Query 044872
Match_columns 604
No_of_seqs 803 out of 4081
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044872.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044872hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-124 2E-129 1019.9 69.2 604 1-604 93-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 4E-121 8E-126 1015.5 68.3 599 1-602 259-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 3.1E-76 6.7E-81 655.7 48.0 584 1-598 57-678 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.6E-65 1.2E-69 554.7 57.1 441 28-471 435-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 6E-62 1.3E-66 531.0 55.1 528 26-583 366-912 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 2.8E-59 6E-64 508.0 44.5 487 94-599 85-583 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-28 4.8E-33 277.7 50.3 451 4-465 406-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-27 2.4E-32 272.1 51.2 451 3-464 371-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 8.2E-32 1.8E-36 216.0 8.4 106 471-594 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.4E-20 2.9E-25 215.3 49.3 450 4-465 121-701 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 1.1E-21 2.4E-26 190.7 32.0 443 6-461 59-516 (966)
12 PRK11447 cellulose synthase su 99.9 3.6E-20 7.8E-25 211.9 49.4 449 3-464 70-666 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 4.8E-21 1E-25 186.3 29.7 417 36-465 54-486 (966)
14 PRK09782 bacteriophage N4 rece 99.9 1.5E-18 3.3E-23 189.9 47.3 211 248-465 492-707 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.8E-18 1E-22 182.7 43.3 416 35-464 132-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 3.7E-19 8E-24 181.6 30.2 287 142-471 46-354 (389)
17 PRK11788 tetratricopeptide rep 99.9 3.3E-19 7E-24 182.0 28.4 282 41-361 46-346 (389)
18 PRK10049 pgaA outer membrane p 99.9 6.1E-17 1.3E-21 177.3 46.5 399 29-435 14-461 (765)
19 PRK15174 Vi polysaccharide exp 99.8 1.7E-17 3.6E-22 177.9 39.4 366 77-463 17-402 (656)
20 PRK09782 bacteriophage N4 rece 99.8 2.5E-16 5.5E-21 172.6 47.1 447 3-466 190-742 (987)
21 PRK10049 pgaA outer membrane p 99.8 7.3E-17 1.6E-21 176.7 42.6 395 63-465 13-457 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-16 2.9E-21 171.5 40.1 433 4-463 136-596 (615)
23 PRK14574 hmsH outer membrane p 99.8 7.7E-16 1.7E-20 165.4 44.5 421 6-435 45-518 (822)
24 PRK14574 hmsH outer membrane p 99.8 1.9E-15 4E-20 162.5 45.3 427 33-465 38-514 (822)
25 PRK15174 Vi polysaccharide exp 99.8 1.4E-16 3.1E-21 170.7 36.6 393 5-406 15-431 (656)
26 KOG2002 TPR-containing nuclear 99.7 3.1E-14 6.8E-19 146.6 35.1 167 297-465 563-746 (1018)
27 KOG2002 TPR-containing nuclear 99.7 1.2E-13 2.6E-18 142.4 39.3 367 94-466 268-677 (1018)
28 KOG4422 Uncharacterized conser 99.7 1.9E-13 4.1E-18 128.4 37.1 295 32-334 118-469 (625)
29 KOG2003 TPR repeat-containing 99.6 2.3E-13 5E-18 128.5 27.6 441 4-450 210-709 (840)
30 KOG0495 HAT repeat protein [RN 99.6 2.7E-11 5.9E-16 119.9 41.9 369 98-478 518-892 (913)
31 KOG2076 RNA polymerase III tra 99.6 1.8E-11 3.8E-16 125.9 40.1 450 8-459 152-729 (895)
32 KOG0495 HAT repeat protein [RN 99.6 2E-10 4.4E-15 113.8 42.7 421 41-474 387-854 (913)
33 PF13429 TPR_15: Tetratricopep 99.6 6.8E-15 1.5E-19 142.3 11.1 255 204-463 15-276 (280)
34 KOG2076 RNA polymerase III tra 99.6 1.3E-11 2.8E-16 126.9 33.8 326 145-474 153-522 (895)
35 KOG1915 Cell cycle control pro 99.6 8.4E-11 1.8E-15 112.3 36.4 402 66-474 74-510 (677)
36 KOG1915 Cell cycle control pro 99.6 1.5E-10 3.2E-15 110.6 37.8 395 7-409 85-548 (677)
37 KOG0547 Translocase of outer m 99.6 3.3E-11 7.2E-16 115.5 33.1 213 245-463 339-565 (606)
38 KOG2003 TPR repeat-containing 99.5 3.3E-12 7.2E-17 120.8 24.9 423 36-464 207-689 (840)
39 PRK10747 putative protoheme IX 99.5 1.1E-11 2.5E-16 125.4 30.1 287 109-430 97-390 (398)
40 KOG4422 Uncharacterized conser 99.5 1.3E-10 2.9E-15 109.6 33.9 348 29-395 206-587 (625)
41 KOG1126 DNA-binding cell divis 99.5 4.5E-12 9.7E-17 126.3 22.2 273 147-465 335-621 (638)
42 TIGR00540 hemY_coli hemY prote 99.5 3E-11 6.5E-16 123.0 29.2 291 107-429 95-398 (409)
43 PRK10747 putative protoheme IX 99.5 4.6E-11 9.9E-16 121.0 29.6 275 179-463 97-389 (398)
44 TIGR00540 hemY_coli hemY prote 99.5 2E-10 4.4E-15 117.0 33.0 218 241-463 162-398 (409)
45 KOG1126 DNA-binding cell divis 99.5 1E-11 2.2E-16 123.8 21.8 244 212-464 334-586 (638)
46 PF13429 TPR_15: Tetratricopep 99.4 5.9E-13 1.3E-17 128.8 11.6 248 5-256 18-272 (280)
47 KOG1155 Anaphase-promoting com 99.4 5.7E-09 1.2E-13 99.9 35.5 281 139-430 235-536 (559)
48 KOG1155 Anaphase-promoting com 99.4 3.1E-09 6.7E-14 101.7 33.1 252 204-463 234-494 (559)
49 KOG4318 Bicoid mRNA stability 99.4 2.8E-10 6.1E-15 116.6 27.7 439 16-474 11-603 (1088)
50 KOG1173 Anaphase-promoting com 99.4 4E-09 8.6E-14 103.5 33.7 257 200-463 247-517 (611)
51 KOG2047 mRNA splicing factor [ 99.4 2E-08 4.3E-13 99.9 38.2 445 7-464 114-687 (835)
52 COG3071 HemY Uncharacterized e 99.4 1.7E-09 3.6E-14 102.0 29.0 292 102-428 88-388 (400)
53 COG2956 Predicted N-acetylgluc 99.3 1.1E-09 2.4E-14 100.1 25.1 218 7-226 47-278 (389)
54 TIGR02521 type_IV_pilW type IV 99.3 2.7E-10 6E-15 106.9 22.7 197 266-463 30-231 (234)
55 COG2956 Predicted N-acetylgluc 99.3 1.8E-09 3.8E-14 98.7 25.5 267 109-410 48-324 (389)
56 KOG4318 Bicoid mRNA stability 99.3 9.2E-11 2E-15 120.1 17.6 272 218-529 11-283 (1088)
57 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.4E-16 84.2 6.1 50 94-143 1-50 (50)
58 KOG1174 Anaphase-promoting com 99.3 7.1E-08 1.5E-12 91.2 33.0 365 67-437 99-507 (564)
59 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.3E-16 83.5 6.3 50 195-244 1-50 (50)
60 KOG2376 Signal recognition par 99.3 8E-08 1.7E-12 95.0 34.3 434 3-461 20-517 (652)
61 KOG4162 Predicted calmodulin-b 99.2 7.2E-08 1.6E-12 98.2 34.3 397 60-464 318-783 (799)
62 COG3071 HemY Uncharacterized e 99.2 9.1E-09 2E-13 97.1 25.7 275 179-463 97-389 (400)
63 KOG1840 Kinesin light chain [C 99.2 4.7E-09 1E-13 106.1 24.8 232 232-463 199-478 (508)
64 KOG2047 mRNA splicing factor [ 99.2 3E-06 6.4E-11 84.9 42.3 439 6-455 149-714 (835)
65 PRK12370 invasion protein regu 99.2 4.7E-09 1E-13 111.2 24.8 260 196-465 255-536 (553)
66 KOG3785 Uncharacterized conser 99.2 3E-07 6.4E-12 85.3 32.2 410 40-474 32-497 (557)
67 KOG1840 Kinesin light chain [C 99.1 6.2E-08 1.3E-12 98.1 27.9 234 167-428 200-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.1 8.1E-09 1.8E-13 100.1 21.0 211 247-466 41-267 (296)
69 KOG0547 Translocase of outer m 99.1 9E-08 1.9E-12 92.5 26.9 186 275-466 334-534 (606)
70 KOG1173 Anaphase-promoting com 99.1 2.3E-07 5E-12 91.5 30.0 210 198-413 313-534 (611)
71 PRK12370 invasion protein regu 99.1 8.1E-09 1.8E-13 109.4 22.0 242 44-296 275-535 (553)
72 KOG1129 TPR repeat-containing 99.1 7.4E-09 1.6E-13 94.7 18.1 230 201-465 227-459 (478)
73 KOG3785 Uncharacterized conser 99.1 1E-07 2.3E-12 88.2 25.7 373 75-462 32-455 (557)
74 KOG1156 N-terminal acetyltrans 99.1 2E-06 4.3E-11 86.3 36.3 426 33-466 11-470 (700)
75 TIGR02521 type_IV_pilW type IV 99.1 4.2E-08 9.1E-13 91.9 23.3 199 197-430 31-232 (234)
76 COG3063 PilF Tfp pilus assembl 99.1 1.1E-08 2.5E-13 89.4 17.1 161 301-466 38-204 (250)
77 KOG4162 Predicted calmodulin-b 99.0 1.2E-06 2.7E-11 89.5 32.7 421 8-436 297-789 (799)
78 PF12569 NARP1: NMDA receptor- 99.0 3.5E-06 7.5E-11 86.6 36.0 254 201-460 198-516 (517)
79 KOG1129 TPR repeat-containing 99.0 2.6E-08 5.7E-13 91.2 16.3 226 101-360 228-456 (478)
80 PRK11189 lipoprotein NlpI; Pro 99.0 2.1E-07 4.6E-12 90.3 23.8 226 212-445 41-281 (296)
81 KOG1156 N-terminal acetyltrans 99.0 2.2E-05 4.8E-10 79.1 37.5 447 7-462 19-509 (700)
82 KOG1174 Anaphase-promoting com 98.9 1.1E-05 2.4E-10 76.8 32.0 262 195-464 230-500 (564)
83 KOG3616 Selective LIM binding 98.9 5.3E-06 1.2E-10 84.1 29.7 258 175-465 741-1025(1636)
84 PF04733 Coatomer_E: Coatomer 98.8 1.9E-07 4.2E-12 89.2 17.9 153 274-463 109-264 (290)
85 KOG0548 Molecular co-chaperone 98.8 2.9E-06 6.3E-11 83.5 25.4 216 236-465 228-456 (539)
86 KOG1125 TPR repeat-containing 98.8 1.1E-07 2.3E-12 94.1 15.4 218 243-463 296-526 (579)
87 COG3063 PilF Tfp pilus assembl 98.8 2.5E-06 5.3E-11 75.1 21.0 164 268-434 70-240 (250)
88 PF12569 NARP1: NMDA receptor- 98.8 2.2E-06 4.7E-11 88.1 24.4 259 174-466 12-293 (517)
89 KOG0985 Vesicle coat protein c 98.8 0.00023 5E-09 75.3 38.6 145 297-462 1103-1247(1666)
90 PRK04841 transcriptional regul 98.8 4.1E-05 8.9E-10 87.4 37.7 259 206-464 461-760 (903)
91 KOG0985 Vesicle coat protein c 98.8 3.4E-05 7.3E-10 81.2 32.5 115 197-322 1104-1218(1666)
92 cd05804 StaR_like StaR_like; a 98.8 1.3E-05 2.8E-10 80.7 29.5 256 205-465 51-337 (355)
93 KOG2376 Signal recognition par 98.8 0.00011 2.4E-09 73.4 34.3 407 36-463 18-486 (652)
94 KOG4340 Uncharacterized conser 98.8 6.6E-06 1.4E-10 74.8 23.7 412 25-463 5-442 (459)
95 KOG1127 TPR repeat-containing 98.7 1.4E-05 3.1E-10 84.0 28.3 173 285-462 801-994 (1238)
96 KOG3617 WD40 and TPR repeat-co 98.7 2.3E-05 5E-10 80.7 29.0 359 62-461 723-1171(1416)
97 KOG3616 Selective LIM binding 98.7 1.2E-05 2.5E-10 81.7 26.5 232 207-474 716-947 (1636)
98 KOG0624 dsRNA-activated protei 98.7 4.2E-05 9.1E-10 71.1 27.7 290 169-464 41-370 (504)
99 cd05804 StaR_like StaR_like; a 98.7 8.7E-05 1.9E-09 74.6 31.5 151 142-294 54-213 (355)
100 KOG1070 rRNA processing protei 98.6 3.5E-06 7.5E-11 91.4 20.5 198 266-467 1457-1666(1710)
101 TIGR03302 OM_YfiO outer membra 98.6 3.3E-06 7.1E-11 79.4 18.6 179 266-464 32-232 (235)
102 KOG1127 TPR repeat-containing 98.6 3E-05 6.4E-10 81.8 26.6 382 61-460 487-909 (1238)
103 PF12854 PPR_1: PPR repeat 98.6 1E-07 2.2E-12 58.0 4.2 33 161-193 2-34 (34)
104 KOG0548 Molecular co-chaperone 98.6 0.00041 8.9E-09 68.8 31.0 417 4-447 11-472 (539)
105 KOG3617 WD40 and TPR repeat-co 98.6 0.00028 6.1E-09 73.1 30.7 206 3-223 736-993 (1416)
106 PF04733 Coatomer_E: Coatomer 98.5 2.9E-06 6.3E-11 81.2 16.0 151 174-332 110-268 (290)
107 PRK04841 transcriptional regul 98.5 5.1E-05 1.1E-09 86.6 29.1 359 34-395 345-757 (903)
108 PRK10370 formate-dependent nit 98.5 4.6E-06 1E-10 75.3 16.1 118 346-465 52-174 (198)
109 KOG4340 Uncharacterized conser 98.5 8.1E-06 1.8E-10 74.3 16.5 304 134-461 13-336 (459)
110 PRK15359 type III secretion sy 98.5 3.4E-06 7.4E-11 72.0 13.8 121 319-446 14-137 (144)
111 PRK15359 type III secretion sy 98.5 1.8E-06 3.9E-11 73.7 11.8 106 355-465 15-122 (144)
112 KOG0624 dsRNA-activated protei 98.5 0.00035 7.7E-09 65.2 26.7 333 95-466 37-396 (504)
113 PRK15179 Vi polysaccharide bio 98.5 1.1E-05 2.3E-10 86.4 19.4 138 297-439 85-226 (694)
114 KOG1070 rRNA processing protei 98.5 4E-05 8.7E-10 83.5 22.8 233 16-250 1445-1689(1710)
115 PF12854 PPR_1: PPR repeat 98.5 3.5E-07 7.5E-12 55.7 4.5 33 262-294 2-34 (34)
116 KOG1125 TPR repeat-containing 98.4 2.8E-05 6.1E-10 77.4 19.4 215 141-360 295-525 (579)
117 PLN02789 farnesyltranstransfer 98.4 9E-05 1.9E-09 72.0 22.6 177 282-462 87-300 (320)
118 PRK15363 pathogenicity island 98.4 6.2E-06 1.3E-10 69.2 12.5 95 369-463 35-131 (157)
119 TIGR03302 OM_YfiO outer membra 98.4 2.6E-05 5.7E-10 73.2 17.7 181 231-432 32-234 (235)
120 PRK10370 formate-dependent nit 98.3 7.4E-05 1.6E-09 67.5 18.5 154 274-439 23-182 (198)
121 COG5010 TadD Flp pilus assembl 98.3 4.7E-05 1E-09 68.7 16.2 135 329-465 62-198 (257)
122 KOG1914 mRNA cleavage and poly 98.3 0.0047 1E-07 61.5 30.8 148 314-464 347-501 (656)
123 KOG1128 Uncharacterized conser 98.3 5.7E-05 1.2E-09 77.3 18.3 189 262-465 393-583 (777)
124 KOG1128 Uncharacterized conser 98.3 0.00016 3.4E-09 74.2 20.9 216 162-395 394-613 (777)
125 TIGR02552 LcrH_SycD type III s 98.2 2.4E-05 5.2E-10 66.3 12.0 101 365-465 12-115 (135)
126 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.9E-11 52.6 4.5 35 97-131 1-35 (35)
127 COG4783 Putative Zn-dependent 98.2 0.00029 6.3E-09 69.2 19.3 143 301-465 309-455 (484)
128 COG4783 Putative Zn-dependent 98.1 0.001 2.2E-08 65.5 23.0 120 342-463 315-436 (484)
129 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.7E-11 51.5 4.7 34 299-332 1-34 (35)
130 COG5010 TadD Flp pilus assembl 98.1 0.00024 5.3E-09 64.2 17.3 152 304-459 72-226 (257)
131 KOG3081 Vesicle coat complex C 98.1 0.0012 2.6E-08 59.8 21.4 82 381-462 185-269 (299)
132 PRK15179 Vi polysaccharide bio 98.1 0.00051 1.1E-08 73.7 22.2 143 263-409 82-230 (694)
133 KOG2053 Mitochondrial inherita 98.1 0.022 4.7E-07 60.5 37.9 218 5-227 19-256 (932)
134 PRK14720 transcript cleavage f 98.1 0.0004 8.7E-09 75.3 20.9 235 131-412 31-268 (906)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 7.3E-05 1.6E-09 74.1 14.2 123 335-462 171-295 (395)
136 PF13812 PPR_3: Pentatricopept 98.1 6.8E-06 1.5E-10 50.3 4.3 34 96-129 1-34 (34)
137 PRK14720 transcript cleavage f 98.1 0.0043 9.4E-08 67.6 27.7 277 94-436 29-312 (906)
138 KOG1914 mRNA cleavage and poly 98.0 0.021 4.5E-07 57.1 34.4 430 27-461 17-536 (656)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00022 4.8E-09 70.7 15.8 127 268-399 170-298 (395)
140 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.9E-10 49.0 4.4 34 197-230 1-34 (34)
141 PLN02789 farnesyltranstransfer 98.0 0.001 2.2E-08 64.7 19.6 186 273-463 43-249 (320)
142 TIGR02552 LcrH_SycD type III s 98.0 0.00025 5.4E-09 59.9 13.6 113 320-436 5-120 (135)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00035 7.6E-09 59.8 14.3 115 346-461 24-144 (145)
144 KOG3060 Uncharacterized conser 97.9 0.0031 6.7E-08 56.8 19.3 165 273-440 58-230 (289)
145 KOG3081 Vesicle coat complex C 97.9 0.004 8.6E-08 56.5 20.0 156 273-435 114-276 (299)
146 cd00189 TPR Tetratricopeptide 97.9 0.00017 3.6E-09 56.1 10.4 93 372-464 3-97 (100)
147 PF12895 Apc3: Anaphase-promot 97.9 2.1E-05 4.5E-10 60.2 4.8 78 382-460 2-83 (84)
148 KOG3060 Uncharacterized conser 97.8 0.0019 4.2E-08 58.1 17.0 160 302-465 56-221 (289)
149 PF13414 TPR_11: TPR repeat; P 97.8 5.4E-05 1.2E-09 55.3 6.1 64 400-463 2-66 (69)
150 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00027 5.9E-09 58.1 11.1 93 372-464 5-105 (119)
151 PF01535 PPR: PPR repeat; Int 97.8 3.1E-05 6.7E-10 46.2 3.7 31 97-127 1-31 (31)
152 PF13432 TPR_16: Tetratricopep 97.7 0.00011 2.3E-09 53.0 6.5 58 407-464 3-60 (65)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00054 1.2E-08 56.3 11.5 103 336-438 5-113 (119)
154 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.1E-09 45.1 3.8 31 299-329 1-31 (31)
155 PF09976 TPR_21: Tetratricopep 97.7 0.002 4.4E-08 55.1 15.0 114 311-427 24-144 (145)
156 PLN03088 SGT1, suppressor of 97.7 0.00056 1.2E-08 68.1 12.6 85 379-463 12-98 (356)
157 KOG0553 TPR repeat-containing 97.7 0.00048 1E-08 63.6 10.7 101 343-446 91-194 (304)
158 KOG0553 TPR repeat-containing 97.6 0.00012 2.7E-09 67.3 6.7 87 377-463 89-177 (304)
159 KOG2053 Mitochondrial inherita 97.6 0.13 2.9E-06 54.8 38.9 186 5-194 53-254 (932)
160 PRK02603 photosystem I assembl 97.6 0.00083 1.8E-08 59.4 11.6 81 370-450 36-121 (172)
161 CHL00033 ycf3 photosystem I as 97.6 0.00084 1.8E-08 59.2 11.2 94 369-462 35-140 (168)
162 COG4700 Uncharacterized protei 97.6 0.011 2.5E-07 50.6 16.6 132 329-463 85-221 (251)
163 PRK02603 photosystem I assembl 97.5 0.0028 6.1E-08 56.0 13.7 129 298-450 35-166 (172)
164 PRK10153 DNA-binding transcrip 97.5 0.004 8.6E-08 64.9 16.7 65 400-465 419-483 (517)
165 PF13432 TPR_16: Tetratricopep 97.5 0.00041 9E-09 49.9 6.7 61 375-435 3-65 (65)
166 PLN03088 SGT1, suppressor of 97.5 0.0017 3.6E-08 64.7 12.8 101 343-446 12-115 (356)
167 PF05843 Suf: Suppressor of fo 97.5 0.0032 6.9E-08 60.4 14.1 133 300-435 3-141 (280)
168 cd00189 TPR Tetratricopeptide 97.4 0.002 4.4E-08 49.8 10.5 60 373-432 38-99 (100)
169 PF14559 TPR_19: Tetratricopep 97.4 0.00024 5.1E-09 51.7 4.5 53 412-464 2-54 (68)
170 PRK15331 chaperone protein Sic 97.4 0.0019 4.2E-08 54.7 10.2 88 376-463 44-133 (165)
171 PF13371 TPR_9: Tetratricopept 97.4 0.00051 1.1E-08 50.7 6.2 57 409-465 3-59 (73)
172 COG4235 Cytochrome c biogenesi 97.3 0.0016 3.5E-08 60.5 10.1 101 366-466 153-258 (287)
173 PF04840 Vps16_C: Vps16, C-ter 97.3 0.19 4.1E-06 48.9 29.1 105 274-395 184-288 (319)
174 KOG0550 Molecular chaperone (D 97.2 0.0092 2E-07 57.6 13.9 267 172-466 55-352 (486)
175 PF05843 Suf: Suppressor of fo 97.2 0.0042 9.2E-08 59.6 12.1 129 334-464 2-136 (280)
176 PF13431 TPR_17: Tetratricopep 97.2 0.00024 5.3E-09 43.1 2.2 33 424-456 2-34 (34)
177 PRK10153 DNA-binding transcrip 97.2 0.014 3.1E-07 60.9 16.4 140 295-436 334-488 (517)
178 KOG2041 WD40 repeat protein [G 97.2 0.35 7.7E-06 50.2 25.0 202 27-257 689-903 (1189)
179 KOG1130 Predicted G-alpha GTPa 97.2 0.0034 7.4E-08 60.3 10.4 257 206-463 26-343 (639)
180 PF12895 Apc3: Anaphase-promot 97.2 0.0014 2.9E-08 50.0 6.6 80 311-394 2-83 (84)
181 PF14559 TPR_19: Tetratricopep 97.2 0.00073 1.6E-08 49.1 4.7 54 382-435 4-59 (68)
182 PF08579 RPM2: Mitochondrial r 97.1 0.0068 1.5E-07 47.5 9.6 78 303-381 30-116 (120)
183 PF14938 SNAP: Soluble NSF att 97.1 0.014 3.1E-07 56.2 14.4 27 200-226 158-184 (282)
184 PF13414 TPR_11: TPR repeat; P 97.1 0.0014 3E-08 47.7 5.6 64 369-432 3-69 (69)
185 PF10037 MRP-S27: Mitochondria 97.0 0.011 2.5E-07 59.1 13.1 116 128-243 63-184 (429)
186 PF14938 SNAP: Soluble NSF att 97.0 0.054 1.2E-06 52.2 17.7 120 342-461 123-263 (282)
187 PF12688 TPR_5: Tetratrico pep 97.0 0.0091 2E-07 48.5 10.3 86 377-462 9-102 (120)
188 PF08579 RPM2: Mitochondrial r 97.0 0.0082 1.8E-07 47.0 9.2 80 99-178 28-116 (120)
189 KOG2280 Vacuolar assembly/sort 97.0 0.64 1.4E-05 48.9 28.0 323 36-392 443-793 (829)
190 PRK10803 tol-pal system protei 96.9 0.0066 1.4E-07 57.2 10.1 94 371-464 145-246 (263)
191 PF10037 MRP-S27: Mitochondria 96.9 0.011 2.4E-07 59.2 11.9 118 62-179 63-186 (429)
192 PRK15363 pathogenicity island 96.9 0.025 5.5E-07 47.8 11.8 94 272-367 40-137 (157)
193 PF04840 Vps16_C: Vps16, C-ter 96.9 0.52 1.1E-05 45.9 24.9 112 334-462 178-289 (319)
194 CHL00033 ycf3 photosystem I as 96.8 0.024 5.3E-07 49.8 12.5 64 97-160 36-101 (168)
195 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0053 1.2E-07 60.8 8.7 63 401-463 75-140 (453)
196 PF07079 DUF1347: Protein of u 96.8 0.6 1.3E-05 46.2 38.3 189 269-463 300-523 (549)
197 PF09205 DUF1955: Domain of un 96.8 0.16 3.4E-06 41.2 15.1 140 309-467 13-152 (161)
198 COG3898 Uncharacterized membra 96.7 0.61 1.3E-05 45.2 26.6 302 81-395 69-389 (531)
199 KOG1538 Uncharacterized conser 96.7 0.1 2.2E-06 53.4 16.9 167 214-402 617-807 (1081)
200 COG4700 Uncharacterized protei 96.7 0.29 6.3E-06 42.3 17.1 121 266-391 88-215 (251)
201 PF13428 TPR_14: Tetratricopep 96.7 0.0032 6.9E-08 40.9 4.5 42 402-443 2-43 (44)
202 COG3898 Uncharacterized membra 96.7 0.64 1.4E-05 45.1 26.6 242 209-464 132-392 (531)
203 KOG2796 Uncharacterized conser 96.7 0.08 1.7E-06 48.2 14.3 236 96-339 69-325 (366)
204 PF13371 TPR_9: Tetratricopept 96.7 0.0057 1.2E-07 45.0 6.3 64 377-440 3-68 (73)
205 PF06239 ECSIT: Evolutionarily 96.7 0.016 3.4E-07 51.5 9.7 97 287-384 34-153 (228)
206 PRK10866 outer membrane biogen 96.7 0.1 2.3E-06 48.8 15.9 171 273-462 38-239 (243)
207 PF12688 TPR_5: Tetratrico pep 96.6 0.064 1.4E-06 43.6 12.1 91 203-293 7-101 (120)
208 KOG2796 Uncharacterized conser 96.6 0.072 1.6E-06 48.4 13.1 167 68-236 139-323 (366)
209 PRK10866 outer membrane biogen 96.6 0.63 1.4E-05 43.5 20.3 58 203-260 38-97 (243)
210 KOG1538 Uncharacterized conser 96.6 0.56 1.2E-05 48.4 20.6 223 33-319 601-825 (1081)
211 PRK10803 tol-pal system protei 96.5 0.049 1.1E-06 51.4 12.7 101 335-435 145-251 (263)
212 PF13281 DUF4071: Domain of un 96.5 0.44 9.5E-06 46.9 19.4 157 276-435 150-339 (374)
213 KOG2041 WD40 repeat protein [G 96.5 0.44 9.5E-06 49.5 19.6 170 274-465 767-953 (1189)
214 PF06239 ECSIT: Evolutionarily 96.5 0.021 4.5E-07 50.7 8.9 71 110-180 66-152 (228)
215 PF07079 DUF1347: Protein of u 96.4 1.1 2.5E-05 44.4 33.3 381 6-406 90-530 (549)
216 KOG0543 FKBP-type peptidyl-pro 96.3 0.06 1.3E-06 52.3 11.8 63 402-464 258-320 (397)
217 PF13424 TPR_12: Tetratricopep 96.3 0.0079 1.7E-07 45.0 4.8 61 403-463 7-74 (78)
218 PF13525 YfiO: Outer membrane 96.2 0.21 4.5E-06 45.4 14.7 141 304-464 11-170 (203)
219 KOG1130 Predicted G-alpha GTPa 96.1 0.28 6E-06 47.7 15.1 275 104-394 25-340 (639)
220 KOG0550 Molecular chaperone (D 96.1 0.34 7.4E-06 47.2 15.6 151 277-433 179-353 (486)
221 KOG1920 IkappaB kinase complex 96.1 1.1 2.4E-05 49.8 20.8 158 180-396 894-1053(1265)
222 PF13424 TPR_12: Tetratricopep 95.8 0.014 3.1E-07 43.5 4.4 59 371-429 7-74 (78)
223 PF03704 BTAD: Bacterial trans 95.8 0.043 9.2E-07 46.9 7.9 61 403-463 64-124 (146)
224 PF12921 ATP13: Mitochondrial 95.8 0.11 2.5E-06 42.6 9.6 47 364-410 47-97 (126)
225 KOG4555 TPR repeat-containing 95.7 0.11 2.3E-06 41.9 8.9 90 377-466 51-146 (175)
226 KOG2280 Vacuolar assembly/sort 95.7 3.7 7.9E-05 43.6 26.5 328 99-461 440-796 (829)
227 COG4235 Cytochrome c biogenesi 95.6 0.16 3.5E-06 47.6 11.2 96 130-226 155-256 (287)
228 PF13525 YfiO: Outer membrane 95.6 1.7 3.7E-05 39.4 18.9 47 340-386 148-195 (203)
229 COG0457 NrfG FOG: TPR repeat [ 95.5 1.9 4.2E-05 39.3 26.9 194 267-464 59-265 (291)
230 PF03704 BTAD: Bacterial trans 95.5 0.25 5.4E-06 42.1 11.4 69 301-371 65-138 (146)
231 KOG1585 Protein required for f 95.4 2 4.3E-05 39.1 18.2 88 371-459 152-251 (308)
232 KOG0543 FKBP-type peptidyl-pro 95.4 0.23 4.9E-06 48.5 11.7 94 371-464 259-355 (397)
233 PF13512 TPR_18: Tetratricopep 95.3 0.38 8.1E-06 40.1 11.2 58 379-436 20-82 (142)
234 PF12921 ATP13: Mitochondrial 95.3 0.19 4.1E-06 41.3 9.5 97 266-378 1-97 (126)
235 PF13512 TPR_18: Tetratricopep 95.2 0.56 1.2E-05 39.1 11.9 19 417-435 115-133 (142)
236 COG4105 ComL DNA uptake lipopr 95.2 2.5 5.4E-05 39.0 17.7 136 305-464 41-196 (254)
237 PRK11906 transcriptional regul 95.2 0.38 8.3E-06 48.2 12.8 64 400-463 337-400 (458)
238 smart00299 CLH Clathrin heavy 95.2 1.6 3.4E-05 36.8 15.4 88 31-122 8-95 (140)
239 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.14 3E-06 51.2 9.6 63 368-430 74-141 (453)
240 PRK11906 transcriptional regul 95.0 2 4.4E-05 43.2 17.2 159 299-461 252-433 (458)
241 COG1729 Uncharacterized protei 95.0 0.19 4.2E-06 46.5 9.4 82 381-464 153-244 (262)
242 KOG1258 mRNA processing protei 94.9 5.7 0.00012 41.2 30.1 182 266-450 296-490 (577)
243 KOG1941 Acetylcholine receptor 94.7 0.31 6.8E-06 46.6 10.0 126 336-461 125-272 (518)
244 PF04053 Coatomer_WDAD: Coatom 94.7 0.68 1.5E-05 47.4 13.4 153 7-191 273-427 (443)
245 COG3118 Thioredoxin domain-con 94.5 2 4.4E-05 40.3 14.8 121 342-465 143-266 (304)
246 KOG3941 Intermediate in Toll s 94.4 0.31 6.6E-06 45.0 9.0 101 284-385 51-174 (406)
247 PF00515 TPR_1: Tetratricopept 94.4 0.082 1.8E-06 31.8 3.9 32 402-433 2-33 (34)
248 smart00299 CLH Clathrin heavy 94.2 3 6.4E-05 35.1 15.1 43 237-280 12-54 (140)
249 COG3118 Thioredoxin domain-con 94.2 4.5 9.8E-05 38.1 16.2 153 306-461 142-299 (304)
250 COG1729 Uncharacterized protei 94.1 0.47 1E-05 44.0 9.9 93 345-437 153-251 (262)
251 PF04184 ST7: ST7 protein; In 94.0 3.2 6.9E-05 42.0 15.9 99 337-435 263-380 (539)
252 PF07719 TPR_2: Tetratricopept 94.0 0.14 3.1E-06 30.6 4.5 32 403-434 3-34 (34)
253 PF10300 DUF3808: Protein of u 94.0 2.9 6.4E-05 43.4 16.8 158 303-463 193-375 (468)
254 COG4785 NlpI Lipoprotein NlpI, 94.0 2.9 6.2E-05 37.4 13.7 161 299-466 100-268 (297)
255 KOG2114 Vacuolar assembly/sort 93.9 11 0.00024 40.7 23.3 52 376-428 712-763 (933)
256 PF13281 DUF4071: Domain of un 93.9 4 8.6E-05 40.4 16.3 72 171-242 146-227 (374)
257 COG5107 RNA14 Pre-mRNA 3'-end 93.8 7.9 0.00017 38.6 31.2 127 335-463 399-530 (660)
258 KOG3941 Intermediate in Toll s 93.8 0.46 1E-05 43.9 8.9 98 83-180 52-172 (406)
259 COG0457 NrfG FOG: TPR repeat [ 93.8 5.1 0.00011 36.4 26.2 193 237-433 64-268 (291)
260 PF04053 Coatomer_WDAD: Coatom 93.7 3.2 6.9E-05 42.6 15.9 155 106-292 271-427 (443)
261 KOG2610 Uncharacterized conser 93.4 2.3 5E-05 40.5 13.0 152 279-435 115-283 (491)
262 PF04184 ST7: ST7 protein; In 93.4 3.3 7.2E-05 41.9 14.8 147 311-469 181-329 (539)
263 COG4105 ComL DNA uptake lipopr 93.2 6.9 0.00015 36.2 19.2 180 265-464 33-233 (254)
264 PF10300 DUF3808: Protein of u 93.0 1.5 3.3E-05 45.5 12.6 174 46-225 173-375 (468)
265 KOG4555 TPR repeat-containing 92.8 0.9 1.9E-05 36.8 8.0 86 40-126 53-145 (175)
266 KOG4234 TPR repeat-containing 92.4 0.5 1.1E-05 41.4 6.7 89 378-466 104-199 (271)
267 PF07035 Mic1: Colon cancer-as 92.1 4.4 9.5E-05 35.1 12.2 136 15-161 14-150 (167)
268 PF13176 TPR_7: Tetratricopept 92.1 0.28 6E-06 30.0 3.7 26 437-462 1-26 (36)
269 PRK15331 chaperone protein Sic 91.9 0.77 1.7E-05 39.2 7.2 84 40-124 47-133 (165)
270 PF09613 HrpB1_HrpK: Bacterial 91.6 6.6 0.00014 33.5 12.4 89 341-432 18-108 (160)
271 PF04097 Nic96: Nup93/Nic96; 91.4 24 0.00052 38.2 20.4 47 97-144 112-158 (613)
272 PF02259 FAT: FAT domain; Int 91.4 16 0.00035 36.3 19.0 147 297-446 145-303 (352)
273 PRK11619 lytic murein transgly 91.4 25 0.00053 38.3 30.9 115 311-428 254-373 (644)
274 PF08631 SPO22: Meiosis protei 91.2 15 0.00032 35.3 20.4 60 167-226 85-150 (278)
275 KOG2610 Uncharacterized conser 91.2 2.4 5.2E-05 40.4 10.2 159 310-471 115-283 (491)
276 KOG1258 mRNA processing protei 90.9 22 0.00049 37.0 26.3 120 333-456 297-421 (577)
277 PF13181 TPR_8: Tetratricopept 90.9 0.4 8.7E-06 28.6 3.5 31 403-433 3-33 (34)
278 KOG1941 Acetylcholine receptor 90.9 9.6 0.00021 37.0 13.9 126 304-429 128-274 (518)
279 PF13176 TPR_7: Tetratricopept 90.6 0.44 9.5E-06 29.1 3.4 27 403-429 1-27 (36)
280 COG5107 RNA14 Pre-mRNA 3'-end 90.5 21 0.00045 35.9 29.7 132 299-434 398-535 (660)
281 PF02259 FAT: FAT domain; Int 90.2 15 0.00032 36.6 16.3 67 400-466 145-215 (352)
282 KOG1920 IkappaB kinase complex 90.2 38 0.00082 38.5 23.0 117 272-399 913-1029(1265)
283 KOG2066 Vacuolar assembly/sort 90.0 31 0.00068 37.2 24.2 23 202-224 510-532 (846)
284 PF09205 DUF1955: Domain of un 89.9 9.8 0.00021 31.2 11.4 63 99-162 89-151 (161)
285 COG3629 DnrI DNA-binding trans 89.7 1.8 3.8E-05 40.9 8.2 61 403-463 155-215 (280)
286 PF09613 HrpB1_HrpK: Bacterial 89.4 1.7 3.6E-05 37.1 7.0 51 413-463 22-72 (160)
287 PF13170 DUF4003: Protein of u 89.4 8 0.00017 37.3 12.7 60 214-273 160-223 (297)
288 PF07035 Mic1: Colon cancer-as 89.3 12 0.00025 32.5 12.2 133 116-260 14-148 (167)
289 TIGR02561 HrpB1_HrpK type III 89.0 1.6 3.6E-05 36.5 6.6 53 413-465 22-74 (153)
290 PRK09687 putative lyase; Provi 89.0 22 0.00048 34.1 26.0 74 265-343 204-277 (280)
291 PF13428 TPR_14: Tetratricopep 88.9 1.1 2.4E-05 28.8 4.5 32 300-333 3-34 (44)
292 PF08631 SPO22: Meiosis protei 88.9 22 0.00048 34.0 25.3 17 411-427 256-272 (278)
293 COG3629 DnrI DNA-binding trans 88.9 2.8 6.1E-05 39.6 8.9 76 267-342 153-236 (280)
294 PRK09687 putative lyase; Provi 88.7 23 0.0005 33.9 25.3 80 266-348 141-221 (280)
295 PF13170 DUF4003: Protein of u 88.4 11 0.00025 36.3 12.9 62 314-376 159-224 (297)
296 KOG0890 Protein kinase of the 87.9 79 0.0017 39.1 29.4 279 169-466 1423-1733(2382)
297 KOG1585 Protein required for f 87.8 22 0.00048 32.7 16.3 46 167-224 92-137 (308)
298 PF10602 RPN7: 26S proteasome 87.8 12 0.00027 32.9 11.9 15 381-395 125-139 (177)
299 COG4649 Uncharacterized protei 87.3 14 0.0003 31.9 11.0 120 309-429 69-195 (221)
300 PF00515 TPR_1: Tetratricopept 87.1 1 2.2E-05 26.9 3.3 31 300-332 3-33 (34)
301 PF02284 COX5A: Cytochrome c o 86.9 4.9 0.00011 31.1 7.4 60 316-377 28-87 (108)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 86.7 5.1 0.00011 30.7 7.3 63 313-377 22-84 (103)
303 KOG4648 Uncharacterized conser 86.5 2.5 5.4E-05 40.4 6.9 50 306-357 105-155 (536)
304 PF00637 Clathrin: Region in C 86.5 0.9 1.9E-05 38.5 3.9 112 36-147 13-141 (143)
305 COG4649 Uncharacterized protei 86.3 13 0.00029 32.1 10.3 124 107-230 69-200 (221)
306 PF07719 TPR_2: Tetratricopept 85.9 1.4 3E-05 26.1 3.5 29 436-464 2-30 (34)
307 PF10602 RPN7: 26S proteasome 85.6 11 0.00023 33.3 10.3 95 268-362 37-142 (177)
308 KOG4648 Uncharacterized conser 85.1 1.8 4E-05 41.2 5.3 111 341-458 105-218 (536)
309 KOG2114 Vacuolar assembly/sort 84.9 65 0.0014 35.3 25.0 52 407-461 711-762 (933)
310 PF14853 Fis1_TPR_C: Fis1 C-te 84.7 6.7 0.00015 26.5 6.6 51 437-513 3-53 (53)
311 PF07721 TPR_4: Tetratricopept 84.4 1.5 3.2E-05 24.4 2.8 24 436-459 2-25 (26)
312 PF13431 TPR_17: Tetratricopep 84.2 2 4.3E-05 25.8 3.5 30 156-186 4-33 (34)
313 PF14853 Fis1_TPR_C: Fis1 C-te 83.8 2.8 6.1E-05 28.3 4.4 33 406-438 6-38 (53)
314 PF13374 TPR_10: Tetratricopep 83.3 2.1 4.6E-05 26.7 3.7 28 436-463 3-30 (42)
315 PF00637 Clathrin: Region in C 83.2 0.8 1.7E-05 38.8 2.1 84 137-223 13-96 (143)
316 PRK15180 Vi polysaccharide bio 82.8 19 0.00042 36.3 11.4 85 379-463 333-419 (831)
317 KOG3364 Membrane protein invol 82.2 7.7 0.00017 31.9 7.0 49 415-463 49-99 (149)
318 PF13174 TPR_6: Tetratricopept 81.7 2.5 5.4E-05 24.7 3.4 25 409-433 8-32 (33)
319 TIGR02561 HrpB1_HrpK type III 81.5 31 0.00068 29.1 11.5 35 175-209 53-88 (153)
320 PF13181 TPR_8: Tetratricopept 81.5 3.2 6.9E-05 24.5 3.8 28 436-463 2-29 (34)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 81.4 11 0.00025 28.9 7.2 58 114-173 25-83 (103)
322 KOG1586 Protein required for f 81.1 44 0.00096 30.6 13.5 89 375-463 119-223 (288)
323 PF11207 DUF2989: Protein of u 80.8 14 0.0003 33.0 8.8 73 113-186 123-198 (203)
324 PRK15180 Vi polysaccharide bio 80.6 13 0.00028 37.4 9.4 119 311-433 302-423 (831)
325 TIGR02508 type_III_yscG type I 80.4 25 0.00054 27.3 9.0 87 248-338 21-107 (115)
326 smart00028 TPR Tetratricopepti 80.4 3.8 8.2E-05 23.0 4.0 31 403-433 3-33 (34)
327 PF06552 TOM20_plant: Plant sp 79.6 21 0.00046 31.1 9.3 44 417-467 96-139 (186)
328 COG2976 Uncharacterized protei 79.5 45 0.00097 29.6 13.9 90 340-433 96-191 (207)
329 PF13174 TPR_6: Tetratricopept 79.5 2.5 5.4E-05 24.7 2.8 28 437-464 2-29 (33)
330 KOG1464 COP9 signalosome, subu 79.1 56 0.0012 30.5 15.9 229 180-414 41-317 (440)
331 PRK10941 hypothetical protein; 78.9 10 0.00022 36.0 8.0 62 403-464 183-244 (269)
332 KOG4570 Uncharacterized conser 78.3 14 0.00031 35.1 8.4 96 262-361 59-163 (418)
333 KOG4570 Uncharacterized conser 77.9 16 0.00035 34.8 8.6 99 62-161 61-165 (418)
334 KOG4642 Chaperone-dependent E3 77.8 8.5 0.00018 35.1 6.6 81 383-463 24-106 (284)
335 KOG2300 Uncharacterized conser 77.3 90 0.002 32.0 25.0 83 109-191 60-152 (629)
336 KOG0276 Vesicle coat complex C 77.2 23 0.0005 37.0 10.2 44 77-122 649-692 (794)
337 PF11207 DUF2989: Protein of u 76.9 15 0.00033 32.7 7.9 74 381-455 119-198 (203)
338 PF02284 COX5A: Cytochrome c o 76.6 12 0.00027 29.0 6.3 59 13-72 28-86 (108)
339 PF13374 TPR_10: Tetratricopep 76.3 5.3 0.00012 24.8 3.9 27 300-326 4-30 (42)
340 TIGR02508 type_III_yscG type I 76.2 34 0.00074 26.6 8.7 85 46-134 21-105 (115)
341 PHA02875 ankyrin repeat protei 76.1 96 0.0021 31.7 17.8 206 6-232 10-230 (413)
342 KOG4234 TPR repeat-containing 76.0 33 0.00072 30.5 9.4 59 376-434 141-201 (271)
343 PF07721 TPR_4: Tetratricopept 75.2 6 0.00013 21.9 3.4 21 271-291 5-25 (26)
344 KOG1308 Hsp70-interacting prot 75.2 1.9 4E-05 41.3 2.0 87 382-468 127-215 (377)
345 COG3947 Response regulator con 73.7 13 0.00027 35.1 6.8 59 405-463 283-341 (361)
346 PF06552 TOM20_plant: Plant sp 73.7 18 0.00039 31.6 7.3 46 417-462 51-100 (186)
347 PF04097 Nic96: Nup93/Nic96; 72.7 1.2E+02 0.0025 33.1 15.1 66 167-233 113-188 (613)
348 KOG0276 Vesicle coat complex C 72.6 42 0.0009 35.2 10.6 102 175-293 646-747 (794)
349 COG1747 Uncharacterized N-term 72.2 1.3E+02 0.0027 31.2 22.2 160 268-434 67-238 (711)
350 PF14561 TPR_20: Tetratricopep 71.6 10 0.00022 29.0 5.0 45 421-465 8-52 (90)
351 PF04910 Tcf25: Transcriptiona 71.2 1.2E+02 0.0025 30.4 14.9 64 400-463 99-167 (360)
352 KOG2396 HAT (Half-A-TPR) repea 69.9 1.4E+02 0.003 30.8 23.4 421 4-438 113-568 (568)
353 KOG4279 Serine/threonine prote 69.9 92 0.002 33.7 12.6 102 307-435 296-400 (1226)
354 PRK13800 putative oxidoreducta 66.7 2.4E+02 0.0053 32.4 26.7 254 86-361 625-880 (897)
355 PF10579 Rapsyn_N: Rapsyn N-te 66.3 18 0.00038 26.7 4.9 47 345-391 18-65 (80)
356 COG2976 Uncharacterized protei 66.2 97 0.0021 27.6 14.5 88 241-328 98-189 (207)
357 COG4455 ImpE Protein of avirul 66.2 25 0.00055 31.7 6.7 64 372-435 4-69 (273)
358 KOG4507 Uncharacterized conser 65.9 16 0.00036 37.8 6.3 97 346-445 620-720 (886)
359 PF13934 ELYS: Nuclear pore co 65.9 1.1E+02 0.0024 28.3 11.4 95 310-413 90-184 (226)
360 TIGR03504 FimV_Cterm FimV C-te 65.8 10 0.00022 24.4 3.3 27 439-465 3-29 (44)
361 PHA02875 ankyrin repeat protei 65.2 1.4E+02 0.0031 30.4 13.5 139 41-192 10-158 (413)
362 PF09986 DUF2225: Uncharacteri 65.2 43 0.00093 30.6 8.5 63 403-465 120-195 (214)
363 KOG4077 Cytochrome c oxidase, 64.4 49 0.0011 27.0 7.4 60 316-377 67-126 (149)
364 PF09670 Cas_Cas02710: CRISPR- 63.7 1.2E+02 0.0026 30.6 12.2 52 309-361 142-197 (379)
365 PRK13342 recombination factor 62.7 1.6E+02 0.0035 30.1 13.2 35 98-132 229-266 (413)
366 PF14863 Alkyl_sulf_dimr: Alky 62.5 37 0.0008 28.5 6.9 63 385-450 57-119 (141)
367 PRK13342 recombination factor 62.0 1.9E+02 0.0042 29.6 15.3 114 113-244 154-277 (413)
368 smart00386 HAT HAT (Half-A-TPR 61.8 15 0.00033 21.0 3.5 29 415-443 1-29 (33)
369 KOG0545 Aryl-hydrocarbon recep 60.5 62 0.0013 29.9 8.2 55 410-464 239-293 (329)
370 PF04190 DUF410: Protein of un 60.4 1.5E+02 0.0034 28.0 16.2 37 164-200 88-124 (260)
371 COG4785 NlpI Lipoprotein NlpI, 60.3 1.4E+02 0.0029 27.3 15.4 161 97-264 100-269 (297)
372 PF10579 Rapsyn_N: Rapsyn N-te 60.2 33 0.00072 25.3 5.3 47 310-356 18-66 (80)
373 PF04190 DUF410: Protein of un 60.1 1.6E+02 0.0034 27.9 15.2 30 265-294 88-117 (260)
374 PF09477 Type_III_YscG: Bacter 60.0 85 0.0018 24.8 9.0 87 145-235 20-106 (116)
375 PF13762 MNE1: Mitochondrial s 59.5 1.1E+02 0.0024 25.9 9.3 77 68-144 42-128 (145)
376 TIGR03504 FimV_Cterm FimV C-te 58.9 25 0.00055 22.6 4.1 24 304-327 5-28 (44)
377 KOG0890 Protein kinase of the 58.8 4.7E+02 0.01 33.0 29.7 159 36-203 1389-1552(2382)
378 KOG0376 Serine-threonine phosp 58.1 20 0.00044 36.3 5.3 85 379-463 14-100 (476)
379 KOG0292 Vesicle coat complex C 57.9 17 0.00036 39.7 4.9 97 311-431 606-702 (1202)
380 PF10345 Cohesin_load: Cohesin 57.4 2.9E+02 0.0062 30.1 32.5 179 12-191 38-250 (608)
381 PF11846 DUF3366: Domain of un 57.0 38 0.00083 30.3 6.7 35 398-432 141-175 (193)
382 PF07163 Pex26: Pex26 protein; 56.8 1.1E+02 0.0023 29.1 9.3 85 103-189 90-181 (309)
383 KOG3364 Membrane protein invol 56.6 67 0.0014 26.7 7.1 31 406-436 76-106 (149)
384 KOG1550 Extracellular protein 55.9 2.9E+02 0.0062 29.7 21.4 78 384-464 454-538 (552)
385 PF10366 Vps39_1: Vacuolar sor 55.3 91 0.002 24.8 7.7 28 198-225 40-67 (108)
386 PRK11619 lytic murein transgly 55.0 3.2E+02 0.0069 29.9 37.2 382 68-468 102-509 (644)
387 PF12862 Apc5: Anaphase-promot 55.0 35 0.00077 26.2 5.3 53 411-463 8-69 (94)
388 PF08311 Mad3_BUB1_I: Mad3/BUB 54.8 1.1E+02 0.0023 25.2 8.4 42 419-460 81-124 (126)
389 PRK12798 chemotaxis protein; R 54.6 2.5E+02 0.0053 28.5 21.5 181 280-463 125-323 (421)
390 COG4976 Predicted methyltransf 53.7 27 0.00058 31.8 4.8 57 378-434 4-62 (287)
391 PRK13800 putative oxidoreducta 53.4 4.1E+02 0.0088 30.6 24.4 255 187-463 625-880 (897)
392 KOG3807 Predicted membrane pro 53.4 1.7E+02 0.0037 28.4 10.2 49 307-357 284-335 (556)
393 PF07163 Pex26: Pex26 protein; 53.3 1.7E+02 0.0036 27.8 9.9 85 204-290 90-181 (309)
394 KOG1586 Protein required for f 53.1 1.9E+02 0.0041 26.7 18.8 56 380-435 165-229 (288)
395 PF11846 DUF3366: Domain of un 53.1 54 0.0012 29.3 7.0 51 345-395 120-170 (193)
396 PF06957 COPI_C: Coatomer (COP 53.0 80 0.0017 32.1 8.6 43 392-434 289-333 (422)
397 PF11768 DUF3312: Protein of u 51.5 2.3E+02 0.005 29.8 11.6 24 271-294 412-435 (545)
398 cd08819 CARD_MDA5_2 Caspase ac 51.4 1.1E+02 0.0023 23.3 7.1 39 279-318 48-86 (88)
399 PF10366 Vps39_1: Vacuolar sor 51.2 1E+02 0.0022 24.5 7.4 28 97-124 40-67 (108)
400 COG3947 Response regulator con 51.0 2.3E+02 0.005 27.1 12.3 66 168-233 281-354 (361)
401 PF13762 MNE1: Mitochondrial s 50.8 1.5E+02 0.0033 25.0 10.1 50 297-346 78-128 (145)
402 KOG2066 Vacuolar assembly/sort 49.8 3.9E+02 0.0085 29.4 28.1 31 167-197 506-536 (846)
403 PF07720 TPR_3: Tetratricopept 49.7 53 0.0012 20.0 4.3 18 406-423 6-23 (36)
404 PRK10941 hypothetical protein; 48.8 1.2E+02 0.0025 28.9 8.7 66 373-438 185-252 (269)
405 KOG0686 COP9 signalosome, subu 48.7 3E+02 0.0065 27.7 13.3 163 268-464 151-333 (466)
406 COG5159 RPN6 26S proteasome re 47.5 2.5E+02 0.0054 26.8 10.1 132 205-336 11-167 (421)
407 KOG4077 Cytochrome c oxidase, 46.9 1E+02 0.0022 25.3 6.5 46 114-159 67-112 (149)
408 COG2909 MalT ATP-dependent tra 46.4 4.7E+02 0.01 29.3 24.3 355 5-365 357-767 (894)
409 PF13929 mRNA_stabil: mRNA sta 46.4 2.7E+02 0.0059 26.6 15.2 59 263-321 198-261 (292)
410 KOG3824 Huntingtin interacting 46.3 74 0.0016 30.4 6.6 51 411-461 126-176 (472)
411 PF14427 Pput2613-deam: Pput_2 45.3 96 0.0021 24.4 6.0 57 532-588 46-102 (118)
412 PF11663 Toxin_YhaV: Toxin wit 45.0 23 0.0005 29.2 2.8 33 309-343 106-138 (140)
413 PF11663 Toxin_YhaV: Toxin wit 44.8 28 0.0006 28.7 3.3 32 108-141 107-138 (140)
414 COG4455 ImpE Protein of avirul 44.2 2.5E+02 0.0055 25.6 11.6 58 301-360 4-62 (273)
415 COG4976 Predicted methyltransf 44.0 50 0.0011 30.1 5.0 56 411-466 5-60 (287)
416 PF04910 Tcf25: Transcriptiona 43.2 3.6E+02 0.0077 27.0 16.9 89 340-432 110-224 (360)
417 PF11848 DUF3368: Domain of un 43.0 95 0.0021 20.3 5.2 33 309-341 13-45 (48)
418 PF12968 DUF3856: Domain of Un 42.2 1.8E+02 0.004 23.6 7.3 61 402-462 56-127 (144)
419 KOG0403 Neoplastic transformat 42.2 3.9E+02 0.0086 27.3 17.7 58 372-429 512-571 (645)
420 PF07064 RIC1: RIC1; InterPro 41.8 3.1E+02 0.0067 25.9 12.7 22 101-122 184-205 (258)
421 cd08819 CARD_MDA5_2 Caspase ac 41.6 1.5E+02 0.0034 22.4 6.5 65 49-115 21-85 (88)
422 KOG0551 Hsp90 co-chaperone CNS 41.6 1.5E+02 0.0033 28.9 8.0 88 374-461 86-179 (390)
423 KOG4642 Chaperone-dependent E3 41.5 3E+02 0.0064 25.6 9.5 78 280-359 23-104 (284)
424 cd00280 TRFH Telomeric Repeat 41.2 2.1E+02 0.0046 25.3 8.1 27 408-435 118-144 (200)
425 COG4941 Predicted RNA polymera 40.8 3.6E+02 0.0078 26.4 11.6 128 296-436 262-400 (415)
426 PF14561 TPR_20: Tetratricopep 40.7 1.6E+02 0.0035 22.4 8.4 62 400-461 21-85 (90)
427 PRK10564 maltose regulon perip 40.7 56 0.0012 31.3 5.1 41 300-340 259-299 (303)
428 PHA03100 ankyrin repeat protei 40.6 4.4E+02 0.0096 27.4 16.0 239 35-292 37-305 (480)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 40.1 2.1E+02 0.0045 23.5 8.2 43 250-292 81-124 (126)
430 PF12862 Apc5: Anaphase-promot 40.0 1E+02 0.0022 23.7 5.8 25 406-430 46-70 (94)
431 PF09477 Type_III_YscG: Bacter 39.1 2E+02 0.0043 22.9 10.6 87 246-336 20-106 (116)
432 PF11848 DUF3368: Domain of un 38.9 1.1E+02 0.0024 20.0 4.9 32 107-138 13-44 (48)
433 PRK10564 maltose regulon perip 38.9 54 0.0012 31.4 4.7 36 99-134 260-295 (303)
