+ +..+++|++|++++|.+. .++ .+..+++|++|+|++|++++..+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3445556666677664332 457889999999999998 444 58899999999999999996544 88999999999
Q ss_pred ccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCC
Q 044868 250 LSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSG 329 (463)
Q Consensus 250 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 329 (463)
|++|.+++ ++ .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 99999985 34 68999999999999999985 4 4699999999999999999876 578999999999999999997
Q ss_pred CCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCch
Q 044868 330 SIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSS 384 (463)
Q Consensus 330 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 384 (463)
..| +..+++|+.|+|++|++++ ++ .+..+++|+.|+|++|++++.....+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred chh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCcccccc
Confidence 666 8899999999999999995 44 588999999999999999876444333
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=165.92 Aligned_cols=155 Identities=26% Similarity=0.245 Sum_probs=105.2
Q ss_pred EEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCc-hhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCC
Q 044868 223 GLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIP-DSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDN 301 (463)
Q Consensus 223 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 301 (463)
++++++|.++ .+|..+. ..+++|++++|++++..+ ..+..+++|++|++++|.+++..+..+.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4455555444 2343332 234556666666554433 33556666666666666666555556667777777777777
Q ss_pred CCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCC
Q 044868 302 PMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 302 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 380 (463)
.+.+..+..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+++|++|++++|.+++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7776666667777777788888888877777777788888888888888887777788888888888888888876554
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.1e-19 Score=165.41 Aligned_cols=135 Identities=24% Similarity=0.266 Sum_probs=82.3
Q ss_pred CcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEecc
Q 044868 244 MLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLA 323 (463)
Q Consensus 244 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 323 (463)
+|++|++++|++++..+..+..+++|++|++++|.+++..|..+.++++|++|+|++|.+....+..+..+++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44555555555544333444555555555555555554445555555555666666665555444455666666666677
Q ss_pred CCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 324 NSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 324 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
+|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|.+...
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 7766666666666777777777777777765555666777777777777777643
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1e-19 Score=180.33 Aligned_cols=176 Identities=26% Similarity=0.196 Sum_probs=130.9
Q ss_pred cEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcC-CCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccC
Q 044868 174 QILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVG-NLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSS 252 (463)
Q Consensus 174 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 252 (463)
+++++++++++ .+|..+. ..+++|+|++|++++..+..+. ++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 5776554 3578888888888866666666 788888888888888866667788888888888888
Q ss_pred CCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhh---hCCCCCCEEeccCCCCCC
Q 044868 253 NSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEF---GILVKLQELRLANSGYSG 329 (463)
Q Consensus 253 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~ 329 (463)
|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|.+.+..+..+ ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 88886666677788888888888888887667777788888888888887776555444 456777777777777775
Q ss_pred CCccccCCCCc--ccEEEcccccCC
Q 044868 330 SIPPSFSQLNN--LSTLSLQNNRLT 352 (463)
Q Consensus 330 ~~p~~l~~l~~--L~~L~Ls~N~l~ 352 (463)
..+..+..++. ++.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54455656655 366777777765
No 113
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.1e-21 Score=206.76 Aligned_cols=300 Identities=16% Similarity=0.098 Sum_probs=166.3
Q ss_pred cEEEEECCCCCCCCCCcccccccccc-CCCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhc-
Q 044868 90 HVTRLDFGTRPNPTCKKTATFPYQIF-SLSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQI- 167 (463)
Q Consensus 90 ~v~~l~L~~~~~~~~~~~g~l~~~l~-~l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l- 167 (463)
++++|+|++ +.+.+..+..+. .+++|++|++++|.......++..+..+++ |++|++++| .+.+..+..+
T Consensus 106 ~L~~L~L~~-----~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~--L~~L~L~~~-~i~~~~~~~l~ 177 (594)
T 2p1m_B 106 WLEEIRLKR-----MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN--LKELDLRES-DVDDVSGHWLS 177 (594)
T ss_dssp TCCEEEEES-----CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT--CCEEECTTC-EEECCCGGGGG
T ss_pred CCCeEEeeC-----cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC--CCEEeCcCC-ccCCcchHHHH
Confidence 577777763 234444455554 578888888887732112224444556766 888888888 5655444333
Q ss_pred ---CCCCCCcEEEeecCC--CCCC-CccccCCCCCCcEEEcccCCCCCCCchhcCCCC----------------------
Q 044868 168 ---SSLKFLQILTLSQNR--LNGQ-IPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLR---------------------- 219 (463)
Q Consensus 168 ---~~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~---------------------- 219 (463)
..+++|++|++++|. +... ++..+.++++|++|++++|...+.++..+..++
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 356688888888776 2211 111123457777777777622112333333344
Q ss_pred --------------------------------CCCEEEcccCcCCCCC-chhhcCCCCcCEEeccCCCCCCC-Cchhhhc
Q 044868 220 --------------------------------NLVGLDLSYNSLTGSI-PSTIGQLGMLQKLDLSSNSLTGS-IPDSIDK 265 (463)
Q Consensus 220 --------------------------------~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~ 265 (463)
+|++|++++|.+++.. ...+..+++|++|++++| +++. ++.....
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~ 336 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST 336 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence 4444444444433211 111234444444444444 2111 1111223
Q ss_pred CCCCCEEEeeC---------CCCCCCCchhh-hCCCCCcEeecCCCCCCCCCchhhh-CCCCCCEEecc--C----CCCC
Q 044868 266 LSLLAFMALSN---------NKLTGNFPKGL-AKLQSLQYFLMDDNPMFIPLPVEFG-ILVKLQELRLA--N----SGYS 328 (463)
Q Consensus 266 l~~L~~L~L~~---------n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~ 328 (463)
+++|++|++.+ +.+++.....+ ..+++|++|.+..|.+++.....+. .+++|++|+++ + +.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 45555555522 22322111122 2356666666666666554444443 47788888887 3 4444
Q ss_pred CC-----CccccCCCCcccEEEcccccCCCCchhhhCC-CCCCCeEEccCCCCCccCCCCc-hhhhccCCeEeccCCCC
Q 044868 329 GS-----IPPSFSQLNNLSTLSLQNNRLTGEIPVVFGS-LSHIYHLNLSRNFLDGVVPFNS-SFLKRLGRNLDLSGNPG 400 (463)
Q Consensus 329 ~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~~L~L~~N~~ 400 (463)
+. ++..+..+++|++|++++ .+++..+..+.. +++|++|+|++|.+++.....+ ..+++| +.|++++|++
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L-~~L~L~~n~~ 493 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL-RKLEIRDCPF 493 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC-CEEEEESCSC
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc-CEEECcCCCC
Confidence 21 112245677888888876 666555555555 7899999999999876544333 457888 9999999997
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=5.6e-19 Score=159.55 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=51.2
Q ss_pred CCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCE
