Query 044871
Match_columns 189
No_of_seqs 118 out of 855
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:03:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xg2_B Pectinesterase inhibito 100.0 1.5E-34 5.1E-39 214.5 17.5 149 38-188 2-151 (153)
2 2cj4_A Invertase inhibitor; pr 100.0 4.9E-34 1.7E-38 211.3 17.1 146 37-187 2-149 (150)
3 1x91_A Invertase/pectin methyl 100.0 6E-34 2E-38 211.4 13.8 148 37-188 3-151 (153)
4 1co7_I BPTI, bovine pancreatic 39.1 6.3 0.00022 26.0 -0.0 19 40-58 33-51 (99)
5 3iqc_A FLIS, flagellar protein 28.0 79 0.0027 21.7 4.2 27 67-94 22-48 (131)
6 1vp7_A Exodeoxyribonuclease VI 22.7 1.6E+02 0.0054 19.3 4.6 23 110-132 53-75 (100)
7 3cjh_B Mitochondrial import in 22.3 1.3E+02 0.0044 17.7 3.9 29 102-130 34-62 (64)
8 3fyq_A CG6831-PA (talin); 5-he 21.4 2.5E+02 0.0087 20.8 9.8 92 50-148 90-182 (199)
9 3cjh_A Mitochondrial import in 19.9 1.4E+02 0.0047 17.6 3.7 30 102-131 25-54 (64)
10 3gyz_A Chaperone protein IPGC; 19.6 1.5E+02 0.0051 20.1 4.4 48 83-130 49-99 (151)
No 1
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis}
Probab=100.00 E-value=1.5e-34 Score=214.47 Aligned_cols=149 Identities=30% Similarity=0.415 Sum_probs=139.3
Q ss_pred cchHHHHHhhhCCCchhHHhhcccCCCCCCCCCHHHHHHHHHHHHHHHhHhHHHHHHHHhhcCCCCcchHHHHHHHHHHH
Q 044871 38 PSTLVDSVCKNALNYSDCVSALESDPQTPSASDLKALAKIAFAIAVTNTTNGKDYIAKMAKDSSTATSLVPALKQCVSDY 117 (189)
Q Consensus 38 ~~~~i~~~C~~t~~~~~C~~~L~s~p~s~~a~d~~~La~iai~~a~~~a~~a~~~i~~l~~~~~~d~~~~~aL~~C~~~y 117 (189)
+.+.|+.+|++|+||++|+++|.++|+++.+ |+++|+++++++++.++..+..+++++.+.. ++|+.+.+|++|.++|
T Consensus 2 ~~~~i~~~C~~T~~~~~C~~sL~~~~~~~~~-~~~~l~~~ai~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~y 79 (153)
T 1xg2_B 2 ENHLISEICPKTRNPSLCLQALESDPRSASK-DLKGLGQFSIDIAQASAKQTSKIIASLTNQA-TDPKLKGRYETCSENY 79 (153)
T ss_dssp CCHHHHHHGGGSSCHHHHHHHHHTCTTGGGC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHH
T ss_pred hHhHHHHHhcCCCChHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998777 9999999999999999999999999987665 4899999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cHHHHHHHHHHhcccHhhHHHhhccCCCCCCchHHhhHHHHHHHHHHHHHHhhcc
Q 044871 118 ESAVVSFDSAKVELDE-DVMSANYDAKAAGDSAVSCETSLNSTRLDVPSVRARNYYVNLFSNIGYVITDMLE 188 (189)
Q Consensus 118 ~~a~~~L~~a~~~l~~-~~~da~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~n~~~~~l~~ialai~~~l~ 188 (189)
+++++.|++++..++. +|+++++|+++|+++++||+|||.+.+..++||..++.++.+|++|+|+|+++|+
T Consensus 80 ~~a~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1xg2_B 80 ADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcccchHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987 7999999999999999999999987754678999999999999999999999885
No 2
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B*
Probab=100.00 E-value=4.9e-34 Score=211.25 Aligned_cols=146 Identities=25% Similarity=0.358 Sum_probs=135.2
Q ss_pred CcchHHHHHhhhCCCchhHHhhcccCCCCCCCCCHHHHHHHHHHHHHHHhHhHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 044871 37 SPSTLVDSVCKNALNYSDCVSALESDPQTPSASDLKALAKIAFAIAVTNTTNGKDYIAKMAKDSSTATSLVPALKQCVSD 116 (189)
Q Consensus 37 ~~~~~i~~~C~~t~~~~~C~~~L~s~p~s~~a~d~~~La~iai~~a~~~a~~a~~~i~~l~~~~~~d~~~~~aL~~C~~~ 116 (189)
++.+.|+.+|++|+||++|+++|.++|+++.+ |+++|++++++++..+++.+..+++++++.. ++++.+.+|++|.++
T Consensus 2 a~~~~I~~~C~~T~~~~~C~~sL~~~~~s~~a-d~~~la~~ai~~~~~~a~~~~~~i~~l~~~~-~~~~~~~al~dC~e~ 79 (150)