434 PF14689 SPOB_a: Sensor_kinase 38.4 67 0.0015 22.4 4.1 27 334-360 24-50 (62)
435 KOG3824 Huntingtin interacting 38.1 46 0.001 31.7 4.0 56 381-436 128-185 (472)
436 KOG4279 Serine/threonine prote 37.8 2.1E+02 0.0045 31.2 9.0 99 300-401 203-320 (1226)
437 PF15469 Sec5: Exocyst complex 37.3 2.9E+02 0.0063 24.3 10.6 24 338-361 91-114 (182)
438 PF12069 DUF3549: Protein of u 36.6 4.3E+02 0.0093 26.1 12.5 87 272-361 171-258 (340)
439 KOG1498 26S proteasome regulat 36.6 4.5E+02 0.0099 26.4 15.5 102 374-479 136-256 (439)
440 COG0735 Fur Fe2+/Zn2+ uptake r 36.0 1.5E+02 0.0032 25.1 6.6 60 121-181 11-70 (145)
441 PF07575 Nucleopor_Nup85: Nup8 35.5 5.9E+02 0.013 27.4 15.9 159 297-477 371-535 (566)
442 PRK13184 pknD serine/threonine 35.4 7.5E+02 0.016 28.5 20.8 127 335-463 690-832 (932)
443 COG5159 RPN6 26S proteasome re 35.1 4.1E+02 0.0089 25.4 13.6 134 102-235 9-167 (421)
444 KOG0403 Neoplastic transformat 35.0 5.1E+02 0.011 26.5 16.6 57 272-328 514-573 (645)
445 KOG1550 Extracellular protein 34.9 6E+02 0.013 27.3 21.1 53 5-60 259-323 (552)
446 PF14689 SPOB_a: Sensor_kinase 34.4 66 0.0014 22.5 3.5 24 303-326 28-51 (62)
447 PF08225 Antimicrobial19: Pseu 34.3 28 0.00062 17.9 1.2 11 566-576 11-21 (23)
448 COG1747 Uncharacterized N-term 34.3 5.7E+02 0.012 26.8 25.2 157 198-361 67-233 (711)
449 PRK11639 zinc uptake transcrip 34.3 1.4E+02 0.003 26.1 6.3 41 102-142 31-71 (169)
450 PF11838 ERAP1_C: ERAP1-like C 34.2 4.4E+02 0.0096 25.5 17.0 86 345-430 142-230 (324)
451 TIGR02270 conserved hypothetic 34.1 5.3E+02 0.011 26.4 23.2 237 37-296 45-281 (410)
452 COG5191 Uncharacterized conser 33.8 90 0.002 29.9 5.2 75 367-441 105-182 (435)
453 KOG0687 26S proteasome regulat 33.5 4.7E+02 0.01 25.6 13.2 23 336-358 107-129 (393)
454 KOG2422 Uncharacterized conser 33.0 6.3E+02 0.014 26.9 12.3 53 410-462 351-405 (665)
455 PF15161 Neuropep_like: Neurop 33.0 27 0.00058 23.4 1.2 18 559-577 11-28 (65)
456 KOG1464 COP9 signalosome, subu 32.9 4.3E+02 0.0093 25.0 16.9 181 209-389 39-251 (440)
457 PF02847 MA3: MA3 domain; Int 32.8 1.2E+02 0.0026 24.0 5.5 21 203-223 8-28 (113)
458 KOG2659 LisH motif-containing 32.7 4E+02 0.0086 24.5 11.0 17 379-395 74-90 (228)
459 KOG4814 Uncharacterized conser 32.1 5.2E+02 0.011 27.9 10.6 85 380-464 365-457 (872)
460 KOG4507 Uncharacterized conser 31.5 1.8E+02 0.0038 30.8 7.1 133 330-465 568-706 (886)
461 PF11525 CopK: Copper resistan 31.4 22 0.00048 25.1 0.7 22 580-601 8-29 (73)
462 TIGR02710 CRISPR-associated pr 30.7 5.7E+02 0.012 25.8 11.7 25 308-332 140-164 (380)
463 PF14669 Asp_Glu_race_2: Putat 30.4 4E+02 0.0086 23.8 14.9 93 190-292 100-206 (233)
464 KOG0991 Replication factor C, 29.9 4.6E+02 0.0099 24.4 10.1 100 237-339 164-279 (333)
465 PF10345 Cohesin_load: Cohesin 29.6 7.6E+02 0.017 26.9 30.0 48 346-393 374-428 (608)
466 COG2912 Uncharacterized conser 29.3 1.9E+02 0.0042 27.3 6.6 59 406-464 186-244 (269)
467 smart00544 MA3 Domain in DAP-5 29.2 2.9E+02 0.0062 21.8 7.5 23 101-123 7-29 (113)
468 TIGR02270 conserved hypothetic 28.9 6.4E+02 0.014 25.8 25.1 26 371-396 254-279 (410)
469 smart00544 MA3 Domain in DAP-5 28.9 2.9E+02 0.0063 21.8 8.7 23 202-224 7-29 (113)
470 smart00777 Mad3_BUB1_I Mad3/BU 28.9 3.3E+02 0.0071 22.4 8.1 40 420-459 82-123 (125)
471 cd00280 TRFH Telomeric Repeat 28.2 3.2E+02 0.0069 24.2 7.2 32 376-407 118-149 (200)
472 KOG0376 Serine-threonine phosp 27.9 1.1E+02 0.0025 31.2 5.2 56 410-465 13-68 (476)
473 PF12796 Ank_2: Ankyrin repeat 27.6 2.5E+02 0.0055 20.7 6.6 18 73-90 31-48 (89)
474 KOG1524 WD40 repeat-containing 27.5 3E+02 0.0066 28.6 7.9 88 369-459 573-668 (737)
475 PF07575 Nucleopor_Nup85: Nup8 27.4 2E+02 0.0044 30.9 7.5 95 95-193 371-465 (566)
476 cd07153 Fur_like Ferric uptake 27.1 1.4E+02 0.0031 23.8 5.0 45 102-146 6-50 (116)
477 PF02607 B12-binding_2: B12 bi 26.9 1.2E+02 0.0027 22.0 4.2 39 309-347 12-50 (79)
478 cd08326 CARD_CASP9 Caspase act 26.6 2.1E+02 0.0045 21.6 5.2 38 77-114 42-79 (84)
479 COG5108 RPO41 Mitochondrial DN 26.5 3.8E+02 0.0081 29.0 8.6 47 303-349 33-81 (1117)
480 KOG0292 Vesicle coat complex C 26.3 9.6E+02 0.021 27.2 11.6 130 276-429 652-781 (1202)
481 COG2178 Predicted RNA-binding 26.3 4.8E+02 0.01 23.4 8.2 50 277-326 39-97 (204)
482 PF09670 Cas_Cas02710: CRISPR- 26.1 6.9E+02 0.015 25.2 11.7 55 105-160 140-198 (379)
483 PF10475 DUF2450: Protein of u 25.7 3.1E+02 0.0066 26.5 7.7 52 172-225 104-155 (291)
484 KOG3636 Uncharacterized conser 25.1 5.6E+02 0.012 26.1 9.1 83 126-209 178-272 (669)
485 KOG0508 Ankyrin repeat protein 25.0 3.6E+02 0.0079 27.7 7.9 46 396-441 331-382 (615)
486 COG0735 Fur Fe2+/Zn2+ uptake r 25.0 3.5E+02 0.0075 22.9 7.0 62 322-385 10-71 (145)
487 KOG4567 GTPase-activating prot 24.9 6.5E+02 0.014 24.5 10.0 73 318-396 263-345 (370)
488 COG5108 RPO41 Mitochondrial DN 24.7 3.7E+02 0.0081 29.0 8.2 71 136-206 33-112 (1117)
489 PRK11639 zinc uptake transcrip 24.6 2.6E+02 0.0057 24.3 6.4 61 324-386 17-77 (169)
490 PF12796 Ank_2: Ankyrin repeat 24.6 2.4E+02 0.0053 20.8 5.6 50 76-131 5-54 (89)
491 PF11817 Foie-gras_1: Foie gra 24.4 2.7E+02 0.0058 26.1 6.9 16 104-119 18-33 (247)
492 KOG4567 GTPase-activating prot 24.2 6.7E+02 0.015 24.4 9.8 42 152-193 264-305 (370)
493 COG5187 RPN7 26S proteasome re 23.9 5.3E+02 0.011 24.7 8.2 95 368-462 114-219 (412)
494 PF13934 ELYS: Nuclear pore co 23.6 5.8E+02 0.013 23.5 13.3 112 280-401 91-204 (226)
495 PF03745 DUF309: Domain of unk 23.6 1.4E+02 0.003 20.9 3.6 17 7-23 11-27 (62)
496 KOG2471 TPR repeat-containing 23.2 8.7E+02 0.019 25.4 11.5 302 123-463 9-363 (696)
497 PF02607 B12-binding_2: B12 bi 22.6 1.8E+02 0.0039 21.2 4.4 41 207-247 11-51 (79)
498 KOG1308 Hsp70-interacting prot 22.6 1E+02 0.0022 30.1 3.6 116 345-463 126-243 (377)
499 PF02847 MA3: MA3 domain; Int 22.5 1.4E+02 0.0031 23.6 4.1 21 102-122 8-28 (113)
500 PF04090 RNA_pol_I_TF: RNA pol 22.5 5.8E+02 0.012 23.0 8.3 60 403-462 43-103 (199)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-124 Score=1019.89 Aligned_cols=604 Identities=36% Similarity=0.672 Sum_probs=596.4
Q ss_pred CccchhhcCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 1 MIRGFVSNDCFQHAIEFYNSMRNEG-FLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCG 79 (604)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 79 (604)
+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.|.++|..|.+.|+.||..++|.|+.+|+++|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3678999999999999999998864 789999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 80 YLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044872 160 AGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVL 239 (604)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 239 (604)
.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHH
Q 044872 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
.+|++.|.++.|.++|..|.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|++
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044872 320 VFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEP 399 (604)
Q Consensus 320 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 399 (604)
+|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++++++|+++|++++|.+++++|+..|
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p 492 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~ 479 (604)
+..+|++|+.+|+.+|+++.|..+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+|||++++
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHHHHhhhHHHHHHHHccccCCCCCeEEEEe
Q 044872 480 VVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAK 559 (604)
Q Consensus 480 ~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 559 (604)
++|.|++|+..||+.++|+..+.++..+|++.||.||+..+++++++++|+..+..||||||+|||||+++||.||||+|
T Consensus 573 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~k 652 (697)
T PLN03081 573 QDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQ 652 (697)
T ss_pred eEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCChhHHHHHHhhhcCceEEEecCCccceeccccccCCCCC
Q 044872 560 NLRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKDFW 604 (604)
Q Consensus 560 ~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~~~ 604 (604)
|||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 653 nlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 653 SHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-121 Score=1015.45 Aligned_cols=599 Identities=39% Similarity=0.724 Sum_probs=590.7
Q ss_pred CccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY 80 (604)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 80 (604)
||++|+++|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 81 LADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
+++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||++++.
T Consensus 419 g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 59999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHH
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGV 320 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 320 (604)
+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 044872 321 FGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN 400 (604)
Q Consensus 321 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 400 (604)
|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|++++++|+++|++++|.+++++|+++||
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999999999997789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCE
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGV 480 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~ 480 (604)
..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|+||+|||+++++
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHHHHhhhHHHHHHHHccccCCCCCeEEEEec
Q 044872 481 VHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEKLALAFGLITTAPKDVIRIAKN 560 (604)
Q Consensus 481 ~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 560 (604)
+|.|++|+.+||+.++||..|+++..+|++.||.||+..++ ++++++|+..++.||||||+|||||+++||.||||+||
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~kn 815 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKN 815 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCC
Confidence 99999999999999999999999999999999999999888 55788899999999999999999999999999999999
Q ss_pred ccccCChhHHHHHHhhhcCceEEEecCCccceeccccccCCC
Q 044872 561 LRVCGDCHEAIKLISKITGREIIVRDNNRFHCFIEGSCSCKD 602 (604)
Q Consensus 561 l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~~s~~~ 602 (604)
||+|+|||+++|+||++++|+|||||.+|||||++|+|||+|
T Consensus 816 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 816 LYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-76 Score=655.74 Aligned_cols=584 Identities=24% Similarity=0.418 Sum_probs=519.4
Q ss_pred CccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 1 MIRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY 80 (604)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 80 (604)
+|++|++.|++++|+.+|+.|.+.|+.|+..+|..++.+|.+.+.+..|.++|..+.+.+..++..++|+|+.+|+++|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 81 LADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
++.|.++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+.+.
T Consensus 137 ~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred hHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
|+.||+.++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+|...|+.||..||+.++.
T Consensus 217 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~ 296 (857)
T PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296 (857)
T ss_pred CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHH
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGV 320 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 320 (604)
+|++.|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++
T Consensus 297 a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 044872 321 FGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN 400 (604)
Q Consensus 321 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 400 (604)
|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+. |+.|+..+|++|+++|+++|++++|.++|++|+ +||
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d 454 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD 454 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC
Confidence 999999999999999999999999999999999999999976 999999999999999999999999999999997 579
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCC----------
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIR---------- 470 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~---------- 470 (604)
..+|++++.+|.+.|+.++|..+|++|.+.-+.|..+|..++.+|++.|..+.+.+++..|.+.|+.++.
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 9999999999999999999999999998543335556655554444444444444444444443333221
Q ss_pred -------------------ceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHH
Q 044872 471 -------------------GCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQY 531 (604)
Q Consensus 471 -------------------~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~ 531 (604)
..+| +.++.|+..|++.+++. +++++|++.|+.||..++..-+..+.+.+
T Consensus 535 ~k~G~~~~A~~~f~~~~~d~~s~-------n~lI~~~~~~G~~~~A~----~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 535 VRCGRMNYAWNQFNSHEKDVVSW-------NILLTGYVAHGKGSMAV----ELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHcCCHHHHHHHHHhcCCChhhH-------HHHHHHHHHcCCHHHHH----HHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 2356 67788888999888874 78889999999999999987776666544
Q ss_pred HH---hhhHHHHHHHHccccCCCCCeEEEEecccccCChhHHHHHHhhhcCc------eEEEecCCccceeccccc
Q 044872 532 FL---ACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGR------EIIVRDNNRFHCFIEGSC 598 (604)
Q Consensus 532 ~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~------~~~~~~~~~~h~~~~g~~ 598 (604)
.+ ....+.+...+|+.++..++. ++++-+.++|+..+|.++|.+++.+ ..++..|+.+.+.+.|+-
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 33 223344444577766665555 5788999999999999999998644 234455655555555543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.6e-65 Score=554.73 Aligned_cols=441 Identities=18% Similarity=0.279 Sum_probs=413.1
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHHHHH
Q 044872 28 PTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIP----DKNVVSWTAII 103 (604)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li 103 (604)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||..+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999997 48999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcCC
Q 044872 104 SGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE--AGKGRNVFVATSLVDLYAKCGN 181 (604)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~ 181 (604)
.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.||..+|++|+.+|+++|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999987 6789999999999999999999
Q ss_pred HHHHHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 044872 182 MEKARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSF 257 (604)
Q Consensus 182 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 257 (604)
+++|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999976 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 044872 258 MERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK----DKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 258 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|+.++|+++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999995 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHh----hcC-------------------CHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLG----RSG-------------------QLDEAHE 390 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~ 390 (604)
.||+.++.+|++.|++++|.++|+.|.+. |+.||..+|+++++++. +++ ..++|..
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 99999999999999999999999999976 99999999999997643 222 2467999
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 391 LIKSM---PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA-LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 391 ~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
+|++| ++.||..||+.++.++...+..+.+..+++.+.. -.+.+..+|..|++.+.+. .++|..++++|.+.|+
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 99999 8899999999999888888889998888887653 2355678999999987332 3689999999999999
Q ss_pred ccCCc
Q 044872 467 QKIRG 471 (604)
Q Consensus 467 ~~~~~ 471 (604)
.|+..
T Consensus 912 ~p~~~ 916 (1060)
T PLN03218 912 VPSVS 916 (1060)
T ss_pred CCCcc
Confidence 87753
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6e-62 Score=531.02 Aligned_cols=528 Identities=17% Similarity=0.249 Sum_probs=457.4
Q ss_pred CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHH
Q 044872 26 FLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGL-DCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIIS 104 (604)
Q Consensus 26 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 104 (604)
..++...|..++..+.+.|+++.|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+||.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456778899999999999999999999999999985 5777888899999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 044872 105 GYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEK 184 (604)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (604)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHH
Q 044872 185 ARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQR--ENLKPEYYTMVGVLSACASLGALELGVWASSFM 258 (604)
Q Consensus 185 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 258 (604)
|.++|++|.+ ||..+||.||.+|++.|++++|.++|.+|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999964 8999999999999999999999999999986 689999999999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 259 ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 259 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999974 789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM---PMEPNAIVWGALLAGC 411 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~ 411 (604)
+|++++.+|++.|++++|.++|+.|.+. |+.||..+|++||.+|++.|++++|.++|++| ++.||..+|++++.+|
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999875 99999999999999999999999999999998 7889999999999999
Q ss_pred HhcCChHHHHHHHHHHHccC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC-ccCCceeEEEECCEEEEEEecCC
Q 044872 412 RLHKKTDLAEHVLNQLIALE-PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI-QKIRGCSWVEVDGVVHEFLVGDN 489 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~s~~~~~~~~~~f~~~~~ 489 (604)
.+.|+++.|.+++++|.+.+ ..|..+|..|+.+|. +++++|.++.+.+..-+. .+....+|
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w--------------- 827 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIENKW--------------- 827 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccccch---------------
Confidence 99999999999999998754 225678888887754 246666665444432110 00011122
Q ss_pred CCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhh-hHHHHhhhHHHHHHHHccccCCCCCeEE--EEecccccCC
Q 044872 490 SHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEE-KQYFLACHSEKLALAFGLITTAPKDVIR--IAKNLRVCGD 566 (604)
Q Consensus 490 ~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~l~~c~~ 566 (604)
. .....++++|++.|+.||..++...+ .|. +... ......+-..++..+.+|+.... +++.+ |..
T Consensus 828 ----~----~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~ 895 (1060)
T PLN03218 828 ----T----SWALMVYRETISAGTLPTMEVLSQVL-GCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGF--GEY 895 (1060)
T ss_pred ----H----HHHHHHHHHHHHCCCCCCHHHHHHHH-HHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccC
Confidence 1 22357889999999999998886544 222 1111 12233344446666666664421 33332 112
Q ss_pred hhHHHHHHhhhcCceEE
Q 044872 567 CHEAIKLISKITGREII 583 (604)
Q Consensus 567 ~~~~~~~~s~~~~~~~~ 583 (604)
-..|..++..+..+.|+
T Consensus 896 ~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred hHHHHHHHHHHHHcCCC
Confidence 25799999998888664
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-59 Score=507.99 Aligned_cols=487 Identities=23% Similarity=0.362 Sum_probs=429.2
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRG-LKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSL 172 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (604)
++..+|+.+|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 577899999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 044872 173 VDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV 252 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (604)
+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 253 WASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCR 412 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 412 (604)
..||++++.+|++.|.+++|.++++.|.+. |+.||..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999976 999999999999999999999999999999996 589999999999999
Q ss_pred hcCChHHHHHHHHHHHccC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHhh-CCCccCCceeEEEECCEEEEEEecCC
Q 044872 413 LHKKTDLAEHVLNQLIALE--PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD-KGIQKIRGCSWVEVDGVVHEFLVGDN 489 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~f~~~~~ 489 (604)
++|+.++|.++|++|.+.+ | |..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+... | +.++.+..
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-y-------~~li~~l~ 473 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH-Y-------ACMIELLG 473 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc-h-------HhHHHHHH
Confidence 9999999999999998644 5 678999999999999999999999999986 577765432 2 34555666
Q ss_pred CCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhhHHHHhhhHHH-HHHHHccccCCCCCeEEEEecccccCChh
Q 044872 490 SHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEKQYFLACHSEK-LALAFGLITTAPKDVIRIAKNLRVCGDCH 568 (604)
Q Consensus 490 ~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~l~~c~~~~ 568 (604)
..++.+++++ .+++.++.||..+|..-+..+.+++.+- -.+. ....+++-+...+..+.+.+-+..+|+..
T Consensus 474 r~G~~~eA~~-------~~~~~~~~p~~~~~~~Ll~a~~~~g~~~-~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 474 REGLLDEAYA-------MIRRAPFKPTVNMWAALLTACRIHKNLE-LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred hcCCHHHHHH-------HHHHCCCCCCHHHHHHHHHHHHHcCCcH-HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHH
Confidence 6676666643 3456789999887755454443332210 0011 11224554444444455666788999999
Q ss_pred HHHHHHhhhcCceEE-------EecCCccceecccccc
Q 044872 569 EAIKLISKITGREII-------VRDNNRFHCFIEGSCS 599 (604)
Q Consensus 569 ~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~~s 599 (604)
+|.+++.++..+.+- +.-.+..|.|..|-.+
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 999999999988652 3345567888766443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=2.2e-28 Score=277.73 Aligned_cols=451 Identities=14% Similarity=0.083 Sum_probs=261.9
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.+...|++++|++.|+.+.+..+. +......++..+.+.|+++.|..+++.+.+. .+.+..++..+...|...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHH
Confidence 345566667777777666654432 2233444555566666666666666666553 23445566666666666666666
Q ss_pred HHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|..++..+.+.
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666665432 234455556666666666666666666666543 224455556666666666666666666666554
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVG 237 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 237 (604)
+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 4 33445555666666666666666666666543 234556666666666666666666666665532 223444555
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCH
Q 044872 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 314 (604)
+..++...|+++.|..++..+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...|..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 5566666666666666666665543 22345555666666666666666666666543 2334455555566666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044872 315 KVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 315 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (604)
++|.+.|+++... .|+..++..+..++...|++++|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.|++
T Consensus 720 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6666666666553 344455555556666666666666666665542 233455555566666666666666666665
Q ss_pred C-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 395 M-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 395 ~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+ ... ++..+++.+...+...|+ ++|+..++++++..|+++..+..++.++...|++++|.++++++.+.+
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5 222 244455556666666666 556666666666666666566666666666666666666666665543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.1e-27 Score=272.08 Aligned_cols=451 Identities=15% Similarity=0.065 Sum_probs=376.4
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
..|.+.|++++|.+.|+++.+..+. +...+..+...+...|+++.|...+..+.+.... .......++..|.+.|+++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHH
Confidence 3577889999999999999876432 5566777778888899999999999998876532 3455667788899999999
Q ss_pred HHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 83 DALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 83 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
+|..+++.+.. .+..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++.+.+
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999988754 466789999999999999999999999998753 23455677788888899999999999999988
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 160 AGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
.. +.+..++..+...|.+.|+.++|...|+++.+ .+...+..++..|.+.|++++|..+++++.... +.+..++.
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 75 45778888999999999999999999988754 345678888999999999999999999988753 45677888
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCC
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGY 313 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 313 (604)
.+..++...|+++.|...+..+.+.. +.+...+..+..+|.+.|++++|...|+++.+ .+..+|..++..+...|+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 88999999999999999999988765 33567788899999999999999999998764 356788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 044872 314 VKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIK 393 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (604)
+++|.++++.+.+.+ +++...+..+...+...|++++|...|+.+... .|+..++..+...+.+.|++++|.+.++
T Consensus 685 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 685 TESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred HHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999998864 445677778888899999999999999988843 5666777888899999999999999998
Q ss_pred hC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 394 SM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 394 ~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++ ... .+..++..+...|...|+.++|...|+++++..|+++..+..++.++...|+ ++|..+++++.+.
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 87 333 4566888888889999999999999999999999999999999999999999 8899999988774
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=8.2e-32 Score=216.00 Aligned_cols=106 Identities=68% Similarity=1.118 Sum_probs=96.5
Q ss_pred ceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhh--------HHHHhhhHHHHHH
Q 044872 471 GCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEK--------QYFLACHSEKLAL 542 (604)
Q Consensus 471 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~l~~ 542 (604)
|+||+++ |.|++|+.+||+. ++..+|...||.|+...+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899776 9999999999987 455677888999999999998888766 4578999999999
Q ss_pred HHccccCCCCCeEEEEecc-cccCChhHHHHHHhhhcCceEEEecCCccceec
Q 044872 543 AFGLITTAPKDVIRIAKNL-RVCGDCHEAIKLISKITGREIIVRDNNRFHCFI 594 (604)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 594 (604)
||||+++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.4e-20 Score=215.34 Aligned_cols=450 Identities=13% Similarity=0.035 Sum_probs=289.6
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNF-TFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
.+.+.|++++|+..|+++.+.++. +.. ............|+.++|...++.+++.. +.+...+..+...+...|+.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 467889999999999999876432 322 11111222234588999999999998874 445677888889999999999
Q ss_pred HHHHHhccCCCCCc------cc-----------------HH----------------------------------HHHHH
Q 044872 83 DALKVFDDIPDKNV------VS-----------------WT----------------------------------AIISG 105 (604)
Q Consensus 83 ~A~~~f~~~~~~~~------~~-----------------~~----------------------------------~li~~ 105 (604)
+|...|+++...+. .. +. .....
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999887632110 00 00 11234
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC-hhHH------------HHH
Q 044872 106 YINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRN-VFVA------------TSL 172 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~------------~~l 172 (604)
+...|++++|+..|++.++... .+...+..+..++...|++++|...++.+++...... ...+ ..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 5667889999999998887532 2667788888888889999999999998887653321 1111 223
Q ss_pred HHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHH------
Q 044872 173 VDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSAC------ 242 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~------ 242 (604)
...+.+.|++++|...|++..+ .+...+..+...|...|++++|++.|++..+. .|+ ...+..+...+
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCHH
Confidence 4567788999999999988765 34556777888899999999999999888764 333 33333333332
Q ss_pred ------------------------------------HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044872 243 ------------------------------------ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQA 286 (604)
Q Consensus 243 ------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (604)
...|++++|...++.+++.... ++.++..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 2334444444444444443321 233344444445555555555
Q ss_pred HHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhccCcHHHHHH
Q 044872 287 CKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN---------TFVGLLCGCTHAGLVDEGRQ 354 (604)
Q Consensus 287 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~ 354 (604)
...|+++.+ | +...+..+...+...|+.++|+..++++......++.. .+......+...|+.++|..
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 555444422 1 22222223333334444444444444432211111110 11223344555666666666
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
+++. .+++...+..+...|.+.|++++|.+.|++. ...| +...+..+...+...|+.++|++.++++.+..|
T Consensus 595 ~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 6551 1234555667788888899999999988887 4455 456888888888889999999999998888888
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 433 WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 433 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+++..+..++.++...|++++|.++++++.+..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 888888888899999999999999999887653
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-21 Score=190.70 Aligned_cols=443 Identities=14% Similarity=0.127 Sum_probs=327.1
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADAL 85 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 85 (604)
.+.|++++|.+.-...-+.+. .+......+-..+.+..+++...+--...++.. +.-..+|..+.+.+-..|++++|+
T Consensus 59 yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al 136 (966)
T KOG4626|consen 59 YQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDAL 136 (966)
T ss_pred HhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHH
Confidence 456777777776554433321 122323223333444444554444333333332 223567788888888889999999
Q ss_pred HHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHHhcCCChHHHHHHHHHHHHhC
Q 044872 86 KVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIV-RVLTACTQLGDLSTAKWIHGYVNEAG 161 (604)
Q Consensus 86 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~g 161 (604)
.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+..... .+.......|++++|...+.++++..
T Consensus 137 ~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 137 ALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhC
Confidence 99887765 35678888889999999999999988888774 56554332 23333445788888888888887754
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHH
Q 044872 162 KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDI---VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVG 237 (604)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 237 (604)
. -=..+|+.|...+-..|++..|..-|++...-|+ ..|-.|...|-..+.+++|+..|.+.... .|+ ...+..
T Consensus 215 p-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gN 291 (966)
T KOG4626|consen 215 P-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGN 291 (966)
T ss_pred C-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccc
Confidence 2 2345788888888888999999999888876433 47888888888888999999888887663 564 455666
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCH
Q 044872 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 314 (604)
+...|-..|.++.|...+++.+..... -+..|+.|..++-..|++.+|.+.|.+... + -..+.+.|...|...|.+
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 666777888999999998888775422 367788888888888999999999888764 2 346778888889999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHH
Q 044872 315 KVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELI 392 (604)
Q Consensus 315 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 392 (604)
++|..+|....+ +.|.- ..++.|...|-++|++++|+..+++.. .++|+ ...|+.+...|-..|+.+.|.+.+
T Consensus 371 e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 371 EEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred hHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 999999988887 67765 578888888889999999999998887 67887 567888888899999999999888
Q ss_pred HhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 393 KSM-PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 393 ~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
.+. .+.|.- ...+.|...|...|+..+|+..+++.+.++|+.+.+|-.++.++----+|.+-.+.++++
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 877 677754 478888888999999999999999999999998888888887776666666644443333
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=3.6e-20 Score=211.90 Aligned_cols=449 Identities=12% Similarity=0.061 Sum_probs=306.9
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccH-----------------HHHHHHHHccCChHHHHHHHHHHHHhCCCCCh
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTF-----------------PFVLKACAREHDFQLGVRSHSLIVKAGLDCDE 65 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 65 (604)
..+.+.|+.++|...++++.+.. |+...+ ..+...+...|++++|.+.++.+.+.. +++.
T Consensus 70 ~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~ 146 (1157)
T PRK11447 70 RLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPEL 146 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCCh
Confidence 34678999999999999998865 443332 223345778899999999999998754 3332
Q ss_pred hH-HHHHHHHHHhcCChHHHHHHhccCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC--------------
Q 044872 66 FV-KTSLLNLYVHCGYLADALKVFDDIPD--K-NVVSWTAIISGYINEGNLEEAINMFRRLLHRGL-------------- 127 (604)
Q Consensus 66 ~~-~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------- 127 (604)
.. ...+.......|+.++|.+.|+++.. | +...+..+...+...|++++|++.|+++.....
T Consensus 147 ~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~ 226 (1157)
T PRK11447 147 DLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIK 226 (1157)
T ss_pred HHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 21 11111222345999999999998865 2 566788899999999999999999998865321
Q ss_pred ----C--------------CChhhHH---------------------HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH
Q 044872 128 ----K--------------PDSFSIV---------------------RVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFV 168 (604)
Q Consensus 128 ----~--------------p~~~t~~---------------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 168 (604)
. |+...+. ....++...|++++|...++.+++.. +.+..+
T Consensus 227 ~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a 305 (1157)
T PRK11447 227 DMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEA 305 (1157)
T ss_pred ccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 0 1110000 11233456788899999998888865 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--CCc---chHHHH------------HHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPE--KDI---VSWSSM------------IQGYASNGFPKEALDMFYNMQRENLKPE 231 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 231 (604)
+..|...|.+.|++++|+..|++..+ |+. ..|..+ ...+.+.|++++|+..|++..+.. +.+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 88889999999999999999888754 221 123222 345678899999999999988753 234
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------------cc
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD------------QV 299 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~ 299 (604)
...+..+...+...|++++|.+.++.+++.... +...+..+...|. .++.++|..+++.+.... ..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 556667778888889999999999988876432 3444455555553 345566666665543211 11
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHH------
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY------ 372 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~------ 372 (604)
.+..+...+...|++++|++.|++..+ ..|+ ...+..+...+...|++++|...++.+.+...- +...+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~ 538 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN--DPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Confidence 233344555566666777776666666 3443 334455556666666666666666665532111 11111
Q ss_pred --------------------------------------HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044872 373 --------------------------------------GCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLH 414 (604)
Q Consensus 373 --------------------------------------~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 414 (604)
..+.+.+...|+.++|.++++.-| ++...+..+...+...