Q 044868 168 SSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQK 247 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 247 (463)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34555566666666555 444 3555555555555555443 1223444555555555555544434444444444444
Q ss_pred EeccCCCCCCCCchhhhcCCCCCEEEeeCCC
Q 044868 248 LDLSSNSLTGSIPDSIDKLSLLAFMALSNNK 278 (463)
Q Consensus 248 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 278 (463)
|++++|++++..+..+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 4444444443334444444444444444443
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=6.5e-22 Score=206.99 Aligned_cols=122 Identities=27% Similarity=0.335 Sum_probs=83.0
Q ss_pred CcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEecc
Q 044868 244 MLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLA 323 (463)
Q Consensus 244 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 323 (463)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|++|+|++|.+++ +| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 46667777777764 454 667777777777777776 666677777777777777777765 45 66777777777777
Q ss_pred CCCCCCCC-ccccCCCCcccEEEcccccCCCCchh---hhCCCCCCCeEEc
Q 044868 324 NSGYSGSI-PPSFSQLNNLSTLSLQNNRLTGEIPV---VFGSLSHIYHLNL 370 (463)
Q Consensus 324 ~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~L 370 (463)
+|++++.. |..+..+++|++|+|++|++++..|. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777665 77777777777777777777754432 2233677777754
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=7.9e-19 Score=158.56 Aligned_cols=147 Identities=19% Similarity=0.238 Sum_probs=78.4
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|++|++++| .+. .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 46 L~~L~l~~n-~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 46 LTYITLANI-NVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp CCEEEEESS-CCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred ccEEeccCC-Ccc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 666666655 444 334 3555566666666666443 2 2245555666666666666555455555556666666666
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCC-CCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCC
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNS-LTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPM 303 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 303 (463)
+|++++..+..++.+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666655555555556666666666665 33 333 35555555555555555543 22 344445555555555444
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=1.8e-18 Score=155.56 Aligned_cols=134 Identities=24% Similarity=0.314 Sum_probs=75.3
Q ss_pred EEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCch-hhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccc
Q 044868 271 FMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPV-EFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNN 349 (463)
Q Consensus 271 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 349 (463)
++++++|.++ .+|..+.. +|++|++++|.+.+..+. .++.+++|++|+|++|++++..|..+..+++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4444444443 33332222 455555555555444432 2555555666666666665555555666666666666666
Q ss_pred cCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcccc
Q 044868 350 RLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEA 408 (463)
Q Consensus 350 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~ 408 (463)
++++..+..+..+++|++|+|++|++++..|..+..++.+ ++|++++|++.|+|+..|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL-TSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTC-CEEECTTCCBCCSGGGHH
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCC-CEEEeCCCCccCcCcchH
Confidence 6665555555566666666666666666666666666666 666666666666666554
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=4e-22 Score=208.64 Aligned_cols=204 Identities=19% Similarity=0.159 Sum_probs=147.5
Q ss_pred CCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCC-------------CCCCCchhcCCCCCCCEEE-cccCcCCC
Q 044868 168 SSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNL-------------LAGTIPVQVGNLRNLVGLD-LSYNSLTG 233 (463)
Q Consensus 168 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~ 233 (463)
...++|+.|+|++|+++ .+|..++++++|++|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45666666777776665 666666666666666665543 2233334444444444444 332221
Q ss_pred CCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhC
Q 044868 234 SIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGI 313 (463)
Q Consensus 234 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 313 (463)
.+|+.+.+++|.++. ++ ...|+.|++++|.+++ +|. ++.+++|++|+|++|.+. .+|..++.
T Consensus 423 ---------~~L~~l~l~~n~i~~-l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLK-ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHHH-HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------chhhhhhhhcccccc-cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 123333344444432 11 1359999999999995 676 999999999999999998 77889999
Q ss_pred CCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCc-hhhhCCCCCCCeEEccCCCCCccCCCCc---hhhhcc
Q 044868 314 LVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEI-PVVFGSLSHIYHLNLSRNFLDGVVPFNS---SFLKRL 389 (463)
Q Consensus 314 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L 389 (463)
+++|++|+|++|.+++ +| .++.+++|++|+|++|++++.. |..+..+++|+.|+|++|++++.+|... ..++.|
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L 562 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTC
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCccc
Confidence 9999999999999996 67 8999999999999999999876 9999999999999999999998876432 235677
Q ss_pred CCeEec
Q 044868 390 GRNLDL 395 (463)
Q Consensus 390 ~~~L~L 395 (463)
+.|++
T Consensus 563 -~~L~l 567 (567)
T 1dce_A 563 -SSILT 567 (567)
T ss_dssp -SEEEC
T ss_pred -CccCC
Confidence 77754
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=4.6e-19 Score=167.64 Aligned_cols=149 Identities=21% Similarity=0.335 Sum_probs=71.3
Q ss_pred CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEE
Q 044868 193 SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFM 272 (463)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 272 (463)
.+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++ +|. +.. ++|++|
T Consensus 39 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRL 111 (263)
T ss_dssp HHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEE
T ss_pred hcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEE
Confidence 3444444444444443 222 33444444444444444442221 4444444444444444442 221 111 455555
Q ss_pred EeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCC
Q 044868 273 ALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 273 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (463)
++++|.+++ ++ .+..+++|++|++++|.+++. + .+..+++|++|++++|++++. ..+..+++|++|++++|+++
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 555555543 22 355555555555555555443 2 355555666666666666544 44555666666666666665
Q ss_pred CC
Q 044868 353 GE 354 (463)
Q Consensus 353 ~~ 354 (463)
+.
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.77 E-value=1.2e-19 Score=195.46 Aligned_cols=190 Identities=23% Similarity=0.214 Sum_probs=127.9
Q ss_pred EeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCC
Q 044868 177 TLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLT 256 (463)
Q Consensus 177 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 256 (463)
++..|.+. ..+..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 44555555 56778889999999999999998 78888889999999999999999 88999999999999999999999
Q ss_pred CCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCC-CCEEeccCCCCCCCCcccc
Q 044868 257 GSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVK-LQELRLANSGYSGSIPPSF 335 (463)
Q Consensus 257 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~l 335 (463)
.+|..++++++|++|+|++|.++ .+|..|+++++|++|+|++|.+.+.+|..+..+.. +..++|++|.+++.+|..