T 2cj4_A 2 AMNNLVETTCKNTPNYQLCLKTLLSDKRSATG-DITTLALIMVDAIKAKANQAAVTISKLRHSN-PPAAWKGPLKNCAFS 79 (150)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHTSGGGTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCGGGHHHHHHHHHH
T ss_pred CchHHHHHHHcCCCCccHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHH
Confidence 45789999999999999999999999999887 9999999999999999999999999987664 488999999999999
Q ss_pred HHHHH-HHHHHHHHHHHH-cHHHHHHHHHHhcccHhhHHHhhccCCCCCCchHHhhHHHHHHHHHHHHHHhhc
Q 044871 117 YESAV-VSFDSAKVELDE-DVMSANYDAKAAGDSAVSCETSLNSTRLDVPSVRARNYYVNLFSNIGYVITDML 187 (189)
Q Consensus 117 y~~a~-~~L~~a~~~l~~-~~~da~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~n~~~~~l~~ialai~~~l 187 (189)
|++++ +.|++++..++. +|+++++|+++|++++++|+|||. + .++||..++.++.+|++|+|+|++.|
T Consensus 80 y~~a~~~~L~~a~~~l~~~~~~~~~t~lsaAlt~~~tC~dgf~--~-~~~pl~~~~~~~~~l~s~aLaii~~l 149 (150)
T 2cj4_A 80 YKVILTASLPEAIEALTKGDPKFAEDGMVGSSGDAQECEEYFK--G-SKSPFSALNIAVHELSDVGRAIVRNL 149 (150)
T ss_dssp HHHHHHTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTT--T-SCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhC--C-CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 799999999987 899999999999999999999997 2 36789999999999999999999876
No 3
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A
Probab=100.00 E-value=6e-34 Score=211.37 Aligned_cols=148 Identities=27% Similarity=0.357 Sum_probs=136.0
Q ss_pred CcchHHHHHhhhCCCchhHHhhcccCCCCCCCCCHHHHHHHHHHHHHHHhHhHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q 044871 37 SPSTLVDSVCKNALNYSDCVSALESDPQTPSASDLKALAKIAFAIAVTNTTNGKDYIAKMAKDSSTATSLVPALKQCVSD 116 (189)
Q Consensus 37 ~~~~~i~~~C~~t~~~~~C~~~L~s~p~s~~a~d~~~La~iai~~a~~~a~~a~~~i~~l~~~~~~d~~~~~aL~~C~~~ 116 (189)
++.+.|+.+|++|+||++|+++| +|++..+ |+++|+++++++++.++..+..+++++.+.. ++++.+.+|++|.++
T Consensus 3 a~~~~i~~~C~~T~~~~~C~~sL--~p~~~~~-~~~~l~~~a~~~~~~~a~~~~~~~~~l~~~~-~~~~~~~al~dC~e~ 78 (153)
T 1x91_A 3 MDSSEMSTICDKTLNPSFCLKFL--NTKFASA-NLQALAKTTLDSTQARATQTLKKLQSIIDGG-VDPRSKLAYRSCVDE 78 (153)
T ss_dssp --CCSTTTGGGGSSCHHHHHHHH--HHTTCCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCChhHHHHHh--CcCcccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Confidence 45678999999999999999999 6877666 9999999999999999999999999988765 489999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-cHHHHHHHHHHhcccHhhHHHhhccCCCCCCchHHhhHHHHHHHHHHHHHHhhcc
Q 044871 117 YESAVVSFDSAKVELDE-DVMSANYDAKAAGDSAVSCETSLNSTRLDVPSVRARNYYVNLFSNIGYVITDMLE 188 (189)
Q Consensus 117 y~~a~~~L~~a~~~l~~-~~~da~~~lsaa~~~~~tC~d~f~~~~~~~~~l~~~n~~~~~l~~ialai~~~l~ 188 (189)
|+++++.|++++..++. +|+++++|+|+|+++++||+|||.+.+..++||..++.++.+|++|+|+|++.|+
T Consensus 79 y~~a~~~L~~a~~~l~~~~~~d~~t~lSaAlt~~~tC~dgf~~~~~~~~~l~~~~~~~~~l~s~aLai~~~l~ 151 (153)
T 1x91_A 79 YESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLP 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHccHhHHHHHhccCCCCcCHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 99999999999999986 7999999999999999999999987654678999999999999999999999885
No 4
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=39.06 E-value=6.3 Score=25.98 Aligned_cols=19 Identities=11% Similarity=0.211 Sum_probs=5.8
Q ss_pred hHHHHHhhhCCCchhHHhh
Q 044871 40 TLVDSVCKNALNYSDCVSA 58 (189)
Q Consensus 40 ~~i~~~C~~t~~~~~C~~~ 58 (189)
.....+|...+++..|...