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHc
Confidence 123345566677777777777433 3445667788889999
Q ss_pred CChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 415 KKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 415 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++...+.
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999988764
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.8e-21 Score=186.27 Aligned_cols=417 Identities=14% Similarity=0.152 Sum_probs=331.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCCh
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNL 112 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 112 (604)
|..-..+.|++..|++--..+-... +.+....-.+-..|.+..+.+.....-..... .-..+|..+...+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 4444455666666655333322211 11122222222455555555543332222111 2346788999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 113 EEAINMFRRLLHRGLKP-DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNV-FVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 113 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
++|+.+++.|++. +| ....|..+..++...|+.+.|.+.+...++.+ |+. .+.+.+.......|++++|...|.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999985 44 55689999999999999999999999998864 433 344556667777899999999988
Q ss_pred cCCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc
Q 044872 191 QMPE--KD-IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASSFMERNEFLSN 266 (604)
Q Consensus 191 ~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (604)
+..+ |. .+.|+.|...+-.+|+...|+..|++... +.|+ ...|..+-..+...+.++.|...+........ ..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cc
Confidence 8665 33 46899999999999999999999999876 4565 34677788888888888888888877766432 24
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKDKD---QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCG 342 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 342 (604)
..++..+...|...|.++.|...|++..+.+ ...|+.|..++-..|+..+|...|.+... ..|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 5667778888999999999999999987643 46899999999999999999999999988 66765 688899999
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDL 419 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~ 419 (604)
+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|..-+++. .++|+.. .++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999887 45676 567888999999999999999999988 8889855 99999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|.+.+.++++.+|.-..++..|+.+|-.+|+..+|+.-++...+..
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999988743
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.5e-18 Score=189.90 Aligned_cols=211 Identities=10% Similarity=0.005 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 325 (604)
.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..
T Consensus 492 ~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL 569 (987)
T PRK09782 492 PGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAE 569 (987)
T ss_pred cHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444443332 3332233334444578888888888877653 334456666677788888888888888887
Q ss_pred HCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HH
Q 044872 326 KCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AI 402 (604)
Q Consensus 326 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 402 (604)
+. .|+. ..+..+.......|++++|...++... ...|+...+..+..++.+.|++++|.+.+++. ...|+ ..
T Consensus 570 ~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 570 QR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred hc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 74 3443 233333444556699999999999887 44677888888889999999999999999888 55665 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.+..+...+...|+.++|+..++++++.+|+++..+..++.++...|++++|...+++..+..
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777788889999999999999999999999999999999999999999999999999998643
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=4.8e-18 Score=182.66 Aligned_cols=416 Identities=12% Similarity=0.006 Sum_probs=282.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCC
Q 044872 35 FVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGN 111 (604)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 111 (604)
.....+...|+++.|...|..+++. .|+...|..+...|.+.|++++|...++...+ .+...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4445566778888888888877764 45666777777778888888888887776543 245577777778888888
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 112 LEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
+++|+.-|......+.. +......++..... ..+........+.. +.+...+..+.. |......+.+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 88888777665543211 11111111111111 11222222222221 122222222222 2222122222221222
Q ss_pred CCCCCc---chHHHHHHHH---HhCCCchHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC
Q 044872 192 MPEKDI---VSWSSMIQGY---ASNGFPKEALDMFYNMQREN-LKPE-YYTMVGVLSACASLGALELGVWASSFMERNEF 263 (604)
Q Consensus 192 ~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (604)
..+.+. ..+..+...+ ...+.+++|++.|++....+ ..|+ ...+..+...+...|+++.|...++..++...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 111111 1111111111 23468999999999998764 3343 44566677777889999999999999987642
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGL 339 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 339 (604)
.+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+ +.|+ ...+..+
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~l 439 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQL 439 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHH
Confidence 2456777888899999999999999998764 3567888999999999999999999999988 5565 4667778
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-------I-VWGALLAG 410 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~ll~~ 410 (604)
..++...|++++|...|+...+. .+.+...++.+...|...|++++|.+.|++. ...|+. . .++..+..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 88899999999999999998853 2334678888999999999999999999986 444421 1 12222223
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...|++++|...++++++++|++...+..++.++.+.|++++|.+.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445799999999999999999999889999999999999999999999998763
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.7e-19 Score=181.58 Aligned_cols=287 Identities=13% Similarity=0.117 Sum_probs=180.3
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCC-C------cchHHHHHHHHHhCCCch
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEK-D------IVSWSSMIQGYASNGFPK 214 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~g~~~ 214 (604)
...|+++.|...+..+.+.+ +.+..++..+...|...|++++|..+++.+... + ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555543 223344555555555555555555555544331 1 123444455555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044872 215 EALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK 294 (604)
Q Consensus 215 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 294 (604)
+|..+|+++.+. . +.+..+++.++.+|.+.|++++|.+.|+.+.
T Consensus 125 ~A~~~~~~~l~~-----------------------------------~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (389)
T PRK11788 125 RAEELFLQLVDE-----------------------------------G-DFAEGALQQLLEIYQQEKDWQKAIDVAERLE 168 (389)
T ss_pred HHHHHHHHHHcC-----------------------------------C-cchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 555555555432 1 1233444555555555555555555555553
Q ss_pred CCCc--------ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC
Q 044872 295 DKDQ--------VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 295 ~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
+.+. ..|..+...+.+.|++++|...|+++.+. .|+ ...+..+...+...|++++|.++|+.+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 243 (389)
T PRK11788 169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--- 243 (389)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 3211 12344556667777788888888777763 343 345666667777788888888888877743
Q ss_pred CCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 366 TPM--IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 366 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
.|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|..+++++++..|++. .+..+.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~ 322 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLL 322 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHH
Confidence 233 355677788888888888888888887 4567766677788888899999999999999988888765 454445
Q ss_pred HHHHh---cCChHHHHHHHHHHhhCCCccCCc
Q 044872 443 NIYSA---SHKWNDAAKIRSMMGDKGIQKIRG 471 (604)
Q Consensus 443 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 471 (604)
..+.. .|+.+++..++++|.+++++++|.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 44443 568899999999999888888876
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3.3e-19 Score=181.97 Aligned_cols=282 Identities=13% Similarity=0.138 Sum_probs=135.0
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCC-C------cccHHHHHHHHHhCCChh
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDK-N------VVSWTAIISGYINEGNLE 113 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~g~~~ 113 (604)
...|+++.|...+..+++.+ +.+..++..+...|...|++++|..+++.+... + ...|..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555542 123344555555555555555555555544331 1 123455555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 114 EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRN----VFVATSLVDLYAKCGNMEKARRVF 189 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~ 189 (604)
+|+.+|+++.+.. +++..++..+...+...|++++|.+.+..+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5555555555431 22344555555555555555555555555554432221 112334444455555555555555
Q ss_pred ccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc
Q 044872 190 DQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSN 266 (604)
Q Consensus 190 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (604)
+++.+ | +...+..+...|.+.|++++|.+.|+++... +....
T Consensus 204 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------------------------~p~~~ 248 (389)
T PRK11788 204 KKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----------------------------------DPEYL 248 (389)
T ss_pred HHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------------------------------ChhhH
Confidence 55432 1 2234444455555555555555555555443 22212
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT 344 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 344 (604)
..+++.++.+|.+.|++++|...|+++.+ |+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhh
Confidence 23334444455555555555555544432 3333334444455555555555555555544 2455555544444333
Q ss_pred c---cCcHHHHHHHHHHchh
Q 044872 345 H---AGLVDEGRQFFNSMSR 361 (604)
Q Consensus 345 ~---~g~~~~a~~~~~~~~~ 361 (604)
. .|+.+++...++.+.+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hccCCccchhHHHHHHHHHH
Confidence 2 2345555555555543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=6.1e-17 Score=177.33 Aligned_cols=399 Identities=10% Similarity=-0.031 Sum_probs=241.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCC---CCCcccHHHHHHH
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIP---DKNVVSWTAIISG 105 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 105 (604)
+..-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++.. ..+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444556666778899999999988887632 3445568888888999999999999998843 3356678888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 044872 106 YINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKA 185 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 185 (604)
+...|++++|+..+++..+.. +.+.. +..+..++...|+.+.|...++.+++... .+..++..+..++...|..++|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHH
Confidence 899999999999999988762 22444 77777788889999999999999988753 3566667788888888999999
Q ss_pred HHHHccCCCCCcc--------hHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHH
Q 044872 186 RRVFDQMPEKDIV--------SWSSMIQGYA-----SNGFP---KEALDMFYNMQRE-NLKPEYY-TMV----GVLSACA 243 (604)
Q Consensus 186 ~~~~~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~----~ll~~~~ 243 (604)
.+.++.... ++. ....++..+. ..+++ ++|++.++.+... ...|+.. .+. ..+.++.
T Consensus 170 l~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 170 LGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 998887765 211 1112222221 11223 6677777777653 2223221 111 1123344
Q ss_pred ccCchHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc-------ccHHHHHHHHHhCCCHH
Q 044872 244 SLGALELGVWASSFMERNEFL-SNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ-------VVWNAVVSGLSMNGYVK 315 (604)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~ 315 (604)
..++.++|...++.+.+.+.. |+. ....+...|...|++++|+..|+++.+.+. ..+..+..++.+.|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 556777777777777665422 221 122245567777777777777776643221 12344455666777777
Q ss_pred HHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh
Q 044872 316 VAFGVFGQLEKCGI-----------QPNG---NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR 381 (604)
Q Consensus 316 ~A~~~~~~m~~~g~-----------~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 381 (604)
+|.++++++..... .|+. ..+..+...+...|+.++|++.++.+... .+.+...+..+..++..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 77777777665310 1121 12233334455555555555555555432 12234445555555555
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 382 SGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.|++++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 55555555555554 33343 22444444445555555555555555555555554
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.7e-17 Score=177.90 Aligned_cols=366 Identities=8% Similarity=-0.023 Sum_probs=278.8
Q ss_pred hcCChHHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHH
Q 044872 77 HCGYLADALKVFDDIPD------KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTA 150 (604)
Q Consensus 77 ~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 150 (604)
+..+++.-.-.|...++ .+..-...++..+.+.|++++|+.+++..+..... +...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHH
Confidence 45566666666665554 13344556777888999999999999998876443 334455555666779999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 044872 151 KWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQREN 227 (604)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (604)
...++.+.+.. +.+...+..+...+...|++++|...|++..+ .+...|..+...+.+.|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999998875 34567788889999999999999999988765 345678888999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHH
Q 044872 228 LKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAV 304 (604)
Q Consensus 228 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 304 (604)
..+. ..+.. +..+...|++++|...+..+++....++......+...+.+.|++++|...|++... .+...+..+
T Consensus 175 P~~~-~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRG-DMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCH-HHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3222 22222 334778899999999999887765444455556667788899999999999998765 255677888
Q ss_pred HHHHHhCCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 305 VSGLSMNGYVKV----AFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 305 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
...|...|++++ |+..|++..+ ..|+ ...+..+...+...|++++|...++...+. .|+ ...+..+...
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~ 327 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 889999999886 8999999988 5565 467888888999999999999999998853 454 5567778899
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEPNAIVW-GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999988 456765443 3456678899999999999999999998764 234455555
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+....+
T Consensus 396 ~~~~~~~ 402 (656)
T PRK15174 396 ALDGQIS 402 (656)
T ss_pred HHHHHHH
Confidence 5555554
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.5e-16 Score=172.60 Aligned_cols=447 Identities=12% Similarity=0.064 Sum_probs=302.6
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAR-EHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYL 81 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 81 (604)
..|.+.|++++|+.++.++.+.++. +..-...+-.++.. .++ +.+..++.. .+..++.++.++...|.+.|+.
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~ 263 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEK 263 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCH
Confidence 3456667777777777777776433 23334444444544 244 555554332 2334666677777777777777
Q ss_pred HHHHHHhccCCC-----CCcccHH------------------------------HHHHHHHhCCChhHHHHHH-------
Q 044872 82 ADALKVFDDIPD-----KNVVSWT------------------------------AIISGYINEGNLEEAINMF------- 119 (604)
Q Consensus 82 ~~A~~~f~~~~~-----~~~~~~~------------------------------~li~~~~~~g~~~~A~~~~------- 119 (604)
++|.+++++++. |...+|- .++.-+.+.+.++.+.++.
T Consensus 264 ~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (987)
T PRK09782 264 ARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANE 343 (987)
T ss_pred HHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcch
Confidence 777777776652 1111111 1122333344444333321
Q ss_pred ----------------------HHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-C-CCCChhHHHHHHHH
Q 044872 120 ----------------------RRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA-G-KGRNVFVATSLVDL 175 (604)
Q Consensus 120 ----------------------~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~ 175 (604)
+.|.+. .+-+......+.-.....|+.++|.+++...... + -..+....+-|+..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 111111 0001112222222234556677777777666552 1 12244556678888
Q ss_pred HHhcCC---HHHHHHHH------------c-------------cCCC---C--CcchHHHHHHHHHhCCCchHHHHHHHH
Q 044872 176 YAKCGN---MEKARRVF------------D-------------QMPE---K--DIVSWSSMIQGYASNGFPKEALDMFYN 222 (604)
Q Consensus 176 y~~~g~---~~~A~~~~------------~-------------~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 222 (604)
|.+.+. ..+|..+- . .... + +...|..+..++.. ++.++|+..|.+
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 888876 33333331 1 1111 2 45567777777776 889999998888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHH
Q 044872 223 MQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWN 302 (604)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 302 (604)
.... .|+......+..++...|+++.|...++.+.... |+...+..+...+.+.|++++|...|++..+.++..++
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~ 577 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA 577 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH
Confidence 7764 4676555455556678999999999999876653 33344566778889999999999999988775544444
Q ss_pred HHHH---HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 303 AVVS---GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 303 ~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
.... .....|++++|+..+++..+ ..|+...+..+..++.+.|++++|...++...+ ..|+ ...+..+...
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3333 33445999999999999998 668888899999999999999999999999984 4564 6677888889
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++.......+++..+..+++.|.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999987 5556 456899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCC
Q 044872 457 IRSMMGDKGI 466 (604)
Q Consensus 457 ~~~~m~~~~~ 466 (604)
-+++...-++
T Consensus 733 ~~~r~~~~~~ 742 (987)
T PRK09782 733 EVGRRWTFSF 742 (987)
T ss_pred HHHHHhhcCc
Confidence 8887766544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=7.3e-17 Score=176.71 Aligned_cols=395 Identities=11% Similarity=0.049 Sum_probs=298.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 044872 63 CDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLT 139 (604)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 139 (604)
.++....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|+.+|++.+... +.+...+..+..
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3444455566777889999999999988764 344458999999999999999999999998752 234556677778
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHH
Q 044872 140 ACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 140 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 216 (604)
.+...|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+.+.|..++|
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Confidence 8899999999999999999874 44556 88899999999999999999999865 3 445667788888899999999
Q ss_pred HHHHHHHHHCCCCCCHH------HHHHHHHHHH-----ccCch---HHHHHHHHHHHHc-CCCCch--hHHHH---HHHH
Q 044872 217 LDMFYNMQRENLKPEYY------TMVGVLSACA-----SLGAL---ELGVWASSFMERN-EFLSNP--VLGTT---LIDM 276 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~------t~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~--~~~~~---li~~ 276 (604)
++.++.... .|+.. .....+.... ..+.+ +.|...++.+.+. ...|+. ....+ .+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 999876653 33320 1111222221 11233 6677788787754 222322 11111 1234
Q ss_pred HHhcCCHHHHHHHHHhcCCCC--ccc--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccC
Q 044872 277 YAKCGRMAQACKVFREMKDKD--QVV--WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-----GNTFVGLLCGCTHAG 347 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g 347 (604)
+...|++++|...|+.+.+.+ ... -..+...|...|++++|+..|+++.+.. |. ......+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcc
Confidence 457799999999999998643 111 1225678999999999999999987643 32 244566677889999
Q ss_pred cHHHHHHHHHHchhhcC----------CCCc---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 348 LVDEGRQFFNSMSRVFS----------LTPM---IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 348 ~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
++++|.++++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+.
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~ 404 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ 404 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999885311 1123 234556778899999999999999998 4445 5568899999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
..|++++|++.++++++++|+++..+..++..+...|++++|..+++.+.+..
T Consensus 405 ~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 405 ARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998753
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.3e-16 Score=171.55 Aligned_cols=433 Identities=14% Similarity=0.025 Sum_probs=296.7
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.|.+.|++++|+..|++.+.. .|+...|..+..++...|+++.|...+..+++.. +.+...+..+...|...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 467889999999999999874 5677889999999999999999999999998864 3346678889999999999999
Q ss_pred HHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPDK---NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|..-|...... +......++..+.. ..+........... +++...+..+...+ ..........-+....+
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 285 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE- 285 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhhhcccc-
Confidence 99887654321 11111112211111 22333333333321 12222222222211 11111111111111111
Q ss_pred CCCCCh-hHHHHHHHH---HHhcCCHHHHHHHHccCCCC------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 044872 161 GKGRNV-FVATSLVDL---YAKCGNMEKARRVFDQMPEK------DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230 (604)
Q Consensus 161 g~~~~~-~~~~~li~~---y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 230 (604)
..+.. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|
T Consensus 286 -~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 286 -LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred -cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 11110 011111111 12346889999999887542 3456888888899999999999999998874 45
Q ss_pred C-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHH
Q 044872 231 E-YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVS 306 (604)
Q Consensus 231 ~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 306 (604)
+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+. +...|..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 4 5577788888889999999999999998765 335778888999999999999999999988653 4566777888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch--------HHHHHHHH
Q 044872 307 GLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI--------EHYGCMVD 377 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~ 377 (604)
.+.+.|++++|+..|++... ..|+ ...+..+..++...|++++|...|+...+. .|+. ..++....
T Consensus 442 ~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHH
Confidence 99999999999999999987 4454 577888888999999999999999988742 3321 11222223
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHH
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 455 (604)
.+...|++++|.+++++. ...|+. ..+..+...+...|++++|...|+++.++.+..... .....+.+|.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~ 588 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEAT 588 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHH
Confidence 344579999999999986 555654 478889999999999999999999999887754321 1233445566
Q ss_pred HHHHHHhh
Q 044872 456 KIRSMMGD 463 (604)
Q Consensus 456 ~~~~~m~~ 463 (604)
++....++
T Consensus 589 ~~~~~~~~ 596 (615)
T TIGR00990 589 RTQIQVQE 596 (615)
T ss_pred HHHHHHHH
Confidence 65554444
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=7.7e-16 Score=165.44 Aligned_cols=421 Identities=11% Similarity=0.021 Sum_probs=228.6
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTN--FTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.+.|++++|++.|++.++.. |+. ..+ .++..+...|+.++|...++..+.. -........++...|...|++++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 46677777777777776643 332 223 5556666667777777766666510 11112222223446666677777
Q ss_pred HHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.++|+++.+ .|...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 7777766654 23445556666666677777777777766654 344444433333333344554466667766666
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchH--HHHHHHHHh---------CCC---chHHHHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSW--SSMIQGYAS---------NGF---PKEALDMFYNM 223 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~--~~li~~~~~---------~g~---~~~A~~~~~~m 223 (604)
. +.+...+..++....+.|-...|.++..+-+. +....| ...+.-.++ .++ .+.|+.-++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 33555666666666777776666666655442 000000 000000111 111 23344444444
Q ss_pred HH-CCCCCCHH-----HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044872 224 QR-ENLKPEYY-----TMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD 297 (604)
Q Consensus 224 ~~-~g~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 297 (604)
.. .+-.|... ...-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|+.+|+++...+
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 43 11123211 1112344556666667777777776666655455566666777777777777777776653311
Q ss_pred ---------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CC--CHHH-HHHHHHHHhccCcHHHHHH
Q 044872 298 ---------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-----------QP--NGNT-FVGLLCGCTHAGLVDEGRQ 354 (604)
Q Consensus 298 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~t-~~~ll~a~~~~g~~~~a~~ 354 (604)
......|.-+|...+++++|..+++++.+.-. .| |-.. +..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 11234566666667777777777776665211 12 2222 2233445566666666766
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
.++.+.. .-+-|......+.+++...|.+.+|.+.++.. ...|+. .+......++...+++++|..+.+.+.+..|
T Consensus 438 ~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 6666653 22334556666666666666666666666555 334433 3445555556666666666666666666666
Q ss_pred CCc
Q 044872 433 WNS 435 (604)
Q Consensus 433 ~~~ 435 (604)
+++
T Consensus 516 e~~ 518 (822)
T PRK14574 516 EDI 518 (822)
T ss_pred Cch
Confidence 665
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.9e-15 Score=162.51 Aligned_cols=427 Identities=13% Similarity=0.051 Sum_probs=312.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHH-HH--HHHHHhC
Q 044872 33 FPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWT-AI--ISGYINE 109 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~-~l--i~~~~~~ 109 (604)
|...+. ..+.|++..|...+.++++........++ .++..+...|+.++|+..+++...|+...+. .+ ...|...
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 555444 45889999999999999886533222344 8888899999999999999998876444443 33 4577888
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVF 189 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 189 (604)
|++++|+++|+++.+.... +...+..+...+...++.++|.+.++.+.+. .|+...+..++..+...++..+|.+.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999986432 4566677778889999999999999998876 445555566666665667776799999
Q ss_pred ccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH------HHHHHHHH-----HccCch---HHHH
Q 044872 190 DQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYT------MVGVLSAC-----ASLGAL---ELGV 252 (604)
Q Consensus 190 ~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t------~~~ll~~~-----~~~~~~---~~a~ 252 (604)
+++.+ | +...+..+.....+.|-...|+++..+-... +.|...- ....++.- ....++ +.+.
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 99875 4 4556788889999999999999876653211 1111110 11111110 011223 3344
Q ss_pred HHHHHHHH-cCCCCc--hhHHHHH---HHHHHhcCCHHHHHHHHHhcCCCC----cccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 253 WASSFMER-NEFLSN--PVLGTTL---IDMYAKCGRMAQACKVFREMKDKD----QVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 253 ~~~~~~~~-~~~~~~--~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
.-++.+.. .+..|. +....+. +-++.+.|++.++.+.|+.+.... ..+-.++..+|...+++++|+.+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 44444443 122222 1223333 446678999999999999998532 2345668889999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcC----------CCCc---hHHHHHHHHHHhhcCC
Q 044872 323 QLEKCG-----IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS----------LTPM---IEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 323 ~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~ 384 (604)
++.... ..++......|.-++...+++++|..+++.+.+... -.|+ ...+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 997643 122334457888999999999999999999986311 0122 2344556788899999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 385 LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+..++|++..+....+..+...|+|++|..+.+.+.
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999998 4445 677899999999999999999999999999999999999999999999999999999998887
Q ss_pred hCC
Q 044872 463 DKG 465 (604)
Q Consensus 463 ~~~ 465 (604)
+..
T Consensus 512 ~~~ 514 (822)
T PRK14574 512 SRS 514 (822)
T ss_pred hhC
Confidence 643
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.4e-16 Score=170.69 Aligned_cols=393 Identities=10% Similarity=-0.021 Sum_probs=257.3
Q ss_pred hhhcCCchHHHHHHHHHHhCC--CCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEG--FLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
+.++.+++.---.|....+.- -.-+..-...++..+.+.|+++.|..+++.++.....+ ......++......|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 344555665555555443321 11234445566677778888888888888887765443 333444445556688888
Q ss_pred HHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 044872 83 DALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKP-DSFSIVRVLTACTQLGDLSTAKWIHGYVN 158 (604)
Q Consensus 83 ~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 158 (604)
+|...|+++.. .+...|..+...+.+.|++++|+..|++.... .| +...+..+...+...|++++|...+..+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 88888887654 35567777788888888888888888888774 33 34566777777888888888888888776
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH
Q 044872 159 EAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEK----DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYT 234 (604)
Q Consensus 159 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 234 (604)
.....+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+.+.|++++|+..|++..... +.+...
T Consensus 172 ~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 654332 3333333 3467788888888888876542 22334445667788888888888888887653 224556
Q ss_pred HHHHHHHHHccCchHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHH
Q 044872 235 MVGVLSACASLGALEL----GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSG 307 (604)
Q Consensus 235 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 307 (604)
+..+...+...|++++ |...++.+.+... .+..++..+...+.+.|++++|...+++... | +...+..+...
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6667777788888775 6788888777643 3567778888888888888888888887764 2 34566777788
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC--c-hHHHHHHHHHHhhcC
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGNT-FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP--M-IEHYGCMVDLLGRSG 383 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~-~~~~~~li~~~~~~g 383 (604)
|.+.|++++|+..|+++.. ..|+... +..+..++...|+.++|...|+...+...-.+ + ......+-+++...+
T Consensus 328 l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVN 405 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcC
Confidence 8888888888888888877 3455433 33345667888888888888887764311111 0 122333444445555
Q ss_pred CHHHHHHHHHhCC---CCCCHHHHHH
Q 044872 384 QLDEAHELIKSMP---MEPNAIVWGA 406 (604)
Q Consensus 384 ~~~~A~~~~~~~~---~~p~~~~~~~ 406 (604)
..++......+.. ...|..+|+.
T Consensus 406 ~~~~~~~W~~~~~~~~~~~~~~~~~~ 431 (656)
T PRK15174 406 LPPERLDWAWEVAGRQSGIERDEWER 431 (656)
T ss_pred CccchhhHHHHHhcccccCChHHHHH
Confidence 5554445555551 1235555543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.1e-14 Score=146.61 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=119.2
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCcHHHHHHHHHHchhhc
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTH------------AGLVDEGRQFFNSMSRVF 363 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~ 363 (604)
++..|+-+...+.....+..|.+-|...... ...+|..+..+|.+.|.. .+..++|+++|..+.+
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-- 640 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-- 640 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--
Confidence 3444444444555555555555544443321 122566666666664433 3456788888888874
Q ss_pred CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc-C-CCCchhHH
Q 044872 364 SLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL-E-PWNSGNYV 439 (604)
Q Consensus 364 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-p~~~~~~~ 439 (604)
.-+.|...-+-+.-.++..|++.+|..+|.+. ....+..+|-.+...|...|++-.|+++|+..++. . .+++....
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 23446777788888899999999999999988 22335668999999999999999999999998863 3 45677888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 440 LLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.|+.++.+.|+|.+|.+.........
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988877643
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.2e-13 Score=142.41 Aligned_cols=367 Identities=13% Similarity=0.087 Sum_probs=248.9
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLK--PDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS 171 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 171 (604)
.|++..|.|.+-|.-.|++..+..+...+...-.. .-...|-.+.+++-..|+++.|...|-+..+.....-+..+-.
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46677777777777778888888877777654211 1223466777777788888888888877766543222444556
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC--C-CcchHHHHHHHHHhCC----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 172 LVDLYAKCGNMEKARRVFDQMPE--K-DIVSWSSMIQGYASNG----FPKEALDMFYNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
|..+|.+.|+++.|...|+.+.. | +..+...|...|+..+ ..+.|..++.+..+.- +.|...|..+...+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 77788888888888888877654 2 3345555666666654 3455666655555432 2345555555554443
Q ss_pred cCchHHHHHHHHHH----HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ccc------cHHHHHHH
Q 044872 245 LGALELGVWASSFM----ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-------DQV------VWNAVVSG 307 (604)
Q Consensus 245 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~------~~~~li~~ 307 (604)
. +......++..+ ...+-.+.+.+.|.+...+...|+++.|...|+..... |.. +--.+...
T Consensus 427 ~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 T-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred c-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 3 333334444443 34555577888899999999999999999999876532 221 12224455
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 386 (604)
+-..++++.|.+.|..... -.|..+ .|..++......+...+|...+..... ....++..++.+.+.+.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILK--EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhc
Confidence 6667789999999999888 457664 344444333345778888888888775 33445555666777888888888
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 387 EAHELIKSM----PMEPNAIVWGALLAGCRL------------HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 387 ~A~~~~~~~----~~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
.|.+-|+.+ ...+|..+.-+|.+.|.+ .+..++|+++|.++++.+|.|..+-+-++-+++..|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 888855544 334677777777776532 2457889999999999999998888889999999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
+.+|..+|.+.++...
T Consensus 662 ~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS 677 (1018)
T ss_pred chHHHHHHHHHHHHHh
Confidence 9999999999998654
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.9e-13 Score=128.39 Aligned_cols=295 Identities=17% Similarity=0.229 Sum_probs=218.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-----------------------------hcCChH
Q 044872 32 TFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYV-----------------------------HCGYLA 82 (604)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~-----------------------------~~g~~~ 82 (604)
+=+.|++. ...|.+..+.-+++.|...|.+.+..+-..|...-+ +.|++
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v- 195 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV- 195 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH-
Confidence 44555543 345677777778888877776666655555443321 11222
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 83 DALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 83 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
|.-+|+. ..++..++..||.|+++-...+.|.+++++-.....+.+..+||.++.+-+ +..++.+..+|+...+
T Consensus 196 -AdL~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 196 -ADLLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKM 269 (625)
T ss_pred -HHHHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhc
Confidence 3333333 335778999999999999999999999999998888999999999998765 3344889999999999
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHH----ccCC----CCCcchHHHHHHHHHhCCCchH-HHHHHHHHHHC----CCC
Q 044872 163 GRNVFVATSLVDLYAKCGNMEKARRVF----DQMP----EKDIVSWSSMIQGYASNGFPKE-ALDMFYNMQRE----NLK 229 (604)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----g~~ 229 (604)
.||..++|+++.+..+.|+++.|++.+ .+|+ +|...+|..+|..+.+.++..+ |..++.++... .++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 999999999999999999998876654 4443 4888999999999999888755 55555555442 233
Q ss_pred ---C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcC----CCCc---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 044872 230 ---P-EYYTMVGVLSACASLGALELGVWASSFMERNE----FLSN---PVLGTTLIDMYAKCGRMAQACKVFREMKD--- 295 (604)
Q Consensus 230 ---p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 295 (604)
| |..-|...+..|.+..+.+.|.+++....... +.++ ...|..+..+.+....++.-...|+.|..
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 3 45678889999999999999999998876421 2222 34556677788888889999999998875
Q ss_pred -CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 296 -KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 296 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
|+..+-..++.+....|+++-.-+++..++..|..-+..
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 466666677778888888888888888888776444433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.3e-13 Score=128.54 Aligned_cols=441 Identities=13% Similarity=0.098 Sum_probs=290.0
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHHccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhc
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPF-VLKACAREHDFQLGVRSHSLIVKAGLDCDE----FVKTSLLNLYVHC 78 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~ 78 (604)
.|..+..+.+|+..|+-+.+...-|+.-.+.. +-..+.+.+.+.+|...+...+..-...+. .+.+.+.-.+.+.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 35556667778888887777666666554332 233455666788888888777665322222 2344444556788
Q ss_pred CChHHHHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC------------hhhHHHHHH-----
Q 044872 79 GYLADALKVFDDIPD--KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD------------SFSIVRVLT----- 139 (604)
Q Consensus 79 g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~t~~~ll~----- 139 (604)
|++++|..-|+...+ ||..+--.|+-.+.--|+.++..+.|.+|+.-...|| ....+..++
T Consensus 290 gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred ccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 899999999887543 5655444445555567888888888888876433232 222222221
Q ss_pred HHhcCC--ChHHHHHHHHHHHHhCCCCChh-------------HH--------HHHHHHHHhcCCHHHHHHHHccCCCCC
Q 044872 140 ACTQLG--DLSTAKWIHGYVNEAGKGRNVF-------------VA--------TSLVDLYAKCGNMEKARRVFDQMPEKD 196 (604)
Q Consensus 140 ~~~~~g--~~~~a~~~~~~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~~~~~~~~~ 196 (604)
-.-+.+ +.+++.-.-..++.--+.|+-. .+ -.-..-|.+.|+++.|.++++-...+|
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd 449 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD 449 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc
Confidence 111111 1111111111111111111110 00 111235788899999998888777655
Q ss_pred cchHHH----H-HHHHHhC-CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 197 IVSWSS----M-IQGYASN-GFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 197 ~~~~~~----l-i~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
..+-.+ | .--|.+. .++.+|.++-+..+... +-|....+.--......|+++.|...+.+.+...-.-....|
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealf 528 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALF 528 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHH
Confidence 443222 2 2223333 34555655554443321 112222222222334568999999999999887644444455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC---CCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMK---DKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHA 346 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 346 (604)
|. .-.+-+.|++++|+..|-++. ..++...-.+...|....+...|++++.+... +.| |...+..|...|-+.
T Consensus 529 ni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 529 NI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQE 605 (840)
T ss_pred Hh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcc
Confidence 43 335778999999999997764 35667777788889999999999999988766 455 667888888999999
Q ss_pred CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHH
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGC-RLHKKTDLAEHVL 424 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~ 424 (604)
|+-.+|.+++-.--+ -++.+.++..-|...|....-+++|..+|++. -+.|+..-|..++..| ++.|++++|..++
T Consensus 606 gdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 606 GDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999998775442 45667888888888899999999999999998 5689999999999876 6889999999999
Q ss_pred HHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 425 NQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 425 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+..-...|.+...+..|..++...|-
T Consensus 684 k~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999888874
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=2.7e-11 Score=119.87 Aligned_cols=369 Identities=12% Similarity=0.048 Sum_probs=230.3
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 044872 98 SWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYA 177 (604)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 177 (604)
+|+.-...|.+.+.++-|..+|...++. .+-+...|......--..|..+....+++.++..- +.....|-....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 4555555566666666666666655553 12233444444444445566666666666665543 223444555555556
Q ss_pred hcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 044872 178 KCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWA 254 (604)
Q Consensus 178 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 254 (604)
..|++..|+.++.+.-+ .+...|-+-+..-..+.++++|..+|.+.... .|+...|.--+..---+++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 66666666666665543 23445666666666666677777776666543 34544444444444445666666666
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 044872 255 SSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP 331 (604)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 331 (604)
++..++.- +.-...|-.+.+.+-..++++.|...|..-.+ | .+..|-.+...--+.|....|..++++.+-.+ +-
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 66665542 22344555666666666667766666655443 2 34456666555556666777777777666543 22
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044872 332 NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGC 411 (604)
Q Consensus 332 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 411 (604)
|...|...+..-.+.|+.+.|........+ .++.+-..|.--|.+..+.++-..+.+.+++.. .|+.+..++...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 445666666666777777777766666664 334445566666666666666555555555553 3555556666677
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEEC
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVD 478 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 478 (604)
....+++.|.+.|.+++..+|++..+|..+-..+.+.|.-++-.+++++.... .|.-|..|+.+.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 78889999999999999999999999999999999999999999999887663 455667775443
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=1.8e-11 Score=125.89 Aligned_cols=450 Identities=14% Similarity=0.064 Sum_probs=267.9
Q ss_pred cCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 044872 8 NDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKV 87 (604)
Q Consensus 8 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 87 (604)
.|++++|.+++.+..+..+. +...|.+|...+-..|+.+++...+-.+.-. -+.|...|..+.....+.|.++.|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 39999999999999988655 7778999999999999999888766544333 345678899999999999999999999
Q ss_pred hccCCCCCcccHHH---HHHHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 88 FDDIPDKNVVSWTA---IISGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 88 f~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.+..+.++.-|-. -+..|-+.|+...|++.|.++.....+.|.. +.-.+++.+...++-+.|.++++.....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99887654444444 3578889999999999999999864422222 2333456677777778888888877763
Q ss_pred C-CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC----CC----------------------cchHHH----HHHHHHh
Q 044872 161 G-KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE----KD----------------------IVSWSS----MIQGYAS 209 (604)
Q Consensus 161 g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~~----li~~~~~ 209 (604)
+ -..+...++.++.+|.+..+++.|......+.. +| ..+|+. +.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 3 234556788899999999988888776544322 11 111111 1112222
Q ss_pred CCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 044872 210 NGFPKEALDMFYNMQRENLKP--EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQAC 287 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 287 (604)
....+....+........+.| +...|.-+..++.+.|.+..|..++..+......-+..+|-.+..+|...|..+.|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 222222222222233333222 333455555566666666666666666655544444555555666666666666666
Q ss_pred HHHHhcCCCCcc---cHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044872 288 KVFREMKDKDQV---VWNAVVSGLSMNGYVKVAFGVFGQLEK--------CGIQPNGNTFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 288 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
..|+.+..-++. .--+|-+.+.+.|+.++|++.+..+.. .+..|+..........+...|+.++-..+-
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~ 549 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTA 549 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 666655442222 222333445556666666666555321 122333322222333333334333322211
Q ss_pred HHchhh--------------------------------------------------------------cCCCCc--hHHH
Q 044872 357 NSMSRV--------------------------------------------------------------FSLTPM--IEHY 372 (604)
Q Consensus 357 ~~~~~~--------------------------------------------------------------~~~~p~--~~~~ 372 (604)
..|... .++.-+ -..+
T Consensus 550 ~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~ 629 (895)
T KOG2076|consen 550 STLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELF 629 (895)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHH
Confidence 111100 011111 1234
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-C----CCCCH-H-H-HHHHHHHHHhcCChHHHHHHHHHHHcc-----CCCCchhHH
Q 044872 373 GCMVDLLGRSGQLDEAHELIKSM-P----MEPNA-I-V-WGALLAGCRLHKKTDLAEHVLNQLIAL-----EPWNSGNYV 439 (604)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~-~----~~p~~-~-~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~ 439 (604)
.-++..+.+.|++++|+.+...+ . ..++. . . =...+.++...+++..|...++-++.. +|.-...|+
T Consensus 630 ~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n 709 (895)
T KOG2076|consen 630 RELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWN 709 (895)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 55667888999999999988776 1 11222 1 2 233455677889999999999988865 555555666
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 044872 440 LLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~ 459 (604)
...+...+.|+-.--.+.+.
T Consensus 710 ~~~s~~~~~~q~v~~~R~~~ 729 (895)
T KOG2076|consen 710 LDFSYFSKYGQRVCYLRLIM 729 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555666654333333333
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=2e-10 Score=113.83 Aligned_cols=421 Identities=12% Similarity=0.072 Sum_probs=330.0
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHH
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAIN 117 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 117 (604)
....+.+.|+-++..+++.- +.+...|.+ |++..-++.|.++++...+ .+...|.+-...=-.+|+.+....
T Consensus 387 VelE~~~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 34456666888888877753 444444544 4555677888888776544 477788877777778898888888
Q ss_pred HHHH----HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 118 MFRR----LLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR--NVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 118 ~~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
++.+ +...|+..+..-|..=..+|-..|..-.+..|....+..|++. --.+|+.-.+.|.+.+.++-|+.+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 7765 3457888898889888889999999999999999988888754 346888888999999999999999988
Q ss_pred CCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchh
Q 044872 192 MPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPV 268 (604)
Q Consensus 192 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 268 (604)
..+ .+...|...+..--..|..++-..+|++.... ++-....+.....-.-..|+...|+.++..+.+.... +..
T Consensus 542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 765 45677888887777789999999999998875 2223334444444555679999999999999887644 677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 044872 269 LGTTLIDMYAKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTH 345 (604)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 345 (604)
++-+-+.......+++.|..+|.+... +....|.--+...--.+..++|++++++.++ .-|+. ..|..+...+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHH
Confidence 888888999999999999999998764 5667777777766778999999999999988 56776 467777788999
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
.++++.|...|..=.+ .++-.+..|-.|...=.+.|.+-.|..++++. ..+.+...|-..+..-.++|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998886653 33445678888888888999999999999988 3334677999999999999999999999
Q ss_pred HHHHHccCCCC------------------------------chhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCcee
Q 044872 424 LNQLIALEPWN------------------------------SGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCS 473 (604)
Q Consensus 424 ~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s 473 (604)
..++++.-|++ +.....++.++....+++.|++.|.+....+ ++.|-.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~ 853 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDA 853 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchH
Confidence 88888765654 3456667888999999999999999988744 445555
Q ss_pred E
Q 044872 474 W 474 (604)
Q Consensus 474 ~ 474 (604)
|
T Consensus 854 w 854 (913)
T KOG0495|consen 854 W 854 (913)
T ss_pred H
Confidence 6
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=6.8e-15 Score=142.26 Aligned_cols=255 Identities=16% Similarity=0.134 Sum_probs=112.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGV-LSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGR 282 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 282 (604)
...+.+.|++++|++++++......+|+...|-.+ ...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34445555555555555433332212333333322 22333455566666666666554433 44556666666 67888
Q ss_pred HHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 044872 283 MAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG-IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359 (604)
Q Consensus 283 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 359 (604)
+++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888876643 466778888888999999999999999987633 3446667778888899999999999999999
Q ss_pred hhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 360 SRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 360 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.+. .|+ ......++..+...|+.+++.++++.. ..+.|...|..+..++...|+.++|...+++..+..|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 853 564 777888999999999999988888776 22345568899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
....+++++...|+.++|.+++++...
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999887653
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=1.3e-11 Score=126.91 Aligned_cols=326 Identities=16% Similarity=0.129 Sum_probs=189.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccC---CCCCcchHHHHHHHHHhCCCchHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQM---PEKDIVSWSSMIQGYASNGFPKEALDMFY 221 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 221 (604)
|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-.. ...|...|-.+..-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555543 234444555555555555555554443322 22344445555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHHhcCC--
Q 044872 222 NMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG----TTLIDMYAKCGRMAQACKVFREMKD-- 295 (604)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~-- 295 (604)
+..+.. +++...+---...|-+.|+...|..-+.++.......|..-. ...+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 554432 222222333334444555555555555555443322221111 1123334444444555555554433
Q ss_pred C---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHHhc
Q 044872 296 K---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---------------------------IQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 296 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~~ 345 (604)
. +...++.++..|.....++.|......+.... +.++... ..+.-+..+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 1 22345555555556666666665555554411 2222222 112223333
Q ss_pred cCcHHHHHHHHHHchhhcCCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTP--MIEHYGCMVDLLGRSGQLDEAHELIKSM---PMEPNAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a 420 (604)
....+....+....... .+.| +...|.-+.++|...|++.+|+.+|..+ +...+...|-.+...|...|.++.|
T Consensus 390 L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 33333333333333332 4333 4678889999999999999999999998 2223577999999999999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
.+.|++++.+.|++..+-..|+.+|.+.|+.++|.+++..+..-+-+..+++.|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999887444333455666
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.4e-11 Score=112.26 Aligned_cols=402 Identities=12% Similarity=0.096 Sum_probs=304.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 044872 66 FVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACT 142 (604)
Q Consensus 66 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 142 (604)
..|-.-...=..++++..|+.+|++... ++...|-..+..=.++.....|..++++....=+..|.. |---+..=-
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE 152 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHH
Confidence 3333333333345778899999998765 677889999999999999999999999998753333333 333333445
Q ss_pred cCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccC--CCCCcchHHHHHHHHHhCCCchHHHHHH
Q 044872 143 QLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQM--PEKDIVSWSSMIQGYASNGFPKEALDMF 220 (604)
Q Consensus 143 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 220 (604)
..|++..|.++|+.-.+ ..|+...|++.|+.=.+-..++.|+.++++. ..|++.+|--...--.++|+..-|..+|
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 67999999999998876 5799999999999999999999999999986 4699999999888889999999999999
Q ss_pred HHHHHC-CC-CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH-------
Q 044872 221 YNMQRE-NL-KPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS-NPVLGTTLIDMYAKCGRMAQACKVF------- 290 (604)
Q Consensus 221 ~~m~~~-g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~------- 290 (604)
....+. |- .-+...|++...--.+...++.|.-++...++.=... ....|..+...--+-|+....+...