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~- 360 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE- 360 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence 78999999999999999999997 78888999999999999999999999988765422 234789999999888764
Q ss_pred CCCCcccEEEcccc--------cCCCCchhhhCCCCCCCeEEccCCCCCc
Q 044868 336 SQLNNLSTLSLQNN--------RLTGEIPVVFGSLSHIYHLNLSRNFLDG 377 (463)
Q Consensus 336 ~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 377 (463)
|+.|++++| .+.+..+..+..+..+....+++|.+.+
T Consensus 361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ----------------------------------------------CCCG
T ss_pred -----cceeEeecccccccccCCccccccchhhcccccceeeeecccccc
Confidence 456667766 3444444455667777888888888864
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=5.4e-19 Score=167.15 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=140.5
Q ss_pred CCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEE
Q 044868 193 SLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFM 272 (463)
Q Consensus 193 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 272 (463)
++.+++.+++++|.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 35567777888888874 34 5678899999999999988 455 68889999999999999986544 8899999999
Q ss_pred EeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCC
Q 044868 273 ALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLT 352 (463)
Q Consensus 273 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 352 (463)
++++|++++ +|. +.. ++|++|++++|.+.+. ..+..+++|++|++++|++++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 999999985 443 333 8999999999999774 3588899999999999999864 3 6788899999999999998
Q ss_pred CCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 353 GEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 353 ~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
+. ..+..+++|+.|++++|++++.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 65 6688889999999999998865
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=153.83 Aligned_cols=138 Identities=28% Similarity=0.299 Sum_probs=105.9
Q ss_pred CEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccc
Q 044868 270 AFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNN 349 (463)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 349 (463)
+.+++++|.++ .+|..+. ++|++|++++|.+. .+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45566666655 4444332 46777777777775 45567777788888888888888776777888888888888888
Q ss_pred cCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcccccccc
Q 044868 350 RLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAYSVK 412 (463)
Q Consensus 350 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~~~~ 412 (463)
++++..|..+..+++|++|+|++|+|++..+..+..++.+ +.|++++|+|.|+|...|+..+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~~~C~c~l~~l~~~ 150 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL-SHLAIGANPLYCDCNMQWLSDW 150 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC-CEEECCSSCEECSGGGHHHHHH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc-cEEEeCCCCeecCCcCHHHHHH
Confidence 8887777788888899999999999987766677788888 8999999999999998875543
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=8e-18 Score=151.32 Aligned_cols=112 Identities=23% Similarity=0.253 Sum_probs=56.1
Q ss_pred CCCEEEeeCCCCCCCCch-hhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEc
Q 044868 268 LLAFMALSNNKLTGNFPK-GLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSL 346 (463)
Q Consensus 268 ~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 346 (463)
++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444444444444433222 2444444455555555444444444555555555555555555444444555555555555
Q ss_pred ccccCCCCchhhhCCCCCCCeEEccCCCCCccC
Q 044868 347 QNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVV 379 (463)
Q Consensus 347 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 379 (463)
++|++++..|..+..+++|++|++++|.+++..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 555555555555555555555555555555443
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=8.2e-17 Score=141.24 Aligned_cols=133 Identities=23% Similarity=0.227 Sum_probs=84.4
Q ss_pred CCcCEEeccCCCCC-CCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEe
Q 044868 243 GMLQKLDLSSNSLT-GSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELR 321 (463)
Q Consensus 243 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 321 (463)
++|++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45566666666555 45555555566666666666666543 4555666666666666666665666666666777777
Q ss_pred ccCCCCCCCC-ccccCCCCcccEEEcccccCCCCch---hhhCCCCCCCeEEccCCCCCc
Q 044868 322 LANSGYSGSI-PPSFSQLNNLSTLSLQNNRLTGEIP---VVFGSLSHIYHLNLSRNFLDG 377 (463)
Q Consensus 322 L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~L~L~~N~l~~ 377 (463)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7777666432 2566677777777777777774444 366777777777777777663
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=1e-16 Score=140.68 Aligned_cols=88 Identities=27% Similarity=0.241 Sum_probs=33.7
Q ss_pred cCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCC-chhhhCCCCCcEeecCCCCCCCCCc---hhhhCCC
Q 044868 240 GQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNF-PKGLAKLQSLQYFLMDDNPMFIPLP---VEFGILV 315 (463)
Q Consensus 240 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~ 315 (463)
..+++|++|++++|++++.+|..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..++
T Consensus 68 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 147 (168)
T 2ell_A 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP 147 (168)
T ss_dssp CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence 33334444444444443333333333444444444444443211 1233334444444444444333322 2333344
Q ss_pred CCCEEeccCCCC
Q 044868 316 KLQELRLANSGY 327 (463)
Q Consensus 316 ~L~~L~L~~n~l 327 (463)
+|++|++++|.+
T Consensus 148 ~L~~L~l~~n~~ 159 (168)
T 2ell_A 148 QLTYLDGYDRED 159 (168)
T ss_dssp SCCEETTEETTS
T ss_pred cCcEecCCCCCh
Confidence 444444444433
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=9.8e-17 Score=137.83 Aligned_cols=107 Identities=24% Similarity=0.264 Sum_probs=44.6
Q ss_pred CCcEEEeecCCCC-CCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEec
Q 044868 172 FLQILTLSQNRLN-GQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDL 250 (463)
Q Consensus 172 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 250 (463)
+|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444443 33444334444444444444444422 33344444444444444444333433333444444444
Q ss_pred cCCCCCCC-CchhhhcCCCCCEEEeeCCCCC
Q 044868 251 SSNSLTGS-IPDSIDKLSLLAFMALSNNKLT 280 (463)
Q Consensus 251 ~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 280 (463)
++|.+++. .+..+..+++|++|++++|.++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 44444421 1233444444444444444444
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=3.3e-16 Score=138.65 Aligned_cols=132 Identities=25% Similarity=0.282 Sum_probs=80.8
Q ss_pred CEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccc
Q 044868 270 AFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNN 349 (463)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 349 (463)
+.+++++++++ .+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34555555544 233222 245566666666665555555566666666666666666554555666667777777777
Q ss_pred cCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 350 RLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 350 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
++++..+..+..+++|++|++++|++++..+..+..++.+ +.|++++|++.|.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL-QKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC-CEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc-CEEEecCCCeeccCc
Confidence 7765555556666777777777777775555555566666 677777777777765
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.5e-16 Score=136.62 Aligned_cols=128 Identities=23% Similarity=0.200 Sum_probs=81.7
Q ss_pred CCCCcEEEcccCCCC-CCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEE
Q 044868 194 LNSLVHLDLSYNLLA-GTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFM 272 (463)
Q Consensus 194 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 272 (463)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 56666666777777777777777644 556666677777777777766566666666666777
Q ss_pred EeeCCCCCCC-CchhhhCCCCCcEeecCCCCCCCCCc---hhhhCCCCCCEEecc
Q 044868 273 ALSNNKLTGN-FPKGLAKLQSLQYFLMDDNPMFIPLP---VEFGILVKLQELRLA 323 (463)
Q Consensus 273 ~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~ 323 (463)
++++|.+++. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7666666642 22556666666666666666655544 345555666666554
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.1e-17 Score=158.67 Aligned_cols=273 Identities=10% Similarity=-0.014 Sum_probs=166.4
Q ss_pred cccccccccC--CCCCCEEEcccCCCCCcccccccccc-cCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCC
Q 044868 107 TATFPYQIFS--LSYLQSVFFFSCFTHTKTTLSVSADR-LYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRL 183 (463)
Q Consensus 107 ~g~l~~~l~~--l~~L~~L~L~~~~~~~~~~ip~~~~~-l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l 183 (463)
.|.++..+.. +.+++.|.++++.. ...+ ..+.. +++ |++|||++| .+... ...-+.++.++.+.+..|.+
T Consensus 12 ~g~l~~~l~~~~~~~l~~L~l~g~i~--~~~~-~~l~~~l~~--L~~LdLs~n-~i~~~-~~~~~~~~~~~~~~~~~~~I 84 (329)
T 3sb4_A 12 PGTLISMMTEEEANSITHLTLTGKLN--AEDF-RHLRDEFPS--LKVLDISNA-EIKMY-SGKAGTYPNGKFYIYMANFV 84 (329)
T ss_dssp TTCGGGGSCHHHHHHCSEEEEEEEEC--HHHH-HHHHHSCTT--CCEEEEEEE-EECCE-EESSSSSGGGCCEEECTTEE
T ss_pred CCcHHhhccchhhCceeEEEEecccc--HHHH-HHHHHhhcc--CeEEecCcc-eeEEe-cCcccccccccccccccccc
Confidence 4555555543 77899999987421 1111 12223 555 999999999 65510 00011222234444444432
Q ss_pred CCCCccccCC--------CCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCC-
Q 044868 184 NGQIPVKIFS--------LNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNS- 254 (463)
Q Consensus 184 ~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~- 254 (463)
. +..|.+ +++|++|+|.+ .++..-+..|.++++|+.|++..|.+....+..|..+.++..+....+.
T Consensus 85 ~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~ 160 (329)
T 3sb4_A 85 P---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA 160 (329)
T ss_dssp C---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH
T ss_pred C---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh
Confidence 2 223445 77777777777 6664445567777777777777777765555666666666666554421
Q ss_pred ---CCCCCchhhhcCCC--------------------------CCEEEeeCCCCCCCCchhh-hCCCCCcEeecCCCCCC
Q 044868 255 ---LTGSIPDSIDKLSL--------------------------LAFMALSNNKLTGNFPKGL-AKLQSLQYFLMDDNPMF 304 (463)
Q Consensus 255 ---l~~~~p~~l~~l~~--------------------------L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~ 304 (463)
........+.++.. ++.+.+.++-.. .....+ ..+++|++++|++|.+.
