BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044872
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EPL|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPM|X Chain X, N-Acetyl-B-D-Glucoasminidase (Gcna) From Stretococcus
Gordonii
pdb|2EPN|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPN|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPO|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPO|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
Length = 627
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 33/169 (19%)
Query: 52 SHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGN 111
S +V GLD D+F+K L NL D+PD +SG IN
Sbjct: 406 SEHFLVSTGLDFDDFMKIDLANL-------------LPDLPDN--------LSG-INPNR 443
Query: 112 LEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS 171
++ LL + ++P+ ++ QLG++S + Y+ E N +A
Sbjct: 444 YVLYQDVLCPLLEQHIRPEK-DKQHFASSAQQLGEISKRAGEYAYIFETQAQLNALLALK 502
Query: 172 LVDLYAKCGNMEKARRVFDQ-----MPEKDIVSWSSMIQGYASNGFPKE 215
+ + ++KA R D+ + EKD M++ + S+ F ++
Sbjct: 503 I----SITSGIQKAYRNGDKEHLSALAEKDFPQLYQMVEDF-SDQFSRQ 546
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 42 REHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTA 101
R +D QLG L K G+ DEF +T++ N+Y DI D+ +++ A
Sbjct: 293 RTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIY-----------AIGDITDRLMLTPVA 341
Query: 102 IISGYINEG-NLEEAI--NMFRRLLHRGLKPDSFSIVRVLT 139
INEG L + + N R+ H + FSI + T
Sbjct: 342 -----INEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGT 377
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 42 REHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADAL 85
R +D QLG L K G+ DEF +T++ N+Y G + D L
Sbjct: 290 RTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYA-IGDITDRL 332
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 18/172 (10%)
Query: 274 IDMYAKCGRMAQACKVFREMKDK----DQVVWNAVV---------SGLSMNGYVKVAFGV 320
+DM +K G + +A +++ E + Q +N ++ + S N + F +
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 321 FGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS--RVFSLTPMIEHYGCMVDL 378
F Q+ + PN TF G A D+ F+ + + F + P + YG +
Sbjct: 93 FKQMIVDKVVPNEATFTN---GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149
Query: 379 LGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430
R G D+A+E+ M L A ++ T A+ V L L
Sbjct: 150 FCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 39/173 (22%)
Query: 342 GCTHAGLVDEGRQFFN-SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP---- 396
GC ++GL+ +GR N S + + + R GQ +AH L S+
Sbjct: 69 GCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGV 128
Query: 397 ----------------MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440
+EP+ WG G K A+ L +L+ P
Sbjct: 129 STIFGGVDKNGAHLYMLEPSGSYWG--YKGAATGKGRQSAKAELEKLVDHHPEG------ 180
Query: 441 LSNIYSASHKWNDAAKIRSMMGDKGIQK-----IRGCSWVEVDGVVHEFLVGD 488
SA AAKI + + +K I CS E +G +H+F+ GD
Sbjct: 181 ----LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGD 228
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 39/173 (22%)
Query: 342 GCTHAGLVDEGRQFFN-SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP---- 396
GC ++GL+ +GR N S + + + R GQ +AH L S+
Sbjct: 71 GCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGV 130
Query: 397 ----------------MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440
+EP+ WG G K A+ L +L+ P
Sbjct: 131 STIFGGVDKNGAHLYMLEPSGSYWG--YKGAATGKGRQSAKAELEKLVDHHPEG------ 182
Query: 441 LSNIYSASHKWNDAAKIRSMMGDKGIQK-----IRGCSWVEVDGVVHEFLVGD 488
SA AAKI + + +K I CS E +G +H+F+ GD
Sbjct: 183 ----LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGD 230
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 39/173 (22%)
Query: 342 GCTHAGLVDEGRQFFN-SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP---- 396
GC ++GL+ +GR N S + + + R GQ +AH L S+
Sbjct: 75 GCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGV 134
Query: 397 ----------------MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440
+EP+ WG G K A+ L +L+ P
Sbjct: 135 STIFGGVDKNGAHLYMLEPSGSYWG--YKGAATGKGRQSAKAELEKLVDHHPEG------ 186
Query: 441 LSNIYSASHKWNDAAKIRSMMGDKGIQK-----IRGCSWVEVDGVVHEFLVGD 488
SA AAKI + + +K I CS E +G +H+F+ GD
Sbjct: 187 ----LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGD 234
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 39/173 (22%)
Query: 342 GCTHAGLVDEGRQFFN-SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP---- 396
GC ++GL+ +GR N S + + + R GQ +AH L S+
Sbjct: 74 GCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGV 133
Query: 397 ----------------MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440
+EP+ WG G K A+ L +L+ P
Sbjct: 134 STIFGGVDKNGAHLYMLEPSGSYWG--YKGAATGKGRQSAKAELEKLVDHHPEG------ 185
Query: 441 LSNIYSASHKWNDAAKIRSMMGDKGIQK-----IRGCSWVEVDGVVHEFLVGD 488
SA AAKI + + +K I CS E +G +H+F+ GD
Sbjct: 186 ----LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGD 233
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 39/173 (22%)
Query: 342 GCTHAGLVDEGRQFFN-SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP---- 396
GC ++GL+ +GR N S + + + R GQ +AH L S+
Sbjct: 75 GCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGV 134
Query: 397 ----------------MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440
+EP+ WG G K A+ L +L+ P
Sbjct: 135 STIFGGVDKNGAHLYMLEPSGSYWG--YKGAATGKGRQSAKAELEKLVDHHPEG------ 186
Query: 441 LSNIYSASHKWNDAAKIRSMMGDKGIQK-----IRGCSWVEVDGVVHEFLVGD 488
SA AAKI + + +K I CS E +G +H+F+ GD
Sbjct: 187 ----LSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGD 234
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 110 GNLEEAINMFRRLLHRGLKP--DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVF 167
GNLEEA+N+FR+LL L+P D+F + L Q +S+ H K R V+
Sbjct: 177 GNLEEALNLFRKLL-EDLRPFYDNFMDIDELCHVLQPSPISSK---HKTRLFPLKDR-VY 231
Query: 168 VATSLVDLYAKCGNM 182
+ ++ D +A +M
Sbjct: 232 LKLTIADPFACIASM 246
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 15/108 (13%)
Query: 215 EALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLI 274
E+ D++Y+M + Y T + S G+ +S ++ S P TL+
Sbjct: 160 ESCDLYYDM---SYSVAYSTFANISSENGQSGSDTASGISSDDVDLETSSSMPTRTATLL 216
Query: 275 DMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFG 322
D+Y+ CG M+ + A +SGL + V F F
Sbjct: 217 DLYSGCGGMSTG------------LCLGAALSGLKLETRWAVDFNSFA 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,494,379
Number of Sequences: 62578
Number of extensions: 780835
Number of successful extensions: 1721
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 14
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)