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 887763 11 1123344444444456778899999999998764332 2456666666556677765554432
Q ss_pred -HhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCcHHHHHHHH
Q 044872 291 -REMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-------NTFVGLLCGC---THAGLVDEGRQFF 356 (604)
Q Consensus 291 -~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~ 356 (604)
+.+... |-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+=-+| ....+++.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 233333 5567777777777889999999999999875 66632 1222222222 3468899999999
Q ss_pred HHchhhcCCCCc-hHHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 357 NSMSRVFSLTPM-IEHYGCMVDLL----GRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 357 ~~~~~~~~~~p~-~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
+...+ +.|. ..++.-+--+| .|+.++..|.+++... |.-|...++...|..-.+.++++....++++.++.
T Consensus 390 q~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 98884 4554 55665554444 4789999999999876 88899999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 431 EPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
+|.+..++...+..-...|++|.|+.+|....+....-.|..-|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 99999999999999999999999999999999876555565556
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.5e-10 Score=110.62 Aligned_cols=395 Identities=12% Similarity=0.121 Sum_probs=234.2
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
.++++..|.++|++.+..+.+ +...|...+..-.+...+..|+.+++.++..-...| ..|-.-+.|=-..|.+..|++
T Consensus 85 sq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHH
Confidence 356677899999999876533 666677777777788889999999999888633323 334444555556689999999
Q ss_pred HhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC-
Q 044872 87 VFDDIP--DKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA-GK- 162 (604)
Q Consensus 87 ~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~- 162 (604)
+|++-. +|+..+|++.|..=.+-..++.|..+|++..- +.|+..+|....+.=.+.|....+..+++.+++. |-
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 998754 48999999999999999999999999999876 5689999988888888899999999999888764 21
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHccC----CCC-------------------------------------------
Q 044872 163 GRNVFVATSLVDLYAKCGNMEKARRVFDQM----PEK------------------------------------------- 195 (604)
Q Consensus 163 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~----~~~------------------------------------------- 195 (604)
..+...++++...=.++..++.|.-+|+-. +..
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 123345666666666677777777776432 221
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HccCchHHHHHHHHHHHHcCCCC
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEY-------YTMVGVLSAC---ASLGALELGVWASSFMERNEFLS 265 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~ 265 (604)
|-.+|-..+..--..|+.+...++|++.... ++|-. ..|.-+=-+| ....+.+.+.+++...++. ++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 2223444444444455555555555555443 33311 1111111111 2334555555555555541 122
Q ss_pred chhHHHHHHHHH----HhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 044872 266 NPVLGTTLIDMY----AKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVG 338 (604)
Q Consensus 266 ~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 338 (604)
...++.-+=-+| .++.++..|.+++....- |...++...|..-.+.++++....+|++.++ ..| |..++..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHH
Confidence 233333332222 245555555555554432 3344444455555555556666666666655 334 3345555
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLA 409 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~ 409 (604)
....-...|+.+.|..+|+.+.+...+......|.+.|+.=...|.++.|..+++.+ ...+...+|-++..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~ 548 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 554445556666666666655543222222334555555555566666666666555 22333445554443
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.3e-11 Score=115.55 Aligned_cols=213 Identities=18% Similarity=0.189 Sum_probs=168.6
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHH
Q 044872 245 LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVF 321 (604)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 321 (604)
.|+.-.+..-++.+++....++. .|--+..+|....+.++..+.|+...+ .|+.+|..-...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46666777777777776544332 255566678888888888888887764 35667777777777778899999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 044872 322 GQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP 399 (604)
Q Consensus 322 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 399 (604)
++.+. +.|+. ..|..+..+..+.+.++++...|+..+++ ++.-+++|+.....+..+++++.|.+.|+.. .+.|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99988 67754 67888888888999999999999999974 4555788999999999999999999999887 4444
Q ss_pred C---------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 N---------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+ +.+-.+++.. .-.+++..|..+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 2233333333 2348999999999999999999999999999999999999999999997754
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=3.3e-12 Score=120.84 Aligned_cols=423 Identities=14% Similarity=0.129 Sum_probs=278.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHhccC----CCCC----cccHHHHHHHH
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFV-KTSLLNLYVHCGYLADALKVFDDI----PDKN----VVSWTAIISGY 106 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~~----~~~~----~~~~~~li~~~ 106 (604)
|.+.|.......+|+..++-+++...-|+.-. -..+.+.|.+...+.+|.+.++.. +.-+ +...|.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 33444445567788888888888776665433 233456777888899999887543 3212 22345555567
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC------------ChhHHHHHH-
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR------------NVFVATSLV- 173 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~------------~~~~~~~li- 173 (604)
.+.|.++.|+..|+...+. .|+..+-..++-.+...|+-++.++.|..++.....+ +....|.-+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 8899999999999998774 6787776666666667899999999999998754322 222222221
Q ss_pred ----HHHHhcCC--HHHHH----HHHccCCCCCcc---hHH------------------HHHHHHHhCCCchHHHHHHHH
Q 044872 174 ----DLYAKCGN--MEKAR----RVFDQMPEKDIV---SWS------------------SMIQGYASNGFPKEALDMFYN 222 (604)
Q Consensus 174 ----~~y~~~g~--~~~A~----~~~~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~~ 222 (604)
.-.-+... .+++. ++..-+..||-. -|. .-...|.++|+++.|+++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 11111111 11221 222222223211 111 112357899999999999988
Q ss_pred HHHCCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc
Q 044872 223 MQRENLKPEYYTMV--GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV 300 (604)
Q Consensus 223 m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 300 (604)
..+..-+.-...-+ .++.-...-.++..|.++-+..+... .-++...+.-.+.-...|++++|...|++....|...
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 76643222222212 22222233446777777777665432 1122222222223345799999999999999888766
Q ss_pred HHHHHH---HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 301 WNAVVS---GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 301 ~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.+... -++.|+...+-|.+
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHH
Confidence 555543 467789999999999988762 233556778888899999999999999988763 34446888999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHH
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 455 (604)
+|-+.|+-..|.+..-.- ..-| +..+..-|...|....-.++++..|+++--+.|+-+.-...++.++.+.|++..|.
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~ 680 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF 680 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999875443 4334 55566656667777788899999999998888965433344566778999999999
Q ss_pred HHHHHHhhC
Q 044872 456 KIRSMMGDK 464 (604)
Q Consensus 456 ~~~~~m~~~ 464 (604)
.+++..-.+
T Consensus 681 d~yk~~hrk 689 (840)
T KOG2003|consen 681 DLYKDIHRK 689 (840)
T ss_pred HHHHHHHHh
Confidence 999988654
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=1.1e-11 Score=125.41 Aligned_cols=287 Identities=15% Similarity=0.086 Sum_probs=179.5
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 044872 109 EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRV 188 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (604)
.|+++.|.+.+....+..-.| ...|.....+....|+++.+...+..+.+....+...........+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588888887776654432111 2223333444467788888888888877643222222222346677888888888888
Q ss_pred HccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC
Q 044872 189 FDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS 265 (604)
Q Consensus 189 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (604)
++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~-------------------------- 228 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE-------------------------- 228 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH--------------------------
Confidence 887755 24556777778888888888888888888876544221 111000
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
...+..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+ .+||.... ++.+
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~ 303 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIP 303 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHh
Confidence 00111222222233344555555555543 3555666677777777778888777777766 34444211 2233
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
....++.+++.+..+...+. .+-|.....++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|.
T Consensus 304 ~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred hccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 33457777888777777753 2234555667778888888888888888877 66788887777888888888888888
Q ss_pred HHHHHHHcc
Q 044872 422 HVLNQLIAL 430 (604)
Q Consensus 422 ~~~~~~~~~ 430 (604)
.++++.+.+
T Consensus 382 ~~~~~~l~~ 390 (398)
T PRK10747 382 AMRRDGLML 390 (398)
T ss_pred HHHHHHHhh
Confidence 888887654
No 40
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.3e-10 Score=109.61 Aligned_cols=348 Identities=11% Similarity=0.039 Sum_probs=233.4
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCC----CCCcccHHHHHH
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIP----DKNVVSWTAIIS 104 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~ 104 (604)
+..+|..+|.++++-...+.|.+++++......+.+..++|.+|.+-+-.-+ .++..+|. .||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 6678999999999988999999999988887778888999999866543333 34444443 489999999999
Q ss_pred HHHhCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH-HHHHHHHHHH----hCCC----CChhHHHH
Q 044872 105 GYINEGNLEE----AINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLST-AKWIHGYVNE----AGKG----RNVFVATS 171 (604)
Q Consensus 105 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~----~~~~~~~~ 171 (604)
+.++.|+++. |++++.+|++-|+.|...+|..++..+.+.++..+ +..+...+.. ..+. .|...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 9999998764 56788889999999999999999999888887754 4444444433 2222 24556667
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCC--------C---cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 172 LVDLYAKCGNMEKARRVFDQMPEK--------D---IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
-++.|.+..+.+-|.++-.-.... + ..-|..+....++....+.-+..|+.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 777788888888888876544321 1 12355667777888888889999999988778889999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc---HHHHHHHHHhCCCHHHH
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV---WNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A 317 (604)
|....+.++...+++..++..|........--++..+++.. ..|+... +.....-++ ..-.+..
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~e~~ 508 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIKEAY 508 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999988888775443333332222222221 0122111 111111111 0011111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH---HHHhhcCCHHHHHHHHHh
Q 044872 318 FGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV---DLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 318 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li---~~~~~~g~~~~A~~~~~~ 394 (604)
...-.+|.+....| ...+.++-.+.+.|..++|.++|..+.++..-.|.....++|+ +.-.+......|...++-
T Consensus 509 e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred HhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22233455544443 3445555557788888888888887765545555555555444 444566777777777776
Q ss_pred C
Q 044872 395 M 395 (604)
Q Consensus 395 ~ 395 (604)
|
T Consensus 587 a 587 (625)
T KOG4422|consen 587 A 587 (625)
T ss_pred H
Confidence 6
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=4.5e-12 Score=126.32 Aligned_cols=273 Identities=16% Similarity=0.122 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC------CCcchHHHHHHHHHhCCCchHHHHHH
Q 044872 147 LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE------KDIVSWSSMIQGYASNGFPKEALDMF 220 (604)
Q Consensus 147 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 220 (604)
..+|...|......- .-+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+--+-+ +-++..+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 445555665533332 22335556666677777777777777766644 244455555543221 1122222
Q ss_pred H-HHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--
Q 044872 221 Y-NMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-- 297 (604)
Q Consensus 221 ~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 297 (604)
. .+... .|+ .+.+|.++.++|+-.++.+.|.+.|++..+-|
T Consensus 410 aq~Li~~--~~~----------------------------------sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 410 AQDLIDT--DPN----------------------------------SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHhh--CCC----------------------------------CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 2 22221 111 23444555555555555555555555554422
Q ss_pred -cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHH
Q 044872 298 -QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGC 374 (604)
Q Consensus 298 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (604)
..+|+.+..-+.....+|.|...|+..+. +.|.. ..|-.+...|.+.++++.|+-.|+.+. .+.|. .....+
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~ 528 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCH 528 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhh
Confidence 23444444445555556666666665544 33433 244455556666666666666666665 44554 334445
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWN 452 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 452 (604)
+...+.+.|+.++|+++++++ -..| |+..---....+...+++++|...++++.++-|++...|..++.+|-+.|+.+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 556677777777777777776 2233 33332333445566778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhhCC
Q 044872 453 DAAKIRSMMGDKG 465 (604)
Q Consensus 453 ~A~~~~~~m~~~~ 465 (604)
.|..-|.-+.+..
T Consensus 609 ~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 609 LALLHFSWALDLD 621 (638)
T ss_pred HHHHhhHHHhcCC
Confidence 8888888776643
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=3e-11 Score=123.03 Aligned_cols=291 Identities=13% Similarity=0.076 Sum_probs=181.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSF-SIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKA 185 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 185 (604)
...|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+...+..+.+....+...+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3468888888888776654 34332 33344455667788888888888776654333333444457777778888888
Q ss_pred HHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 044872 186 RRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNE 262 (604)
Q Consensus 186 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (604)
...++.+.+ | +...+..+...|.+.|++++|.+.+..+.+.++.++. .+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 877777754 2 4456667777778888888888888777776543221 1111000
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH---
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTF--- 336 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--- 336 (604)
..+..+++.-......+...+.++..++ .++..+..+...+...|+.++|.+++++..+. .||....
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0011111111112223344444555443 36667777777788888888888888888773 4444321
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHh
Q 044872 337 VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKS--M-PMEPNAIVWGALLAGCRL 413 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~ 413 (604)
..........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122335677788888887775433333224556778888888999999998883 3 567888888888888888
Q ss_pred cCChHHHHHHHHHHHc
Q 044872 414 HKKTDLAEHVLNQLIA 429 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~ 429 (604)
.|+.++|.+++++.++
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999988888754
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=4.6e-11 Score=121.04 Aligned_cols=275 Identities=9% Similarity=0.021 Sum_probs=196.1
Q ss_pred cCCHHHHHHHHccCCCC--CcchHHHH-HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCchHHHHH
Q 044872 179 CGNMEKARRVFDQMPEK--DIVSWSSM-IQGYASNGFPKEALDMFYNMQRENLKPEYYTMV--GVLSACASLGALELGVW 253 (604)
Q Consensus 179 ~g~~~~A~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 253 (604)
.|+++.|++.+....+. ++..+..+ .....+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777765542 22222222 33446778888888888887663 44443322 22456677788888888
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc-----------cHHHHHHHHHhCCCHHHHHHHHH
Q 044872 254 ASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV-----------VWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
.++.+.+... .++.+...+...|.+.|++++|.+++..+.+.... .|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888777663 35677778888888888888888888887753221 23333433344455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 044872 323 QLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA 401 (604)
Q Consensus 323 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 401 (604)
.+.+. .+.+......+..++...|+.++|...++...+. .|+.... ++.+....++.+++.+..++. ...|+.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66432 3446678888899999999999999999988753 4554322 223334569999999999888 555654
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 402 -IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 402 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..+..+...|...+++++|.+.|+++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467788889999999999999999999999965 5688999999999999999999997754
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=2e-10 Score=116.98 Aligned_cols=218 Identities=9% Similarity=-0.043 Sum_probs=134.4
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHH----HHHHHHHhCCC
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWN----AVVSGLSMNGY 313 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~ 313 (604)
.....|+++.|...++.+.+... .++.+...+..+|...|++++|.+.+..+.+. +...+. ....++...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444331 13344444555555555555555555544432 111111 01111122233
Q ss_pred HHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHH-HHHHHHH--hhcCCHHH
Q 044872 314 VKVAFGVFGQLEKCGI---QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY-GCMVDLL--GRSGQLDE 387 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~--~~~g~~~~ 387 (604)
.+++.+.+..+..... +.+...+..+...+...|+.++|.+.++...+. .|+.... ..++..+ ...++.+.
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHH
Confidence 3334445555554321 126678888889999999999999999999864 3443310 0122222 34578888
Q ss_pred HHHHHHhC-CCCCCH---HHHHHHHHHHHhcCChHHHHHHHH--HHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 388 AHELIKSM-PMEPNA---IVWGALLAGCRLHKKTDLAEHVLN--QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 388 A~~~~~~~-~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+.+.+++. ...|+. ....++...|.+.|++++|.+.|+ ...+..|++ ..+..++.++.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888776 444433 566788889999999999999999 577788865 45779999999999999999999986
Q ss_pred hh
Q 044872 462 GD 463 (604)
Q Consensus 462 ~~ 463 (604)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 54
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1e-11 Score=123.82 Aligned_cols=244 Identities=14% Similarity=0.099 Sum_probs=188.8
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHH-HHH
Q 044872 212 FPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEF--LSNPVLGTTLIDMYAKCGRMAQ-ACK 288 (604)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~-A~~ 288 (604)
+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.=.+.. |..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 457788888774443 333345566677788888888888888888766431 2256677766544333222211 222
Q ss_pred HHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 044872 289 VFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP 367 (604)
Q Consensus 289 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 367 (604)
+.+ +....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... + .
T Consensus 413 Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~--~ 484 (638)
T KOG1126|consen 413 LID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---G--V 484 (638)
T ss_pred HHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---c--C
Confidence 222 2234678999999999999999999999999998 778 56788888888888999999999999776 3 4
Q ss_pred chHHHHHH---HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 368 MIEHYGCM---VDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 368 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
+..+|+++ .-.|.+.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|+.++++++-++|.|+..-+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 55566654 56789999999999999998 78884 456666777789999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 044872 443 NIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++...+++++|...++++++-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999873
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=5.9e-13 Score=128.77 Aligned_cols=248 Identities=15% Similarity=0.152 Sum_probs=68.7
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHH-HHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFP-FVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
+.+.|++++|++++.+.......|+...|. .+...+...++.+.|.+.++.++..+.. ++..+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccc
Confidence 445566666666664433322122222222 2333344455666666666666554422 34445555544 45566666
Q ss_pred HHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD--KNVVSWTAIISGYINEGNLEEAINMFRRLLHRG-LKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+++...|......+.+.|+.++|...++.+++.
T Consensus 96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6655554322 344455555566666666666666666654322 2234444555555555666666666666666655
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP---EKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVG 237 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 237 (604)
. +.|..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+..|++..... +.|..+...
T Consensus 176 ~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~ 253 (280)
T PF13429_consen 176 D-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLA 253 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccc
Confidence 3 2245555556666666666665544444432 2344555556666666666666666666555431 123333444
Q ss_pred HHHHHHccCchHHHHHHHH
Q 044872 238 VLSACASLGALELGVWASS 256 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~ 256 (604)
+..++...|+.+.|.++..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHT-------------
T ss_pred ccccccccccccccccccc
Confidence 4444444444444444433
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.7e-09 Score=99.90 Aligned_cols=281 Identities=14% Similarity=0.117 Sum_probs=148.4
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCC------cchHHHHHHHHHhCCC
Q 044872 139 TACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKD------IVSWSSMIQGYASNGF 212 (604)
Q Consensus 139 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~ 212 (604)
.++-.....+++.+=.......|++.+...-+....++-...+++.|+.+|+++.+.| ..+|..++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 3444444555666666666666666555555555555556666666666666665432 23444333 222221
Q ss_pred chHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 213 PKEALDMFYNMQR--ENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVF 290 (604)
Q Consensus 213 ~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (604)
. .+.++.+-.. ...+| .|...+.+-|+-.++.++|...|++.++.+.. ...+|+.+..-|....+...|..-+
T Consensus 313 s--kLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred H--HHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1 1111111111 12222 34445555555556666666666666655422 3455555666666666666666666
Q ss_pred HhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 044872 291 REMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 291 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
+...+ .|-..|-.+.++|...+...=|+-.|++... .+| |...+.+|..+|.+.++.++|+..|.....- -+
T Consensus 388 RrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~d 463 (559)
T KOG1155|consen 388 RRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GD 463 (559)
T ss_pred HHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cc
Confidence 65543 3455666666666666666666666666665 445 3456666666666666666666666655532 12
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-------P-MEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
.+...+..|.++|.+.++.++|...|++. + +.|... .---|..-+.+.+++++|.........-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 23455566666666666666666655543 1 122122 1111333345566666666555554443
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.1e-09 Score=101.68 Aligned_cols=252 Identities=13% Similarity=0.101 Sum_probs=188.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFL--SNPVLGTTLIDMYAKCG 281 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g 281 (604)
..+|-...+.+++++-.......|+.-....-+....+.-...++++|..+|+.+.+...- .|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3445555566777777777776666544444444444555667888888888888876421 2455666554 33332
Q ss_pred --CHH-HHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHH
Q 044872 282 --RMA-QACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 282 --~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
++. -|..+++ +.+--+.|.-.+..-|.-.++.++|...|++..+ +.|.. ..++.+..-|....+-..|.+-++
T Consensus 312 ~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222 2222222 2222345555566677788899999999999988 56765 466667778999999999999999
Q ss_pred HchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 358 SMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 358 ~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.++ .+.| |-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|++.|.+++..+..+
T Consensus 389 rAv---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAV---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHH---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 988 4445 6778899999999999999999999988 6666 67799999999999999999999999999888777
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 435 SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 435 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..++..|+++|-+.++.++|...+.+-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88999999999999999999999988776
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=2.8e-10 Score=116.64 Aligned_cols=439 Identities=13% Similarity=0.112 Sum_probs=248.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 044872 16 EFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKN 95 (604)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 95 (604)
.++-.+...|+.|+.+||.++|..|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999888 9999988878888889999999988888887766 678
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHH-HHH-------CCCCCChhhHHHHHHHHhcCCChHHH---------HHHHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRR-LLH-------RGLKPDSFSIVRVLTACTQLGDLSTA---------KWIHGYVN 158 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~g~~~~a---------~~~~~~~~ 158 (604)
..+|+.|..+|.+.|+... ++..++ |.. .|+..-..-+...++.| . +....+ +.++...+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p-~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCC-P-HSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccC-c-ccchhHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999765 333333 221 22211111111111111 1 111111 11222222
Q ss_pred HhCCCCChhHHHH----HHHHHH-hcCCHHHHHHHHccCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH
Q 044872 159 EAGKGRNVFVATS----LVDLYA-KCGNMEKARRVFDQMPE-KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEY 232 (604)
Q Consensus 159 ~~g~~~~~~~~~~----li~~y~-~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 232 (604)
+.+....+..++. ++.-.. ....+++-........+ ++..++.+++.+-..+|+.+.|..++.+|.+.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2221000000000 011111 11123333333333333 66677777777777777777777777777777776666
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH------------------------HHH
Q 044872 233 YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQ------------------------ACK 288 (604)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~------------------------A~~ 288 (604)
.-|-.++-+ .++......+..-|...|+.|+..++.-.+-...+.|.... |.+
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 666555544 56666666666667777777776666544443333222111 111
Q ss_pred HHH---------hcCC-------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCH-HHHHHHHHHH------
Q 044872 289 VFR---------EMKD-------KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC--GIQPNG-NTFVGLLCGC------ 343 (604)
Q Consensus 289 ~~~---------~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~-~t~~~ll~a~------ 343 (604)
.++ ..++ ....+|...+. ...+|+.++..++-..|..- ...|+. ..|..++.-|
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 111 1111 11233433222 12244444444433333211 011111 1111111111
Q ss_pred --------------------------------------------------------------------------hccCcH
Q 044872 344 --------------------------------------------------------------------------THAGLV 349 (604)
Q Consensus 344 --------------------------------------------------------------------------~~~g~~ 349 (604)
.+.-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111111
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP-----MEPNAIVWGALLAGCRLHKKTDLAEHVL 424 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 424 (604)
.++...-+... .. .-...|..||+.+....+.++|..+.++.. +.-|..-+..+.+...+.+....+..++
T Consensus 476 lK~l~~~ekye-~~---lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 476 LKILCDEEKYE-DL---LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHH-HH---HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 11111111000 00 001457888888888999999999998883 2235556778888889999999999999
Q ss_pred HHHHcc---CCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 425 NQLIAL---EPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 425 ~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
+++.+. .|.......-+.+..+..|+.+...++++-+...|+.. .|.-|
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 888752 34444566678888899999999999999999888865 35545
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4e-09 Score=103.49 Aligned_cols=257 Identities=12% Similarity=0.028 Sum_probs=200.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 200 WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
...-..-+...+++.+.++++....+.. ++....+..=|.++...|+...-..+-..+++.- +..+.+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence 3344556777899999999999988742 3444444444556777777766666656666543 3456778888888888
Q ss_pred cCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 044872 280 CGRMAQACKVFREMKDKD---QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
.|+..+|++.|.+...-| ...|-.....|+-.|..+.|+..+...-+ .-| ....+.-+.--|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 899999999999876544 36899999999999999999999988766 222 223344455568889999999999
Q ss_pred HHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 044872 356 FNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM--P------MEP-NAIVWGALLAGCRLHKKTDLAEHVLN 425 (604)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 425 (604)
|.... ++-| |+.+.+-+.-+....+.+.+|..+|+.. + .++ -..+|+.|..+|++.+.+++|+..++
T Consensus 403 f~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 403 FKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99887 5566 4556666666666788899999998765 1 112 34578888999999999999999999
Q ss_pred HHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 426 QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 426 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.+.+.|.++.+|..++-+|...|+++.|...|.+...
T Consensus 480 ~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 480 KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998865
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=2e-08 Score=99.95 Aligned_cols=445 Identities=11% Similarity=0.113 Sum_probs=239.4
Q ss_pred hcCCchHHHHHHHHHHhC-CCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNE-GFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADAL 85 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 85 (604)
.+|+.......|++.+.. .+......|...++-....+-++.+..++..-++. ++..-+--|..+++.+++++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 444555555555554432 12223334555555555555555666666655442 2223455556666667777776
Q ss_pred HHhccCCCC----------CcccHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCCCh--hhHHHHHHHHhcCCChHHH
Q 044872 86 KVFDDIPDK----------NVVSWTAIISGYINEGNLEE---AINMFRRLLHRGLKPDS--FSIVRVLTACTQLGDLSTA 150 (604)
Q Consensus 86 ~~f~~~~~~----------~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a 150 (604)
+.+..+... +-..|+.+-...+++-+.-. .-.+++.+... -+|. ..|.+|.+-|.+.|.++.|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 666655432 23346655555555433222 22233333321 2333 3466777777777777777
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------------------HHHHHHHHccCCCC-------------
Q 044872 151 KWIHGYVNEAGKGRNVFVATSLVDLYAKCGN----------------------MEKARRVFDQMPEK------------- 195 (604)
Q Consensus 151 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------------------~~~A~~~~~~~~~~------------- 195 (604)
..++++.++.- .++.-++.+-+.|+.... ++-...-|+.+.++
T Consensus 268 rDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 77777766642 233334444444443211 11112222222110
Q ss_pred --CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc-
Q 044872 196 --DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE------YYTMVGVLSACASLGALELGVWASSFMERNEFLSN- 266 (604)
Q Consensus 196 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 266 (604)
++..|..-+. ...|+..+-...|.+..+. +.|- ...+..+...|-+.|+++.|+.+|+...+.....-
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 1122222221 2245566666666666553 3332 23456667777788888888888888777554432
Q ss_pred --hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------------------CcccHHHHHHHHHhCCCHHHHHHHHHH
Q 044872 267 --PVLGTTLIDMYAKCGRMAQACKVFREMKD-K--------------------DQVVWNAVVSGLSMNGYVKVAFGVFGQ 323 (604)
Q Consensus 267 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 323 (604)
..+|..-.++-.+..+++.|.++.+.... | +...|...+..--..|-++....+|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45566666667777777777777766532 1 222344444433344444444444444
Q ss_pred HHHCC----------------------------------CCCCHH-HHHHHHHHH---hccCcHHHHHHHHHHchhhcCC
Q 044872 324 LEKCG----------------------------------IQPNGN-TFVGLLCGC---THAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 324 m~~~g----------------------------------~~p~~~-t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
+.... -.|+.. .|+..|.-+ .....++.|..+|++..+ +.
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~C 580 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GC 580 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cC
Confidence 43322 124432 233333222 223467888888888875 66
Q ss_pred CCchH--HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch--h
Q 044872 366 TPMIE--HYGCMVDLLGRSGQLDEAHELIKSM--PMEPNA--IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG--N 437 (604)
Q Consensus 366 ~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~ 437 (604)
+|... .|-.....=.+-|....|++++++. ..++.. ..||..|.--...=-+.....+|+++++.-|++-. .
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~m 660 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREM 660 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHH
Confidence 66432 2222222233457778888888887 333332 36777776544433455567788888887776432 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..-.+++-.+.|..+.|+.++..-.+-
T Consensus 661 clrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 661 CLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 334678888999999999999877653
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=1.7e-09 Score=101.98 Aligned_cols=292 Identities=15% Similarity=0.116 Sum_probs=198.5
Q ss_pred HHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 102 IISGYIN--EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179 (604)
Q Consensus 102 li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (604)
+..+..+ .|+|..|.++..+-.+.+-.| ...|.....+.-..||.+.+-+++.++.+..-+++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 3444433 589999999998877765443 3446666677788999999999999998875577788888888889999
Q ss_pred CCHHHHHHHHccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 044872 180 GNMEKARRVFDQMP---EKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASS 256 (604)
Q Consensus 180 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 256 (604)
|+++.|..-.+++. .+++........+|.+.|++.+...++..|.+.|+--|...- ++
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l-- 227 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL-- 227 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH--
Confidence 99999988777654 367778888999999999999999999999988765443211 00
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 044872 257 FMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 257 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+-
T Consensus 228 ---------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L 298 (400)
T COG3071 228 ---------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL 298 (400)
T ss_pred ---------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH
Confidence 122333343333333333333445555542 34555556666677777788888877777776666662
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCR 412 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~ 412 (604)
. .+-.+.+.++.+.-++..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.
T Consensus 299 ~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~ 372 (400)
T COG3071 299 C----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD 372 (400)
T ss_pred H----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 2 22345566666666666665555444444 45666777777777777777777765 66677777777777777
Q ss_pred hcCChHHHHHHHHHHH
Q 044872 413 LHKKTDLAEHVLNQLI 428 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~ 428 (604)
+.|+.+.|.+..++.+
T Consensus 373 ~~g~~~~A~~~r~e~L 388 (400)
T COG3071 373 QLGEPEEAEQVRREAL 388 (400)
T ss_pred HcCChHHHHHHHHHHH
Confidence 7777777777777665
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.1e-09 Score=100.06 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=120.0
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-C--hhHHHHHHHHHHhcCChHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDC-D--EFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~ 83 (604)
-+.++++|+++|-+|.+.++. +..+-.+|-+.+.+.|..+.|..+|+.+.++.--+ + ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 345667777777777664322 33344455566666777777777777766542111 0 1223345555666777777
Q ss_pred HHHHhccCCCCC---cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHH
Q 044872 84 ALKVFDDIPDKN---VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGY 156 (604)
Q Consensus 84 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~ 156 (604)
|+.+|..+.+.+ ..+..-|+..|-+..+|++|+++-+++.+.+-.+..+ .|.-+...+....+.+.|..++..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 777776665522 2344456677777777777777777666654443322 122333333444555566666665
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcc----hHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 044872 157 VNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIV----SWSSMIQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++....+.++.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 55543 223334444555555666666666666555554432 3444555566666666666555555553
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=2.7e-10 Score=106.92 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=162.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788889999999999999988754 245677888889999999999999999998843 2345677778888
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 420 (604)
+...|++++|.+.++...+..........+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 89999999999999998854222233556777888899999999999999887 4444 456788888899999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
...++++++..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888999999999999999999887764
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.8e-09 Score=98.73 Aligned_cols=267 Identities=12% Similarity=0.124 Sum_probs=160.8
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHH
Q 044872 109 EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR---NVFVATSLVDLYAKCGNMEKA 185 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A 185 (604)
+.++++|+++|-+|.+.. +-+..+-.++.+.+.+.|..+.|.++|.-+.++.--+ -....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888899888888742 1233455667778888888888888888887642111 123344567778888888888
Q ss_pred HHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 044872 186 RRVFDQMPEKDI---VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNE 262 (604)
Q Consensus 186 ~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (604)
+.+|..+.+... .+..-|+..|-+..+|++|++.-+++...+-.+..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 888888776333 34556778888888888888888877775544332211
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc---ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ---VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
...|.-|...+.-..+.+.|..++.+..+.|. ..--.+...+...|++..|.+.++...+.+..--..+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 12233344444445566666666666554322 22223445566777777777777777775432233456666
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL-IKSMPMEPNAIVWGALLAG 410 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~ 410 (604)
..+|.+.|+.+++...+..+.+. .+....-..+.+.-....-.+.|... .+.+.-+|+...+..|+..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 77777777777777777766643 23333333333333333333344333 3344556666666555554
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=9.2e-11 Score=120.11 Aligned_cols=272 Identities=13% Similarity=0.145 Sum_probs=199.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 044872 218 DMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD 297 (604)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 297 (604)
.++..|...|+.|+.+||.+++.-|+..|+.+.|- ++..|.-.....+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46677888999999999999999999999999999 9999998888889999999999999999888776 678
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
..+|+.|..+|.++|+... ++..++ ....+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999865 333333 222344455666666666666655432334556553 4455
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 378 LLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHK-KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.+.-.|-++.+++++..+|...-......+++-+.... .+++-..+.+...+ .| ++.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 66778889999999999864321112222344444333 34444444444444 45 67899999999999999999999
Q ss_pred HHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCccCCcccccccchhhh
Q 044872 457 IRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGFVPTTDHVLFDIEEEEK 529 (604)
Q Consensus 457 ~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~ 529 (604)
+...|+++|+.-.+.+.|-.+-| ... ..-++.+.+-|++.|+.|+..|....+.++-+
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~~~-------~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------INA-------AQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------Ccc-------chHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 99999999998888888854433 111 12245678889999999999998766655544
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.1e-11 Score=84.20 Aligned_cols=50 Identities=34% Similarity=0.755 Sum_probs=47.4
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ 143 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (604)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.1e-08 Score=91.18 Aligned_cols=365 Identities=12% Similarity=0.043 Sum_probs=234.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCC-CcccHHHHHHHHHhCCC--hh-------------HHHHHHHHHHHCC----
Q 044872 67 VKTSLLNLYVHCGYLADALKVFDDIPDK-NVVSWTAIISGYINEGN--LE-------------EAINMFRRLLHRG---- 126 (604)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~--~~-------------~A~~~~~~m~~~g---- 126 (604)
.--..+..|...++-+.|.....+.+.. ...--|.|+.-+-+.|. .+ -|++.+.-..+.+
T Consensus 99 ~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 99 QRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcch
Confidence 3445667777778888888888887753 22333334333333221 11 1222222222222
Q ss_pred -----------CCCChhhHHHHHHHHhc--CCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHccC
Q 044872 127 -----------LKPDSFSIVRVLTACTQ--LGDLSTAKWIHGYVNEA-GKGRNVFVATSLVDLYAKCGNMEKARRVFDQM 192 (604)
Q Consensus 127 -----------~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 192 (604)
+.|+..+....+.+++. .++-..+.+.+-.+... -++.|+....++.+.|...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 23333444444554433 33444444444444333 35678888999999999999999999999987
Q ss_pred CCCCcchHHHH---HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhH
Q 044872 193 PEKDIVSWSSM---IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVL 269 (604)
Q Consensus 193 ~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 269 (604)
..-|+.+...| .-.+.+.|++++.-.+...+.... +-....+..-+...-..++++.|..+-+..++.... +...
T Consensus 259 ~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~a 336 (564)
T KOG1174|consen 259 LCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEA 336 (564)
T ss_pred hhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchH
Confidence 65444433332 334567788888777776665431 112222222223334456777777777766665422 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLL-CGCT- 344 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~- 344 (604)
+-.-...+...|+.++|.-.|+.... .+..+|..|+..|...|++.+|..+-+...+. ++-+..+...+. ..|.
T Consensus 337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeecc
Confidence 33334566678999999999987653 37789999999999999999998887776552 333445554442 2232
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
....-++|..+++... .+.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++..+.+++|..
T Consensus 416 dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred CchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHH
Confidence 3344578888888766 55676 455667778888999999999999887 667899999999999999999999999
Q ss_pred HHHHHHccCCCCchh
Q 044872 423 VLNQLIALEPWNSGN 437 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~ 437 (604)
.|..++.++|++..+
T Consensus 493 ~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 493 YYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHhcCccchHH
Confidence 999999999987433
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.5e-11 Score=83.53 Aligned_cols=50 Identities=30% Similarity=0.616 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8e-08 Score=95.00 Aligned_cols=434 Identities=12% Similarity=0.100 Sum_probs=261.4
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHH--HHHHHH--hc
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTS--LLNLYV--HC 78 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~--~~ 78 (604)
+-+.++|++++|+..-.+++..+ +-+...+..-+-+..+.+.++.|..+.+ ..+. ..+++. +=.+|+ +.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHc
Confidence 34567899999999999999876 3355666666677888888988885433 2221 122222 234554 67
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHhcCCChHHHHHHHHH
Q 044872 79 GYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSF--SIVRVLTACTQLGDLSTAKWIHGY 156 (604)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~ 156 (604)
+..|+|...++.....+..+...-...+-+.|++++|+++|+.+.+.+.. |.. .-..++.+-.. ... ..
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~a~-------l~~-~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVAAA-------LQV-QL 163 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHh-------hhH-HH
Confidence 99999999999665555556666677888999999999999999876542 221 11122211110 011 01
Q ss_pred HHHhCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHccC--------CCCCcc----------hHHHHHHHHHhCCCchHH
Q 044872 157 VNEAGKGR--NVFVATSLVDLYAKCGNMEKARRVFDQM--------PEKDIV----------SWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 157 ~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~--------~~~~~~----------~~~~li~~~~~~g~~~~A 216 (604)
+......| +-..+-.....+...|++.+|+++++.. .+.|.. .---|.-.+...|+-.+|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 11222222 1222223455678889999999999876 221111 112244567788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH---HHHHHccCchHH--HHHHHHH-----------HHHcCCCCchhHHHHHHHHHHhc
Q 044872 217 LDMFYNMQRENLKPEYYTMVGV---LSACASLGALEL--GVWASSF-----------MERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
..++....+.. .+|....... |.+.....++.. ....++. .+...-......-++++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99999998864 3454322221 222222222211 1111111 111111112233355566554
Q ss_pred CCHHHHHHHHHhcCCCC-cccHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHH
Q 044872 281 GRMAQACKVFREMKDKD-QVVWNAVVSGLS--MNGYVKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 281 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
+..+.+.++-...+... ...+..++.... +.....+|.+++...-+. .|.. ......+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45567777777666532 334444444322 223467777777776653 3444 3444555667789999999999
Q ss_pred HH--------HchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCChH
Q 044872 356 FN--------SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--------PMEPNA-IVWGALLAGCRLHKKTD 418 (604)
Q Consensus 356 ~~--------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~ll~~~~~~~~~~ 418 (604)
+. .+.+. +..| .+..+++.+|.+.+.-+.|.+++.+. .-++.. .+|.-+..--.++|+-+
T Consensus 399 l~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILEA-KHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 44422 3333 45567788888888877676666554 222222 23444444456789999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 419 LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+|...++++.+.+|++......++.+|++. +.+.|..+-+.+
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999999999999999877 456666654433
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=7.2e-08 Score=98.24 Aligned_cols=397 Identities=17% Similarity=0.109 Sum_probs=257.6
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHH
Q 044872 60 GLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD-SFSIV 135 (604)
Q Consensus 60 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 135 (604)
.+..|..+|..|.-....+|+++.+.+.|++... .....|+.+-..|.-.|.-..|+.+++.-......|+ ...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998653 3456799999999999999999999988765433343 34444
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHh--CC--CCChhHHHHHHHHHHhcC-----------CHHHHHHHHccCCCC---C
Q 044872 136 RVLTACT-QLGDLSTAKWIHGYVNEA--GK--GRNVFVATSLVDLYAKCG-----------NMEKARRVFDQMPEK---D 196 (604)
Q Consensus 136 ~ll~~~~-~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~~~~~~~~---~ 196 (604)
..-+.|. +.+..+++..+-.+++.. +. ......+-.+.-+|...- ...++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445554 456777777777766662 11 122344444544554321 234566666666432 3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc-CCCCchhHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERN-EFLSNPVLGTTLID 275 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 275 (604)
+.+---+.--|+-.++.+.|++..++....+-.-+...+..+.-.++..+++..|..+.+..... |. |-.....-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 32222333446777889999999999888765667777777777788888899998888776542 21 1000001111
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------------------------------CCc-ccHHHHHHHHHhCCCHHHHHHHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKD-------------------------------KDQ-VVWNAVVSGLSMNGYVKVAFGVFGQ 323 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~-------------------------------~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 323 (604)
.-...++.++|......+.. .|. .++..+.. ... -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-
Confidence 11223444444433222210 011 11111111 111 01110000000
Q ss_pred HHHCCCC--CCH------HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044872 324 LEKCGIQ--PNG------NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 324 m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (604)
|...-+. |+. ..+......+...+..+++...+.+.. ++.| ....|.-....+...|.+++|.+.|..
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1111122 221 123344566788888999988887776 3344 355666667888899999999999887
Q ss_pred C-CCCCCHH-HHHHHHHHHHhcCChHHHHH--HHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 395 M-PMEPNAI-VWGALLAGCRLHKKTDLAEH--VLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 395 ~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
. .+.|+.+ +..++...+.+.|+...|.. ++..+++++|.++.+|..++.++-+.|+.++|.+.|....+.
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7 7778655 88899999999999888888 999999999999999999999999999999999999988764
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=9.1e-09 Score=97.08 Aligned_cols=275 Identities=11% Similarity=0.096 Sum_probs=189.6
Q ss_pred cCCHHHHHHHHccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 044872 179 CGNMEKARRVFDQMPEK---DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWAS 255 (604)
Q Consensus 179 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 255 (604)
.|++..|++...+-.+. .+..|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 47777777776664432 223344444555666777777777777665422344444555555666777777777777
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-----------cccHHHHHHHHHhCCCHHHHHHHHHHH
Q 044872 256 SFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-----------QVVWNAVVSGLSMNGYVKVAFGVFGQL 324 (604)
Q Consensus 256 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m 324 (604)
..+.+.+.. ++.+.....++|.+.|++.....++..+.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 776665533 56666777788888888888888888776642 236777776665555555555566665
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC
Q 044872 325 EKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN 400 (604)
Q Consensus 325 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~ 400 (604)
... .+-+...-.+++.-+...|+.++|.++.....++ +.+|+... + -...+-++.+.-.+..++. |..|
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCR---L-IPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHH---H-HhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 432 3445556667777888999999999999988865 66666221 1 2233455555444444433 4434
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..+.+|...|.+++.+.+|...|+..++..| +...|..++..+.+.|+..+|..++++...
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6888999999999999999999999999999 457999999999999999999999998764
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=4.7e-09 Score=106.10 Aligned_cols=232 Identities=16% Similarity=0.151 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHc-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERN-----EF-LSNP-VLGTTLIDMYAKCGRMAQACKVFREMKD-------K- 296 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~- 296 (604)
..|...+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566777888888888888888777653 21 1122 2234466778888888888888887653 1
Q ss_pred ---CcccHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcC--
Q 044872 297 ---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEK-----CGIQ-PNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS-- 364 (604)
Q Consensus 297 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 364 (604)
-..+++.|...|...|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 124667777788889998888877776643 1222 222 3456677788999999999999887655332
Q ss_pred CCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc-
Q 044872 365 LTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA- 429 (604)
Q Consensus 365 ~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~- 429 (604)
+.++ ..+++.|...|-..|++++|.++++++ +..+. ...++.|...|.+.++.+.|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 357899999999999999999999887 11222 34677788899999999999999988753
Q ss_pred ---cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 430 ---LEPWN---SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 430 ---~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+|+. ..+|..|+..|.+.|++++|.++......
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44544 46788999999999999999999988863
No 64
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=3e-06 Score=84.89 Aligned_cols=439 Identities=11% Similarity=0.113 Sum_probs=252.1
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcC
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG------LDCDEFVKTSLLNLYVHCG 79 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g 79 (604)
.+.+-++-++.++++-++.. | ..-.--+..+...+++++|.+.+..++... .+.+...|.-+.+..++.-
T Consensus 149 ~~~~lPets~rvyrRYLk~~--P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p 224 (835)
T KOG2047|consen 149 ESHGLPETSIRVYRRYLKVA--P--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP 224 (835)
T ss_pred HhCCChHHHHHHHHHHHhcC--H--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc
Confidence 35566778888888887743 3 235566777788899999999998875432 2344556666666655442
Q ss_pred Ch---HHHHHHhccCCCC--C--cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc---------
Q 044872 80 YL---ADALKVFDDIPDK--N--VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ--------- 143 (604)
Q Consensus 80 ~~---~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--------- 143 (604)
+. -....++..+..+ | ...|++|..-|.+.|.++.|.++|++.+..-+ ...-|..+..+|+.