T Consensus 161 ~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 161 YRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT 239 (329)
T ss_dssp HHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC
T ss_pred hhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc
Confidence 11111122333333 334444333111 111111 23678888888888887
Q ss_pred CCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCccc-EEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCc
Q 044868 305 IPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLS-TLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNS 383 (463)
Q Consensus 305 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 383 (463)
...+..|.++++|+++++.+| +....+.+|.++++|+ .+++.+ +++...+..|.++++|+.+++++|+++...+..|
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 777777888888888888887 6655666788888888 888887 6765556778888888888888888887777777
Q ss_pred hhhhccCCeEe
Q 044868 384 SFLKRLGRNLD 394 (463)
Q Consensus 384 ~~l~~L~~~L~ 394 (463)
..+++| +.++
T Consensus 318 ~~~~~L-~~ly 327 (329)
T 3sb4_A 318 GNGVPS-KLIY 327 (329)
T ss_dssp CTTCCC-CEEE
T ss_pred cCCcch-hhhc
Confidence 777777 6665
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=5.3e-17 Score=158.53 Aligned_cols=241 Identities=12% Similarity=0.014 Sum_probs=166.6
Q ss_pred CCCCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCC--------CCCCcEEEeecCCCCCCCc
Q 044868 117 LSYLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISS--------LKFLQILTLSQNRLNGQIP 188 (463)
Q Consensus 117 l~~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~--------l~~L~~L~L~~n~l~~~~p 188 (463)
+++|++|||++|.+....... +.++. ++.+.+..+ .+. +..|.+ +++|+.|+|.+ .++..-+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~---~~~~~--~~~~~~~~~-~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~ 117 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA---GTYPN--GKFYIYMAN-FVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED 117 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS---SSSGG--GCCEEECTT-EEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred hccCeEEecCcceeEEecCcc---ccccc--ccccccccc-ccC---HHHhcccccccccccCCCcEEECCc-cccchhH
Confidence 889999999998753101111 11111 334444443 111 124555 89999999988 7774445
Q ss_pred cccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcC----CCCCchhhcCCCCc-------------------
Q 044868 189 VKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSL----TGSIPSTIGQLGML------------------- 245 (463)
Q Consensus 189 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L------------------- 245 (463)
..|.++++|++|++++|.+....+..|.++.++..+.+..+.. .......|.++..|
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 5678899999999999888766667777777777776654221 11112223333333
Q ss_pred -------CEEeccCCCCCCCCchhh-hcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCC
Q 044868 246 -------QKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKL 317 (463)
Q Consensus 246 -------~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 317 (463)
+.+.+.++-.. .....+ ..+++|+.+++++|+++...+..|.++.+|+++++.+| +....+..|.++++|
T Consensus 198 ~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp TCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 34444333111 111111 23889999999999998666678999999999999998 777777889999999
Q ss_pred C-EEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEc
Q 044868 318 Q-ELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNL 370 (463)
Q Consensus 318 ~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 370 (463)
+ .+++.+ .++...+.+|.++++|+++++++|+++...+..|.++++|+.++.
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9 999998 777677789999999999999999999666778999999999864
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=9.8e-16 Score=137.75 Aligned_cols=130 Identities=24% Similarity=0.279 Sum_probs=96.5
Q ss_pred CEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCC
Q 044868 246 QKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANS 325 (463)
Q Consensus 246 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 325 (463)
+.+++++|+++ .+|..+ .++|++|++++|.++ .+|..+.++++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666665 445433 246777777777776 56667777777777777777777777777778888888888888
Q ss_pred CCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccC
Q 044868 326 GYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVV 379 (463)
Q Consensus 326 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 379 (463)
++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+....
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 888777777888888888888888888655556778888888888888887543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.3e-15 Score=134.82 Aligned_cols=133 Identities=26% Similarity=0.261 Sum_probs=92.6
Q ss_pred cCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccC
Q 044868 245 LQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLAN 324 (463)
Q Consensus 245 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 324 (463)
.+.+++++|+++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345566666655 334322 25666777777776655555566777777777777777666666667777888888888
Q ss_pred CCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCC
Q 044868 325 SGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 325 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 380 (463)
|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88876666667778888888888888885555556778888888888888887654
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1.7e-17 Score=149.80 Aligned_cols=127 Identities=23% Similarity=0.292 Sum_probs=65.2
Q ss_pred hhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCC
Q 044868 238 TIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKL 317 (463)
Q Consensus 238 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 317 (463)
.+..+++|++|++++|++++ +| .+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.+ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 55555555555555555553 34 4555555555555555555 344444444555555555555544 22 34445555
Q ss_pred CEEeccCCCCCCCCc-cccCCCCcccEEEcccccCCCCchh----------hhCCCCCCCeEE
Q 044868 318 QELRLANSGYSGSIP-PSFSQLNNLSTLSLQNNRLTGEIPV----------VFGSLSHIYHLN 369 (463)
Q Consensus 318 ~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~----------~l~~l~~L~~L~ 369 (463)
++|++++|++++..+ ..+..+++|++|++++|.+++.+|. .+..+++|++||
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 555555555553211 2445555555555555555544332 144555555554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.8e-17 Score=149.68 Aligned_cols=109 Identities=30% Similarity=0.379 Sum_probs=43.5
Q ss_pred ccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCC
Q 044868 190 KIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLL 269 (463)
Q Consensus 190 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 269 (463)
.+.++++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 33344444444444444432 33 3334444444444444443 233333333444444444444442 22 23344444
Q ss_pred CEEEeeCCCCCCCCc-hhhhCCCCCcEeecCCCCC
Q 044868 270 AFMALSNNKLTGNFP-KGLAKLQSLQYFLMDDNPM 303 (463)
Q Consensus 270 ~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l 303 (463)
++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 444444444432111 2333444444444444443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5.1e-15 Score=130.86 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=60.3
Q ss_pred CCCCcCEEeccCCCCCCCCchhhhcC-CCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCE
Q 044868 241 QLGMLQKLDLSSNSLTGSIPDSIDKL-SLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQE 319 (463)
Q Consensus 241 ~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 319 (463)
.+++|++|++++|+++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 33444444444444442 222 2222 2455555555544432 23444455555555555554433333345555555
Q ss_pred EeccCCCCCCCCcc--ccCCCCcccEEEcccccCCCCchhh----hCCCCCCCeEEccCCCC
Q 044868 320 LRLANSGYSGSIPP--SFSQLNNLSTLSLQNNRLTGEIPVV----FGSLSHIYHLNLSRNFL 375 (463)
Q Consensus 320 L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l 375 (463)
|++++|.++ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555553 2333 4445555555555555555 33332 45555555555555544
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=8.4e-15 Score=129.49 Aligned_cols=60 Identities=18% Similarity=0.063 Sum_probs=24.2
Q ss_pred CCCCCcEEEeecCCCCCCCccccCCCC-CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCC
Q 044868 169 SLKFLQILTLSQNRLNGQIPVKIFSLN-SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLT 232 (463)
Q Consensus 169 ~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 232 (463)
++.+|++|++++|+++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|+++
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence 3444444444444444 2222 22222 444444444444422 23333444444444444443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.55 E-value=1.4e-14 Score=127.35 Aligned_cols=109 Identities=26% Similarity=0.258 Sum_probs=79.5
Q ss_pred CcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccC
Q 044868 293 LQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSR 372 (463)
Q Consensus 293 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 372 (463)
.+++++++|.+.. +|..+ .++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666666644 33333 25677777777777776677777788888888888888766666677788888888888
Q ss_pred CCCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 373 NFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 373 N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
|+|++..+..+..+++| +.|++++|++.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L-~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSL-THIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTC-CEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCC-CEEEeCCCCCCCCch
Confidence 88887666667777888 888888888888876
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.53 E-value=3.8e-13 Score=134.57 Aligned_cols=238 Identities=11% Similarity=0.035 Sum_probs=151.5
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcc
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLS 227 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 227 (463)
|+.+.+..+ +...-..+|.+. +|+.+.+.. .+...-+..|.++++|+.+++++|+++..-...|. ..+|+.+.+.