T Consensus 33 ~~~~~~C~~p~~~G~C~~~ 51 (99)
T 1co7_I 33 AQRPDFCLEPPYTGPCKAR 51 (99)
T ss_dssp ----------CCCCSBCCC
T ss_pred CCCCccCCCCCcCCCCCCc
Confidence 3566788887777777543
No 5
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=28.03 E-value=79 Score=21.68 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhHhHHHHHH
Q 044871 67 SASDLKALAKIAFAIAVTNTTNGKDYIA 94 (189)
Q Consensus 67 ~a~d~~~La~iai~~a~~~a~~a~~~i~ 94 (189)
++ +|.+|..+-.+-++.....+...+.
T Consensus 22 ta-sP~~Li~mLydgal~~l~~A~~ai~ 48 (131)
T 3iqc_A 22 VE-SPAKLIEMLYEGILRFSSQAKRCIE 48 (131)
T ss_dssp -C-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 8999999999888888888877664
No 6
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=22.67 E-value=1.6e+02 Score=19.32 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044871 110 LKQCVSDYESAVVSFDSAKVELD 132 (189)
Q Consensus 110 L~~C~~~y~~a~~~L~~a~~~l~ 132 (189)
|++=.++|+.++..++.+...|.
T Consensus 53 LEesl~lyeeG~~L~k~C~~~L~ 75 (100)
T 1vp7_A 53 LEQSLSAYRRGVELARVCQDRLA 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777776666666665
No 7
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=22.31 E-value=1.3e+02 Score=17.67 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=22.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044871 102 TATSLVPALKQCVSDYESAVVSFDSAKVE 130 (189)
Q Consensus 102 ~d~~~~~aL~~C~~~y~~a~~~L~~a~~~ 130 (189)
.+.....++..|.+-|-++-..+.+.+..
T Consensus 34 L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~ 62 (64)
T 3cjh_B 34 LSSQEEQCLSNCVNRFLDTNIRIVNGLQN 62 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667799999999999988877766543
No 8
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=21.40 E-value=2.5e+02 Score=20.77 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=46.6
Q ss_pred CCchhHHhhccc-CCCCCCCCCHHHHHHHHHHHHHHHhHhHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 044871 50 LNYSDCVSALES-DPQTPSASDLKALAKIAFAIAVTNTTNGKDYIAKMAKDSSTATSLVPALKQCVSDYESAVVSFDSAK 128 (189)
Q Consensus 50 ~~~~~C~~~L~s-~p~s~~a~d~~~La~iai~~a~~~a~~a~~~i~~l~~~~~~d~~~~~aL~~C~~~y~~a~~~L~~a~ 128 (189)
..-+.|-.+|.+ || +-+..+.-+.+-......+.....+...+.+. +...+..|+.+.+.....+..|-+.+
T Consensus 90 ~~vK~gAAsl~s~dp------~tQv~LLna~kdVa~aL~~Li~atK~a~g~~~-~d~~~~~Lk~sak~~~~nV~sLl~tV 162 (199)
T 3fyq_A 90 EAVKRGACSLGSTQP------DSQVMVINAVKDVASALGDLINCTKLASGKSI-NDPSMQDLKESARVMVLNVSSLLKTV 162 (199)
T ss_dssp HHHHHHHHHHCTTCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777754 32 22232322333222222233333333333332 33458889999999999999888888
Q ss_pred HHHHHcHHHHHHHHHHhccc
Q 044871 129 VELDEDVMSANYDAKAAGDS 148 (189)
Q Consensus 129 ~~l~~~~~da~~~lsaa~~~ 148 (189)
..+..+-...-.-|..++..
T Consensus 163 ~~v~de~~rG~raLe~~i~~ 182 (199)
T 3fyq_A 163 KAVEDEHTRGTRAMEATVEA 182 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhhhHHHHHHHHHH
Confidence 77765333333344444443
No 9
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=19.88 E-value=1.4e+02 Score=17.63 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=24.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044871 102 TATSLVPALKQCVSDYESAVVSFDSAKVEL 131 (189)
Q Consensus 102 ~d~~~~~aL~~C~~~y~~a~~~L~~a~~~l 131 (189)
.+.....++..|.+-|-++-..+.+.+...
T Consensus 25 L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~ 54 (64)
T 3cjh_A 25 YATRNDACIDQCLAKYMRSWNVISKAYISR 54 (64)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999999999888887766543
No 10
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=19.64 E-value=1.5e+02 Score=20.10 Aligned_cols=48 Identities=6% Similarity=0.011 Sum_probs=34.1
Q ss_pred HHHhHhHHHHHHHHhhcCCCCcchHHHHHHHH---HHHHHHHHHHHHHHHH
Q 044871 83 VTNTTNGKDYIAKMAKDSSTATSLVPALKQCV---SDYESAVVSFDSAKVE 130 (189)
Q Consensus 83 ~~~a~~a~~~i~~l~~~~~~d~~~~~aL~~C~---~~y~~a~~~L~~a~~~ 130 (189)
..+-.++.....+.+...+.++..+..+..|. ..|+.|+..+++++..
T Consensus 49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34556677777777766666777777787776 4677888888887653
Done!