T Consensus 225 ~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~ 302 (835)
T KOG2047|consen 225 DKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAK 302 (835)
T ss_pred chhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHH
Confidence 21 1233344444332 2 34688888888888888888888777655311 22222333322221
Q ss_pred ---------------------------------------------------------CCChHHHHHHHHHHHHhCCCC--
Q 044872 144 ---------------------------------------------------------LGDLSTAKWIHGYVNEAGKGR-- 164 (604)
Q Consensus 144 ---------------------------------------------------------~g~~~~a~~~~~~~~~~g~~~-- 164 (604)
.|+..+-...+.++++. +.|
T Consensus 303 me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 303 MELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred HhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCccc
Confidence 12222222233333322 111
Q ss_pred ----ChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCc-------chHHHHHHHHHhCCCchHHHHHHHHHHHCC------
Q 044872 165 ----NVFVATSLVDLYAKCGNMEKARRVFDQMPEKDI-------VSWSSMIQGYASNGFPKEALDMFYNMQREN------ 227 (604)
Q Consensus 165 ----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 227 (604)
-...|..+.+.|-..|+++.|+.+|++..+-+- .+|..-...=.++.+++.|+++.++....-
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 123577788888999999999999998766221 345555566667788888888877654311
Q ss_pred ----CCC-CHH------HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 044872 228 ----LKP-EYY------TMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD- 295 (604)
Q Consensus 228 ----~~p-~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 295 (604)
-.| ... .++..+..--..|-++..+.+++.+++..+.....+.| ..-.+-...-++++.+++++-..
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCcc
Confidence 111 111 22223333445677888888888888877653333333 22234455667888888887653
Q ss_pred ---CCc-ccHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCcHHHHHHHHHHchhhcCCC
Q 044872 296 ---KDQ-VVWNAVVSGLSM---NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG--CTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 296 ---~~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
|++ ..|+..+.-+.+ .-..+.|..+|++.++ |.+|...-+.-|+-+ -..-|....|..+++.+.. +++
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~ 617 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVK 617 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCC
Confidence 343 468877665543 3468899999999999 778876433333322 2345888899999998764 455
Q ss_pred Cc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHccC-CC-CchhH
Q 044872 367 PM--IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIV---WGALLAGCRLHKKTDLAEHVLNQLIALE-PW-NSGNY 438 (604)
Q Consensus 367 p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~ 438 (604)
+. ...|+..|.--+..=-+..-.++|++. ..-||..+ .-.+...-.+.|..+.|..++...-++- |. ++..|
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW 697 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW 697 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH
Confidence 43 345666553221111111122333332 12233332 2223333456777777877777766643 33 33455
Q ss_pred HHHHHHHHhcCChHHHH
Q 044872 439 VLLSNIYSASHKWNDAA 455 (604)
Q Consensus 439 ~~l~~~~~~~g~~~~A~ 455 (604)
...-+.-.+.|+-+-..
T Consensus 698 ~twk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 698 DTWKEFEVRHGNEDTYK 714 (835)
T ss_pred HHHHHHHHhcCCHHHHH
Confidence 55555556667644333
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=4.7e-09 Score=111.18 Aligned_cols=260 Identities=13% Similarity=0.030 Sum_probs=185.4
Q ss_pred CcchHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH---------ccCchHHHHHHHHHHHH
Q 044872 196 DIVSWSSMIQGYAS-----NGFPKEALDMFYNMQRENLKPEY-YTMVGVLSACA---------SLGALELGVWASSFMER 260 (604)
Q Consensus 196 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 260 (604)
+...|...+.+-.. .+..++|+++|++..+. .|+. ..+..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44556566655322 13467899999998874 5653 34444443332 23457899999999988
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 044872 261 NEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TF 336 (604)
Q Consensus 261 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 336 (604)
.... +...+..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+ ..|+.. .+
T Consensus 333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~ 409 (553)
T PRK12370 333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAG 409 (553)
T ss_pred cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhH
Confidence 7633 677788888899999999999999999765 3 355788888899999999999999999998 556542 33
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHh
Q 044872 337 VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRL 413 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~ 413 (604)
..++..+...|++++|...++.+.+. ..|+ ...+..+...|...|++++|.+.++++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34444566689999999999988753 2343 455677788899999999999999988 5556544 45555556677
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.| +.|...++.+++..-..+.....+..+|+-.|+-+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788888887753322222333377778888888888777 7777654
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=3e-07 Score=85.30 Aligned_cols=410 Identities=15% Similarity=0.152 Sum_probs=217.0
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHH
Q 044872 40 CAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAI 116 (604)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 116 (604)
+....++..|..+++.-...+-+-...+-.-+...|.+.|++++|...+..+.+ ++...|-.|.-.+.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 344555666666655544333221112222233445556666666666654432 34445555555555556666665
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--
Q 044872 117 NMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE-- 194 (604)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 194 (604)
.+-.... .++---..++...-+.++-++-..+++.+... ..-.-+|..+....-.+++|.+++.++..
T Consensus 112 ~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5443321 12222233334444556655555555554432 12233444444444556666666666544
Q ss_pred CCcchHHH-HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c--C-----------------------
Q 044872 195 KDIVSWSS-MIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS--L--G----------------------- 246 (604)
Q Consensus 195 ~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~--~----------------------- 246 (604)
|+....|. |.-+|.+..-++-+.+++.--.+. -||. |+..-+.+|.. . |
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 33333333 233555555566555555554443 2332 22222222211 1 1
Q ss_pred ----------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCC---
Q 044872 247 ----------ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGY--- 313 (604)
Q Consensus 247 ----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~--- 313 (604)
+-+.|.+++--+.+. .| ..--.|+--|.+.+++++|..+.+.+....+.-|-.-.-.++..|+
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcC
Confidence 112222222222211 11 1222355568899999999999888765444333222222333333
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 314 ----VKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 314 ----~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
..-|.+.|+-.-.++..-|.+ --.++.+++.-...+++.+.++..+.. +=...|...+ .+.++++..|.+.+|
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEA 412 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHH
Confidence 344555555444444433332 123444555556678888888888874 3334444444 467888999999999
Q ss_pred HHHHHhCC-CC-CCHHHHHHHHHH-HHhcCChHHHHHHHHHHHccC-CCCc-hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 389 HELIKSMP-ME-PNAIVWGALLAG-CRLHKKTDLAEHVLNQLIALE-PWNS-GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 389 ~~~~~~~~-~~-p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.++|-.+. .+ .|..+|.+++.- |.+.+..+.|..++ +..+ |.+. .....+++-|.+++.+=-|.+.|+.+..
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 99998872 12 467788777765 56777887776554 4433 3332 3345678889999999999999998876
Q ss_pred CCCccCCceeE
Q 044872 464 KGIQKIRGCSW 474 (604)
Q Consensus 464 ~~~~~~~~~s~ 474 (604)
.+ |.|. .|
T Consensus 490 lD--P~pE-nW 497 (557)
T KOG3785|consen 490 LD--PTPE-NW 497 (557)
T ss_pred cC--CCcc-cc
Confidence 43 4443 37
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=6.2e-08 Score=98.09 Aligned_cols=234 Identities=13% Similarity=0.120 Sum_probs=142.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCCC----------CCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCC-
Q 044872 167 FVATSLVDLYAKCGNMEKARRVFDQMPE----------KDIV-SWSSMIQGYASNGFPKEALDMFYNMQRE---NLKPE- 231 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~- 231 (604)
.+...|..+|...|+++.|..+|+...+ +.+. ..+.+...|...+++++|..+|+++..- ..-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445566777777777777776665432 1222 2334667788888888888888887642 11112
Q ss_pred ---HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCc-ccHHHH
Q 044872 232 ---YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK---DKDQ-VVWNAV 304 (604)
Q Consensus 232 ---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~-~~~~~l 304 (604)
..|+..|..+|.+.|++++|...++.+.+. ++... .+.+ ...+.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 123333444444555555544444433221 00000 0111 123444
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCCc-hHH
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKC---GIQPNG----NTFVGLLCGCTHAGLVDEGRQFFNSMSRVF-----SLTPM-IEH 371 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~ 371 (604)
+..+...+++++|..+++...+. -..++. .++..+...|...|++++|.++|+.+.... +..+. -..
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 55566666677776666654331 122222 477788888888888888888888766432 11222 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM--------PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
++-|...|.+.++.++|.++|.+. +..|+.. +|..|...|...|+++.|+++.+.+.
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 677778888888888888888765 3456655 89999999999999999999999886
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=8.1e-09 Score=100.13 Aligned_cols=211 Identities=13% Similarity=0.093 Sum_probs=151.1
Q ss_pred chHHHHHHHHHHHHcC-CCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHH
Q 044872 247 ALELGVWASSFMERNE-FLSN--PVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGV 320 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 320 (604)
..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455566666666432 2222 45677778889999999999999998764 3567899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CC
Q 044872 321 FGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PM 397 (604)
Q Consensus 321 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~ 397 (604)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 6675 467778888889999999999999988853 454332222223345678899999999665 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------ccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 398 EPNAIVWGALLAGCRLHKKTDLAEHVLNQLI-------ALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
.|+...| .......|+...+ ..++.+. ++.|..+.+|..++.++.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 1222335555443 2444443 34566678999999999999999999999999987553
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=9e-08 Score=92.48 Aligned_cols=186 Identities=15% Similarity=0.064 Sum_probs=142.5
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH
Q 044872 275 DMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 350 (604)
..+.-+|+.-.|..-|+..... ++..|--+...|.+..+.++-.+.|++... +.| |+.+|..-.....-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHH
Confidence 3455688999999999887753 233377777889999999999999999988 555 4466766666667778999
Q ss_pred HHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 351 EGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+|..=|+..+ .+.|+ +..|-.+.-+.-|.+++++++..|++. .++.-+..|+-....+..+++++.|.+.|+.+
T Consensus 412 ~A~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 9999999887 55664 556767777777999999999999988 33334558888888999999999999999999
Q ss_pred HccCCC------CchhHHHHHHH--HHhcCChHHHHHHHHHHhhCCC
Q 044872 428 IALEPW------NSGNYVLLSNI--YSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 428 ~~~~p~------~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
++++|. ++..++.-+-+ -.+ +++..|.+++.+..+.+.
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDP 534 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCc
Confidence 999998 55555542222 233 888899999998877443
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.3e-07 Score=91.45 Aligned_cols=210 Identities=16% Similarity=0.084 Sum_probs=109.3
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CchhHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASSFMERNEFL-SNPVLGTTLID 275 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~ 275 (604)
++|-++.--|...|...+|.+.|.+... +.|. ...|.....+++..+.-++|...+..+-+.=.. .-+..|.. -
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg--m 388 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG--M 388 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH--H
Confidence 4444444444444445555444444322 1121 123344444444444444444444443331100 01222221 1
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHhcc
Q 044872 276 MYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC--GI---QP-NGNTFVGLLCGCTHA 346 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p-~~~t~~~ll~a~~~~ 346 (604)
-|.+.++++.|.++|.+... .|+...+-+....-..+.+.+|..+|+..... .+ .+ -..+++.|..+|.+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 34555566666666655432 24555555555444555666666666655421 01 11 223566667777777
Q ss_pred CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRL 413 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~ 413 (604)
+.+++|+..|+.... -.+.+..++.++.-.|...|+++.|.+.|.+. .++||..+-..++..+..
T Consensus 469 ~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred hhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 777777777776663 23445666777777777777777777777766 667777666666665443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.12 E-value=8.1e-09 Score=109.41 Aligned_cols=242 Identities=10% Similarity=-0.063 Sum_probs=155.5
Q ss_pred CChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHH---------hcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCC
Q 044872 44 HDFQLGVRSHSLIVKAGLDCD-EFVKTSLLNLYV---------HCGYLADALKVFDDIPD---KNVVSWTAIISGYINEG 110 (604)
Q Consensus 44 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~---------~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 110 (604)
++++.|.+++++.++.. |+ ...+..+...|. ..+++++|...+++..+ .+..+|..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 45778888888887753 33 344554444433 22447788888877654 35667777777888888
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
++++|+..|++..+.+. .+...+..+..++...|++++|...++.+++.... +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888888887532 23456777777888888888888888888887533 22333344555666788888888887
Q ss_pred cCCC---C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCchHHHHHHHHHHHHcC-CC
Q 044872 191 QMPE---K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACASLGALELGVWASSFMERNE-FL 264 (604)
Q Consensus 191 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~-~~ 264 (604)
+... | +...+..+...|...|+.++|...+.++... .|+..+.. .+...+...| +.+...++.+.+.. ..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 7642 3 3445677778888888889998888876553 44444333 3334455555 46666665554421 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 044872 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMKDK 296 (604)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 296 (604)
+..... +-..|.-.|+-+.+..+ +++.+.
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 111112 33345566777777666 766654
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=7.4e-09 Score=94.70 Aligned_cols=230 Identities=12% Similarity=0.056 Sum_probs=166.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044872 201 SSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
+-|..+|.+.|.+.+|.+.|+.-+.. .|-..||..+-.+|.+..+.+.|..++..-++.- +-|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888888888888888887765 3445567667777777777777777777666542 22444444556666677
Q ss_pred CCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044872 281 GRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 281 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
++.++|.++|+...+. ++.+...+..+|.-.++++-|+..|+++.+.|+. +...|..+.-+|...+.++-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7778888887776653 4555555666777777888888888888877753 45566666667777777766666665
Q ss_pred HchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 358 SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 358 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
..... +-+.++ -..+|-.|.......||+..|.+.|+-.+.-+|++..+
T Consensus 383 RAlst-------------------at~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-------------------ATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-------------------ccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 54421 111111 23467667667778899999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
++.|+-.-.+.|+.++|+.+++...+..
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9999999999999999999999887754
No 73
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1e-07 Score=88.24 Aligned_cols=373 Identities=15% Similarity=0.126 Sum_probs=228.3
Q ss_pred HHhcCChHHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChH
Q 044872 75 YVHCGYLADALKVFDDIPD------KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLS 148 (604)
Q Consensus 75 ~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 148 (604)
+....++..|+.+++--.. .++..| +...+.+.|++++|+..|.-+.+.. .|+......+.....-.|.+.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3345677777777654322 133334 4467788999999999999887753 456666666666666778888
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 044872 149 TAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENL 228 (604)
Q Consensus 149 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 228 (604)
+|+++-... +.++.-...|.+.-.+.++-++-..+-+.+.+.. .---+|.+..-..-++++|++++.+....
T Consensus 109 eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 109 EAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 888877653 2244445556677778888777666655554321 22233444444555789999999999875
Q ss_pred CCCHHHHHHHHH-HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHH--HHHHhcC---------
Q 044872 229 KPEYYTMVGVLS-ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK--CGRMAQAC--KVFREMK--------- 294 (604)
Q Consensus 229 ~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~--~~~~~~~--------- 294 (604)
.|+....+.-+. ++.+..-++.+.+++..-++.-. .++...|....-..+ .|+..+++ .+-+...
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 466666665444 45666777777777776665432 233333433333322 23322211 1111111
Q ss_pred -CCC---------------------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HhccC
Q 044872 295 -DKD---------------------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG-----CTHAG 347 (604)
Q Consensus 295 -~~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-----~~~~g 347 (604)
+.| +..--.++--|.++++..+|..+.+++.- ..|-......+..+ .....
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 011 11222344557788999999998887543 34444333333322 22223
Q ss_pred cHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 044872 348 LVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMP--MEPNAIVWGALLAGCRLHKKTDLAEHVL 424 (604)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 424 (604)
.+.-|.+.|+..-+. +...| +.--.++...+.-..++++.+-.++.+. +..|...--.+..+....|++.+|+++|
T Consensus 338 HlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 456677777766543 44433 3334456666666778888888888772 2223333334788899999999999999
Q ss_pred HHHHccCCCCchhH-HHHHHHHHhcCChHHHHHHHHHHh
Q 044872 425 NQLIALEPWNSGNY-VLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 425 ~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
-++...+-.|...| ..|+.+|.++|+.+-|+.++-++.
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 88876664454555 457899999999999988876553
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.11 E-value=2e-06 Score=86.34 Aligned_cols=426 Identities=13% Similarity=0.065 Sum_probs=246.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhC
Q 044872 33 FPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINE 109 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 109 (604)
|..+++.+ ..+++..++.+.+.+++. ++....+.....-.+...|+.++|......-.. ++.+.|..+.-.+-..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 33444433 456777777777777763 222233333222233445788888777765443 3566788887777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDS-FSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRV 188 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (604)
.++++|+..|+..+.. .||. ..+.-+.-.-++.++++.....-....+.. +.....|..++-++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888764 3443 344444444456677776666655555543 33455677777777777888888777
Q ss_pred HccCCC-----CCcchHHH------HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCchHHHHHHHH
Q 044872 189 FDQMPE-----KDIVSWSS------MIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACASLGALELGVWASS 256 (604)
Q Consensus 189 ~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~ 256 (604)
.+...+ ++...+.- .......+|..++|++.+..-... ..|...+. .-...+.+.+++++|..++.
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 665432 22222221 123455677777777766554332 12333332 33445567788888888888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCCc--ccHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCC
Q 044872 257 FMERNEFLSNPVLGTTLIDMYAKCGRMAQAC-KVFREMKDKDQ--VVWNAVVSGLSMNGYV-KVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 257 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~ 332 (604)
.++..... +...|-.+..++.+-.+.-++. .+|....+.-. ..-..+--...+.... +..-.++..+.+.|++|-
T Consensus 244 ~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 244 RLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 77776422 3333444444554333333333 56665543100 0000000011111222 334456677778887664
Q ss_pred HHHHHHHHHHHhccCcHHH-HHHHHHHchhhc-------C--CCCchHHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 044872 333 GNTFVGLLCGCTHAGLVDE-GRQFFNSMSRVF-------S--LTPMIEHY--GCMVDLLGRSGQLDEAHELIKSM-PMEP 399 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~-a~~~~~~~~~~~-------~--~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p 399 (604)
-.++.++..-=.+..-+++ +..+...+.... + -+|+...| -.++..|-+.|+++.|..+++.. +-.|
T Consensus 323 f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP 402 (700)
T KOG1156|consen 323 FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP 402 (700)
T ss_pred hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc
Confidence 4444444321111111111 122222222110 0 14554444 45678888999999999999987 6667
Q ss_pred CHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 400 NAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 400 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
+.+ .|..=.+.+...|+++.|...++++.+++-.|...-.--+.-..++.+.++|.++.......|.
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 766 5656667788899999999999999999866654433566667789999999999998887664
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=4.2e-08 Score=91.94 Aligned_cols=199 Identities=15% Similarity=0.062 Sum_probs=103.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|+++.|...+....+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3456677777778888888888887776542 122344444555555555555555555555543321 23333344444
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
+...|++++|.+.+++.......| ....+..+..++...|++++|...
T Consensus 109 -------------------------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 -------------------------------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------------------HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555555555544421111 123334444455555666666666
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
++...+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555532 1112344555555666666666666666554 2122 3344445555556666666666666555443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.1e-08 Score=89.41 Aligned_cols=161 Identities=15% Similarity=0.064 Sum_probs=136.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
...+.-+|.+.|+...|..-+++.++ ..|+. .++..+...|.+.|..+.|.+.|+... .+.|+ -.+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 34466688889999999999999888 56765 578888888999999999999999887 44554 6678888888
Q ss_pred HhhcCCHHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH
Q 044872 379 LGRSGQLDEAHELIKSM---PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~---~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 454 (604)
++..|++++|...|++. |.-|. ..+|..+.-+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999988 33333 348888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 044872 455 AKIRSMMGDKGI 466 (604)
Q Consensus 455 ~~~~~~m~~~~~ 466 (604)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887654
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=1.2e-06 Score=89.49 Aligned_cols=421 Identities=14% Similarity=0.088 Sum_probs=262.8
Q ss_pred cCCchHHHHH----HHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 8 NDCFQHAIEF----YNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 8 ~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
..+.+++.-. +.++....++.|...|-.+.-+....|+++.+-+.|++....-+. ....|+.+-..|+.+|.-..
T Consensus 297 Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~ 375 (799)
T KOG4162|consen 297 RENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSK 375 (799)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchH
Confidence 3344455433 333333446668888988888888999999999999998775433 56678888899999999999
Q ss_pred HHHHhccCCC----CC-cccHHHHHHHHHh-CCChhHHHHHHHHHHH--CCCC--CChhhHHHHHHHHhc----CCC---
Q 044872 84 ALKVFDDIPD----KN-VVSWTAIISGYIN-EGNLEEAINMFRRLLH--RGLK--PDSFSIVRVLTACTQ----LGD--- 146 (604)
Q Consensus 84 A~~~f~~~~~----~~-~~~~~~li~~~~~-~g~~~~A~~~~~~m~~--~g~~--p~~~t~~~ll~~~~~----~g~--- 146 (604)
|..+.+.-.. |+ ...+-..-..|.+ .+..+++++.-.+... .+.. .....|..+.-+|.. ...
T Consensus 376 Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 376 AVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH
Confidence 9999976543 22 2222222233333 4777888877777665 1111 122333333333321 111
Q ss_pred ----hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC----CCCcchHHHHHHHHHhCCCchHHHH
Q 044872 147 ----LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP----EKDIVSWSSMIQGYASNGFPKEALD 218 (604)
Q Consensus 147 ----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~ 218 (604)
..++.+.++..++.+. .|+.+.--+.--|+..++++.|.+...+.. ..+...|..+.-.+...+++.+|+.
T Consensus 456 R~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 2345667777777653 233333345556788889999988776653 3578899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH---------------------HcCCC-------CchhHH
Q 044872 219 MFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFME---------------------RNEFL-------SNPVLG 270 (604)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~---------------------~~~~~-------~~~~~~ 270 (604)
+.+.....- .-|..-...-++.-...++.+++......++ +.|+. -...++
T Consensus 535 vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 535 VVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 988776531 1111111111111111233333222211111 11110 012222
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhcCCCC------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 044872 271 TTLIDMYAK---CGRMAQACKVFREMKDKD------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLL 340 (604)
Q Consensus 271 ~~li~~~~~---~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 340 (604)
..+...... .-..+.....+...+.++ ...|......+...+..++|...+.+... +.|- ...|....
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G 691 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRG 691 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhh
Confidence 222221111 111111112222222232 12456666778889999999988888776 4453 34555555
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHE--LIKSM-PMEP-NAIVWGALLAGCRLHK 415 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~~ 415 (604)
..+...|..++|.+.|.... -+.|+ +...+++..++.+.|+..-|.. ++..+ .+.| +...|-.+...+.+.|
T Consensus 692 ~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 692 LLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 67778899999999999877 56776 6778899999999998777777 77777 6666 5669999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCch
Q 044872 416 KTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~ 436 (604)
+.+.|.+.|..+.++++.+|.
T Consensus 769 d~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 769 DSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred chHHHHHHHHHHHhhccCCCc
Confidence 999999999999999887663
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=3.5e-06 Score=86.64 Aligned_cols=254 Identities=15% Similarity=0.131 Sum_probs=136.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 201 SSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 201 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
..+...|-..|++++|++++++..+. .|+ ...|..-...+-+.|++.+|....+.....+.. |..+-+-.+..+.+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 44556666777777777777776664 344 345556666677777777777777777666543 66666667777777
Q ss_pred cCCHHHHHHHHHhcCCCCcc----------cH--HHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CCC----------
Q 044872 280 CGRMAQACKVFREMKDKDQV----------VW--NAVVSGLSMNGYVKVAFGVFGQLEKC--GI---QPN---------- 332 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~p~---------- 332 (604)
+|++++|.+++......+.. .| .....+|.+.|++..|++-|....+. .+ +-|
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t 354 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMT 354 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhcc
Confidence 77777777777766654321 22 22345677777777777666554331 01 112
Q ss_pred HHHHHHHHHHHhccC-------cHHHHHHHHHHchhhcCCCC-----------chHHHHHHHHHH---hhcCCHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAG-------LVDEGRQFFNSMSRVFSLTP-----------MIEHYGCMVDLL---GRSGQLDEAHEL 391 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g-------~~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~~ 391 (604)
..+|..++.-.-+.. -...|.+++-.+........ +..--..+-.-- .+...-+++...
T Consensus 355 ~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~ 434 (517)
T PF12569_consen 355 LRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKA 434 (517)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 223333333211111 11233334333332100000 000001111000 011111111111
Q ss_pred HH-----------hC----CCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHH
Q 044872 392 IK-----------SM----PMEPNAIVWG-ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 392 ~~-----------~~----~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 455 (604)
-. +. +.++|..... .|+ ....-+++|.+.++-+.+..|++..+|..-..+|.+.|++--|.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 435 AKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 10 00 1111221111 111 23445888999999999999999999999999999999999888
Q ss_pred HHHHH
Q 044872 456 KIRSM 460 (604)
Q Consensus 456 ~~~~~ 460 (604)
+.+.+
T Consensus 512 qaL~k 516 (517)
T PF12569_consen 512 QALKK 516 (517)
T ss_pred HHHHh
Confidence 77653
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.6e-08 Score=91.18 Aligned_cols=226 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 101 AIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180 (604)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (604)
-|..+|.+.|.+.+|...|+.-++. .|-..||..+-++|.+..++..|..++.+.++. ++-|+.........+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3445555555555555555555443 233344444555555555555555555554443 2334444444444555555
Q ss_pred CHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 044872 181 NMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSF 257 (604)
Q Consensus 181 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 257 (604)
+.++|.++|+...+ .++.+...+..+|.-.++++-|+.+|+++++.|+. +...|..+.-+|.-.++++.+..-+.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 55555555554433 23333333444444455555555555555554432 233344444444444444444444433
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044872 258 MERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFV 337 (604)
Q Consensus 258 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 337 (604)
....-..|+ .-...|..+.......|++..|.+.|+-....+ .-+...++
T Consensus 384 Alstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealn 433 (478)
T KOG1129|consen 384 ALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALN 433 (478)
T ss_pred HHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHH
Confidence 333221111 012345555555555566666666665555432 11234555
Q ss_pred HHHHHHhccCcHHHHHHHHHHch
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.|.-.-.+.|++++|..++....
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhh
Confidence 55555556666666666666555
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=2.1e-07 Score=90.26 Aligned_cols=226 Identities=13% Similarity=-0.016 Sum_probs=140.7
Q ss_pred CchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044872 212 FPKEALDMFYNMQREN-LKPE--YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACK 288 (604)
Q Consensus 212 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (604)
..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+...++... .++..++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555321 1222 22344444555666677777666666666542 256777888888888888888888
Q ss_pred HHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC
Q 044872 289 VFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 289 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
.|++..+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 8888754 3 356777788888889999999999999887 456543222222234456788999999976553 22
Q ss_pred CCchHHHHHHHHHHhhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-ch
Q 044872 366 TPMIEHYGCMVDLLGRSGQLDE--AHELIKSM-PM----EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-SG 436 (604)
Q Consensus 366 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-~~ 436 (604)
.|+...+ .++.. ..|++.+ +.+.+.+. .. .| ....|..+...+...|++++|...|+++++.+|.+ ..
T Consensus 196 ~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3332222 23333 3444433 33333221 11 12 23478889999999999999999999999999744 44
Q ss_pred hHHHHHHHH
Q 044872 437 NYVLLSNIY 445 (604)
Q Consensus 437 ~~~~l~~~~ 445 (604)
.-..++...
T Consensus 273 ~~~~~~e~~ 281 (296)
T PRK11189 273 HRYALLELA 281 (296)
T ss_pred HHHHHHHHH
Confidence 433444443
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=2.2e-05 Score=79.09 Aligned_cols=447 Identities=13% Similarity=0.041 Sum_probs=272.6
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
..+++...+.+.+..+..- +-...|....--.+...|+.++|.......++..+ .+.+.|..+.-.+....++++|.+
T Consensus 19 E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHH
Confidence 4567777888888877742 22334444333334567888999888777766442 355678877777777789999999
Q ss_pred HhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-C
Q 044872 87 VFDDIP---DKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG-K 162 (604)
Q Consensus 87 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~ 162 (604)
.|.... ..|...|.-+.-.-++.|+++.....-.++.+.. +-....|.....+.--.|+...|..+.+...+.. -
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 998754 3477778877777778888888888888877752 2234457777777778899999999999888765 2
Q ss_pred CCChhHHHHHH------HHHHhcCCHHHHHHHHccCCCC--Cc-chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 044872 163 GRNVFVATSLV------DLYAKCGNMEKARRVFDQMPEK--DI-VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYY 233 (604)
Q Consensus 163 ~~~~~~~~~li------~~y~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 233 (604)
.|+...+.-.. ....+.|..++|.+.+..-... |- ..-.+-...+.+.+++++|..++..++.. .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 45554443322 2345678888888887665432 22 22334566788899999999999999875 57877
Q ss_pred HHHHHHHHHH-ccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-cccHHHHHHHHHh
Q 044872 234 TMVGVLSACA-SLG-ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-QVVWNAVVSGLSM 310 (604)
Q Consensus 234 t~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 310 (604)
-|.-.+..+. ... ..+....++....+.-.......... ++...-..-.+....++..+.++. +..+..+.+.|-.
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp-lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP-LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD 332 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc-HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc
Confidence 7776665554 233 33333355555543321111111000 011111111122222333333322 2344444444433
Q ss_pred CCCHHHHHHHHHHHHH----CC----------CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHH
Q 044872 311 NGYVKVAFGVFGQLEK----CG----------IQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYG 373 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~----~g----------~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 373 (604)
....+-..++.-.+.. .| -+|... |+..+...+-+.|+++.|..+.+... +-.|+ ++.|.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~ 409 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYL 409 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHH
Confidence 2222211122222211 11 145543 45556677888999999999999888 44666 55676
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-------hhHHH--HH
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS-------GNYVL--LS 442 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~--l~ 442 (604)
.-...+...|.+++|..++++. .+ .||...-.--..-..+.++.++|.++.......+-+-. -.|.. =+
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 6678888999999999999988 22 24443322333445678889999998888765443111 12222 25
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 044872 443 NIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~ 462 (604)
.+|.++|++.+|.+-|..+.
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 67888888888877666554
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-05 Score=76.80 Aligned_cols=262 Identities=12% Similarity=0.024 Sum_probs=175.3
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
.|+.....+...+...|+.++|...|++.+. +.|+..+-. .-.-.+...|+.+....+...+....-. +...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhh
Confidence 4566778888888888998888888888765 334332211 1111234566777666666665443211 11111111
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVV---SGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLV 349 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~ 349 (604)
........+++.|+.+-++..+.|.....++| ..+.+.|+.++|.-.|+..+. +.| +...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 22234456778888887777665444444433 567788899999999988877 666 447899999999999999
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHH-HHHhh-cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMV-DLLGR-SGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLN 425 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 425 (604)
.+|.-.-+...+. ++.+..+.+.+. +.+.- ...-++|.+++++. .++|+-. ..+.+...|...|..+.+..+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 8888777665542 233444444332 22222 22346788888876 7778754 66777778889999999999999
Q ss_pred HHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 426 QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 426 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+.+...|++ ..+..|++++...+.+.+|...|......
T Consensus 463 ~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999888854 68888999999999999999998877653
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.88 E-value=5.3e-06 Score=84.11 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=155.2
Q ss_pred HHHhcCCHHHHHHHHccCCCCCcc--hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 044872 175 LYAKCGNMEKARRVFDQMPEKDIV--SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV 252 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (604)
+.....+|.+|..+++.+..+++. -|..+..-|+..|+++.|.++|.+.- .+.-.|..|.+.|.++.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 344455666666666666554433 24555566666677777766665421 1334455666667766665
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 253 WASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
++-... .|.+.....|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-++|..+..+++..+ ..|+
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k-----~h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK-----HHGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----hChh
Confidence 554333 23333444555555555566777777777666666653 35667777777776666655 2344
Q ss_pred H--HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCC---C-CHHHHHH
Q 044872 333 G--NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPME---P-NAIVWGA 406 (604)
Q Consensus 333 ~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p-~~~~~~~ 406 (604)
. .|...+..-+...|++..|...|-.... |.+-+++|-..+.|++|.++-+.-+-. . -...|..
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3 4666777778888999999888776542 667788899999999998887765211 1 1123322
Q ss_pred HH------HHHHhcCChHHHH-------------HHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 407 LL------AGCRLHKKTDLAE-------------HVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 407 ll------~~~~~~~~~~~a~-------------~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
-+ ..+.++|-++.|. .+.+-..+ ..-+....-++.-+...|++++|.+-+-+..+.+
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 11 2233445444443 33332222 2234567777888889999999988887777644
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=1.9e-07 Score=89.19 Aligned_cols=153 Identities=13% Similarity=0.091 Sum_probs=89.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGR 353 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 353 (604)
..+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~a----------- 172 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEA----------- 172 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHH-----------
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHH-----------
Confidence 34555667777777766554 3344444556666677777777777777665 33332 22222222
Q ss_pred HHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 354 QFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..++...|++++|+++++++++.+
T Consensus 173 ---------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 173 ---------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp ---------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred ---------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 222222223455666666665 223566667777777777777777777777777777
Q ss_pred CCCchhHHHHHHHHHhcCCh-HHHHHHHHHHhh
Q 044872 432 PWNSGNYVLLSNIYSASHKW-NDAAKIRSMMGD 463 (604)
Q Consensus 432 p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 463 (604)
|+++.+...++-+....|+. +.+.+++.++..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777777777 556667776654
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.9e-06 Score=83.50 Aligned_cols=216 Identities=10% Similarity=0.013 Sum_probs=150.0
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc----------cHHHHH
Q 044872 236 VGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV----------VWNAVV 305 (604)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li 305 (604)
..+.++.-...+++.+.+-+....... .+..-++....+|...|....+...-....+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345556666667778888777777665 46666777777888888877766655554432111 122233
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH-HHHHHHHHHhhcCC
Q 044872 306 SGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE-HYGCMVDLLGRSGQ 384 (604)
Q Consensus 306 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~ 384 (604)
.+|...++++.|+..|.+....-..||..+ +....+++....+... -+.|... -...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 466667788888888888766544444322 2233344444443332 3344431 11222566778999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 385 LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+..|...|.++ ...| |...|.....+|.+.|++..|..-.+..++++|+....|..=+.++.-..+|++|.+.|.+..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 4445 566888888899999999999999999999999999999999999999999999999999887
Q ss_pred hCC
Q 044872 463 DKG 465 (604)
Q Consensus 463 ~~~ 465 (604)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 754
No 86
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=1.1e-07 Score=94.12 Aligned_cols=218 Identities=14% Similarity=0.066 Sum_probs=170.1
Q ss_pred HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHH
Q 044872 243 ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
.+.|++..|.-.|+..++.... +...|.-|.......++-..|...+++..+- |....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4667888888888888887643 6777888888888888888888888887764 44556666677888899999999
Q ss_pred HHHHHHHCCCC--------CCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 044872 320 VFGQLEKCGIQ--------PNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 320 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
.++.-+....+ ++..+-.. ........+....++|-.+....+..+|.++..+|.-+|--.|.+++|.+-
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99887653210 00000000 122223344555666766665556667888899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 392 IKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 392 ~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
|+.+ ..+|+ ..+||.|...++...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 77775 569999999999999999999999999999999999999999999999999999999988765
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=2.5e-06 Score=75.06 Aligned_cols=164 Identities=16% Similarity=0.104 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGC 343 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 343 (604)
.++..+...|.+.|+.+.|.+.|++... .+-...|....-+|.+|++++|...|++....-.-|. ..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 3444444455555555555555554432 2334444455555555566666666655554321121 23555555555
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHH
Q 044872 344 THAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 344 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a 420 (604)
.+.|+.+.|..+|+...+ ..|+ ......+.......|++..|..+++.. ...++..+....|..-...||.+.+
T Consensus 150 l~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred hhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 556666666666665553 2232 334445555566666666666666655 2234555555555555666666666
Q ss_pred HHHHHHHHccCCCC
Q 044872 421 EHVLNQLIALEPWN 434 (604)
Q Consensus 421 ~~~~~~~~~~~p~~ 434 (604)
-+.-.++....|..
T Consensus 227 ~~Y~~qL~r~fP~s 240 (250)
T COG3063 227 QRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHhCCCc
Confidence 66555555555654
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.79 E-value=2.2e-06 Score=88.12 Aligned_cols=259 Identities=10% Similarity=0.082 Sum_probs=153.5
Q ss_pred HHHHhcCCHHHHHHHHccCCC--CCcch-HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 044872 174 DLYAKCGNMEKARRVFDQMPE--KDIVS-WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALEL 250 (604)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (604)
..+...|++++|++.++.-.. .|..+ .......+.+.|+.++|..+|+.+... .|+...|...+..+.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~--- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL--- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc---
Confidence 445666777777777765443 23333 344556666777777777777777665 3555555444433321100
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc--ccHHHHHHHHHhCCCH-HHHHHHHHHHHHC
Q 044872 251 GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ--VVWNAVVSGLSMNGYV-KVAFGVFGQLEKC 327 (604)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 327 (604)
+ ....+.+....+|+++....+ .+...+.-.+.....+ ..+...+..+...
T Consensus 87 -----------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 87 -----------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred -----------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 000122333333333322111 1111111111111112 2345566667777
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhc-------------CCCCchHHH--HHHHHHHhhcCCHHHHHHHH
Q 044872 328 GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF-------------SLTPMIEHY--GCMVDLLGRSGQLDEAHELI 392 (604)
Q Consensus 328 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-------------~~~p~~~~~--~~li~~~~~~g~~~~A~~~~ 392 (604)
|+++- |..|-..|......+-..+++....... .-+|+...| ..+...|...|++++|++++
T Consensus 141 gvPsl---F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~I 217 (517)
T PF12569_consen 141 GVPSL---FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYI 217 (517)
T ss_pred CCchH---HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 76543 3444444444444444444444433211 113444333 45567888999999999999
Q ss_pred HhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 393 KSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 393 ~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
++. ...|+.+ .|..-...+...|++++|.+.++.+.++++.|...-.-.+..+.++|+.++|.++.......+.
T Consensus 218 d~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 218 DKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 977 6667644 7777888899999999999999999999999887777788888999999999999998887665
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=0.00023 Score=75.27 Aligned_cols=145 Identities=14% Similarity=0.237 Sum_probs=117.4
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV 376 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 376 (604)
.+..|+.+..+-.+.|...+|++-|-+. -|...|..++..+++.|.+++-..++...+++ .-.|.++ +.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3467999999999999999999877542 36678999999999999999999999888765 5566654 5688
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 377 DLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
-+|++.+++.+-.+++. -||..-......-|...|.++.|.-+|.. .+.|.-|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887764 36777778888889999999999888863 4677778888888888888776
Q ss_pred HHHHHh
Q 044872 457 IRSMMG 462 (604)
Q Consensus 457 ~~~~m~ 462 (604)
.-++..
T Consensus 1242 ~aRKAn 1247 (1666)
T KOG0985|consen 1242 AARKAN 1247 (1666)
T ss_pred Hhhhcc
Confidence 655443
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=4.1e-05 Score=87.37 Aligned_cols=259 Identities=14% Similarity=0.063 Sum_probs=146.1
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHc----CC-CCchhHHHHHHHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEY----YTMVGVLSACASLGALELGVWASSFMERN----EF-LSNPVLGTTLIDM 276 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~ 276 (604)
.+...|++++|...+++....-...+. .....+...+...|+++.|...+...... +. .........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566777777766665542111111 12233334455567777776666665432 10 0112233445556
Q ss_pred HHhcCCHHHHHHHHHhcCC-------CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKD-------KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC--GIQPN--GNTFVGLLC 341 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~ 341 (604)
+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...|. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6677777777776665432 11 112333444556668888888877776542 11122 223444455
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHH-----HHHHHHHhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY-----GCMVDLLGRSGQLDEAHELIKSMPM-E-PNA----IVWGALLAG 410 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~ 410 (604)
.....|++++|.+.++..............+ ......+...|+.+.|.+++..... . ... ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 6677888888888877764321111111111 1112344557888888888876621 1 111 123455666
Q ss_pred HHhcCChHHHHHHHHHHHccC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 411 CRLHKKTDLAEHVLNQLIALE------PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...|+.++|...++++++.. +....++..++.++.+.|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778888999988888887532 112345667888888999999999998888764
No 91
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.4e-05 Score=81.23 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=80.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
+..|..+..+-.+.|...+|++-|-+. .|...|.-++..+.+.|.+++-..++..+.+..-+|. +-+.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHH
Confidence 456888888888888888888877432 3567788889999999999888888877777655554 34578888
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
|++.+++.+-+.++. -||+........-|...|.++.|.-+|.
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 999888887776643 3444444444555555555555544443
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=1.3e-05 Score=80.68 Aligned_cols=256 Identities=12% Similarity=-0.008 Sum_probs=142.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHH
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEY-YTMVGVLSACAS----LGALELGVWASSFMERNEFLSN-PVLGTTLIDMYA 278 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~ 278 (604)
..+...|++++|.+.+++..+. .|+. ..+.. ...+.. .+..+.+.+.... ..+..|+ ......+...+.
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 3455667777777777776654 2332 22221 111111 2333333333332 1111222 333445556677
Q ss_pred hcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCcHHHH
Q 044872 279 KCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-QPNG--NTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a 352 (604)
..|++++|...+++..+ .+...+..+...|...|++++|..++++...... .|+. ..+..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 78888888888877654 2445666777778888888888888887766321 1222 2344566677788888888
Q ss_pred HHHHHHchhhcCCCCchHHH-H--HHHHHHhhcCCHHHHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHH
Q 044872 353 RQFFNSMSRVFSLTPMIEHY-G--CMVDLLGRSGQLDEAHEL---IKSM-PMEPN---AIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
..+++.........+..... + .++..+...|....+.++ .... +..|. .........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 88888765321111211111 1 222333334432222222 1111 11011 1222345566778889999999
Q ss_pred HHHHHHccC-C--------CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 423 VLNQLIALE-P--------WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 423 ~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+++.+.... . .........+.++...|++++|.+.+.......
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 998876422 1 123455667788899999999999999887643
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00011 Score=73.44 Aligned_cols=407 Identities=14% Similarity=0.056 Sum_probs=238.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHH----HHHHHhCCC
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAI----ISGYINEGN 111 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l----i~~~~~~g~ 111 (604)
=+......+++++|.+.-..++..+ +.|......=+-...+.+++++|+++.+.-... .+++.. ..+.-+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3445567788999999999998876 444555555556677889999999777654321 122222 334457899
Q ss_pred hhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 112 LEEAINMFRRLLHRGLKPD-SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR-NVFVATSLVDLYAKCGNMEKARRVF 189 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 189 (604)
.++|+..+. |..++ ..+...-...|-+.|+++++..+|+.+.+.+.+. +...-..++.+-. .-.+. +.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL 164 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence 999999988 33333 3366666677889999999999999998876432 2222222322211 11121 34
Q ss_pred ccCCCCCcchHHH---HHHHHHhCCCchHHHHHHHHHHHCC-------CCCCH------HH-HHHHHHHHHccCchHHHH
Q 044872 190 DQMPEKDIVSWSS---MIQGYASNGFPKEALDMFYNMQREN-------LKPEY------YT-MVGVLSACASLGALELGV 252 (604)
Q Consensus 190 ~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------~~p~~------~t-~~~ll~~~~~~~~~~~a~ 252 (604)
+..+.....+|.. ....+...|++.+|+++++...+.+ -.-+. .+ -.-+.-.+-..|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 4444433334443 3456778999999999998883211 11111 11 112334456789999999
Q ss_pred HHHHHHHHcCCCCch---hHHHHHHHHHHhcCCHH--HHHHHHHhcCCCCccc--------------H-HHHHHHHHhCC
Q 044872 253 WASSFMERNEFLSNP---VLGTTLIDMYAKCGRMA--QACKVFREMKDKDQVV--------------W-NAVVSGLSMNG 312 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~--------------~-~~li~~~~~~g 312 (604)
.++..+++......+ ...|.|+.+ ....++- .++..++......... . +.++..|. +
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 999999887654322 223334332 2222211 2333333332221111 1 22222222 2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA--GLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 389 (604)
..+.+.++-.... +..|. ..+..++..+... .....+..++....+. .+-. ..+.-.++......|+++.|.