T Consensus 137 L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred ccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 777777655 333333456553 577777764 55533445667777888888877777733333444 5777887776
Q ss_pred cCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCC---
Q 044868 228 YNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMF--- 304 (463)
Q Consensus 228 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--- 304 (463)
.+ +...-..+|.++++|+.+++..+ ++......|.+ .+|+.+.+. +.++..-..+|.++++|+++.+.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 43 55445566777777888877754 44333445555 677777774 3444344566777778888887776654
Q ss_pred --CCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCC
Q 044868 305 --IPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFN 382 (463)
Q Consensus 305 --~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 382 (463)
...+..|.++++|+.+++. +.++.....+|.++++|+.++|..| ++......|.++ +|+.+++++|.+....+..
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 3445567777788888887 3465455567777788888888544 554445567777 7888888887776555555
Q ss_pred chhhh-ccCCeEeccCC
Q 044868 383 SSFLK-RLGRNLDLSGN 398 (463)
Q Consensus 383 ~~~l~-~L~~~L~L~~N 398 (463)
+..++ .+ +.+++..+
T Consensus 365 F~~~~~~l-~~l~vp~~ 380 (401)
T 4fdw_A 365 WYGFPDDI-TVIRVPAE 380 (401)
T ss_dssp CCCSCTTC-CEEEECGG
T ss_pred ccCCCCCc-cEEEeCHH
Confidence 54443 34 56666554
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=5.1e-13 Score=133.65 Aligned_cols=246 Identities=12% Similarity=0.105 Sum_probs=190.1
Q ss_pred cccCCCCCCEEEcccCCCCCcccccc-cccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCcccc
Q 044868 113 QIFSLSYLQSVFFFSCFTHTKTTLSV-SADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKI 191 (463)
Q Consensus 113 ~l~~l~~L~~L~L~~~~~~~~~~ip~-~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 191 (463)
.+.+ .+|+.+++..+- ..|+. .+.+ . +|+.+.+..+ +...-+..|.++++|+.+++.+|+++ .++...
T Consensus 131 aF~~-~~L~~i~l~~~i----~~I~~~aF~~-~--~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~a 199 (401)
T 4fdw_A 131 AFRN-SQIAKVVLNEGL----KSIGDMAFFN-S--TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKIT-KLPAST 199 (401)
T ss_dssp TTTT-CCCSEEECCTTC----CEECTTTTTT-C--CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCS-EECTTT
T ss_pred hccc-CCccEEEeCCCc----cEECHHhcCC-C--CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcce-Eechhh
Confidence 3444 479999987652 23333 2333 2 3999999864 44444567999999999999999998 566655
Q ss_pred CCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCE
Q 044868 192 FSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAF 271 (463)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 271 (463)
..+.+|+.+.+..+ +...-...|.++++|+.+++..+ ++..-..+|.+ .+|+.+.+. +.++......|.++++|+.
T Consensus 200 F~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAE 275 (401)
T ss_dssp TTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCE
T ss_pred EeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCE
Confidence 55799999999854 66555678899999999999875 55445566766 899999995 5566556778999999999
Q ss_pred EEeeCCCCC-----CCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEc
Q 044868 272 MALSNNKLT-----GNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSL 346 (463)
Q Consensus 272 L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 346 (463)
+++.+|.+. ...+..|.++++|+.+.+.+ .+.......|.++++|+.+.|..+ ++.....+|.++ +|+.+++
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l 352 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKV 352 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEE
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEE
Confidence 999998775 24456789999999999994 477677788999999999999665 665667789999 9999999
Q ss_pred ccccCCCCchhhhCCCC-CCCeEEccCCCCC
Q 044868 347 QNNRLTGEIPVVFGSLS-HIYHLNLSRNFLD 376 (463)
Q Consensus 347 s~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~ 376 (463)
.+|.+....+..|..++ +++.|++..+.+.
T Consensus 353 ~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 353 EGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 99998865666777774 7888988776543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=7.1e-14 Score=123.33 Aligned_cols=108 Identities=26% Similarity=0.301 Sum_probs=67.8
Q ss_pred cEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCC
Q 044868 294 QYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRN 373 (463)
Q Consensus 294 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 373 (463)
+.+++++|.+. .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555552 2333322 56666666666666665666666677777777777776544445566777777777777
Q ss_pred CCCccCCCCchhhhccCCeEeccCCCCCCCCc
Q 044868 374 FLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNP 405 (463)
Q Consensus 374 ~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~ 405 (463)
+|++..+..+..+++| +.|++++|++.|.|.
T Consensus 92 ~l~~l~~~~~~~l~~L-~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSL-THIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTC-SEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCC-CEEEeCCCCcccccc
Confidence 7776555556666677 777777777777765
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=1.5e-13 Score=120.83 Aligned_cols=109 Identities=26% Similarity=0.309 Sum_probs=79.4
Q ss_pred CCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEccc
Q 044868 269 LAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQN 348 (463)
Q Consensus 269 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 348 (463)
.+.+++++|.++ .+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 355666666665 3454442 5677777777777777777777777888888888888766666677888888888888
Q ss_pred ccCCCCchhhhCCCCCCCeEEccCCCCCccCC
Q 044868 349 NRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 349 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 380 (463)
|++++..+..+..+++|++|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88886666667888888888888888876543
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=3.9e-13 Score=118.58 Aligned_cols=107 Identities=24% Similarity=0.345 Sum_probs=78.5
Q ss_pred CEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccc
Q 044868 270 AFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNN 349 (463)
Q Consensus 270 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 349 (463)
+.+++++|.++ .+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46666666665 4555443 56777777777777777777777788888888888887655556678888888888888
Q ss_pred cCCCCchhhhCCCCCCCeEEccCCCCCccC
Q 044868 350 RLTGEIPVVFGSLSHIYHLNLSRNFLDGVV 379 (463)
Q Consensus 350 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 379 (463)
++++..+..+..+++|++|+|++|.+....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888655556788888888888888887543
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=4.9e-13 Score=131.14 Aligned_cols=105 Identities=22% Similarity=0.191 Sum_probs=66.3
Q ss_pred EEEeeCC-CCCCCCchhhhCCCCCcEeecCC-CCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEccc
Q 044868 271 FMALSNN-KLTGNFPKGLAKLQSLQYFLMDD-NPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQN 348 (463)
Q Consensus 271 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 348 (463)
.++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4566 66666777777764 666666666666666666666666666666666666666666666666
Q ss_pred ccCCCCchhhhCCCCCCCeEEccCCCCCcc
Q 044868 349 NRLTGEIPVVFGSLSHIYHLNLSRNFLDGV 378 (463)
Q Consensus 349 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 378 (463)
|+|++..+..+..++ |+.|+|++|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 666644444444443 66666666666543
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=1.3e-14 Score=143.95 Aligned_cols=112 Identities=25% Similarity=0.215 Sum_probs=53.8
Q ss_pred CCcCEEeccCCCCCCCCchhh-----hcCCCCCEEEeeCCCCCC----CCchhhhCCCCCcEeecCCCCCCCCC----ch
Q 044868 243 GMLQKLDLSSNSLTGSIPDSI-----DKLSLLAFMALSNNKLTG----NFPKGLAKLQSLQYFLMDDNPMFIPL----PV 309 (463)
Q Consensus 243 ~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~----~~ 309 (463)
++|++|+|++|.+++.....+ ...++|++|+|++|.++. .++..+...++|++|+|++|.+.+.. ..
