BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044871
         (189 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
           Methylesterase And Its Inhibitor Protein
          Length = 153

 Score = 35.8 bits (81), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 11/152 (7%)

Query: 41  LVDSVCKNALNYSDCVSALESDPQTPSASDXXXXXXXXXXXXVTNTTNGKDYIAKMAKDS 100
           L+  +C    N S C+ ALESDP++ S  D              +       IA +  + 
Sbjct: 5   LISEICPKTRNPSLCLQALESDPRSAS-KDLKGLGQFSIDIAQASAKQTSKIIASLT-NQ 62

Query: 101 STATSLVPALKQCVSDYESAVVSFDSAKVEL-DEDVMSANYDAKAAGDSAVSCETSLNST 159
           +T   L    + C  +Y  A+ S   AK  L   D  S N  A AA D A +CE S    
Sbjct: 63  ATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGP 122

Query: 160 RLDVPSVRARNYYVNL----FSNIGYVITDML 187
               P++  + +  +L      +I  VI+++L
Sbjct: 123 ----PNIPTQLHQADLKLEDLCDIVLVISNLL 150


>pdb|1X8Z|A Chain A, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
 pdb|1X8Z|B Chain B, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
 pdb|1X8Z|C Chain C, Crystal Structure Of A Pectin Methylesterase Inhibitor
           From Arabidopsis Thaliana
          Length = 153

 Score = 33.1 bits (74), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 5/150 (3%)

Query: 39  STLVDSVCKNALNYSDCVSALESDPQTPSASDXXXXXXXXXXXXVTNTTNGKDYIAKMAK 98
           S+ + ++C   LN S C+  L +   +P+                T T      I     
Sbjct: 5   SSEMSTICDKTLNPSFCLKFLNTKFASPNLQALAKTTLDSTQARATQTLKKLQSIIDGGV 64

Query: 99  DSSTATSLVPALKQCVSDYESAVVSFDSAKVEL-DEDVMSANYDAKAAGDSAVSCETSLN 157
           D  +      A + CV +YESA+ + + A   L   D M  N    AA D A +C   + 
Sbjct: 65  DPRSKL----AYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVK 120

Query: 158 STRLDVPSVRARNYYVNLFSNIGYVITDML 187
             R    SV   +  +     I  VI++ML
Sbjct: 121 RLRSVDSSVVNNSKTIKNLCGIALVISNML 150


>pdb|1X91|A Chain A, Crystal Structure Of Mutant Form A Of A Pectin
           Methylesterase Inhibitor From Arabidopsis
          Length = 153

 Score = 31.2 bits (69), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 109 ALKQCVSDYESAVVSFDSAKVEL-DEDVMSANYDAKAAGDSAVSCETSLNSTRLDVPSVR 167
           A + CV +YESA+ + + A   L   D M  N    AA D A +C   +   R    SV 
Sbjct: 71  AYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVV 130

Query: 168 ARNYYVNLFSNIGYVITDML 187
             +  +     I  VI++ML
Sbjct: 131 NNSKTIKNLCGIALVISNML 150


>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
           Methylesterase Inhibitor From Arabidopsis
 pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
           Methylesterase Inhibitor From Arabidopsis
          Length = 152

 Score = 31.2 bits (69), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 109 ALKQCVSDYESAVVSFDSAKVEL-DEDVMSANYDAKAAGDSAVSCETSLNSTRLDVPSVR 167
           A + CV +YESA+ + + A   L   D M  N    AA D A +C   +   R    SV 
Sbjct: 70  AYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVV 129

Query: 168 ARNYYVNLFSNIGYVITDML 187
             +  +     I  VI++ML
Sbjct: 130 NNSKTIKNLCGIALVISNML 149


>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco
 pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From
          Tobacco In Complex With Cd2+
 pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From
          Tobacco In Complex With Cd2+
 pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From
          Tobacco In Complex With Cd2+
 pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From
          Tobacco In Complex With Cd2+
          Length = 151

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 LVDSVCKNALNYSDCVSALESDPQT 65
          LV++ CKN  NY  C+  L SD ++
Sbjct: 7  LVETTCKNTPNYQLCLKTLLSDKRS 31


>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco At Ph 4.6
 pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco At Ph 4.6
 pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco (Ph 5.0)
 pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco (Ph 7.5)
 pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco (ph 9.0)
 pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco (Ph 9.5)
 pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor
          From Tobacco (Ph 9.5)
          Length = 150

 Score = 26.9 bits (58), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 LVDSVCKNALNYSDCVSALESDPQT 65
          LV++ CKN  NY  C+  L SD ++
Sbjct: 6  LVETTCKNTPNYQLCLKTLLSDKRS 30


>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In
          Complex With A Specific Protein Inhibitor
 pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In
          Complex With A Specific Protein Inhibitor
 pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In
          Complex With A Specific Protein Inhibitor
 pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In
          Complex With A Specific Protein Inhibitor
 pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In
          Complex With A Specific Protein Inhibitor
 pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In
          Complex With A Specific Protein Inhibitor
          Length = 149

 Score = 26.9 bits (58), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 41 LVDSVCKNALNYSDCVSALESDPQT 65
          LV++ CKN  NY  C+  L SD ++
Sbjct: 5  LVETTCKNTPNYQLCLKTLLSDKRS 29


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.121    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,326,855
Number of Sequences: 62578
Number of extensions: 133248
Number of successful extensions: 291
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 10
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)