T Consensus 322 k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 2233333332221 23333 3444555444332 2466777777766643 2222 445566778889999999999
Q ss_pred HHHH--------hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----cCCC---CchhHHHHHHHHHhcCChHH
Q 044872 390 ELIK--------SM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA----LEPW---NSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 390 ~~~~--------~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~ 453 (604)
+++. .+ .+.-.+.+..++...+.+.++.+.|..++.+++. ..+. -...+..++..-.+.|+-++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 9998 44 2223344556677777788888888888888764 1121 12334445566678899999
Q ss_pred HHHHHHHHhh
Q 044872 454 AAKIRSMMGD 463 (604)
Q Consensus 454 A~~~~~~m~~ 463 (604)
|..+++++.+
T Consensus 477 a~s~leel~k 486 (652)
T KOG2376|consen 477 ASSLLEELVK 486 (652)
T ss_pred HHHHHHHHHH
Confidence 9999999976
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=6.6e-06 Score=74.84 Aligned_cols=412 Identities=14% Similarity=0.077 Sum_probs=225.1
Q ss_pred CCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC--CCcccHHH-
Q 044872 25 GFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD--KNVVSWTA- 101 (604)
Q Consensus 25 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~- 101 (604)
|+....--+.+++..+.+..++..+.+++..-.+.. +.+....+.|...|-...++..|...++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 333334446677777777777888888777655543 22444555666777777788888888877654 32222322
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH--hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTAC--TQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (604)
-...+-+.+.+.+|+++...|... |+...-..-+.+. -+.+|+..++.+.++... +.+..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeecc
Confidence 134555677888888887777542 2222222222222 245666666666655432 22444555555556677
Q ss_pred CCHHHHHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHccCchHHH
Q 044872 180 GNMEKARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYT-M---VGVLSACASLGALELG 251 (604)
Q Consensus 180 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~---~~ll~~~~~~~~~~~a 251 (604)
|++++|.+-|+...+ .....||.-+. ..+.|+++.|++...++.+.|++..... . .-.+.+ ...|+ -
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t 232 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---T 232 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---h
Confidence 777777777776654 33455654443 3455677777777777777766421110 0 000000 00000 0
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 252 VWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
..++... =+..+|.-...+.+.|+.+.|.+.+-.|+.+ |+++...+.-.- ..+++.+..+-+.-+..
T Consensus 233 ~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~ 304 (459)
T KOG4340|consen 233 LVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ 304 (459)
T ss_pred HHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh
Confidence 0011000 0122333344567889999999999999854 677766554322 24555555555555655
Q ss_pred CCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC-CchHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHH
Q 044872 327 CGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT-PMIEHYGCMVDLLGR-SGQLDEAHELIKSMPMEPNAIV 403 (604)
Q Consensus 327 ~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~ 403 (604)
. .| ...||..++-.|++..-++.|-.++.+-... ... .+...|+ |++++.. .-..++|.+-++.+...-....
T Consensus 305 ~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kL 380 (459)
T KOG4340|consen 305 Q--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKL 380 (459)
T ss_pred c--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 34 4579999999999999999888887643211 111 1233343 3344443 3456677665554410000000
Q ss_pred HHHHHHH-HHhcCChH----HHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 404 WGALLAG-CRLHKKTD----LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 404 ~~~ll~~-~~~~~~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
-..-+.. -.++.+-+ .+.+-+++.+++. ......-+++|++..++..+.++|....+
T Consensus 381 RklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 381 RKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 0001111 11222222 2333344444433 12556678899999999999999998765
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.74 E-value=1.4e-05 Score=84.00 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=111.5
Q ss_pred HHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchh
Q 044872 285 QACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 285 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
.|...+....+ .+...||+|.-. ...|.+.-|...|-+-... -+-+..+|..+.-.|....+++.|...|....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q- 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ- 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh-
Confidence 34444444332 455666665544 4445565555555554442 12244566666666777888999999998877
Q ss_pred hcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH----------H
Q 044872 362 VFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPNAIVWGALLAGCRLHKKTDLAEH----------V 423 (604)
Q Consensus 362 ~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~----------~ 423 (604)
.+.|+ ...|--........|+.-++..+|..- +-.|+...|..-..-...+|+.++-+. .
T Consensus 878 --SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 --SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred --hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 45664 445544444445678888888888652 334566666655555666666555444 3
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 424 LNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 424 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+++.+.-.|+...+|...+...-+.+.+.+|.+...+..
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445556679999999999999999999999888877664
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=2.3e-05 Score=80.69 Aligned_cols=359 Identities=15% Similarity=0.157 Sum_probs=212.4
Q ss_pred CCChhHHHHHH--HHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCC
Q 044872 62 DCDEFVKTSLL--NLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHR-G--------LKPD 130 (604)
Q Consensus 62 ~~~~~~~~~li--~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 130 (604)
.-|..+..+++ +.|..-|++|.|.+-.+-+. +-..|..|.+.|.+..+.+-|.-.+-.|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 34677777777 45778899999988776654 5578999999999999999888887777542 1 1232
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCC-cchHHHHHHHHHh
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKD-IVSWSSMIQGYAS 209 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 209 (604)
.+=..+.-....+|.+++|+.+|.+..+. ..|=..|-..|.+++|.++-+.=..-. -.||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22223333445788999999999988764 345567888899999998865432211 1355555666666
Q ss_pred CCCchHHHHHHHHHH----------HCCC---------CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 210 NGFPKEALDMFYNMQ----------RENL---------KPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~----------~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
.++.+.|++.|++-. .... .-|...|.--.......|+.+.|..++..+.+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 778888888876531 1100 11122222222223344444444444444332 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT------ 344 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~------ 344 (604)
-+++...+-.|+.++|-++-++- .|......+...|-..|++.+|...|.+.+. |...|+.|-
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHH
Confidence 23344444455555555554432 2445555677888888888888888877654 223333222
Q ss_pred ---------ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHH-HhC----------CC--CCCHH
Q 044872 345 ---------HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELI-KSM----------PM--EPNAI 402 (604)
Q Consensus 345 ---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~----------~~--~p~~~ 402 (604)
...+.-.|-.+|++.- .. ..--+.+|-++|.+.+|+++- +.- .+ ..|+.
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyEe~g----~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEELG----GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHcc----hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 2334444555555432 11 122355788888888888763 211 11 22444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH------c----------------cCCCC---------chhHHHHHHHHHhcCCh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLI------A----------------LEPWN---------SGNYVLLSNIYSASHKW 451 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~------~----------------~~p~~---------~~~~~~l~~~~~~~g~~ 451 (604)
..+.-..-+..+.++++|..++-... + +-|.. ......+++.|.++|.|
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 55444444566667777765543321 1 11211 13667789999999999
Q ss_pred HHHHHHHHHH
Q 044872 452 NDAAKIRSMM 461 (604)
Q Consensus 452 ~~A~~~~~~m 461 (604)
..|.+-|.+.
T Consensus 1162 h~AtKKfTQA 1171 (1416)
T KOG3617|consen 1162 HAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHhhh
Confidence 8887766543
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.73 E-value=1.2e-05 Score=81.73 Aligned_cols=232 Identities=15% Similarity=0.210 Sum_probs=146.0
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044872 207 YASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQA 286 (604)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (604)
+.+.|+++.|+.-|-+.. .....+.+......+.+|..+++.+...... ...|..+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHH
Confidence 344555555555543321 1223345555667788888888877665433 33456677888888888888
Q ss_pred HHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 044872 287 CKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 287 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
+++|-+.. .++-.|..|.+.|+++.|.++-.+... .......|..-..-.-..|.+.+|.+++-.+. .
T Consensus 785 e~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~ 852 (1636)
T KOG3616|consen 785 EELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----E 852 (1636)
T ss_pred HHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----C
Confidence 88887642 455667788888888888887665432 23334455555556677788888887775443 2
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
|+. -|.+|-+.|..++.+++.++.--..-..|...+..-+-..|++..|++-|-++ .-+..-.++|-
T Consensus 853 p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk 919 (1636)
T KOG3616|consen 853 PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYK 919 (1636)
T ss_pred chH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhh
Confidence 432 46778888888888888877621112335556666677778888887766543 23455677788
Q ss_pred hcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 447 ASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
.++-|++|.++-+.--..+..+....-|
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 8888888877755433333333333344
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.72 E-value=4.2e-05 Score=71.14 Aligned_cols=290 Identities=16% Similarity=0.107 Sum_probs=188.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHc
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMI---QGYASNGFPKEALDMFYNMQRENLKPEYYTMV-GVLSACAS 244 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~ 244 (604)
.--|.+.+...|++..|+.-|....+-|+..|-++. ..|...|+...|+.-|.+.++ ++||-..-. ---..+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334555666677777787777777776766666553 467777777777777777766 466643211 11223456
Q ss_pred cCchHHHHHHHHHHHHcCCCCc----hh----------HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHH
Q 044872 245 LGALELGVWASSFMERNEFLSN----PV----------LGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSG 307 (604)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~----~~----------~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 307 (604)
.|.++.|..-|+.+++.....+ .. .....+.-+...|+...|......+.+ -|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 7778888877777776543211 11 111123334556788888777776654 366666667778
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH----HHHHH---H----
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE----HYGCM---V---- 376 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l---i---- 376 (604)
|...|.+..|+.-++..-+.. .-+..++--+-..+...|+.+.++....+.. .+.||-. .|..| +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 888888888887777665521 2234555566666777788887777766665 4566632 22221 1
Q ss_pred --HHHhhcCCHHHHHHHHHhC-CCCCCH--H---HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 377 --DLLGRSGQLDEAHELIKSM-PMEPNA--I---VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 377 --~~~~~~g~~~~A~~~~~~~-~~~p~~--~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
....+.++|.++.+-.+.. ...|.. + .+..+-..++..+++.+|++...++++.+|+|..++.--+.+|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 1233456677776666554 444542 2 3334445567788999999999999999999999999899999888
Q ss_pred CChHHHHHHHHHHhhC
Q 044872 449 HKWNDAAKIRSMMGDK 464 (604)
Q Consensus 449 g~~~~A~~~~~~m~~~ 464 (604)
..||+|+.-|+...+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999988888764
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=8.7e-05 Score=74.63 Aligned_cols=151 Identities=14% Similarity=0.039 Sum_probs=69.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhcCCHHHHHHHHccCCCCCc---chHHHHHHHHHhCCCchH
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNVFVAT---SLVDLYAKCGNMEKARRVFDQMPEKDI---VSWSSMIQGYASNGFPKE 215 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~---~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~ 215 (604)
...|+++.+..+++...+.. +.|...+. .+.......+..+.+.+.++.....+. ..+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34555666666655555542 22222222 111111223444444444443222111 122334445666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-CCch--hHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 216 ALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEF-LSNP--VLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 216 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
|...+++..+.. +.+...+..+..++...|++++|...+....+... .++. ..+..+...+...|++++|..+|++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666542 12233344444455555555555555555544321 1111 2233455556666666666666665
Q ss_pred cC
Q 044872 293 MK 294 (604)
Q Consensus 293 ~~ 294 (604)
..
T Consensus 212 ~~ 213 (355)
T cd05804 212 HI 213 (355)
T ss_pred Hh
Confidence 43
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=3.5e-06 Score=91.40 Aligned_cols=198 Identities=12% Similarity=0.096 Sum_probs=166.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK--------DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFV 337 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 337 (604)
....|-..|......+++++|++++++.... -...|.+++..-...|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3556677777888899999999999987642 2458999998888889888899999999873 22346788
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHh
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP---NAIVWGALLAGCRL 413 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~ 413 (604)
.|+..|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-++|.+++.++ ..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999776 55678999999999999999999999877 3223 33355566666789
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
.|+.+++..+|+..+...|.....|..++++-.+.|+.+.++.+|++....++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999987653
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=3.3e-06 Score=79.39 Aligned_cols=179 Identities=11% Similarity=-0.030 Sum_probs=112.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C-c---ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK--D-Q---VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG----NT 335 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t 335 (604)
....+-.+...|.+.|++++|...|+++... + . ..|..+..+|.+.|++++|+..++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 3445556666777777777777777766542 1 1 24556667777777777777777777763 3322 13
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHchhhcCCCCch-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044872 336 FVGLLCGCTHA--------GLVDEGRQFFNSMSRVFSLTPMI-EHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGA 406 (604)
Q Consensus 336 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 406 (604)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33344444433 5667777777776643 3332 122111110 0000000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...+...|+++.|...++++++..|++ +.++..++.++.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556889999999999999999887654 468899999999999999999999988764
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=3e-05 Score=81.75 Aligned_cols=382 Identities=15% Similarity=0.072 Sum_probs=222.3
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHH
Q 044872 61 LDCD-EFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGL-KPDSFSIV 135 (604)
Q Consensus 61 ~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~ 135 (604)
+.++ ...|..|...|...-+...|.+.|+...+ .+..+|......|++..+++.|..+.-..-+... ..-..-|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 3444 34788888999888889999999987665 4677899999999999999999998332222110 00111233
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHH---HHHHHHhCCC
Q 044872 136 RVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSS---MIQGYASNGF 212 (604)
Q Consensus 136 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~ 212 (604)
...-.+...++...+..-++...+.. +.|...|..|..+|.++|++..|.++|.+...-++.+|-. ....-+..|.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGK 645 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh
Confidence 33345667788888888888887765 4588899999999999999999999998887655544332 2234567899
Q ss_pred chHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCch-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 213 PKEALDMFYNMQRE------NLKPEYYTMVGVLSACASLGAL-------ELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 213 ~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
+.+|+..+...... +..--..++..+...+...|-. +.+.+.+..........+...+-.+.
T Consensus 646 Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----- 720 (1238)
T KOG1127|consen 646 YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----- 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh-----
Confidence 99999988877542 1111122333333333333322 23333333333333233333333222
Q ss_pred cCCHHHHHHHHHhcCCCCcc--cHHHHHHH-HHhCCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----
Q 044872 280 CGRMAQACKVFREMKDKDQV--VWNAVVSG-LSMNGYV---K---VAFGVFGQLEKCGIQPNGNTFVGLLCGCTH----- 345 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~g~~---~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----- 345 (604)
+|...|-... ++.+ .+..++.. .-..+.. + -|.+.+-.-+. ...+..++..+...|.+
T Consensus 721 -----dac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 721 -----DACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred -----HHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHc
Confidence 2333333333 3311 11111111 1111111 1 11111111111 11122333333322222
Q ss_pred --cC-cHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 346 --AG-LVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 346 --~g-~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.+ +...|...+...++ ... +...|+.|. .+...|.+.-|..-|-+. -..| ...+|..+...|.+..+++.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~---L~ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVS---LCANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred CCcchhHHHHHHHHHHHHH---HhhccHHHHHHHH-HhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHH
Confidence 11 22355666665553 233 344555544 335556777666655444 2233 56688888888888889999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
|...|.....++|.|...+...+.+....|+.-++..+|..
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999888888887777888887777777776
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=1e-07 Score=58.00 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=26.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 044872 161 GKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP 193 (604)
Q Consensus 161 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 193 (604)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.00041 Score=68.81 Aligned_cols=417 Identities=13% Similarity=0.012 Sum_probs=241.4
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCD-EFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 82 (604)
+.+..|+++.|+.+|.+.....+. |.+.|+.=..++++.|++++|.+=-...++. .|+ .--|+.+...+.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 456789999999999999887654 8888999999999999999888766666554 455 346777777777789999
Q ss_pred HHHHHhccCCCC---CcccHHHHHHHHHhCCChhHH-HHHHHHH-HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 044872 83 DALKVFDDIPDK---NVVSWTAIISGYINEGNLEEA-INMFRRL-LHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYV 157 (604)
Q Consensus 83 ~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 157 (604)
+|+..|.+-.+. |...++.+..++ ..+.+ .+.|..- .-.++.-++.|-.. .....+. .++..+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~~-----~~~~~~~---~~l~~~ 155 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNYS-----LSDPAYV---KILEII 155 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhhh-----hccHHHH---HHHHHh
Confidence 999999876542 455666666665 11111 1111100 00011112222111 1111111 111111
Q ss_pred HHh----CCC-CChhHHHHHHHHHHhcCCHHHHHHH--H-------ccCCC--CCc-------------chHHHHHHHHH
Q 044872 158 NEA----GKG-RNVFVATSLVDLYAKCGNMEKARRV--F-------DQMPE--KDI-------------VSWSSMIQGYA 208 (604)
Q Consensus 158 ~~~----g~~-~~~~~~~~li~~y~~~g~~~~A~~~--~-------~~~~~--~~~-------------~~~~~li~~~~ 208 (604)
.+. +.. .|..+..++.......-....+... . ..+.+ |.+ .-.-.+.+...
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 110 000 0111111111100000000000000 0 00000 000 12344666667
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHccCchHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHHhcC
Q 044872 209 SNGFPKEALDMFYNMQRENLKPEYYTM-VGVLSACASLGALELGVWASSFMERNEFLSN------PVLGTTLIDMYAKCG 281 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g 281 (604)
+..++..|++-+....... ...|| +....++...|........-...++.|...- ......+..+|.+.+
T Consensus 236 kkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7778888888888777643 34444 4445566777766666655555544442210 011122344777888
Q ss_pred CHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 282 RMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 282 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
+++.|...|.+....-.. -....+....++++.......- +.|+.. -...-...+.+.|++..|...|.+++
T Consensus 313 ~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 999999999885432111 1112233345566665555544 445442 22233567788999999999999988
Q ss_pred hhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 361 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
+. -+.|...|....-.|.+.|.+..|++=.+.. ...|+.. .|..=..++.-..+++.|.+.|.+.++.+|++....
T Consensus 386 kr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 386 KR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred hc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 64 2445778998999999999999998876665 4555544 555556667777899999999999999999887776
Q ss_pred HHHHHHHHh
Q 044872 439 VLLSNIYSA 447 (604)
Q Consensus 439 ~~l~~~~~~ 447 (604)
..+.+++..
T Consensus 464 ~~~~rc~~a 472 (539)
T KOG0548|consen 464 DGYRRCVEA 472 (539)
T ss_pred HHHHHHHHH
Confidence 666666654
No 105
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=0.00028 Score=73.08 Aligned_cols=206 Identities=12% Similarity=0.135 Sum_probs=124.9
Q ss_pred cchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHh--------C-CCCChhHHHHHHH
Q 044872 3 RGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKA--------G-LDCDEFVKTSLLN 73 (604)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------g-~~~~~~~~~~li~ 73 (604)
+.|...|+.+.|++-.+.+. +...|..+.+.|.+..+++-|.-.+..|... . -.++ ..-....-
T Consensus 736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 56778899999988776553 3467999999998888888777766655321 1 1221 22222233
Q ss_pred HHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 044872 74 LYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWI 153 (604)
Q Consensus 74 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 153 (604)
.....|.+++|..++.+-.. |..|=..|-..|.+++|+++-+.=-+ +. =..||..-..-+-..+|.+.|.+.
T Consensus 809 LAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHH
Confidence 34466888999988877654 34444566677888888887654322 21 224555555666667777777776
Q ss_pred HHHHHH----------hC---------CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--------------------
Q 044872 154 HGYVNE----------AG---------KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE-------------------- 194 (604)
Q Consensus 154 ~~~~~~----------~g---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------------- 194 (604)
|++.-. .. -..|...|.--....-..|+++.|+.+|....+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence 653211 10 012333444444444556777777777765432
Q ss_pred ----CCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 044872 195 ----KDIVSWSSMIQGYASNGFPKEALDMFYNM 223 (604)
Q Consensus 195 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (604)
.|..+..-|...|-..|++.+|..+|.+.
T Consensus 961 A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 23344555666677777777777777654
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.55 E-value=2.9e-06 Score=81.17 Aligned_cols=151 Identities=18% Similarity=0.134 Sum_probs=77.2
Q ss_pred HHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchH
Q 044872 174 DLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS----LGALE 249 (604)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~ 249 (604)
.+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. . +..+...+..++.. ...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~-eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D-EDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S-CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C-CcHHHHHHHHHHHHHHhCchhHH
Confidence 3344455555555555443 23334444455555555555555555555442 1 22333333333322 12455
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCH-HHHHHHHHHHH
Q 044872 250 LGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYV-KVAFGVFGQLE 325 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~-~~A~~~~~~m~ 325 (604)
.|..+|+++.+. ..+++.+.|.+..++...|++++|++++.+.... |..+...++......|+. +.+.+.+.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 555555554332 3445566666666667777777777777666543 334444555555666666 55667777776
Q ss_pred HCCCCCC
Q 044872 326 KCGIQPN 332 (604)
Q Consensus 326 ~~g~~p~ 332 (604)
. ..|+
T Consensus 264 ~--~~p~ 268 (290)
T PF04733_consen 264 Q--SNPN 268 (290)
T ss_dssp H--HTTT
T ss_pred H--hCCC
Confidence 6 3454
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=5.1e-05 Score=86.60 Aligned_cols=359 Identities=12% Similarity=0.002 Sum_probs=219.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHhccCCC----CCcccHHHHHHHHHh
Q 044872 34 PFVLKACAREHDFQLGVRSHSLIVKAGLDCDE-FVKTSLLNLYVHCGYLADALKVFDDIPD----KNVVSWTAIISGYIN 108 (604)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~ 108 (604)
......+...|++..+... ....+..+.. .............|+++.+..+++.++. .+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~---a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHH---ALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHH---HHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3444556667777665543 3333211100 1111122334566888888888887752 233333444555667
Q ss_pred CCChhHHHHHHHHHHHCC--C----CCChh--hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHH
Q 044872 109 EGNLEEAINMFRRLLHRG--L----KPDSF--SIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNV----FVATSLVDLY 176 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g--~----~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~y 176 (604)
.|++++|...+......- . .|... ........+...|+++.+...++...+.-...+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 889999999888775421 0 11111 1122233456789999999999888764222221 3456677778
Q ss_pred HhcCCHHHHHHHHccCCC-------CC--cchHHHHHHHHHhCCCchHHHHHHHHHHH----CCCC--C-CHHHHHHHHH
Q 044872 177 AKCGNMEKARRVFDQMPE-------KD--IVSWSSMIQGYASNGFPKEALDMFYNMQR----ENLK--P-EYYTMVGVLS 240 (604)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~ 240 (604)
...|++++|...+++... +. ..+++.+...+...|++++|...+++... .+.. | ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 889999999888877642 11 12445566778889999999998887654 2221 1 2233444455
Q ss_pred HHHccCchHHHHHHHHHHHHc----CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----C-CcccHHH-----HHH
Q 044872 241 ACASLGALELGVWASSFMERN----EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD----K-DQVVWNA-----VVS 306 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~-----li~ 306 (604)
.+...|+++.|...+...... +.......+..+...+...|+.+.|...++.... . ....+.. .+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 566779999999888877542 2111234445567778889999999888877632 1 1111211 224
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCCc-hHHHHHHHHHH
Q 044872 307 GLSMNGYVKVAFGVFGQLEKCGIQPNG---NTFVGLLCGCTHAGLVDEGRQFFNSMSRV---FSLTPM-IEHYGCMVDLL 379 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~~~~li~~~ 379 (604)
.+...|+.+.|..++.+.......... .....+..++...|+.++|...++..... .+..++ ..+...+..+|
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 455688999999988775442111111 12345666788889999999988876542 233332 34566677888
Q ss_pred hhcCCHHHHHHHHHhC
Q 044872 380 GRSGQLDEAHELIKSM 395 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~ 395 (604)
.+.|+.++|.+.+.+.
T Consensus 742 ~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 742 WQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999998877
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=4.6e-06 Score=75.30 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=92.5
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGC-RLHKK--TDLA 420 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~~~--~~~a 420 (604)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45566666666666532 2345777888888888888888888888877 5555 455777777764 66676 5899
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.++++++++.+|+++.++..++..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999998754
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=8.1e-06 Score=74.28 Aligned_cols=304 Identities=15% Similarity=0.140 Sum_probs=154.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHHH-HHHHHHhC
Q 044872 134 IVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWSS-MIQGYASN 210 (604)
Q Consensus 134 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~ 210 (604)
+.+++..+.+-.+++.+.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3344444444445555555555444432 22444455566666666666666666666543 22222221 13344556
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044872 211 GFPKEALDMFYNMQRENLKPEYYTMVGVLSA--CASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACK 288 (604)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (604)
+.+.+|+++...|... |+...-..-+.+ .-+.+++..++.+.++.-.. .+..+.+...-...+.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6677777776666432 221111111111 11233444444444333211 122222333333445666666666
Q ss_pred HHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 044872 289 VFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS 364 (604)
Q Consensus 289 ~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 364 (604)
-|+...+ .....||..+.- .+.|+++.|+++..+.+++|++-.+.. ..|...++..+ +. -
T Consensus 166 kFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDv-rs-----v 229 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDV-RS-----V 229 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCch-hc-----c
Confidence 6665544 233445544433 345666666666666666655321110 00000000000 00 0
Q ss_pred CCCchHHHHHHH-------HHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 365 LTPMIEHYGCMV-------DLLGRSGQLDEAHELIKSMPM----EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 365 ~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
-.|-.-+-+.++ ..+.+.|+++.|.+-+-.||- ..|++|...+.-. -..+++..+.+-+.-+++++|-
T Consensus 230 gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 230 GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 001111223333 335678899999999988842 2466766554322 2345566677777778888988
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 434 NSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
.+.++..+.-+|++..-++-|..++-+-
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 8889999999999998888888876643
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=3.4e-06 Score=71.99 Aligned_cols=121 Identities=9% Similarity=-0.011 Sum_probs=80.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 044872 319 GVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-P 396 (604)
Q Consensus 319 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 396 (604)
.+|++..+ +.|+. +.....++...|++++|...|+.+.. ..| +...+..+..++.+.|++++|...|+.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555555 44553 33455566677777777777777663 334 4566667777777777777777777776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 397 MEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 397 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
..| +...|..+..++...|+.++|...++++++..|+++..+...+.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344 45577777777777777777777777777777777777766665543
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.50 E-value=1.8e-06 Score=73.71 Aligned_cols=106 Identities=10% Similarity=-0.061 Sum_probs=91.0
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
+++... .+.|+. +..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...|+++++++|
T Consensus 15 ~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 15 ILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 444444 345553 556778889999999999999987 5555 566999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 433 WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 433 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+++..+..++.++...|++++|...++...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998754
No 112
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.48 E-value=0.00035 Score=65.20 Aligned_cols=333 Identities=14% Similarity=0.127 Sum_probs=188.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH---HHHHhcCCChHHHHHHHHHHHHhCCCCChhH-HH
Q 044872 95 NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRV---LTACTQLGDLSTAKWIHGYVNEAGKGRNVFV-AT 170 (604)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~ 170 (604)
++.---.+...+...|++.+|+.-|...++. |+..|.++ ...|...|....|..=+..+++. .||-.. --
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3334445667778888899999988888763 33334443 34677788888888877777764 455321 11
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALEL 250 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (604)
.-...+.+.|.++.|..-|+.+.+.++.- +....++.+.-..++-. .....+..+...|+...
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQN 173 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhh
Confidence 22345678888888888888876533210 00011111110011111 11112222333444444
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 044872 251 GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327 (604)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 327 (604)
+......+++.. ..|...+..-..+|...|++..|..-++...+ .+....--+-..+-..|+.+.++...++-.+
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK- 251 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK- 251 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-
Confidence 444444444433 22445555555555666666555544443322 2333444444445555566555555555554
Q ss_pred CCCCCHHH----HHHH---------HHHHhccCcHHHHHHHHHHchhhcCCCCch-----HHHHHHHHHHhhcCCHHHHH
Q 044872 328 GIQPNGNT----FVGL---------LCGCTHAGLVDEGRQFFNSMSRVFSLTPMI-----EHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 328 g~~p~~~t----~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~ 389 (604)
+.||... |..+ +......+.+.++.+..+...+. .|.. ..+..+-..+...|++.+|+
T Consensus 252 -ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 252 -LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred -cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHH
Confidence 4455421 1111 01122345666666666666532 3431 22334446677789999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 390 ELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 390 ~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
+...+. .+.|| +.++.--..+|.....++.|+.-|+++.+.+|++..+-.-+ +.|.++.++..+++.
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl----------e~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL----------ERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH----------HHHHHHHHHhccchH
Confidence 988877 67776 55888888899999999999999999999999876443332 566666666655544
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=1.1e-05 Score=86.36 Aligned_cols=138 Identities=12% Similarity=0.065 Sum_probs=106.8
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGC 374 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 374 (604)
++..+-.|.....+.|++++|..+++...+ +.||. .....+..++.+.+.+++|....+.... ..|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence 466777777888888999999999998888 77876 4566777788888999999988888874 3554 556677
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
+..++.+.|++++|.++|++. ...|+ ..+|.++..++...|+.++|...|+++++...+....|.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 778888899999999999888 23444 568888888888899999999999988876644434443
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=4e-05 Score=83.51 Aligned_cols=233 Identities=15% Similarity=0.101 Sum_probs=179.3
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC-CC---CChhHHHHHHHHHHhcCChHHHHHHhccC
Q 044872 16 EFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG-LD---CDEFVKTSLLNLYVHCGYLADALKVFDDI 91 (604)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 91 (604)
+=|+++....+. +...|...+......++++.|+.+.+++++.= +. --..+|.+++++-...|.-+...++|++.
T Consensus 1445 eDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 345555554322 56678888888889999999999999988751 11 12347888888888888888999999988
Q ss_pred CCC-C-cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CChhH
Q 044872 92 PDK-N-VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKG-RNVFV 168 (604)
Q Consensus 92 ~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~ 168 (604)
.+- | -..|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++..+++.-.. -.+..
T Consensus 1524 cqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred HHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 762 3 456889999999999999999999999875 3346677888899999999999999999998886322 14556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEY--YTMVGVLSACA 243 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~ 243 (604)
..-.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-. +.|...|..--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 66777888999999999999998865 34678999999999999999999999999998887743 33444444433
Q ss_pred ccCchHH
Q 044872 244 SLGALEL 250 (604)
Q Consensus 244 ~~~~~~~ 250 (604)
+.|+-..
T Consensus 1683 ~~Gde~~ 1689 (1710)
T KOG1070|consen 1683 SHGDEKN 1689 (1710)
T ss_pred hcCchhh
Confidence 4444333
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3.5e-07 Score=55.66 Aligned_cols=33 Identities=42% Similarity=0.560 Sum_probs=26.0
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044872 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK 294 (604)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 294 (604)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667778888888888888888888888887774
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=2.8e-05 Score=77.42 Aligned_cols=215 Identities=16% Similarity=0.137 Sum_probs=154.6
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 044872 141 CTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEAL 217 (604)
Q Consensus 141 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 217 (604)
+.+.|++..|.-.|+..++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888876 44677888888888888888888888877765 35566777778888888888999
Q ss_pred HHHHHHHHCCCC--------CCHHHHHHHHHHHHccCchHHHHHHHHH-HHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044872 218 DMFYNMQRENLK--------PEYYTMVGVLSACASLGALELGVWASSF-MERNEFLSNPVLGTTLIDMYAKCGRMAQACK 288 (604)
Q Consensus 218 ~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (604)
..|+.-.....+ ++..+-.. ........+....++|-. ....+..+|+.++..|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888887553210 00000000 011111223334444433 3445556788888888888999999999999
Q ss_pred HHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 289 VFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 289 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.|+.... .|...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|...|-.+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9998764 3678999999999999999999999999988 888863 44456667889999999988877554
No 117
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=9e-05 Score=71.99 Aligned_cols=177 Identities=10% Similarity=0.047 Sum_probs=108.7
Q ss_pred CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCH--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHH
Q 044872 282 RMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYV--KVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 282 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
+++++...++++.+ ++..+|+.....+.+.|+. ++++.+++++.+ ..| |...|.....++...|+++++++.
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35566666655543 2333455443334444442 556667767766 334 345666666666667777777777
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHH
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRS---GQ----LDEAHELIKSM-PMEP-NAIVWGALLAGCRLH----KKTDLAEH 422 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~----~~~~~a~~ 422 (604)
++.+.+. . .-+...|+....++.+. |. .+++.++..++ ...| |...|+-+...+... ++..+|..
T Consensus 165 ~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 7777643 1 12344454444444333 22 24566666444 5555 556898888888773 44567888
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhcC------------------ChHHHHHHHHHHh
Q 044872 423 VLNQLIALEPWNSGNYVLLSNIYSASH------------------KWNDAAKIRSMMG 462 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 462 (604)
.+.++++.+|.++.++..|+++|.... ..++|.++++.+.
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 899988889999999999999998643 2366777777773
No 118
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=6.2e-06 Score=69.17 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
.+..-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444445666678899999999999988 4455 55689999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhh
Q 044872 447 ASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~ 463 (604)
..|+.+.|.+-|+....
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998876
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=2.6e-05 Score=73.23 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC-cc---cHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFL-S-NPVLGTTLIDMYAKCGRMAQACKVFREMKD--KD-QV---VWN 302 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 302 (604)
....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4556777788889999999999999999876432 1 124667788899999999999999999865 22 22 355
Q ss_pred HHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 303 AVVSGLSMN--------GYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 303 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
.+..++.+. |+.++|.+.|+++.. ..|+.. ....+.... ... .... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~----~~~------~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMD----YLR------NRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHH----HHH------HHHH---------HHHH
Confidence 555566654 788999999999988 456542 221111110 000 0000 1122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
.+...|.+.|++++|...++.. |..|. ...|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788999999999998887 32333 45888899999999999999998888776555
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.33 E-value=7.4e-05 Score=67.50 Aligned_cols=154 Identities=10% Similarity=0.095 Sum_probs=115.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGR 353 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 353 (604)
+-.|.+.|+++......+.+..+. . .|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456888888887766554433321 0 1223566788888888877732 345678888888999999999999
Q ss_pred HHHHHchhhcCCCC-chHHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 354 QFFNSMSRVFSLTP-MIEHYGCMVDL-LGRSGQ--LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 354 ~~~~~~~~~~~~~p-~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
..|+...+ +.| +...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998884 345 56777777776 467777 59999999988 5556 5568888888999999999999999999
Q ss_pred HccCCCCchhHH
Q 044872 428 IALEPWNSGNYV 439 (604)
Q Consensus 428 ~~~~p~~~~~~~ 439 (604)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999887654443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.30 E-value=4.7e-05 Score=68.66 Aligned_cols=135 Identities=15% Similarity=0.053 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 044872 329 IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGA 406 (604)
Q Consensus 329 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 406 (604)
..|+......+-.++...|+-+....+...... .-..+......++....+.|++.+|...|.+. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 455443335555667777777777777766542 33345556666888888999999999999888 44567779999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+.-+|.+.|+++.|...|.+++++.|+++..+..|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988876543
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.29 E-value=0.0047 Score=61.55 Aligned_cols=148 Identities=10% Similarity=0.015 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHH
Q 044872 314 VKVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 314 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
.+.....++++... .+.|+ .+|..+++.-.+..-++.|+.+|.++.+. +..+ ++.++++++.-|+ .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 44555666666542 23333 45777777777888888888888888876 5555 6777777777554 5777888888
Q ss_pred HHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcc--CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 392 IKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIAL--EPW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 392 ~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|+-- ..-+|.. --...+.-+...++-..+..+|++++.. .|+ ....|..+++--+.-|+...+.++-+++...
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8754 2234443 3455666677788888888888888865 333 2357888888888888888888887777654
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=5.7e-05 Score=77.32 Aligned_cols=189 Identities=17% Similarity=0.144 Sum_probs=155.1
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLC 341 (604)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 341 (604)
+++|-...-..+.+.+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566678899999999999999999986 4788899999999999999999988877 5789999999999
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.......+++|.++++....+ .-..+.....+.++++++.+.++.- .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888899999999876532 1111222233478899998888765 5555 34588888888889999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|.+.|.....++|++..+|++++-+|.+.|+-.+|...+++..+-+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999988765
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00016 Score=74.23 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=164.4
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 162 KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSA 241 (604)
Q Consensus 162 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (604)
++|--.....+...+.++|-..+|..+|++. ..|...|.+|...|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455566677889999999999999999884 5788899999999999999998887776 37888888888888
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHH
Q 044872 242 CASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAF 318 (604)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 318 (604)
..+..-+++|.++.+..... ....+.....+.++++++.+.|+.-.+- -..+|-....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778887777665322 1122222233468888888888875543 3467888888888888999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 319 GVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 319 ~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+- + ..+...|...+-.....|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99988877 67765 57888988999999999999888888753 4 333445666666777888999988888776
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.20 E-value=2.4e-05 Score=66.25 Aligned_cols=101 Identities=23% Similarity=0.260 Sum_probs=81.3
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH
Q 044872 365 LTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL 441 (604)
Q Consensus 365 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (604)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 345566667788888888888888877 4344 556788888888888999999999999999999988999999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCC
Q 044872 442 SNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+.+|...|++++|...++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999998887643
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.20 E-value=2.7e-06 Score=52.56 Aligned_cols=35 Identities=37% Similarity=0.880 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDS 131 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 131 (604)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00029 Score=69.21 Aligned_cols=143 Identities=13% Similarity=0.050 Sum_probs=109.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL-LCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDL 378 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~ 378 (604)
+-...-.+...|.+++|+..++.+.. -.||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.+.++
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHH
Confidence 33334445567899999999999887 56766555544 467888999999999999888 44666 4455667788
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... +..|+..|+|++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 99999999999999887 33346779999999999999877666654 456778899999999
Q ss_pred HHHHHhhCC
Q 044872 457 IRSMMGDKG 465 (604)
Q Consensus 457 ~~~~m~~~~ 465 (604)
......++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 988888753
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.001 Score=65.49 Aligned_cols=120 Identities=19% Similarity=0.166 Sum_probs=104.4
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~ 419 (604)
.....|.+++|+..++.+.+. .+-|+.......+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 355689999999999998853 3344666667779999999999999999998 66777 5578888899999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
|..+++....-+|+++..|..|+..|...|+..+|...+.++-.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887754
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.5e-06 Score=51.54 Aligned_cols=34 Identities=32% Similarity=0.666 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00024 Score=64.16 Aligned_cols=152 Identities=15% Similarity=0.145 Sum_probs=89.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhc
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRS 382 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 382 (604)
+-..+...|+.+.+..+..+... ..| |............+.|++.+|...|.+... .-++|...|+.+.-.|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 33445555555555555554332 122 223333455556666666666666666653 3345566666666666666
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044872 383 GQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 383 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
|++++|..-|.+. .+.| +....+.|...+.-.|+.+.|..++.......+.++..-..|+-+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 6666666666555 3333 334556666666666777777777766666666666666666666667777766666533
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0012 Score=59.78 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH-H
Q 044872 381 RSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK-I 457 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~ 457 (604)
-.+.+.+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..+++++.+...++-.-...|+-.++.. .
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 345677788888888 3567888888888888899999999999999999888888888888877777787665543 3
Q ss_pred HHHHh
Q 044872 458 RSMMG 462 (604)
Q Consensus 458 ~~~m~ 462 (604)
..+.+
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 132
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.00051 Score=73.73 Aligned_cols=143 Identities=11% Similarity=0.114 Sum_probs=115.2
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHH
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN-TFVG 338 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ 338 (604)
...++..+..|.......|.+++|+.+++...+ | +...+..+..++.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 344678888899999999999999999999875 4 445677788899999999999999999998 567765 4555
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLA 409 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 409 (604)
+..++...|.+++|..+|+++... .+-+...+..+...+.+.|+.++|...|++. ...|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 667888999999999999999852 2233678888999999999999999999988 33455556555443
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.022 Score=60.46 Aligned_cols=218 Identities=13% Similarity=0.119 Sum_probs=118.9
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH--HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKAC--AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA 82 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 82 (604)
....+++..|+....++++.. |+. .|..+++++ .+.|..++|..+++.....+.. |..+...+-..|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 345677788888888877653 333 356666665 3677888888777766554433 6777888888888888888
Q ss_pred HHHHHhccCCCC--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC-C---------hHHH
Q 044872 83 DALKVFDDIPDK--NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLG-D---------LSTA 150 (604)
Q Consensus 83 ~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~---------~~~a 150 (604)
+|..++++.... +......+..+|++.+.+.+-.+.--+|.+ ..+-+.+.|-++++.....- . +..|
T Consensus 95 ~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 95 EAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 888888877653 333334445566776666544333333333 23345566666666543221 1 1223
Q ss_pred HHHHHHHHHhC-CCCChhHHHHHHHHHHhcCCHHHHHHHHcc-----CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 151 KWIHGYVNEAG-KGRNVFVATSLVDLYAKCGNMEKARRVFDQ-----MPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 151 ~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
....+.+++.+ ..-+..=.-.-.......|.+++|.+++.. ...-+...-+.-+..+...++|.+-.++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 33444443332 111111111112233445666666666622 111223333344555556666666666666666
Q ss_pred HCC
Q 044872 225 REN 227 (604)
Q Consensus 225 ~~g 227 (604)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 554
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=0.0004 Score=75.31 Aligned_cols=235 Identities=10% Similarity=0.005 Sum_probs=135.9
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhC
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASN 210 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 210 (604)
...+..|+..+...+++++|.++.+...+.. +.....|-.+...|.+.++.+++..+ .++......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 3456677777777777888777777665543 22233333344466666665555444 223333333
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 044872 211 GFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVF 290 (604)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (604)
.++.-...+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 3442223333344332 2234466677777888888888888888888877 44777788888888877 888888877
Q ss_pred HhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch
Q 044872 291 REMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNT-FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI 369 (604)
Q Consensus 291 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 369 (604)
.+. +..|...+++.++.++|.++.. ..|+... |..+++ .+....+..--.
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~----------------ki~~~~~~~~~~ 223 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIER----------------KVLGHREFTRLV 223 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHH----------------HHHhhhccchhH
Confidence 664 3336666778888888888877 3454432 222222 222211222223
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
.++-.+..-|-...+++++.++++.+ ...| |.....-++..|+
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34444555566667777777777766 3333 3334555555544
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=7.3e-05 Score=74.07 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=97.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
...+++..+...+.++.|..+|+++.+. .|+. ...++..+...++-.+|.+++++. ...| +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666677777888888888887754 3543 344667777778888888888777 3334 5556666666788
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
..++++.|..+++++.+..|++..+|..|+.+|.+.|++++|...++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999886
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=6.8e-06 Score=50.34 Aligned_cols=34 Identities=24% Similarity=0.609 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKP 129 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 129 (604)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3579999999999999999999999999998887
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0043 Score=67.58 Aligned_cols=277 Identities=9% Similarity=0.046 Sum_probs=174.5
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHH-HHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVL-TACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSL 172 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 172 (604)
.+...|..|+..|...+++++|.++.+...+. .|+...+.... ..+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 46678999999999999999999999977664 55655433222 244455554444333 23
Q ss_pred HHHHHhcCCHHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHH
Q 044872 173 VDLYAKCGNMEKARRVFDQMPE--KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALEL 250 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 250 (604)
++......++.....+...|.+ .+..++..+..+|-+.|+.++|.+.++++++.. +-|....+.+...++.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 3333333344333333333332 233477788999999999999999999999865 34677788888888888 9999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC-CC
Q 044872 251 GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC-GI 329 (604)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 329 (604)
|.++...++.. |....++..+..++.++...++.-...+ ..+.+.+... |.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f-------------~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFF-------------LRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHH-------------HHHHHHHHhhhcc
Confidence 99888776553 6667788899999888876655433332 2333333332 22
Q ss_pred CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044872 330 QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGR-SGQLDEAHELIKSMPMEPNAIVWGAL 407 (604)
Q Consensus 330 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l 407 (604)
.--..++..+-..|....+++++..+++.+.+ ..| |.....-++..|.. -+......+.++..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s------------ 284 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYKEKYKDHSLLEDYLKMS------------ 284 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHHHHccCcchHHHHHHHh------------
Confidence 23345566677788888999999999999884 344 34444444444431 11111111111111
Q ss_pred HHHHHhc-CChHHHHHHHHHHHccCCCCch
Q 044872 408 LAGCRLH-KKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 408 l~~~~~~-~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
..... .++..+..-|++.+.++|.+-.