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 345555555555543222222 123455555555555542 12233345555555555555554321 23
Q ss_pred hhhCCCCCCEEeccCCCCCCC----CccccCCCCcccEEEcccccCCCC
Q 044868 310 EFGILVKLQELRLANSGYSGS----IPPSFSQLNNLSTLSLQNNRLTGE 354 (463)
Q Consensus 310 ~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 354 (463)
.+...++|++|+|++|.+++. +...+...++|++|+|++|.+++.
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 344455566666666655532 222233445566666666666543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=4e-14 Score=140.32 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=117.6
Q ss_pred CCCCEEEcccCcCCCCCchhh----c-CCCCcCEEeccCCCCCCCCchhh-hcCCCCCEEEeeCCCCCCCCchhh-----
Q 044868 219 RNLVGLDLSYNSLTGSIPSTI----G-QLGMLQKLDLSSNSLTGSIPDSI-DKLSLLAFMALSNNKLTGNFPKGL----- 287 (463)
Q Consensus 219 ~~L~~L~L~~n~l~~~~p~~l----~-~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l----- 287 (463)
+.|++|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456777777777664333332 2 22688888888888865433333 345689999999999975443333
Q ss_pred hCCCCCcEeecCCCCCCCC----CchhhhCCCCCCEEeccCCCCCCCC----ccccCCCCcccEEEcccccCCCC----c
Q 044868 288 AKLQSLQYFLMDDNPMFIP----LPVEFGILVKLQELRLANSGYSGSI----PPSFSQLNNLSTLSLQNNRLTGE----I 355 (463)
Q Consensus 288 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~----~ 355 (463)
...++|++|+|++|.++.. ++..+...++|++|+|++|.+++.. +..+...++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2468899999999998653 3444577899999999999997532 45667778999999999999853 3
Q ss_pred hhhhCCCCCCCeEEccCCCCCccCC
Q 044868 356 PVVFGSLSHIYHLNLSRNFLDGVVP 380 (463)
Q Consensus 356 p~~l~~l~~L~~L~L~~N~l~~~~p 380 (463)
...+...++|++|+|++|.|+....
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHH
Confidence 4455567899999999999986543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.9e-12 Score=126.97 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=82.5
Q ss_pred CEEeccCC-CCCCCCchhhhcCCCCCEEEeeC-CCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEecc
Q 044868 246 QKLDLSSN-SLTGSIPDSIDKLSLLAFMALSN-NKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLA 323 (463)
Q Consensus 246 ~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 323 (463)
..++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677776 777 4777 88888888888885 88887777778888888888888888888888888888888888888
Q ss_pred CCCCCCCCccccCCCCcccEEEcccccCCC
Q 044868 324 NSGYSGSIPPSFSQLNNLSTLSLQNNRLTG 353 (463)
Q Consensus 324 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 353 (463)
+|+|++..+..+..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888865555565555 8888888888874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=6.5e-11 Score=116.44 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=54.4
Q ss_pred CCCCCCEEeccCCCCCCCCcccc---CCCCcccEEEcccccCCCC----chhhhCCCCCCCeEEccCCCCCccCCCCchh
Q 044868 313 ILVKLQELRLANSGYSGSIPPSF---SQLNNLSTLSLQNNRLTGE----IPVVFGSLSHIYHLNLSRNFLDGVVPFNSSF 385 (463)
Q Consensus 313 ~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 385 (463)
.+++|++|+|++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|+|++|.++... ...
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~---~~~ 326 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM---KKE 326 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH---HHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH---HHH
Confidence 35677777777777764332222 2467888888888888754 3333445688899999888877542 233
Q ss_pred hhc-cCCeEeccCCC
Q 044868 386 LKR-LGRNLDLSGNP 399 (463)
Q Consensus 386 l~~-L~~~L~L~~N~ 399 (463)
+.. +...+++++|+
T Consensus 327 l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 327 LQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHCCSEEECCSBC
T ss_pred HHHHcCCEEEecCCc
Confidence 333 33578888887
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.07 E-value=2e-09 Score=107.35 Aligned_cols=199 Identities=14% Similarity=0.066 Sum_probs=103.2
Q ss_pred ccCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCC--------------
Q 044868 190 KIFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSL-------------- 255 (463)
Q Consensus 190 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-------------- 255 (463)
.|.++++|+.+.+..+. ...-...|.++.+|+.+++..+ +.......+.++..|+.+.+..+..
T Consensus 157 aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 34455666666665432 2122344555566666655443 2222233444445555444433221
Q ss_pred -------CCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCC
Q 044868 256 -------TGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYS 328 (463)
Q Consensus 256 -------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 328 (463)
+......+..+..|+.+.+..+... .....+..+..++.+....+.+ ....+..+.+|+.+.+..+ +.
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~ 309 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK 309 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC
T ss_pred EEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc
Confidence 1111223334444555544443222 2223344455555554444322 1234556677777777654 44
Q ss_pred CCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCC
Q 044868 329 GSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGN 398 (463)
Q Consensus 329 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N 398 (463)
.....+|.++++|+.+++.++ ++..-...|.++++|+.+++..| ++......|..+.+| +.+++..+
T Consensus 310 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~lp~~ 376 (394)
T 4fs7_A 310 FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL-KKVELPKR 376 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC-CEEEEEGG
T ss_pred eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC-CEEEECCC
Confidence 344556777777777777643 55333456777777887777665 665555667777777 77776543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=1e-10 Score=114.99 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=29.1
Q ss_pred CCCCCEEeccCCCCCCCC----ccccCCCCcccEEEcccccCCCCchhhhCC-CCCCCeEEccCCC
Q 044868 314 LVKLQELRLANSGYSGSI----PPSFSQLNNLSTLSLQNNRLTGEIPVVFGS-LSHIYHLNLSRNF 374 (463)
Q Consensus 314 l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~N~ 374 (463)
+++|++|+|+.|.+++.. +..+..+++|+.|+|++|.+++..-..+.. + ...++++.++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 445555566555555421 222233456666666666665433333332 1 2446666655
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=2.8e-08 Score=99.00 Aligned_cols=109 Identities=15% Similarity=0.158 Sum_probs=65.9
Q ss_pred hhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCC
Q 044868 286 GLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHI 365 (463)
Q Consensus 286 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 365 (463)
+|..+..|+.+.+.++.. ......|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++..-...|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 456667777777755432 2333456667777777775 3444344456777777777777654 443334566777777
Q ss_pred CeEEccCCCCCccCCCCchhhhccCCeEeccCCC
Q 044868 366 YHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNP 399 (463)
Q Consensus 366 ~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~ 399 (463)
+.+.+..+ ++..-...|..+.+| +.+++.+|.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L-~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTAL-NNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTC-CEEEESSCH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCC-CEEEECCce
Confidence 77777543 554444556666777 777776653
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.87 E-value=3.2e-08 Score=98.55 Aligned_cols=220 Identities=14% Similarity=0.029 Sum_probs=149.1
Q ss_pred cccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCcEEEcccCCCCCCCchhcCCC
Q 044868 139 SADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLVHLDLSYNLLAGTIPVQVGNL 218 (463)
Q Consensus 139 ~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 218 (463)
.+.++++ |+.+.+..+ ....-...|.++.+|+.+++..+ ++......+.++..|+.+.+..+... +.+.....