T Consensus 285 --~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 285 --DIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred --ccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 12222 4567888889988888887643
No 138
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.021 Score=57.14 Aligned_cols=430 Identities=11% Similarity=0.092 Sum_probs=251.5
Q ss_pred CCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC--CCcccHHHHHH
Q 044872 27 LPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD--KNVVSWTAIIS 104 (604)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 104 (604)
+-|..+|..|++-+... ..++++..++++... ++..+..|..-|..-.+..+++..+++|.+-.. -++..|..-|+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 34888999999877555 899999999999875 566778899999998999999999999987554 47788888876
Q ss_pred HHHhC-CChhH----HHHHHHH-HHHCCCCCChh-hH---HHHHHHHhcCC------ChHHHHHHHHHHHHhCCCCChhH
Q 044872 105 GYINE-GNLEE----AINMFRR-LLHRGLKPDSF-SI---VRVLTACTQLG------DLSTAKWIHGYVNEAGKGRNVFV 168 (604)
Q Consensus 105 ~~~~~-g~~~~----A~~~~~~-m~~~g~~p~~~-t~---~~ll~~~~~~g------~~~~a~~~~~~~~~~g~~~~~~~ 168 (604)
---+. |+... -.+.|+- |.+-|+.+-+. .| ...+..--..| +++..++++..++...+..=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 43332 33332 2233333 23345443332 22 23333222233 45556677777665432211112
Q ss_pred HHHH------HHH-------HHhcCCHHHHHHHHccCCC------CCc---------------chHHHHHHHHHhCCCc-
Q 044872 169 ATSL------VDL-------YAKCGNMEKARRVFDQMPE------KDI---------------VSWSSMIQGYASNGFP- 213 (604)
Q Consensus 169 ~~~l------i~~-------y~~~g~~~~A~~~~~~~~~------~~~---------------~~~~~li~~~~~~g~~- 213 (604)
|+-. |+- --+...+..|+++++++.. ++. ..|-.+|.-=-.++.-
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 2111 110 1122345566666665431 111 1255555432222211
Q ss_pred -------hHHHHHHHH-HHHCCCCCCHHHHH-HHH----HHHHccCc-------hHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 214 -------KEALDMFYN-MQRENLKPEYYTMV-GVL----SACASLGA-------LELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 214 -------~~A~~~~~~-m~~~g~~p~~~t~~-~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
....-.+++ |.--+..|+..-.. .-+ ..+...|+ .+++..+++..+..-...+..+|.++
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112222 12234444432111 111 12223333 34555566555543333344455444
Q ss_pred HHHHHhcC---CHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 044872 274 IDMYAKCG---RMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH 345 (604)
Q Consensus 274 i~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 345 (604)
.+---..- ..+.....++++.. .-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-+ -
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-C 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-h
Confidence 33211111 13334444444432 234567777777777778999999999999988888 455666666654 4
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM---PMEPN--AIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a 420 (604)
.++.+-|..+|+.=.+++|-. ..-....++-+...++-..|..+|++. .+.|| ...|..++.--..-|++..+
T Consensus 414 skD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 SKDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred cCChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 688999999999877665433 344567788999999999999999988 23444 45999999999999999999
Q ss_pred HHHHHHHHccCCCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 421 EHVLNQLIALEPWNS----GNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
.++-++....-|.+. ..-..+.+.|.-.+.+..-..-++.|
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999988876555221 23345566666666655544444444
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00022 Score=70.69 Aligned_cols=127 Identities=14% Similarity=0.122 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHA 346 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 346 (604)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++..+|++++++.... .| +...+..-...|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 334456666677888999999999988877777777888888888888999999888863 34 444555555667788
Q ss_pred CcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMPMEP 399 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 399 (604)
++++.|..+.+.+. ...|+ ..+|..|...|...|++++|+-.++.+|..|
T Consensus 248 ~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 88899999988887 44565 5688888899999999999998888887554
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.3e-05 Score=49.02 Aligned_cols=34 Identities=26% Similarity=0.631 Sum_probs=30.4
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 230 (604)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 141
>PLN02789 farnesyltranstransferase
Probab=97.98 E-value=0.001 Score=64.69 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=131.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNG-YVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAG 347 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 347 (604)
+-..+.+.+..++|..+...+.+. +..+|+.-...+...| .+++++..++++.+. .|+. .++..-...+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 334455667788888888877653 3456666666666667 579999999999884 4443 45554444444555
Q ss_pred c--HHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC---
Q 044872 348 L--VDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH---KK--- 416 (604)
Q Consensus 348 ~--~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~--- 416 (604)
. .+++..+++.+.+ ..| +...|+...-++.+.|++++|++.++++ ...| |...|+.....+... |.
T Consensus 121 ~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 4 3677888888874 344 5677888888888999999999999998 4334 566887776665544 22
Q ss_pred -hHHHHHHHHHHHccCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHhh
Q 044872 417 -TDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS----HKWNDAAKIRSMMGD 463 (604)
Q Consensus 417 -~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 463 (604)
.+.+.....++++.+|+|..+|..+..++... ++..+|.+......+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 24677788899999999999999999999873 445667777666544
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.96 E-value=0.00025 Score=59.94 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=86.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 044872 320 VFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM 397 (604)
Q Consensus 320 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 397 (604)
++++... ..|+. .....+...+...|++++|.+.|+.+... .+.+...+..+...|.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45544 44556667788889999999999888753 2335677788888899999999999998877 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 398 EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 398 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.| +...|..+...+...|+.+.|...+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 4567777888899999999999999999999998754
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00035 Score=59.80 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=70.4
Q ss_pred cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~ 419 (604)
.++...+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+.. ...||. .....|...+...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56666666666666654322211 122233446666777777777777776 222332 234445566777788888
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
|...++.. .-.+..+..+..++++|.+.|++++|...|+..
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88777552 223334566777888888888888888887754
No 144
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.0031 Score=56.78 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=111.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHH---HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQVVWNAVV---SGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLV 349 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 349 (604)
++-+...+|+.+.|...++++.++=+.++.... .-+-..|++++|+++++.+.+.. +.|.+++..=+...-..|.-
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 333444567777777777766543222222111 12345788889999999888854 33556776666666667777
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH---KKTDLAEHVL 424 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~ 424 (604)
-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++ -+.| ++..+..+...+... .+.+.+.+.|
T Consensus 137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788877777765 45678888999999999999999999999888 3445 444555665554333 3788889999
Q ss_pred HHHHccCCCCchhHHH
Q 044872 425 NQLIALEPWNSGNYVL 440 (604)
Q Consensus 425 ~~~~~~~p~~~~~~~~ 440 (604)
.+.+++.|.+...+.-
T Consensus 215 ~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHhChHhHHHHHH
Confidence 9999998865544443
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.004 Score=56.54 Aligned_cols=156 Identities=15% Similarity=0.128 Sum_probs=91.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCc
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH----AGL 348 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~ 348 (604)
-...|...|++++|++.......-+....+ +..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 344566677777777776663222222222 23344556677777777777652 244555555555433 445
Q ss_pred HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC-hHHHHHHHH
Q 044872 349 VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKK-TDLAEHVLN 425 (604)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~ 425 (604)
+.+|.-+|++|.+ ...|+..+.+-...+....|++++|..+++.. ....++.+...++..-...|. .+--.+...
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 7777777777764 34666666666666677777777777777766 323345555555554444443 344456666
Q ss_pred HHHccCCCCc
Q 044872 426 QLIALEPWNS 435 (604)
Q Consensus 426 ~~~~~~p~~~ 435 (604)
++....|..+
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 6666667543
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.88 E-value=0.00017 Score=56.14 Aligned_cols=93 Identities=22% Similarity=0.194 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
+..+...+...|++++|.+.+++. ...|+ ...|..+...+...++++.|...+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566777788888888888876 33443 3567777778888899999999999999888888888889999999999
Q ss_pred ChHHHHHHHHHHhhC
Q 044872 450 KWNDAAKIRSMMGDK 464 (604)
Q Consensus 450 ~~~~A~~~~~~m~~~ 464 (604)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
No 147
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=2.1e-05 Score=60.19 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044872 382 SGQLDEAHELIKSM-PMEP---NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 457 (604)
.|++++|+.+++++ ...| +...|-.+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 2222 444566677788888888888888888 666676666777778888888888888888
Q ss_pred HHH
Q 044872 458 RSM 460 (604)
Q Consensus 458 ~~~ 460 (604)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0019 Score=58.05 Aligned_cols=160 Identities=15% Similarity=0.107 Sum_probs=124.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHh
Q 044872 302 NAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL-LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLG 380 (604)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 380 (604)
..++-+....|+.+.|...++++...- |.+.-...+ ..-+...|.+++|.++++.+.++ . +.|..++---+-+.-
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED-D-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc-C-cchhHHHHHHHHHHH
Confidence 334455667899999999999998753 554322211 12345679999999999999865 2 335666666666777
Q ss_pred hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC---ChHHHH
Q 044872 381 RSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH---KWNDAA 455 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 455 (604)
..|+.-+|++-+.+. .+..|...|.-|...|...|+++.|.-.+++++=..|.++..+..+++.+...| +.+-|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788888888877776 455689999999999999999999999999999999999999999999987666 567788
Q ss_pred HHHHHHhhCC
Q 044872 456 KIRSMMGDKG 465 (604)
Q Consensus 456 ~~~~~m~~~~ 465 (604)
+++.+..+..
T Consensus 212 kyy~~alkl~ 221 (289)
T KOG3060|consen 212 KYYERALKLN 221 (289)
T ss_pred HHHHHHHHhC
Confidence 8888887644
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=5.4e-05 Score=55.31 Aligned_cols=64 Identities=20% Similarity=0.145 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHhh
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH-KWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 463 (604)
+..+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999 79999999998875
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.82 E-value=0.00027 Score=58.05 Aligned_cols=93 Identities=12% Similarity=0.017 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSN 443 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 443 (604)
+-.++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++++++..|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455556666666666666655 22222 2244445566666667777777777666666553 345666666
Q ss_pred HHHhcCChHHHHHHHHHHhhC
Q 044872 444 IYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666777777777777666654
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.79 E-value=3.1e-05 Score=46.15 Aligned_cols=31 Identities=39% Similarity=0.839 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGL 127 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (604)
++||.||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999888764
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=0.00011 Score=52.97 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...+...|++++|...++++++..|+++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999999999999999999988764
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.00054 Score=56.27 Aligned_cols=103 Identities=14% Similarity=0.064 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLA 409 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~ 409 (604)
+..+...+...|++++|.+.|+.+.+.+.-.| ....+..+...+.+.|++++|.+.++.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555666666666666666654321111 1234455667777777777777777766 22233 346677777
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
.+...|+.+.|...++++++..|+++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888775543
No 154
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5.3e-05 Score=45.12 Aligned_cols=31 Identities=32% Similarity=0.597 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI 329 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 329 (604)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.71 E-value=0.002 Score=55.07 Aligned_cols=114 Identities=20% Similarity=0.107 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch--HHHHHHHHHHhhcCC
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNG----NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI--EHYGCMVDLLGRSGQ 384 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~ 384 (604)
.++...+...++.+.... |+. .....+...+...|++++|...|+.+... ...|.. .....|...+...|+
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCC
Confidence 566666666666666632 222 22333445566677777777777776654 222221 123334566667777
Q ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 385 LDEAHELIKSMPME-PNAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 385 ~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+++|+..++..+.. .....+......+...|+.++|...|+++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777777665322 23345555566677777777777777664
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.67 E-value=0.00056 Score=68.09 Aligned_cols=85 Identities=14% Similarity=0.069 Sum_probs=48.3
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
+...|++++|++.|+++ ...| +...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34455555555555555 3333 233555555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6665554
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.00048 Score=63.57 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=76.0
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDL 419 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~ 419 (604)
..+.+++++|+..|...+ .+.|+ ...|..-..+|.+.|.++.|++-.+.. .+.|... +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 456777888888888777 45664 444455567888888888888877766 6667654 89999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
|++.|+++++++|++......|-.+--
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 999999999999988755555544433
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.00012 Score=67.34 Aligned_cols=87 Identities=18% Similarity=0.193 Sum_probs=79.0
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 454 (604)
+-+.+.+++++|+..|.+. .+.| |.+.|..-..+|.+.|.++.|.+-.+..++++|..+.+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3466789999999999887 6666 6677788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 044872 455 AKIRSMMGD 463 (604)
Q Consensus 455 ~~~~~~m~~ 463 (604)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999998876
No 159
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.64 E-value=0.13 Score=54.83 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=126.1
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH--
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLA-- 82 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-- 82 (604)
+.+.|+.++|..+++.....+.. |..|...+-.++...+..+++..+++..... .|+......+..+|++.+.+.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988766544 7788888888888999999999999998875 456777777888888877654
Q ss_pred --HHHHHhccCCCCCcccHHHHHHHHHhCC-Ch---------hHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHH
Q 044872 83 --DALKVFDDIPDKNVVSWTAIISGYINEG-NL---------EEAINMFRRLLHRGLKP-DSFSIVRVLTACTQLGDLST 149 (604)
Q Consensus 83 --~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~---------~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~ 149 (604)
.|.+++...+.+ ...+-++++.+.+.- .+ .-|.+.++.+.+.+-+. +..-...-+..+...|+.++
T Consensus 130 Qkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 578888877654 444444555555432 12 23445556665543111 11122222334456788999
Q ss_pred HHHHHHH-HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 044872 150 AKWIHGY-VNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE 194 (604)
Q Consensus 150 a~~~~~~-~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 194 (604)
|..++.. ....-..-+...-+--++.+.+++++.+..++-.++..
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 9998843 33333344556667778899999999888777666654
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.00083 Score=59.43 Aligned_cols=81 Identities=16% Similarity=0.069 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|++...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666677778888887777766 22222 35777788888899999999999999999999888888888888
Q ss_pred HHhcCC
Q 044872 445 YSASHK 450 (604)
Q Consensus 445 ~~~~g~ 450 (604)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.58 E-value=0.00084 Score=59.16 Aligned_cols=94 Identities=11% Similarity=-0.077 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
...+..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788889999999998877 33332 3478888889999999999999999999999998888888888
Q ss_pred HHH-------hcCChHHHHHHHHHHh
Q 044872 444 IYS-------ASHKWNDAAKIRSMMG 462 (604)
Q Consensus 444 ~~~-------~~g~~~~A~~~~~~m~ 462 (604)
+|. ..|++++|...+++..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 888 8888887776666553
No 162
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.56 E-value=0.011 Score=50.56 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC-CCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHH
Q 044872 329 IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL-TPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP---NAIV 403 (604)
Q Consensus 329 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~ 403 (604)
..|+...-..|..+....|+..+|...|++... |+ .-|....-.+.++....+++.+|...+++. ...| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777888899999999999999998875 44 445667777788888899999999999887 2222 2234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 404 WGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 404 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.-.+.+.+...|...+|+..|+.++...| ++..-...+.++.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45567789999999999999999999888 456777788899999999988876665554
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.52 E-value=0.0028 Score=56.02 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=74.7
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN--GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGC 374 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 374 (604)
...+..+...+...|++++|...|++.......|. ...+..+...+.+.|++++|...+....+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence 34555666666677777777777777765332222 245556666667777777777777766632 33 2444445
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 375 MVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+..+|...|+...+..-++.. ...++.|.+.++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 555555555554443222211 112577888888888888865 4445555544443
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.004 Score=64.89 Aligned_cols=65 Identities=28% Similarity=0.223 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+...|.++.-.....|++++|...++++++++| +..+|..++.++...|+.++|.+.+++....+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566555555566777777777777777777 45677777777777777777777777766543
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00041 Score=49.85 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=49.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345678889999999999888 55565 44888888899999999999999999999999864
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.47 E-value=0.0017 Score=64.74 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=64.6
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
....|++++|++.|+.+.+ ..| +...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3445666666666666653 233 3445555666666677777777776666 4444 34466677777777788888
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
|...++++++++|+++.....+..+..
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888888888888877766666555543
No 167
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0032 Score=60.44 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=95.3
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG-CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL 378 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 378 (604)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 56667777777777888888888887532 2233344444333 333577777999999888754 4566778888999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 379 LGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999987 223333 4999999999999999999999999998888743
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.42 E-value=0.002 Score=49.79 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 373 GCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
..+...+...|++++|.+.++.. ...| +..+|..+...+...|+.+.|...+++.++..|
T Consensus 38 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 38 YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 33344444444455555444443 2122 223455555555555666666666665555544
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.00024 Score=51.70 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=44.3
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...|++++|.+.++++++.+|+++..+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45788888999999998888988888888999999999999999888877654
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.40 E-value=0.0019 Score=54.67 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=77.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
..-+-..|++++|..+|.-+ -.. -+..-|..|...|...++++.|...|..+..++++|+..+...+.+|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34455789999999999887 222 3566788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 044872 454 AAKIRSMMGD 463 (604)
Q Consensus 454 A~~~~~~m~~ 463 (604)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998876
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.00051 Score=50.73 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=50.9
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
..+.+.++++.|.++++++++++|+++..+...+.++.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467888999999999999999999999999999999999999999999999888654
No 172
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0016 Score=60.54 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=83.4
Q ss_pred CCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 366 TPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRL---HKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 366 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
+-|.+.|-.|...|.+.|+.+.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 346788888999999999999999988877 4444 45566666666432 335788999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
|+-.+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.31 E-value=0.19 Score=48.90 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=73.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGR 353 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 353 (604)
|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... .- .++-|..++.+|...|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHH
Confidence 44456678888888888888778888888888888888888776654322 12 2366777788888888888888
Q ss_pred HHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 354 QFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 354 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
.+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7776532 134567778888888887765443
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0092 Score=57.58 Aligned_cols=267 Identities=13% Similarity=0.010 Sum_probs=157.4
Q ss_pred HHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCc
Q 044872 172 LVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGA 247 (604)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~ 247 (604)
..+.+.+..++..|+..+....+ .+..-|..-...+..-|++++|+--.+.-++ ++|. ..+....-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHH
Confidence 33455566666666666655443 2344455555666666666666655444333 2222 1233333333333444
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Cc--ccHHHHH-HHHHhCCCHHHHHHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQ--VVWNAVV-SGLSMNGYVKVAFGVF 321 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~li-~~~~~~g~~~~A~~~~ 321 (604)
..+|.+.+. +...+ ....|...++.+... .+ ..|..+- .++...|++++|.+.-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444443333 00000 111122222222211 12 2232222 3566678888888777
Q ss_pred HHHHHCCCCCCHHHHHHHH--HHHhccCcHHHHHHHHHHchhhcCCCCchHHHH-------------HHHHHHhhcCCHH
Q 044872 322 GQLEKCGIQPNGNTFVGLL--CGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG-------------CMVDLLGRSGQLD 386 (604)
Q Consensus 322 ~~m~~~g~~p~~~t~~~ll--~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-------------~li~~~~~~g~~~ 386 (604)
....+ ..++.. +..++ .++...++.+.+...|++.. .+.|+-..-. -=.....+.|++.
T Consensus 193 ~~ilk--ld~~n~-~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 193 IDILK--LDATNA-EALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHh--cccchh-HHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 66665 233221 22222 23455678888888888776 4455532211 1123456789999
Q ss_pred HHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 387 EAHELIKSM-PMEP-----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 387 ~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
+|.+.+.+. .+.| +...|.....+..+.|+.++|+.-.+.+++++|.-..+|..-++++...++|++|.+-+++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 5444 4455666666778999999999999999999998888999999999999999999999998
Q ss_pred HhhCCC
Q 044872 461 MGDKGI 466 (604)
Q Consensus 461 m~~~~~ 466 (604)
..+...
T Consensus 347 a~q~~~ 352 (486)
T KOG0550|consen 347 AMQLEK 352 (486)
T ss_pred HHhhcc
Confidence 876433
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0042 Score=59.59 Aligned_cols=129 Identities=9% Similarity=0.043 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR-SGQLDEAHELIKSM--PMEPNAIVWGALLAG 410 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~ 410 (604)
.+|..++....+.+.++.|+.+|..+.+.... +..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888999999999999999999854222 34455555555334 56666799999988 344577789999999
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNS---GNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...++.+.|..+|++.+..-|.+. ..|...++.-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998665543 47888888889999999999999988764
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.21 E-value=0.00024 Score=43.06 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=30.7
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 424 LNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 424 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.21 E-value=0.014 Score=60.86 Aligned_cols=140 Identities=13% Similarity=0.071 Sum_probs=101.9
Q ss_pred CCCcccHHHHHHHHHh--CC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcc--------CcHHHHHHHHHHch
Q 044872 295 DKDQVVWNAVVSGLSM--NG---YVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHA--------GLVDEGRQFFNSMS 360 (604)
Q Consensus 295 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 360 (604)
..|...|...+.+... .+ ....|..+|++..+ ..|+. ..+..+..++... ..+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3577899999887543 32 37789999999999 67876 4555544443222 12334444444433
Q ss_pred hhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 361 RVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 361 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.......+...|.++.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21112334567777766667789999999999998 77788889999999999999999999999999999998874
No 178
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.35 Score=50.17 Aligned_cols=202 Identities=11% Similarity=0.143 Sum_probs=115.1
Q ss_pred CCCcccHHHHHHHHHccCChHHHHHHHHHHHHh-CCC--------CChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcc
Q 044872 27 LPTNFTFPFVLKACAREHDFQLGVRSHSLIVKA-GLD--------CDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVV 97 (604)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 97 (604)
.|.+..|..+.......-.++.|...|-..... |+. .+...-.+=|.+ -.|++++|++++-.+..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 355566766666555555566666655433111 110 111111122222 23788888888887777664
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044872 98 SWTAIISGYINEGNLEEAINMFRRLLHRGLKPD----SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLV 173 (604)
Q Consensus 98 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (604)
.|..+.+.|++-...++++. -|-..| ...+..+...++....++.|.+.+...-. ....+
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 35666677777666655532 111111 23566666666666677777776654321 12356
Q ss_pred HHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHH
Q 044872 174 DLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVW 253 (604)
Q Consensus 174 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 253 (604)
.+|.+..++++-+.+-..+++. ....-.|...+.+.|..++|.+.|-+- + .| ...+..|..++++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHH
Confidence 6666767777766666666653 334556777888888888888776442 1 12 234567777777777766
Q ss_pred HHHH
Q 044872 254 ASSF 257 (604)
Q Consensus 254 ~~~~ 257 (604)
+-+.
T Consensus 900 laq~ 903 (1189)
T KOG2041|consen 900 LAQR 903 (1189)
T ss_pred HHHh
Confidence 5443
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.18 E-value=0.0034 Score=60.29 Aligned_cols=257 Identities=15% Similarity=0.030 Sum_probs=150.2
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCchHHHHHHHHHHHH--c--CCC-CchhHHHHHHHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEYYT----MVGVLSACASLGALELGVWASSFMER--N--EFL-SNPVLGTTLIDM 276 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~--~--~~~-~~~~~~~~li~~ 276 (604)
-+++.|+....+.+|+..++.|- -|..| |..+-.+|...+++++|.++|..=+. . |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 46677777777777777777653 23333 44455566667777777777644211 0 000 011111223333
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C--CcccHHHHHHHHHhCCC--------------------HHHHHHHHHHH---
Q 044872 277 YAKCGRMAQACKVFREMKD-------K--DQVVWNAVVSGLSMNGY--------------------VKVAFGVFGQL--- 324 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 324 (604)
+--.|.+++|.-.-.+-.. + ....+..+...|...|+ .+.|.+.|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445556655543322111 1 12233344455544432 23344444332
Q ss_pred -HHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHH---chhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 044872 325 -EKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNS---MSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM--- 395 (604)
Q Consensus 325 -~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--- 395 (604)
.+.|-.. -...|..|.+.|.-.|+++.|+..++. +.+.+|-+.. ...+..+...+.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1222111 113456666666678899999988874 2334444332 346777888888899999999988764
Q ss_pred ----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHc----cC--CCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 396 ----PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIA----LE--PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 396 ----~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.+ ...-+.-+|.+.|....+++.|+..+.+-+. ++ .....++..|+++|...|..+.|..+...-.+
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 211 2344677888999999999999998877553 22 22346888999999999999999887765543
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.0014 Score=50.02 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGI-QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 388 (604)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777888888888777432 12344444567777777888888777776 2 22232 23333345667777777777
Q ss_pred HHHHHh
Q 044872 389 HELIKS 394 (604)
Q Consensus 389 ~~~~~~ 394 (604)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.00073 Score=49.06 Aligned_cols=54 Identities=30% Similarity=0.336 Sum_probs=24.2
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 382 SGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.|++++|.++|+++ ...| +...+..+...|...|++++|..+++++...+|+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 34444444444444 2222 333444444445555555555555555555555443
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.11 E-value=0.0068 Score=47.47 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------cHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKCGI-QPNGNTFVGLLCGCTHAG--------LVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+-+...+|+.|... +++|+.++|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 345555666999999999999999999 899999999998766532 345567788888865 8888888888
Q ss_pred HHHHHHhh
Q 044872 374 CMVDLLGR 381 (604)
Q Consensus 374 ~li~~~~~ 381 (604)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88876654
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.10 E-value=0.014 Score=56.22 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC
Q 044872 200 WSSMIQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
+..+...+.+.|++++|+++|++....
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344556666677777777777666553
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.08 E-value=0.0014 Score=47.74 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCC
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHK-KTDLAEHVLNQLIALEP 432 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 432 (604)
...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456677777788888888888888776 44554 448888888888888 79999999999988887
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.03 E-value=0.011 Score=59.09 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=58.4
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC----CCcchHH
Q 044872 128 KPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG--KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE----KDIVSWS 201 (604)
Q Consensus 128 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~ 201 (604)
+.+...+..++..+....+++.++.++-...... ...-..+..++|..|.+.|..+++..+++.=.. +|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3344455555555555555555555555444331 111223334555555555555555555544332 4555555
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044872 202 SMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACA 243 (604)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (604)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 555555555555555555555555444444455544444443
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.054 Score=52.19 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=62.8
Q ss_pred HHhcc-CcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC---CCC-----CCHH-HHHHH
Q 044872 342 GCTHA-GLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM---PME-----PNAI-VWGAL 407 (604)
Q Consensus 342 a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~-----p~~~-~~~~l 407 (604)
.|... |++++|.+.|+...+-+..... ...+..+...+.+.|++++|.++|++. ... .+.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 45555 6666666666655543221111 234555667788888888888888776 111 1111 22222
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCch-----hHHHHHHHHH--hcCChHHHHHHHHHH
Q 044872 408 LAGCRLHKKTDLAEHVLNQLIALEPWNSG-----NYVLLSNIYS--ASHKWNDAAKIRSMM 461 (604)
Q Consensus 408 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~m 461 (604)
+-.+...||...|...+++..+.+|.-.. ....|+.++- ....+++|..-|+.+
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 33455678888888888888888775322 2333444442 223344555555444
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.02 E-value=0.0091 Score=48.53 Aligned_cols=86 Identities=16% Similarity=-0.012 Sum_probs=59.1
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---CchhHHHHHHHHHhc
Q 044872 377 DLLGRSGQLDEAHELIKSM---PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW---NSGNYVLLSNIYSAS 448 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 448 (604)
.++-..|+.++|..+|++. +.... ...+-.+.+.++..|++++|..++++..+..|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 4556677777777777765 22221 225556677788888888888888888777676 555666677778888
Q ss_pred CChHHHHHHHHHHh
Q 044872 449 HKWNDAAKIRSMMG 462 (604)
Q Consensus 449 g~~~~A~~~~~~m~ 462 (604)
|+.++|.+.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 88888887765543
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.01 E-value=0.0082 Score=47.02 Aligned_cols=80 Identities=11% Similarity=0.052 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCChhHH
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGL-KPDSFSIVRVLTACTQLG--------DLSTAKWIHGYVNEAGKGRNVFVA 169 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 169 (604)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456667777999999999999999999 899999999999876543 233466788999999999999999
Q ss_pred HHHHHHHHh
Q 044872 170 TSLVDLYAK 178 (604)
Q Consensus 170 ~~li~~y~~ 178 (604)
+.++....+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887765
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.64 Score=48.90 Aligned_cols=323 Identities=15% Similarity=0.110 Sum_probs=153.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHhccCCC--CCcccHHHHHHHHHhCC
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCG---YLADALKVFDDIPD--KNVVSWTAIISGYINEG 110 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 110 (604)
++.-+...+.+..|.++-..+-..-... ..++.....-+.+.. +-+-+..+=+++.. ....+|..+.+-.-+.|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 4555556677777777766552211111 466666666666653 22334444444444 46678888888778888
Q ss_pred ChhHHHHHHHHHHHCCCC----CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 044872 111 NLEEAINMFRRLLHRGLK----PDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKAR 186 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (604)
+++-|..+++.=...+-. .+..-+...+.-+...||.+...+++-++.+.- +...+ +....+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l------~~~l~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL------FMTLRNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH------HHHHHhchhhh
Confidence 888888776542221100 122234455566666677666666655554421 11111 11112233444
Q ss_pred HHHccCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHH------HHCCCCCCHHHHHHHHHHHHccCchHHHHHHHH-H-
Q 044872 187 RVFDQMPE-KDIVSWSSMIQGYASNGFPKEALDMFYNM------QRENLKPEYYTMVGVLSACASLGALELGVWASS-F- 257 (604)
Q Consensus 187 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-~- 257 (604)
.+|.+..+ .|..+ + ..+.+.++-.+++.-|..= ...|..|+. .....++++........+..+ .
T Consensus 593 ~lY~~~~r~~~~~~---l-~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDRAT---L-YDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhchhh---h-hhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHH
Confidence 44444322 11111 1 1112222222222222110 011223332 223334443333211111111 1
Q ss_pred --------HH-HcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 044872 258 --------ME-RNEF-LSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327 (604)
Q Consensus 258 --------~~-~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 327 (604)
+. +.+. -.|..+ +--+.-+...|+..+|.++-.+..-||-..|---+.+++..+++++-+++-+.+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl-~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSL-HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHHHHhccccccCcH-HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 10 1111 112222 22233344566667777776666666666666666666666666655544443321
Q ss_pred CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHH
Q 044872 328 GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELI 392 (604)
Q Consensus 328 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 392 (604)
+.-|.-...+|.+.|+.++|..++.... +.. -.+.+|.+.|++.+|.++-
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 2334455666667777777766665443 111 3456666666666666553
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.94 E-value=0.0066 Score=57.21 Aligned_cols=94 Identities=14% Similarity=0.058 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHH
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLS 442 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 442 (604)
.|..-+..+.+.|++++|...|+.. ...|+. ..+--+...+...|+++.|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555555667777777777766 223332 355556677778888888888888888766664 44555667
Q ss_pred HHHHhcCChHHHHHHHHHHhhC
Q 044872 443 NIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877654
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.92 E-value=0.011 Score=59.17 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=86.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHhccCCC-C-----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 044872 62 DCDEFVKTSLLNLYVHCGYLADALKVFDDIPD-K-----NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIV 135 (604)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 135 (604)
..+......+++......+++++..++-+... | -..+..++|+.|.+.|..++++.++..=...|+=||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444555666666666677777777765543 1 23355688888888888889988888888888888999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 136 RVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179 (604)
Q Consensus 136 ~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (604)
.++..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99998888899888888888887776656666665555555554
No 192
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.87 E-value=0.025 Score=47.81 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=69.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAG 347 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 347 (604)
.+...+...|++++|.++|+.+.. .+..-|-.|..++-..|++++|+..|..... +.| |...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 344455678888888888887654 2456777788888888888888888888877 445 4467777778888888
Q ss_pred cHHHHHHHHHHchhhcCCCC
Q 044872 348 LVDEGRQFFNSMSRVFSLTP 367 (604)
Q Consensus 348 ~~~~a~~~~~~~~~~~~~~p 367 (604)
+.+.|++.|+..+...+-.|
T Consensus 118 ~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 118 NVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred CHHHHHHHHHHHHHHhccCh
Confidence 88888888887775443333
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.85 E-value=0.52 Score=45.93 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRL 413 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~ 413 (604)
.+.+..+.-|...|....|.++-.. +.+ |+...|...+.+|+..++|++-.++... +..++-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455556666778888777766544 444 7888899999999999999988877654 3345778889999999
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
.|+..+|.....++ .+..-..+|.++|+|.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999998888761 22456788999999999988755443
No 194
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.84 E-value=0.024 Score=49.81 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD--SFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++.+.+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555555566666666666666654322211 124555555555566666666665555543
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.83 E-value=0.0053 Score=60.83 Aligned_cols=63 Identities=13% Similarity=-0.100 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG---NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
...|+.+..+|...|++++|...|+++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666553 366666666666666666666666655
No 196
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.82 E-value=0.6 Score=46.21 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcc-------cHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 044872 269 LGTTLIDMYAKCGRMAQACKVFREMKD--KDQV-------VWNAVVSGLSM----NGYVKVAFGVFGQLEKCGIQPNGNT 335 (604)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-------~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 335 (604)
.+..++....+.++...|.+.+.-+.- |+.. +-.++-+..+. .-+...=+.+|+......+ |..-
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQ 377 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHH
Confidence 444555555666777776666654432 2111 11112222221 1123334455555555332 3321
Q ss_pred -HHHHH---HHHhccCc-HHHHHHHHHHchhhcCCCC-chHHHHHHH----HHHhhc---CC---HHHHHHHHHhCCCCC
Q 044872 336 -FVGLL---CGCTHAGL-VDEGRQFFNSMSRVFSLTP-MIEHYGCMV----DLLGRS---GQ---LDEAHELIKSMPMEP 399 (604)
Q Consensus 336 -~~~ll---~a~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~li----~~~~~~---g~---~~~A~~~~~~~~~~p 399 (604)
...++ .-+-+.|. -++|..+++.+.+ +.| |.+.-|.+. ..|..+ .. +-+-..++++.++.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 11122 12333444 6777777777763 333 333322221 222221 11 222334455556555
Q ss_pred ----CHHHHHHHHHH--HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 ----NAIVWGALLAG--CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ----~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...-|.|..| +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|..++..+..
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 33456667666 5789999999988888889999 889999999999999999999999997653
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.82 E-value=0.16 Score=41.16 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=87.5
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
.-.|..++..++..+...+. +..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34677888888888876632 44556666654444555555666666665443332 24555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 389 HELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
..-+-.++ .+......-+.....+|+-++-.+++..+...+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55444443 234455666778889999999999999988655557889999999999999999999999999999985
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.75 E-value=0.61 Score=45.21 Aligned_cols=302 Identities=15% Similarity=0.113 Sum_probs=176.7
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh--cCCChHHHHHHHHH
Q 044872 81 LADALKVFDDIPDKNVVSWTAIISGYIN--EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACT--QLGDLSTAKWIHGY 156 (604)
Q Consensus 81 ~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~ 156 (604)
...+.+.|..-. --.-|.+|-.++.- .|+-..|.++-.+-.+. +.-|...+..++.+-. -.|+.+.|++-|+.
T Consensus 69 P~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeA 145 (531)
T COG3898 69 PYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEA 145 (531)
T ss_pred cHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 334445554322 22346666555554 46777777766554432 4456666777776553 46899999999999
Q ss_pred HHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCC
Q 044872 157 VNEAGKGRNVFV--ATSLVDLYAKCGNMEKARRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRE-NLKP 230 (604)
Q Consensus 157 ~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p 230 (604)
|.. .|.... ...|.----+.|..+.|+..-+..-. | -...|.+.+...+..|+|+.|+++++.-+.. -+.+
T Consensus 146 Ml~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~ 222 (531)
T COG3898 146 MLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEK 222 (531)
T ss_pred Hhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhch
Confidence 876 222221 22233333567888888777666543 2 2357888999999999999999999877653 3455
Q ss_pred CHHH--HHHHHHHHHc---cCchHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH
Q 044872 231 EYYT--MVGVLSACAS---LGALELGVWASSFMERNEFLSNPVL-GTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAV 304 (604)
Q Consensus 231 ~~~t--~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 304 (604)
|..- -..++.+-+. ..+...++..-.+..+ +.||..- .-.-...|.+.|++.++-.+++.+-+.++..--..
T Consensus 223 ~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 223 DVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 5432 2233333221 1244455554444444 3333221 12234567888888888888888865333222222
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh-
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEK-CGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR- 381 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 381 (604)
+-.+.+.|+ .++.-+++... ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.=..
T Consensus 301 lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAe 375 (531)
T COG3898 301 LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhc
Confidence 223334443 44444444432 1256654 466666677777788877777666555 456777777766665543
Q ss_pred cCCHHHHHHHHHhC
Q 044872 382 SGQLDEAHELIKSM 395 (604)
Q Consensus 382 ~g~~~~A~~~~~~~ 395 (604)
.|+-.++...+.+.
T Consensus 376 tGDqg~vR~wlAqa 389 (531)
T COG3898 376 TGDQGKVRQWLAQA 389 (531)
T ss_pred cCchHHHHHHHHHH
Confidence 37777777777665
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.75 E-value=0.1 Score=53.40 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044872 214 KEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREM 293 (604)
Q Consensus 214 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 293 (604)
-+.+.-+++|++.|-.|+.... ...|+-.|.+.+|.++|.. .|.+ |..+.+|.....++.|.++...-
T Consensus 617 L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 3444556778888887886543 3456677788887777643 3333 23444555555555555554332
Q ss_pred CC--------------CCcccHHHHHHHHHhCCCHHHHHHHHHH------HHHCCCC---CCHHHHHHHHHHHhccCcHH
Q 044872 294 KD--------------KDQVVWNAVVSGLSMNGYVKVAFGVFGQ------LEKCGIQ---PNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 294 ~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~ll~a~~~~g~~~ 350 (604)
.. +|+.-=.+....+...|+.++|..+.-+ +.+-+-+ .+..+...+...+.+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 21 1222122333444556666666554321 1121111 23345555555566667777
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP-MEPNAI 402 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 402 (604)
.|-++|..|-. ..+++++....+++.+|..+-++.| ..||+.
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 88888887753 2467888889999999999998884 445543
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.74 E-value=0.29 Score=42.26 Aligned_cols=121 Identities=14% Similarity=0.129 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---IQPNGNTFVG 338 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ 338 (604)
++..--.|.......|+..+|...|++... .|....-.+..+....+++.+|...++++.+.. -.|| +...
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHH
Confidence 333333444444455555555555544332 233333334444444555555555555554422 1222 2333
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
+.+.+.-.|.+.+|+..|+.... .-|+...-......+.++|+.++|..-
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 44555556666666666666553 234444333344555666666555443
No 201
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.73 E-value=0.0032 Score=40.92 Aligned_cols=42 Identities=29% Similarity=0.416 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
.+|..+...+...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999988877764
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.72 E-value=0.64 Score=45.09 Aligned_cols=242 Identities=17% Similarity=0.128 Sum_probs=152.0
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 044872 209 SNGFPKEALDMFYNMQRENLKPEY--YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQA 286 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (604)
-.|++++|.+-|+.|... |.. .-+..+.-...+.|+.+.+.++-+..-..-.. -.....+++...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 356777777777777542 211 11223333335667777777666655443211 245667778888888888888
Q ss_pred HHHHHhcCC-----CCcc--cHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCcHHHHHHH
Q 044872 287 CKVFREMKD-----KDQV--VWNAVVSGLSM---NGYVKVAFGVFGQLEKCGIQPNGNTF-VGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 287 ~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~ 355 (604)
+++.+.-.. +|+. .-..|+.+-+. .-+...|...-.+..+ +.||.+.- .....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 888876543 3332 12223322211 2345556665555555 77876533 3345678999999999999
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
++.+-+ ..|.+..+... .+.|.|+. +..-+++. .++|| ..+...+..+-...|++..|..-.+.+...
T Consensus 286 lE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 998874 35665544332 34455553 22222222 34555 446667778888999999999999999999
Q ss_pred CCCCchhHHHHHHHHH-hcCChHHHHHHHHHHhhC
Q 044872 431 EPWNSGNYVLLSNIYS-ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 464 (604)
.|.. ..|..|+++-. ..|+-.+++..+.+....
T Consensus 359 ~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 9954 68889999875 559999998888877653
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.08 Score=48.17 Aligned_cols=236 Identities=13% Similarity=0.049 Sum_probs=139.5
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH-hcCCC-hHH-HHHHHHHHHHhCCCCChhHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTAC-TQLGD-LST-AKWIHGYVNEAGKGRNVFVATSL 172 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~-~~~-a~~~~~~~~~~g~~~~~~~~~~l 172 (604)
...|+.-+..+++....++|..-+..+.+.+ .||-+ |...=..+ .+.|. ..- .+-+|.++.+.- ..-+++|
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l----gnpqesL 142 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL----GNPQESL 142 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc----CCcHHHH
Confidence 3456666677777777777766555554332 11110 00000000 12222 111 223344444321 1225566
Q ss_pred HHHHHhcCCHHHHHHHHccCCC--CCc--------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044872 173 VDLYAKCGNMEKARRVFDQMPE--KDI--------VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSAC 242 (604)
Q Consensus 173 i~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (604)
...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++...+-+......+.+..
T Consensus 143 dRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~ 222 (366)
T KOG2796|consen 143 DRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRIS 222 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 6666655555555555544322 222 234566777777788888888898888866556777777888888
Q ss_pred HccCchHHHHHHHHHHHHcC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCH
Q 044872 243 ASLGALELGVWASSFMERNE-----FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~ 314 (604)
.+.|+.+.+...++.+.+.. +.-+..+.......|.-.+++..|...|.+++.. |+..-|.-.-+..-.|+.
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 88999999999998776643 3333334444445566778888899999887754 445555544445556888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 315 KVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 315 ~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
.+|++..+.|.. ..|...+-.++
T Consensus 303 ~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 303 KDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHhc--cCCccchhhhH
Confidence 899999999988 45655544433
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.0057 Score=45.00 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=51.2
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
..|.+.+++++|.+.++.+ ...|+ ...|......+...|+++.|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677889999999999888 55554 4477778888899999999999999999999987654433
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.70 E-value=0.016 Score=51.46 Aligned_cols=97 Identities=14% Similarity=0.296 Sum_probs=71.3
Q ss_pred HHHHHhc--CCCCcccHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 044872 287 CKVFREM--KDKDQVVWNAVVSGLSM-----NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA------------- 346 (604)
Q Consensus 287 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 346 (604)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 34566677777777664 467777788888999999999999999999887652
Q ss_pred ---CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC
Q 044872 347 ---GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 347 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 384 (604)
.+.+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 234567788888875 4888888888888888877665
No 206
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.68 E-value=0.1 Score=48.77 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=95.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcc---c---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHh
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQV---V---WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCT 344 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~---~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 344 (604)
....+.+.|++++|.+.|+.+....+. . .-.++.+|.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 344455677777777777777643221 1 123445666777777777777777763 3322 23333333322
Q ss_pred c--c---------------Cc---HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 044872 345 H--A---------------GL---VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVW 404 (604)
Q Consensus 345 ~--~---------------g~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 404 (604)
. . .+ ..+|...|+.+++. |-...-..+|...+..+...--...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-
Confidence 1 0 01 12233334444332 2222223333333322210000000
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
-.+..-|.+.|.+.-|..-++.+++.-|+. ..+...+..+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 123344778899999999999999877765 4577788999999999999999887664
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.60 E-value=0.064 Score=43.61 Aligned_cols=91 Identities=16% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC--CchhHHHHHHHHHH
Q 044872 203 MIQGYASNGFPKEALDMFYNMQRENLKPE--YYTMVGVLSACASLGALELGVWASSFMERNEFL--SNPVLGTTLIDMYA 278 (604)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~ 278 (604)
+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677788888888887777765544 223444555666666666666666666543211 01122222223444
Q ss_pred hcCCHHHHHHHHHhc
Q 044872 279 KCGRMAQACKVFREM 293 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~ 293 (604)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666655555443
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.072 Score=48.45 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC--CCc--------ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPD--KNV--------VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRV 137 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 137 (604)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++.+.++...+.++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555444444444444443222 122 23345566666667777888888888887666677777778
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHh
Q 044872 138 LTACTQLGDLSTAKWIHGYVNEAG-----KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYAS 209 (604)
Q Consensus 138 l~~~~~~g~~~~a~~~~~~~~~~g-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 209 (604)
.+...+.||.+.|...++...+.. ..-+..+.......|.-.+++..|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888888888888888776543 233333444444556667788888888887765 344455544444445
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 210 NGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
.|+..+|++..+.|... .|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 67788888888888764 34444333
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.56 E-value=0.63 Score=43.54 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=25.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHccCchHHHHHHHHHHHH
Q 044872 203 MIQGYASNGFPKEALDMFYNMQRENLKPEYYT--MVGVLSACASLGALELGVWASSFMER 260 (604)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 260 (604)
....+.+.|++++|.+.|+++...-..+.... ...+..++.+.++++.|...++..++
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444555566666666665555321111110 11223344444555555555544444
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.56 E-value=0.56 Score=48.36 Aligned_cols=223 Identities=17% Similarity=0.163 Sum_probs=107.4
Q ss_pred HHHHHHHHHccCChHHHHHH--HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 044872 33 FPFVLKACAREHDFQLGVRS--HSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEG 110 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 110 (604)
++..=++|.+.++..--+-+ ++.+.+.|-.|+... +...++-.|.+.+|.++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554432222 334555665566543 33455667888888888854 45
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
....|+++|..|+-- -..+-+...|+.++-+.+.+.-.+. ..++.--.+-..++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 555666666665431 1122333444444444433322111 001111123344555566666665543
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 191 QMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
..+|-.+-++++-+++-. .+..+...+..-+-+...+..|.++|..+-+.