T Consensus 157 aF~~c~~--L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 157 AFATCES--LEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp TTTTCTT--CCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred hhcccCC--CcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence 4556666 999998765 23233356788899999988766 44233446677888888877665432 33334455
Q ss_pred CCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeec
Q 044868 219 RNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLM 298 (463)
Q Consensus 219 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 298 (463)
.+|+.+.+..+ ++......+..+..|+.+.+..+... .....+.....++.+....+.+. ...+..+.+|+++.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence 67888887643 33233456677788888888766433 44456777888888877665433 235677788888888
Q ss_pred CCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCC
Q 044868 299 DDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRN 373 (463)
Q Consensus 299 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N 373 (463)
.++ +.......|.++++|+.+++..+ ++.....+|.++.+|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 655 54445566788888888888644 55455667888888888888766 65444567888888888888754
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.78 E-value=3e-07 Score=91.49 Aligned_cols=109 Identities=11% Similarity=0.161 Sum_probs=62.8
Q ss_pred hhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcc
Q 044868 262 SIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNL 341 (463)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 341 (463)
.|.++..|+.+.+.++... .-...+.++++|+.+.+.. .+.......|.++.+|+.+++..+ ++.....+|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 3445566666666544322 3334566666777776652 344444455666677777777543 443444566667777
Q ss_pred cEEEcccccCCCCchhhhCCCCCCCeEEccCCC
Q 044868 342 STLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNF 374 (463)
Q Consensus 342 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 374 (463)
+.+.+..+ ++..-...|.++++|+.+++.++.
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 77777543 443334566677777777776654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.61 E-value=3.1e-06 Score=83.49 Aligned_cols=267 Identities=13% Similarity=0.035 Sum_probs=136.6
Q ss_pred ccccCCCCCCEEEcccCCCCCcccccc-cccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccc
Q 044868 112 YQIFSLSYLQSVFFFSCFTHTKTTLSV-SADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVK 190 (463)
Q Consensus 112 ~~l~~l~~L~~L~L~~~~~~~~~~ip~-~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 190 (463)
.++.+|.+|+.+++..+- ..|.. .+.++ . |+.+.+..+ +...-...|.. .+|+.+++..+- . .+...
T Consensus 63 ~aF~~C~~L~~I~lp~~v----~~Ig~~aF~~c-~--l~~i~~~~~--l~~I~~~aF~~-~~L~~i~lp~~~-~-~i~~~ 130 (379)
T 4h09_A 63 ANFNSCYNMTKVTVASTV----TSIGDGAFADT-K--LQSYTGMER--VKKFGDYVFQG-TDLDDFEFPGAT-T-EIGNY 130 (379)
T ss_dssp TTTTTCTTCCEEEECTTC----CEECTTTTTTC-C--CCEEEECTT--CCEECTTTTTT-CCCSEEECCTTC-C-EECTT
T ss_pred HHhhCCCCCCEEEeCCcc----eEechhhhcCC-C--CceEECCce--eeEeccceecc-CCcccccCCCcc-c-ccccc
Confidence 356677888888876531 22322 22332 2 666666544 22111223433 367777776442 2 22222
Q ss_pred cCCCCCCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCcCCC------------CCchhhcCCCCcCEEeccCCCCCCC
Q 044868 191 IFSLNSLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNSLTG------------SIPSTIGQLGMLQKLDLSSNSLTGS 258 (463)
Q Consensus 191 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L~L~~n~l~~~ 258 (463)
.....+|+.+.+..+ ++..-...+..+.+++.+.+..+.... .....+.....+..+.+.... ...
T Consensus 131 ~F~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i 208 (379)
T 4h09_A 131 IFYNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTV 208 (379)
T ss_dssp TTTTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEE
T ss_pred ccccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEE
Confidence 222235555555432 222333445566666666655433220 111122233344444433221 112
Q ss_pred CchhhhcCCCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCC
Q 044868 259 IPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQL 338 (463)
Q Consensus 259 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 338 (463)
....+....+|+.+.+..+ +.......+..+..|+.+.+..+ +.......+.++.+|+.+.+..+ +.......|.++
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 2334455566666666543 22233345666677777777654 43344455666677777777543 433334466677
Q ss_pred CcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccC
Q 044868 339 NNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSG 397 (463)
Q Consensus 339 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~ 397 (463)
++|+.+.+.++.++..-...|.++.+|+.++|..+ ++..-...|..+.+| +.+.+..
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L-~~i~ip~ 342 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL-STISYPK 342 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC-CCCCCCT
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC-CEEEECC
Confidence 77777777777666444556777777777777543 554445556666666 6666543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=2e-08 Score=88.99 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=8.7
Q ss_pred cCCCCCCcEEEeecC-CCC
Q 044868 167 ISSLKFLQILTLSQN-RLN 184 (463)
Q Consensus 167 l~~l~~L~~L~L~~n-~l~ 184 (463)
+...+.|++|+|++| .+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HTTCTTCCEEECTTCTTCC
T ss_pred HhcCCCCCEEEecCCCCCC
Confidence 344455555555554 443
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.58 E-value=2.1e-08 Score=88.89 Aligned_cols=13 Identities=15% Similarity=0.097 Sum_probs=5.7
Q ss_pred CCCCCcEEEcccC
Q 044868 193 SLNSLVHLDLSYN 205 (463)
Q Consensus 193 ~l~~L~~L~Ls~n 205 (463)
..++|++|+|++|
T Consensus 34 ~~~~L~~L~L~~n 46 (185)
T 1io0_A 34 NDPDLEEVNLNNI 46 (185)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCCCCCEEEecCC
Confidence 3344444444444
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.37 E-value=2.8e-05 Score=76.55 Aligned_cols=250 Identities=12% Similarity=0.010 Sum_probs=157.1
Q ss_pred CCCEEEcccCCCCCcccccccccccCCCCccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCCCCCCCccccCCCCCCc
Q 044868 119 YLQSVFFFSCFTHTKTTLSVSADRLYNSSLQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNRLNGQIPVKIFSLNSLV 198 (463)
Q Consensus 119 ~L~~L~L~~~~~~~~~~ip~~~~~l~~~~L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 198 (463)
.|+.+.+..+- ..+........+ |+.+++..+ +...-...|.+. +|+.+.+..+ ++......+.++.+++
T Consensus 92 ~l~~i~~~~~l----~~I~~~aF~~~~--L~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~ 161 (379)
T 4h09_A 92 KLQSYTGMERV----KKFGDYVFQGTD--LDDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLE 161 (379)
T ss_dssp CCCEEEECTTC----CEECTTTTTTCC--CSEEECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCC
T ss_pred CCceEECCcee----eEeccceeccCC--cccccCCCc--cccccccccccc-eeeeeeccce-eeccccchhccccccc
Confidence 57777665431 233333222233 888888765 222222334443 5666666543 3323344566788888
Q ss_pred EEEcccCCCCC------------CCchhcCCCCCCCEEEcccCcCCCCCchhhcCCCCcCEEeccCCCCCCCCchhhhcC
Q 044868 199 HLDLSYNLLAG------------TIPVQVGNLRNLVGLDLSYNSLTGSIPSTIGQLGMLQKLDLSSNSLTGSIPDSIDKL 266 (463)
Q Consensus 199 ~L~Ls~n~l~~------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 266 (463)
.+.+..+.... .....+.....+..+.+..... ......+....+|+.+.+..+ +.......+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~ 239 (379)
T 4h09_A 162 KIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGM 239 (379)
T ss_dssp EEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTC
T ss_pred ccccccccceeecccceecccccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCC
Confidence 88776544321 1222344455666665544322 233455667788888888654 333445567788
Q ss_pred CCCCEEEeeCCCCCCCCchhhhCCCCCcEeecCCCCCCCCCchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEc
Q 044868 267 SLLAFMALSNNKLTGNFPKGLAKLQSLQYFLMDDNPMFIPLPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSL 346 (463)
Q Consensus 267 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 346 (463)
..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +.......|.++++|+.+.+.++.++.....+|.++.+|+.++|
T Consensus 240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 89999998765 44344566788889999988654 44445567888999999999988888666778999999999999
Q ss_pred ccccCCCCchhhhCCCCCCCeEEccCCCCCccCCCCch
Q 044868 347 QNNRLTGEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSS 384 (463)
Q Consensus 347 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 384 (463)
..+ ++..-..+|.++++|+.+.+..+ ++..-...|.
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFE 353 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence 754 65344567888999999888654 4433333343
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=7.4e-08 Score=90.09 Aligned_cols=40 Identities=35% Similarity=0.471 Sum_probs=17.9
Q ss_pred CCCCCCEEEcccCcCCC--CCchhhcCCCCcCEEeccCCCCC
Q 044868 217 NLRNLVGLDLSYNSLTG--SIPSTIGQLGMLQKLDLSSNSLT 256 (463)
Q Consensus 217 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~ 256 (463)
++++|++|+|++|++++ .++..+..+++|+.|+|++|+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34455555555555543 22233334444444444444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=6.5e-08 Score=90.49 Aligned_cols=65 Identities=26% Similarity=0.409 Sum_probs=34.9
Q ss_pred CCCCcCEEeccCCCCCC--CCchhhhcCCCCCEEEeeCCCCCCCCchhhhCCC--CCcEeecCCCCCCCCC
Q 044868 241 QLGMLQKLDLSSNSLTG--SIPDSIDKLSLLAFMALSNNKLTGNFPKGLAKLQ--SLQYFLMDDNPMFIPL 307 (463)
Q Consensus 241 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~~ 307 (463)
++++|+.|+|++|++++ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 45666666666666665 3344555566666666666666542 2233332 5555555555554433
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.07 E-value=2.9e-06 Score=73.79 Aligned_cols=82 Identities=12% Similarity=0.133 Sum_probs=35.9
Q ss_pred CCcEEEcccCCCCCCCchhcCCCCCCCEEEcccCc-CCCCCchhhcCC----CCcCEEeccCCC-CCCCCchhhhcCCCC
Q 044868 196 SLVHLDLSYNLLAGTIPVQVGNLRNLVGLDLSYNS-LTGSIPSTIGQL----GMLQKLDLSSNS-LTGSIPDSIDKLSLL 269 (463)
Q Consensus 196 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L 269 (463)
+|++||++++.++..--..+.++++|++|+|++|. ++..--..++.+ ++|++|+|++|. +++..-..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443323333444445555554443 332222223332 245555555542 443333344455555
Q ss_pred CEEEeeCC
Q 044868 270 AFMALSNN 277 (463)
Q Consensus 270 ~~L~L~~n 277 (463)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555555
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.05 E-value=7.4e-06 Score=67.86 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=53.9
Q ss_pred cEEEcccccCC-CCchhhhCCCCCCCeEEccCCCCCccCCCCchhhhccCCeEeccCCCCCCCCcccccccc
Q 044868 342 STLSLQNNRLT-GEIPVVFGSLSHIYHLNLSRNFLDGVVPFNSSFLKRLGRNLDLSGNPGLCLNPAEAYSVK 412 (463)
Q Consensus 342 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~~L~L~~N~~~c~~~~~~~~~~ 412 (463)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+..+..++.+ +.|+|++|||.|+|...||..+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L-~~L~L~~NP~~CdC~l~~l~~w 79 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPAL-RTAHLGANPWRCDCRLVPLRAW 79 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTC-CEEECCSSCCBCSGGGHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhcccc-CEEEecCCCeeccCccHHHHHH
Confidence 36778888876 35665433 468999999999997777778888899 9999999999999998875543
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=3.1e-06 Score=73.63 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=39.9
Q ss_pred ccEEEccCCCCCCCCCchhcCCCCCCcEEEeecCC-CCCCCccccCCC----CCCcEEEcccCC-CCCCCchhcCCCCCC
Q 044868 148 LQQLSLRSNPALVGPIPPQISSLKFLQILTLSQNR-LNGQIPVKIFSL----NSLVHLDLSYNL-LAGTIPVQVGNLRNL 221 (463)
Q Consensus 148 L~~L~Ls~n~~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 221 (463)
|++||++++ .++..--..+.++++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+..+++|
T Consensus 63 L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 63 IQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp EEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred EeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 666666666 4544433445566666666666663 432222223332 245555555553 443222334444555
Q ss_pred CEEEcccC
Q 044868 222 VGLDLSYN 229 (463)
Q Consensus 222 ~~L~L~~n 229 (463)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.48 E-value=7e-05 Score=66.28 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=18.8
Q ss_pred CCCCCCcEEEeecC-CCCCC----CccccCCCCCCcEEEcccCCCC
Q 044868 168 SSLKFLQILTLSQN-RLNGQ----IPVKIFSLNSLVHLDLSYNLLA 208 (463)
Q Consensus 168 ~~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 208 (463)
.+-+.|++|+|++| ++... +...+..-+.|++|+|++|++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34455666666553 44311 2223333445555555555544
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=0.00012 Score=64.82 Aligned_cols=15 Identities=27% Similarity=0.270 Sum_probs=6.6
Q ss_pred CCCCCEEEeeCCCCC
Q 044868 266 LSLLAFMALSNNKLT 280 (463)
Q Consensus 266 l~~L~~L~L~~n~l~ 280 (463)
-+.|++|+|++|.|.
T Consensus 97 N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 97 SPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECCSSBCC
T ss_pred CCccCeEecCCCcCC
Confidence 344444444444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.49 E-value=0.0045 Score=50.84 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=39.4
Q ss_pred EEeccCCCCC-CCCccccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccCCCCCc
Q 044868 319 ELRLANSGYS-GSIPPSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSRNFLDG 377 (463)
Q Consensus 319 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 377 (463)
.++-++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666666665 24554432 467888888888885555567778888888888888763
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.91 E-value=66 Score=24.15 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=16.5
Q ss_pred cccCCCCcccEEEcccccCCCCchhhhCCCCCCCeEEccC
Q 044868 333 PSFSQLNNLSTLSLQNNRLTGEIPVVFGSLSHIYHLNLSR 372 (463)
Q Consensus 333 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 372 (463)
.+|.++.+|+.+.+-.+ ++..-...|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444444444444432 2212233444445555554443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.96 E-value=74 Score=23.89 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=24.2
Q ss_pred CchhhhCCCCCCEEeccCCCCCCCCccccCCCCcccEEEccc
Q 044868 307 LPVEFGILVKLQELRLANSGYSGSIPPSFSQLNNLSTLSLQN 348 (463)
Q Consensus 307 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 348 (463)
....|.++++|+.+.+-.+ ++.+...+|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3345566666666666543 3334455677777777776654
Done!