T Consensus 727 -----------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 222222333333222211 12333434444444555566666666655332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHH
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
..++++....+++++|.++-++.++--...|-.-..-++...++++|.+
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH
Confidence 3566777777888888888777776322233333333344444444433
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.53 E-value=0.049 Score=51.42 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=66.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM----PMEP-NAIVWGALL 408 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll 408 (604)
.|...+......|++++|...|+.+.+.+.-.+- ...+-.+...|...|++++|...|+.+ |..| ....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444444557777777777777754322111 234555667777888888888888776 2222 233555566
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677789999999999999999999764
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.52 E-value=0.44 Score=46.94 Aligned_cols=157 Identities=14% Similarity=0.060 Sum_probs=86.1
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---Cc----ccHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044872 276 MYAKCGRMAQACKVFREMKDK---DQ----VVWNAVVSGLSM---NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 345 (604)
.|-...+++...++++.+... ++ ..--...-++.+ .|+.++|++++..+....-.++..|+..+...|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 355555666666666655542 11 111112223344 66777777777775555555666666655554422
Q ss_pred ---------cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHH----HHHHHH---Hh-C----CC--CCCHH
Q 044872 346 ---------AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLD----EAHELI---KS-M----PM--EPNAI 402 (604)
Q Consensus 346 ---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~-~----~~--~p~~~ 402 (604)
....++|...|.+.- .+.|+..+--.++.++...|... +..++- .. . .. ..|--
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 223566666666443 44565543333333444444322 122222 11 1 11 23444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.+.+++.++.-.|+.+.|.+.++++..+.|+.-
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 667889999999999999999999999887653
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=0.44 Score=49.53 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=79.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC-----CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 044872 274 IDMYAKCGRMAQACKVFREMKDK-----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL 348 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 348 (604)
|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-.. ....+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 44555556665555555442211 123555555555555555555555543211 0123334444444
Q ss_pred HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 349 VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+++-+.+-..+. -+....-.+.+++.+.|.-++|.+.+-+-+.+ .+-+..|...+++.+|.++.++..
T Consensus 838 f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 838 FGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred hhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHHhccCc------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444333333222 23333444556666666666666655554321 122334444555555544443311
Q ss_pred --ccCC----------CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 429 --ALEP----------WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 429 --~~~p----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+.+. .+ ....--+..+.++|+.-+|.+++.+|.++.
T Consensus 906 l~qv~tliak~aaqll~~-~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 906 LPQVQTLIAKQAAQLLAD-ANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred chhHHHHHHHHHHHHHhh-cchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 0000 00 011223456677777777777777776543
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.46 E-value=0.021 Score=50.72 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----------------CCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ----------------LGDLSTAKWIHGYVNEAGKGRNVFVATSLV 173 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 173 (604)
|..+=....+..|.+-|+.-|..+|+.||..+=+ ..+-+.|..++++|...|+-||..++..|+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3333334444555555555555555555544322 123455677777777777777777777777
Q ss_pred HHHHhcC
Q 044872 174 DLYAKCG 180 (604)
Q Consensus 174 ~~y~~~g 180 (604)
+.+++.+
T Consensus 146 ~iFG~~s 152 (228)
T PF06239_consen 146 NIFGRKS 152 (228)
T ss_pred HHhcccc
Confidence 7776654
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.42 E-value=1.1 Score=44.37 Aligned_cols=381 Identities=12% Similarity=0.074 Sum_probs=192.7
Q ss_pred hhcCCchHHHHHHHHHHhC--CCCC------------CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCC----CChhH
Q 044872 6 VSNDCFQHAIEFYNSMRNE--GFLP------------TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLD----CDEFV 67 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~ 67 (604)
-+.+.++.|++.|....+. +..| |-..=+..+.++...|++.+|+.++++++..=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3677888999988887665 3222 1111223456677889999999999888765433 68888
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC--C
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQL--G 145 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g 145 (604)
|+.++-+++++=-++. -+.+...=..-|-.+|-.|.+.=+ .++.-.-..+.|....+..++....-. .
T Consensus 170 yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred HHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence 8888878776532221 112221111224445555543211 111100011233333333333332221 1
Q ss_pred ChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHccCC--------CCCcchHHHHHHHHHhCCCchHH
Q 044872 146 DLSTAKWIHGYVNEAGKGRNV-FVATSLVDLYAKCGNMEKARRVFDQMP--------EKDIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 146 ~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A 216 (604)
.+.--.+++..-...-+.|+- .+...|+.-+.+ +.+++..+-+.+. +.=+.++..++...++.++..+|
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a 317 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEA 317 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 222233444444444344442 233344444444 3333333333221 12345677788888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHH-------HHHHHH-c---cCchHHHHHHHHHHHHcCCCCchhHHHHH---HHHHHhcCC
Q 044872 217 LDMFYNMQRENLKPEYYTMVG-------VLSACA-S---LGALELGVWASSFMERNEFLSNPVLGTTL---IDMYAKCGR 282 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~-------ll~~~~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~g~ 282 (604)
-+.+.-+.- +.|+...-.. +-+..+ . ..++..-..+++.+...++.... ...-| ..-+.+.|.
T Consensus 318 ~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~ 394 (549)
T PF07079_consen 318 KQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQ 394 (549)
T ss_pred HHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCC
Confidence 887766544 3343321111 111111 1 11222223344444444333211 11112 222444555
Q ss_pred -HHHHHHHHHhcCC---CCcccHHHHHH----HHHh---CCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHH--HHhc
Q 044872 283 -MAQACKVFREMKD---KDQVVWNAVVS----GLSM---NGYVKVAFGVFGQLEKCGIQPNGN----TFVGLLC--GCTH 345 (604)
Q Consensus 283 -~~~A~~~~~~~~~---~~~~~~~~li~----~~~~---~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~--a~~~ 345 (604)
-++|..+++.+.+ -|..+-|.... .|.+ ...+.+-+.+-+-..+.|++|-.+ .-+.+.. .+..
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 6777777777654 34444333221 2322 122333344444445667776332 2233332 2445
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGA 406 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 406 (604)
.|++.++.-+-..+. .+.|++.+|..+.-.+....++++|.+++..+| |+..+|++
T Consensus 475 qgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 778887776666555 567888888888777778888888888888876 46666554
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.06 Score=52.34 Aligned_cols=63 Identities=16% Similarity=-0.037 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++..|...+.+.+++..|++...+.++++|+|.-+.+.-+.+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456667777889999999999999999999999999999999999999999999999999873
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.0079 Score=44.96 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHcc----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIAL----EPW---NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6777777888888888888888887743 222 245677889999999999999999887754
No 218
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.21 E-value=0.21 Score=45.41 Aligned_cols=141 Identities=15% Similarity=0.112 Sum_probs=72.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQ-P-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR 381 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 381 (604)
....+.+.|++.+|.+.|+++...-.. | -......+..++.+.|+++.|...++...+.+.-.|... +...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 344455667777777777777653211 1 113444555666667777777777776665544444321 1111111111
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch-----------------hHHHHHHH
Q 044872 382 SGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG-----------------NYVLLSNI 444 (604)
Q Consensus 382 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 444 (604)
........ ......+....|...|+.+++..|+++. .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0012233455667777777777776542 22237888
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|.+.|++..|..-++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999874
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.13 E-value=0.28 Score=47.71 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=130.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHH--h--CC-CCChhHHHHHHH
Q 044872 104 SGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGYVNE--A--GK-GRNVFVATSLVD 174 (604)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~--~--g~-~~~~~~~~~li~ 174 (604)
.-+++.|+....+.+|+..++.|-. |.. .|..+..+|.-.+|+++|.++|..=+. . |- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3467788888888888888877643 433 355566677777888888887653221 1 10 001112223444
Q ss_pred HHHhcCCHHHHHHHHccCC-------C--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044872 175 LYAKCGNMEKARRVFDQMP-------E--KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASL 245 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (604)
.+--.|.+++|.-...+-. . ....++..+...|...|+.-.-. .-.+.|-.|+.++-
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~~---------- 169 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVTS---------- 169 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHHH----------
Confidence 4445566666654322211 1 01223444555555544321000 00001111211110
Q ss_pred CchHHHHHHHHH----HHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CC--CcccHHHHHHHHHhC
Q 044872 246 GALELGVWASSF----MERNEFL-SNPVLGTTLIDMYAKCGRMAQACKVFREMK-------DK--DQVVWNAVVSGLSMN 311 (604)
Q Consensus 246 ~~~~~a~~~~~~----~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~ 311 (604)
.++.|.++|.. +.+.|-. .--..|..|.+.|.-.|+++.|...-+.-. ++ .-..+..+..++.-.
T Consensus 170 -al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 170 -ALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 01111111111 1111100 012234445555555566665554332111 00 123455566667777
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHhccCcHHHHHHHHHHchhh---c-CCCCchHHHHHHHHHHhhc
Q 044872 312 GYVKVAFGVFGQLEK----CGI-QPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRV---F-SLTPMIEHYGCMVDLLGRS 382 (604)
Q Consensus 312 g~~~~A~~~~~~m~~----~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~-~~~p~~~~~~~li~~~~~~ 382 (604)
|+++.|.+.|+.-.. .|- .....+..+|.+.|.-...++.|+.+|..-..- . ...-....+.+|..+|...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 777777777765432 221 123345556777777777888888887743310 0 1112234455666666666
Q ss_pred CCHHHHHHHHHh
Q 044872 383 GQLDEAHELIKS 394 (604)
Q Consensus 383 g~~~~A~~~~~~ 394 (604)
|..++|+.+.+.
T Consensus 329 g~h~kAl~fae~ 340 (639)
T KOG1130|consen 329 GEHRKALYFAEL 340 (639)
T ss_pred hhHHHHHHHHHH
Confidence 666666665544
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.34 Score=47.25 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=90.2
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcc-cHHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH---H----------
Q 044872 277 YAKCGRMAQACKVFREMKDKDQV-VWNAVVS--GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL---L---------- 340 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l---------- 340 (604)
+.-.|+.++|...-..+.+-|.. .+...+. ++--.++.+.|...|++.+. ..|+...-... .
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh
Confidence 33445555555554444433322 1222222 22335566677777777666 44554332221 1
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH--HHH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-----IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLA--GCR 412 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~--~~~ 412 (604)
+-..+.|++..|.+.|...+ ++.|+ ...|.....+..+.|++++|+.--+.. .+.| ..++.-+.+ ++.
T Consensus 257 N~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l 332 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHL 332 (486)
T ss_pred hhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHH
Confidence 12345788999999998876 45554 455666667788899999999887776 4432 223333333 356
Q ss_pred hcCChHHHHHHHHHHHccCCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~ 433 (604)
..++++.|.+-++++.+...+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 778999999999999876643
No 221
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.06 E-value=1.1 Score=49.83 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=92.8
Q ss_pred CCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHH
Q 044872 180 GNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFME 259 (604)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 259 (604)
++++.|+.-+.++. ...|.-.+..--++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45666666655554 233444444445666677776664 57777776666655421 11
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH--HHH
Q 044872 260 RNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN--TFV 337 (604)
Q Consensus 260 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~ 337 (604)
+.. .++-..-+|.++|+.++|.+.| ...|++.+|+.+..+|.. .-|.. +-.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a~------------------~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKAY------------------KECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHHH------------------HHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 111 1122334688888888887654 456788888887777632 11222 224
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP 396 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 396 (604)
.|..-+...+++-+|-++......+ | .--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 5566667777777777776655432 2 234566777778888887766653
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.84 E-value=0.014 Score=43.51 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-------P-MEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+++.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|++.+++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444555555555555555555443 1 1122 33666677777777777777777777654
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.82 E-value=0.043 Score=46.93 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++|+.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4566777788999999999999999999999999999999999999999999999998864
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.75 E-value=0.11 Score=42.61 Aligned_cols=47 Identities=23% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 044872 364 SLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPNAIVWGALLAG 410 (604)
Q Consensus 364 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~ 410 (604)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455555555555555555555555555443 333334455555543
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.74 E-value=0.11 Score=41.95 Aligned_cols=90 Identities=21% Similarity=0.193 Sum_probs=73.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-CCC---chhHHHHHHHHHhcCC
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALE-PWN---SGNYVLLSNIYSASHK 450 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~ 450 (604)
-+++..|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|..-+++++++. |.. -.+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567889999999999876 3333 66789999999999999999999999999865 332 2467788889999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
-+.|+.=|...-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877664
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=3.7 Score=43.57 Aligned_cols=328 Identities=13% Similarity=0.088 Sum_probs=176.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGD---LSTAKWIHGYVNEAGKGRNVFVATSLVDL 175 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (604)
-..+|.-+...+.+..|+++-..+...-..- ...|.....-+.+..+ -+.+..+-+++... . .+...|..+..-
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHH
Confidence 4456777788888888888877764321221 4555555555554432 22223333222221 2 344567777777
Q ss_pred HHhcCCHHHHHHHHccCCCC--------CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 044872 176 YAKCGNMEKARRVFDQMPEK--------DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGA 247 (604)
Q Consensus 176 y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (604)
...+|+.+-|.++++.=+.. +..-+..-+.-..+.|+.+-...++..|.++- +...|... ..+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~ 587 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRN 587 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHh
Confidence 77889999999888764431 11223344444555666666655555554321 11111111 112
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH--hcC-----CCCcccHHHHHHHHHhCCC---HHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFR--EMK-----DKDQVVWNAVVSGLSMNGY---VKVA 317 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~-----~~~~~~~~~li~~~~~~g~---~~~A 317 (604)
...|..++.+..+..-. ..|-+.|-...+.. +...|. ... +.-..........+++... ..+|
T Consensus 588 ~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~-~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 588 QPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQ-ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred chhhhHHHHHHHHhhch------hhhhhhhhcccchh-hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 23344444444332111 11222222222222 222111 100 1111112222333333322 1111
Q ss_pred -------HHHHHHHHH-CCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 318 -------FGVFGQLEK-CGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 318 -------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
+++.+.+.. .|..-...|.+--+.-+...|.-.+|.++-.+.+ .||-..|-.-+.+++..+++++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLe 735 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELE 735 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHH
Confidence 222233322 2333334455555666677888888888776554 577778888888999999999888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 390 ELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 390 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
++-+... .+.-|.-+..+|.+.|+.++|.+.+-+.-.+ .-...+|.+.|++.+|.+.--+-
T Consensus 736 kfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 736 KFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 8877763 2455667788999999999998887664322 15678899999999988875433
No 227
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.16 Score=47.60 Aligned_cols=96 Identities=19% Similarity=0.043 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC---CHHHHHHHHccCCC---CCcchHHHH
Q 044872 130 DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG---NMEKARRVFDQMPE---KDIVSWSSM 203 (604)
Q Consensus 130 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~l 203 (604)
|...|..+..+|...|+.+.|...|....+.. ++++..+..+..++.... .-.++..+|+++.. .|+.+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 55566666666666666666666666666543 334444444444333221 23456666666644 234455556
Q ss_pred HHHHHhCCCchHHHHHHHHHHHC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 66677777777777777777664
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.60 E-value=1.7 Score=39.42 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=22.0
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~ 386 (604)
..-|.+.|.+..|..-++.+.+.+.-.+. ......++..|.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34455566666666666666554332222 123344445555555554
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.50 E-value=1.9 Score=39.33 Aligned_cols=194 Identities=17% Similarity=0.114 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD-----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLC 341 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 341 (604)
..........+...+++..+...+..... .....+......+...+....+.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34555556666666777766666665432 2334455555566666667777777777766332221 11222222
Q ss_pred -HHhccCcHHHHHHHHHHchhhcCCCC----chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 044872 342 -GCTHAGLVDEGRQFFNSMSRVFSLTP----MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN--AIVWGALLAGCRL 413 (604)
Q Consensus 342 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 413 (604)
++...|+++.+...+..... ..| ....+......+...++.++|...+... ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56777788888887777642 222 2333333444466777888888887776 33333 4567777777888
Q ss_pred cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 414 HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888765556666666666677788888887777653
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.48 E-value=0.25 Score=42.11 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=42.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch----hhcCCCCchHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMS----RVFSLTPMIEH 371 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~----~~~~~~p~~~~ 371 (604)
...++..+...|++++|+.+.+.+.. ..| |...+..++.++...|+..+|.++|+.+. +..|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455666677888888888888777 344 55677777888888888888887777553 24566776554
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=2 Score=39.11 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC-------CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHcc----CCCCchhH
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSMP-------MEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIAL----EPWNSGNY 438 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~ 438 (604)
.|......|.+..++++|-..|.+-. .-|+.. .+.+.|-.+....++..|+..++.-.+. .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566777777777766655431 123332 3445555566667888888888876543 36666677
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 044872 439 VLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~ 459 (604)
..|+..| ..|+.+++.++..
T Consensus 232 enLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHHc
Confidence 7777766 5677777666544
No 232
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.23 Score=48.51 Aligned_cols=94 Identities=16% Similarity=0.081 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
++..+.-.|.+.+++.+|++.-+.. ... +|.-..-.=..+|...|+++.|+..|+++++++|+|-.+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4566777888999999999988877 444 45556666778899999999999999999999999988888888887776
Q ss_pred CChHHH-HHHHHHHhhC
Q 044872 449 HKWNDA-AKIRSMMGDK 464 (604)
Q Consensus 449 g~~~~A-~~~~~~m~~~ 464 (604)
.++.+. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 665554 7888888754
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.34 E-value=0.38 Score=40.09 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=40.0
Q ss_pred HhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 379 LGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
..+.|++++|.+.|+.+ |..|- .-.--.|+.++.+.++++.|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 44567777777777766 33332 234556777788888888888888888888877653
No 234
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.33 E-value=0.19 Score=41.33 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=71.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 345 (604)
|..++.+++-++++.|+++....+++..-.-|+.. -...+. --......|+..+..+++.+|+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 34567778888888888888888877654322211 000111 11223478999999999999999
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL 378 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 378 (604)
.+++..|.++.+...+.|+++-+..+|..|+.-
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999988888889888753
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.23 E-value=0.56 Score=39.08 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHccCCCCc
Q 044872 417 TDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~ 435 (604)
...|...|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777888888888754
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.23 E-value=2.5 Score=38.99 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=74.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhc
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKCGI-QP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRS 382 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 382 (604)
+..-.+.|++++|.+.|+.+..+-. .| ...+...++-++.+.+++++|....++..+.++-.|+.. |...+.++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3344456666666666666665321 11 234455555566666666666666666665555555543 222333332
Q ss_pred CCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch-----------------hHHHHHHH
Q 044872 383 GQLDEAHELIKSMP-MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG-----------------NYVLLSNI 444 (604)
Q Consensus 383 g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 444 (604)
.|..++ ...|. .-...|...++++++.-|++.- .=..+++.
T Consensus 118 --------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 00111 1133445555556666665431 22247788
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|.+.|.|..|..-++.|.+.
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 99999999999999999885
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=95.22 E-value=0.38 Score=48.19 Aligned_cols=64 Identities=8% Similarity=-0.054 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
|......+..+....++.+.|...|+++..++|+.+.++...+....-+|+.++|.+.+++..+
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444444444455555567777777777777776666666666666667777777766666544
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.21 E-value=1.6 Score=36.83 Aligned_cols=88 Identities=13% Similarity=0.155 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 044872 31 FTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEG 110 (604)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 110 (604)
.....++..+...+........++.+++.+ ..+....|.++..|++.. ..+....++. ..+......+++.|.+.+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcC
Confidence 334567777776777888888888888776 357778888888888763 3444555552 233444555677777777
Q ss_pred ChhHHHHHHHHH
Q 044872 111 NLEEAINMFRRL 122 (604)
Q Consensus 111 ~~~~A~~~~~~m 122 (604)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 777777777665
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.16 E-value=0.14 Score=51.18 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=47.6
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 368 MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI----VWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|...+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777888888888888888775 5666643 4777888888888888888888888876
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=95.03 E-value=2 Score=43.20 Aligned_cols=159 Identities=15% Similarity=0.134 Sum_probs=104.6
Q ss_pred ccH--HHHHHHHHhC-----CCHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhc---------cCcHHHHHHHHHHch
Q 044872 299 VVW--NAVVSGLSMN-----GYVKVAFGVFGQLEK-CGIQPNGN-TFVGLLCGCTH---------AGLVDEGRQFFNSMS 360 (604)
Q Consensus 299 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~ 360 (604)
..| ...+.+.... ...+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5555554441 135578888998872 23667653 34333332221 234455666666665
Q ss_pred hhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 361 RVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 361 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.+.| |......+..++.-.|+++.|..+|++. ...||.. +|......+.-.|+.++|.+.+++.++++|....+
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 3444 4555666667777788899999999998 6677654 77766777788999999999999999999986544
Q ss_pred HH--HHHHHHHhcCChHHHHHHHHHH
Q 044872 438 YV--LLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 438 ~~--~l~~~~~~~g~~~~A~~~~~~m 461 (604)
-. ..+++|... ..++|.+++-+-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 33 344466655 467777776543
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=0.19 Score=46.48 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=48.8
Q ss_pred hcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC---CchhHHHHHHHHHhcCC
Q 044872 381 RSGQLDEAHELIKSM-------PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW---NSGNYVLLSNIYSASHK 450 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~ 450 (604)
+.|++.+|..-|... ...||..-| |..++...|+++.|...|..+.+-.|+ -|.++.-|+.+..+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 445566665555544 122333333 556666677777777777666654443 34566666777777777
Q ss_pred hHHHHHHHHHHhhC
Q 044872 451 WNDAAKIRSMMGDK 464 (604)
Q Consensus 451 ~~~A~~~~~~m~~~ 464 (604)
.++|..+++++.++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766654
No 242
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.86 E-value=5.7 Score=41.18 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=124.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
+...|+.-++.-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567788888888999999999999988754 2344555555555558888888777766553232222222222233
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCch-HHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMI-EHYGCMVDLLGRSGQLDEAH---ELIKSM-PMEPNAIVWGALLA-----GCR 412 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~-----~~~ 412 (604)
+-..|+++.|..+++.+.+. . |+. ..-.--+....+.|..+.+. +++... +.+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56688999999999999875 3 553 33334456778899999888 555554 22223333333222 245
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
..++.+.|..++.++.+..|++...|..+.+.....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 66899999999999999999999999999988876663
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.68 E-value=0.31 Score=46.60 Aligned_cols=126 Identities=9% Similarity=0.052 Sum_probs=74.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCC--CC--chHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSL--TP--MIEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPNAIVW 404 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~ 404 (604)
..++..|+...+.++++.+.|+...+-..- +| ...++..|...|++..++++|.-+..+. ++..=..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334556666677777888777765532111 12 1346777777888888877766554433 222111122
Q ss_pred H-----HHHHHHHhcCChHHHHHHHHHHHcc--CCCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 405 G-----ALLAGCRLHKKTDLAEHVLNQLIAL--EPWNS----GNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 405 ~-----~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
. -|.-+++..|.+..|.+..++..++ ...|. .....++++|...|+.+.|..-++..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2 2344677788888888877777543 22232 34446788888888877777666544
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.68 E-value=0.68 Score=47.38 Aligned_cols=153 Identities=13% Similarity=0.178 Sum_probs=91.2
Q ss_pred hcCCchHHHHHHH--HHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 044872 7 SNDCFQHAIEFYN--SMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADA 84 (604)
Q Consensus 7 ~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 84 (604)
-+|+++++.+... ++.. .+ +..-.+.++.-+-+.|-.+.|+++-. |+ ..-.+...++|+++.|
T Consensus 273 ~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHHH
Confidence 3556666555443 1111 11 13336677777777777777776632 22 2234566688888888
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 044872 85 LKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR 164 (604)
Q Consensus 85 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 164 (604)
.++-++.. +...|..|.....++|+++-|.+.|.+... |..++-.+...|+.+.-.++.......|
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~--- 403 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG--- 403 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc---
Confidence 88877665 566888888888888998888888887643 5556666777788777777777766655
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
-+|.-..++.-.|++++..+++.+
T Consensus 404 ---~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ---DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 133444445555777766666544
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=2 Score=40.33 Aligned_cols=121 Identities=11% Similarity=0.081 Sum_probs=81.1
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGA---LLAGCRLHKKTD 418 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~~~~~ 418 (604)
.....|++.++...|...... .+-+......|...|...|+.++|..++..+|..-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677888888888777643 122345566677888889999999999998865543333333 222233333333
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 419 LAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+... +++-...+|+|...-..++..|...|+.++|.+.+-.+..++
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2222 233345689999999999999999999999999887776654
No 246
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.40 E-value=0.31 Score=45.01 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=81.1
Q ss_pred HHHHHHHHhcC--CCCcccHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------
Q 044872 284 AQACKVFREMK--DKDQVVWNAVVSGLSMN-----GYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAG--------- 347 (604)
Q Consensus 284 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 347 (604)
-..++.|.... ++|-.+|-+++..+..+ +..+-....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456777776 67888899988888654 567777778899999999999999999999876633
Q ss_pred -------cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCH
Q 044872 348 -------LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 348 -------~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 385 (604)
.-+=++.++++|.. +|+-||-++-..|++++++.+-.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 22447789999985 59999999999999999998864
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.37 E-value=0.082 Score=31.80 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35777777788888888888888888888775
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.20 E-value=3 Score=35.13 Aligned_cols=43 Identities=28% Similarity=0.229 Sum_probs=25.0
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
.++..+...+.......+++.+.+.+. .++..++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444445555566666666655542 4566677777777664
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=4.5 Score=38.11 Aligned_cols=153 Identities=15% Similarity=0.103 Sum_probs=99.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC
Q 044872 306 SGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 306 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 384 (604)
......|++.+|..+|+..... .| +...-..+..++...|+.+.|..++..+.... -.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhc
Confidence 3456788888899988888773 33 23455667778888999999999998776421 11111222334566666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCCchhHHHHHHHHHhcCChHH-HHHHHHH
Q 044872 385 LDEAHELIKSMPMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALE--PWNSGNYVLLSNIYSASHKWND-AAKIRSM 460 (604)
Q Consensus 385 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 460 (604)
..+..++-.+....| |...--.+...+...|+.+.|.+.+-.++..+ -+|...-..|..++.-.|.-+. +...+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 666666666664456 44555667777888899999888877777543 4456677777777777774443 3344444
Q ss_pred H
Q 044872 461 M 461 (604)
Q Consensus 461 m 461 (604)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.14 E-value=0.47 Score=43.95 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=52.6
Q ss_pred ccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN-AIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~ 418 (604)
..|++..|.+.|...++.|.-.+ ....+--|...+...|++++|..+|..+ |..|- +..+--|.......|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 34456666666655554321111 1122333556666666666666666555 33332 235555666667777888
Q ss_pred HHHHHHHHHHccCCCCchh
Q 044872 419 LAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~ 437 (604)
.|...|+++.+..|+.+.+
T Consensus 233 ~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 233 EACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHCCCCHHH
Confidence 8888888887777766433
No 251
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.04 E-value=3.2 Score=42.04 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=69.8
Q ss_pred HHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 044872 337 VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMP-M-EPNA--IVWGALLAGCR 412 (604)
Q Consensus 337 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~ll~~~~ 412 (604)
..+..++-+.|..++|.+.|.++.+.+...........|+..|...+++.++..++.+.. + -|.. ..|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778899999999999998654333344566778899999999999999998873 2 2333 36666655555
Q ss_pred hcCCh---------------HHHHHHHHHHHccCCCCc
Q 044872 413 LHKKT---------------DLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 413 ~~~~~---------------~~a~~~~~~~~~~~p~~~ 435 (604)
..++. ..|.+++.++.+.+|.-+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 44431 235678888888888654
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.03 E-value=0.14 Score=30.62 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777777754
No 253
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.03 E-value=2.9 Score=43.42 Aligned_cols=158 Identities=12% Similarity=0.114 Sum_probs=101.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCcHHHHHHHHHHchhhcCCCCchHHH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKCG-IQPNG-----NTFVGLLCGCT----HAGLVDEGRQFFNSMSRVFSLTPMIEHY 372 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 372 (604)
.+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 34444445566666666666654422 11111 12333333322 245778899999988865 4666555
Q ss_pred HHHH-HHHhhcCCHHHHHHHHHhCC-CC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH-HHHH
Q 044872 373 GCMV-DLLGRSGQLDEAHELIKSMP-ME---P--NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL-LSNI 444 (604)
Q Consensus 373 ~~li-~~~~~~g~~~~A~~~~~~~~-~~---p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~ 444 (604)
...- ..+...|++++|.+.|++.- .+ | ....+--+...+....++++|...+.++.+.+..+...|.. .+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4433 56677899999999999751 11 1 22334445566778899999999999999877766555554 4566
Q ss_pred HHhcCCh-------HHHHHHHHHHhh
Q 044872 445 YSASHKW-------NDAAKIRSMMGD 463 (604)
Q Consensus 445 ~~~~g~~-------~~A~~~~~~m~~ 463 (604)
+...|+. ++|.+++.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6788888 888888887765
No 254
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.98 E-value=2.9 Score=37.37 Aligned_cols=161 Identities=14% Similarity=0.151 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+-|...-+.-.-+|-...|-.+
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl-- 175 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL-- 175 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH--
Confidence 4566666666667777777777777666 33422 222222223445566666665544433221222222222211
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------chhHHHHHHHHHhcCC
Q 044872 378 LLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-------SGNYVLLSNIYSASHK 450 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 450 (604)
-.+.-++.+|..-+.+--...|..-|..-|-.+.--.-.+ +.+++++.+...++ ..+|.-|+.-|...|+
T Consensus 176 -~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 176 -NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1233355555543332211234455655554433221111 23344444322222 3688999999999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
.++|..+|+.....++
T Consensus 253 ~~~A~~LfKLaiannV 268 (297)
T COG4785 253 LDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999887544
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=11 Score=40.74 Aligned_cols=52 Identities=8% Similarity=0.115 Sum_probs=31.3
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 376 VDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+..+....+.+.+..+.+..+.. ++..|-.++..+.+.+..+.-.+...+++
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 33445556666666666666422 66677777777777776555555555444
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.90 E-value=4 Score=40.42 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCC---Cc----chHHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPEK---DI----VSWSSMIQGYAS---NGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
.|+-.|-...+++...++.+.+... ++ ..---..-++-+ .|+.++|++++..+....-.++..|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455678888888888888887652 11 111123345555 7888888888888666555667777766555
Q ss_pred HH
Q 044872 241 AC 242 (604)
Q Consensus 241 ~~ 242 (604)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.80 E-value=7.9 Score=38.64 Aligned_cols=127 Identities=10% Similarity=0.085 Sum_probs=84.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcC-CCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFS-LTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVW-GALLAGC 411 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~ 411 (604)
.|...+++..+..-++.|+.+|-++.+. + +.+++..+++++.-++ .|+..-|..+|+-- ..-||...| +-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555666667777788888888888765 5 5677888888887554 57777788888754 333555433 4455556
Q ss_pred HhcCChHHHHHHHHHHHccCC--CCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 412 RLHKKTDLAEHVLNQLIALEP--WNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
...++-+.|..+|+..++.-. .-...|..+++--+.-|+...|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 677888888888886553211 1234677777777777777777766666654
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.79 E-value=0.46 Score=43.88 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=60.1
Q ss_pred HHHHHhccCC--CCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC----------
Q 044872 83 DALKVFDDIP--DKNVVSWTAIISGYINE-----GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLG---------- 145 (604)
Q Consensus 83 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 145 (604)
..++.|...+ ++|-.+|-+.+..+... +..+=--..++.|.+.|+.-|..+|..+|..+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 46777777777776543 445555556777888888888888888887654321
Q ss_pred ------ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 146 ------DLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180 (604)
Q Consensus 146 ------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (604)
+-+-+..++++|...|+-||-.+-..|++++++.+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 12234555555555565555555555555555544
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.79 E-value=5.1 Score=36.38 Aligned_cols=193 Identities=15% Similarity=0.072 Sum_probs=118.2
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--Cc-ccHHHHHH-HHHhC
Q 044872 237 GVLSACASLGALELGVWASSFMERN-EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK--DQ-VVWNAVVS-GLSMN 311 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~li~-~~~~~ 311 (604)
.....+...+.+..+...+...... ........+..+...+...++...+...+...... +. ..+..... .+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHc
Confidence 3333444444444444444333321 12223334444455555556666666666665542 11 22222333 67788
Q ss_pred CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHH
Q 044872 312 GYVKVAFGVFGQLEKCGIQP----NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 312 g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~ 386 (604)
|+++.|...+.+... ..| ....+......+...++.+.+...+...... ... ....+..+...+...++++
T Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 144 GDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred CCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHH
Confidence 888888888888855 333 2234444444466778888998888888742 222 3566777778888888999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 387 EAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 387 ~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
+|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999988877 44454 445555555555777899999999999988885
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.66 E-value=3.2 Score=42.59 Aligned_cols=155 Identities=16% Similarity=0.149 Sum_probs=83.7
Q ss_pred HHhCCChhHHHHHHH--HHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 044872 106 YINEGNLEEAINMFR--RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNME 183 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~--~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 183 (604)
..-.++++++.++.+ ++.. .+ | ..-...+++.+-+.|-.+.|.++-. |+. .-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 344566666655554 1111 11 1 3335566666666676666666543 221 2344557778888
Q ss_pred HHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC
Q 044872 184 KARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEF 263 (604)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (604)
.|.++-++.. +...|..|.....++|+.+-|.+.|++... +..++-.+...|+.+.-.++.......|-
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8888776655 455788888888888888888887776532 44455556666666666666655555441
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
+|....++.-.|+.++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333444455666666665544
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=2.3 Score=40.53 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=81.2
Q ss_pred hcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHH--HHHHHHhccCcHHH
Q 044872 279 KCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG--NTFV--GLLCGCTHAGLVDE 351 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~--~ll~a~~~~g~~~~ 351 (604)
..|+..+|-..++++.+ .|..+|+--=.+|.-.|+.+.-...+++.... ..||. .+|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666666666666654 35666666666777777777766666666542 12332 2222 22234455677777
Q ss_pred HHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHH
Q 044872 352 GRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN-------AIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
|++.-++..+ +.| |.-.-.++...+.-.|+..++.+++.+-...-+ ..-|..- -.+...+.++.|+++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A-l~~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA-LFHIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH-HhhhcccchhHHHHH
Confidence 7766665552 233 333444555666667777777777766521111 0111111 123344677777777
Q ss_pred HHHHH--ccCCCCc
Q 044872 424 LNQLI--ALEPWNS 435 (604)
Q Consensus 424 ~~~~~--~~~p~~~ 435 (604)
|++-+ +++.+|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 76533 3444444
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.40 E-value=3.3 Score=41.92 Aligned_cols=147 Identities=14% Similarity=0.071 Sum_probs=78.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHE 390 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 390 (604)
..+...-+++-++..+ +.||-.+.-.++ +-.....+.++.++|++..+. + ...+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hhh
Confidence 3344455555555555 556654433333 223345577777777766542 1 0000000 00000111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 044872 391 LIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW--NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQK 468 (604)
Q Consensus 391 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 468 (604)
.+..-...|-..+=..|...+++.|+.++|.+.++++++..|. +......|++.+...+.+.++..++.+-.+....+
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1111111222333345666677888888888888888876654 34567778888888888888888888765443433
Q ss_pred C
Q 044872 469 I 469 (604)
Q Consensus 469 ~ 469 (604)
.
T Consensus 329 S 329 (539)
T PF04184_consen 329 S 329 (539)
T ss_pred h
Confidence 3
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.21 E-value=6.9 Score=36.16 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=106.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---cc---cHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCH--HH
Q 044872 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD---QV---VWNAVVSGLSMNGYVKVAFGVFGQLEKC-GIQPNG--NT 335 (604)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t 335 (604)
|-...|+.-+. -.+.|++++|.+.|+.+..+. +. +--.++-++-+.+++++|+..+++.... +-.||. ..
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 33445554443 456899999999999998642 22 2333455777899999999999998874 233333 34
Q ss_pred HHHHHHHHhcc----CcHH---HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HH
Q 044872 336 FVGLLCGCTHA----GLVD---EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVW--GA 406 (604)
Q Consensus 336 ~~~ll~a~~~~----g~~~---~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ 406 (604)
|...+.-+... .+.. +|..-|+.++.++ |+.. -..+|..-+..+. |.... ..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~ 172 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMA 172 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHH
Confidence 44444433221 2222 3333333334332 2211 1111111111110 11111 13
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNS---GNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+..-|.+.|.+..|..-++.+++.-|+.+ .++..+..+|...|-.++|.+.-+-+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 44557899999999999999998766544 46667888899999999999988777553
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.98 E-value=1.5 Score=45.54 Aligned_cols=174 Identities=17% Similarity=0.169 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC-CCc---------ccHHHHHHHHHh----CCC
Q 044872 46 FQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD-KNV---------VSWTAIISGYIN----EGN 111 (604)
Q Consensus 46 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~---------~~~~~li~~~~~----~g~ 111 (604)
+..+.-+|..++.. ++| ....+++..+=.|+-+.+++.+....+ .++ ..|+.++..+.- ...
T Consensus 173 v~~G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 34455666666654 333 234556666666777777777765433 222 235555554443 345
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHH-HHHhcCCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCHHHHHH
Q 044872 112 LEEAINMFRRLLHRGLKPDSFSIVRVL-TACTQLGDLSTAKWIHGYVNEAG---KGRNVFVATSLVDLYAKCGNMEKARR 187 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~~ 187 (604)
.+.|.+++..+... -|+...|...- +.+...|+++.|.+.++.+.... .+.....+--+.-.+.-..++++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 67889999998875 56766554333 45577899999999998765321 12233445557778889999999999
Q ss_pred HHccCCCCCcc---hHHHH-HHHHHhCCCc-------hHHHHHHHHHHH
Q 044872 188 VFDQMPEKDIV---SWSSM-IQGYASNGFP-------KEALDMFYNMQR 225 (604)
Q Consensus 188 ~~~~~~~~~~~---~~~~l-i~~~~~~g~~-------~~A~~~~~~m~~ 225 (604)
.|..+.+.+.. .|.-+ ..++...|+. ++|.++|.+...
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999874432 23322 3445566777 888888888654
No 265
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.77 E-value=0.9 Score=36.83 Aligned_cols=86 Identities=13% Similarity=0.001 Sum_probs=41.8
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC----CCcc---cHHHHHHHHHhCCCh
Q 044872 40 CAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD----KNVV---SWTAIISGYINEGNL 112 (604)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~---~~~~li~~~~~~g~~ 112 (604)
++..|+++.|.+.|.+.+..- +...++||.-...|.-.|+.++|+.=+++..+ +... +|.--...|-..|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555555555555555432 23445555555555555555555554444322 1111 122222334455666
Q ss_pred hHHHHHHHHHHHCC
Q 044872 113 EEAINMFRRLLHRG 126 (604)
Q Consensus 113 ~~A~~~~~~m~~~g 126 (604)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.45 E-value=0.5 Score=41.38 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=68.2
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 378 LLGRSGQLDEAHELIKSM----PMEP---NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~----~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
-+.+.|++++|..-|... |..+ ..+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777776655 2111 233455555667889999999999999999999888888888899999999
Q ss_pred hHHHHHHHHHHhhCCC
Q 044872 451 WNDAAKIRSMMGDKGI 466 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~ 466 (604)
+++|.+=++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999987543
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.11 E-value=4.4 Score=35.05 Aligned_cols=136 Identities=16% Similarity=0.192 Sum_probs=86.9
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHhccCCC
Q 044872 15 IEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDE-FVKTSLLNLYVHCGYLADALKVFDDIPD 93 (604)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~ 93 (604)
++....+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+|. .+...|++.- +....+.++=-.|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHH
Confidence 4566667778899999999999999999998754444 4455544444 4444444332 222333333333333
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 044872 94 KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG 161 (604)
Q Consensus 94 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g 161 (604)
+=...+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...--.++....+.+
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22235778888999999999999998875322 22334556777777777777666666665543
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.10 E-value=0.28 Score=30.02 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778899999999999999988854
No 269
>PRK15331 chaperone protein SicA; Provisional
Probab=91.86 E-value=0.77 Score=39.25 Aligned_cols=84 Identities=5% Similarity=-0.098 Sum_probs=61.4
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHH
Q 044872 40 CAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDI---PDKNVVSWTAIISGYINEGNLEEAI 116 (604)
Q Consensus 40 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~ 116 (604)
+...|++++|..+|..+...++. +..-+..|...+-..+++++|...|... ...|....--....|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 44678888888888888776533 4555677777777788888888887642 2345555666677888888888888
Q ss_pred HHHHHHHH
Q 044872 117 NMFRRLLH 124 (604)
Q Consensus 117 ~~~~~m~~ 124 (604)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 88888776
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.63 E-value=6.6 Score=33.54 Aligned_cols=89 Identities=17% Similarity=0.121 Sum_probs=52.4
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCchH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPMIE-HYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~ 418 (604)
..-...++.+++..++..+. -+.|... .-..-...+.+.|++.+|..+|+++ .-.|....-.+|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 33445667777777777776 4455532 2223345567888888888888888 33355555566666665444333
Q ss_pred HHHHHHHHHHccCC
Q 044872 419 LAEHVLNQLIALEP 432 (604)
Q Consensus 419 ~a~~~~~~~~~~~p 432 (604)
.=....+++++..+
T Consensus 95 ~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 95 SWRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHHhcCC
Confidence 33344444555444
No 271
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.42 E-value=24 Score=38.24 Aligned_cols=47 Identities=17% Similarity=0.106 Sum_probs=28.5
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQL 144 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 144 (604)
..--++|-.+.|.|++++|.++....... .......|...+..+...
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 33345667777888888888877554432 344555677777777654
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.39 E-value=16 Score=36.26 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=75.0
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc--hHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP---NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM--IEH 371 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~ 371 (604)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567778888888888888888888877643211 2223333344455667777887777766642 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHEL-IKSMPMEPNAIVWGALLAGCRLH------KKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
...+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111000000 00000000 00000000011222222223333 788889999999999999887777777766
Q ss_pred HH
Q 044872 445 YS 446 (604)
Q Consensus 445 ~~ 446 (604)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 64
No 273
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.37 E-value=25 Score=38.28 Aligned_cols=115 Identities=13% Similarity=0.059 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHH
Q 044872 311 NGYVKVAFGVFGQLEKC-GIQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 387 (604)
..+.+.|..++.+.... +..+... ....+.......+...++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 34457777777776443 2333322 2223322222222244555555554321 1233333333444447778887
Q ss_pred HHHHHHhCCCC-CCHHHH-HHHHHHHHhcCChHHHHHHHHHHH
Q 044872 388 AHELIKSMPME-PNAIVW-GALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 388 A~~~~~~~~~~-p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+...+..|+.. .+..-| -=+..+....|+.+.|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777777321 111122 223445555788888888877764
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.19 E-value=15 Score=35.32 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhcCCHH---HHHHHHccCCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHHHHC
Q 044872 167 FVATSLVDLYAKCGNME---KARRVFDQMPE--KD-IVSWSSMIQGYASNGFPKEALDMFYNMQRE 226 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~---~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 226 (604)
.+...|+.+|...+..+ +|.++.+.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 45666777777766544 34444444432 33 334444455555577777777777777765
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=2.4 Score=40.42 Aligned_cols=159 Identities=11% Similarity=-0.053 Sum_probs=115.0
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH----HHHhhcCCH
Q 044872 310 MNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV----DLLGRSGQL 385 (604)
Q Consensus 310 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li----~~~~~~g~~ 385 (604)
-+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++.+.. ...|+...|..+= -++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999998874 445667777777899999999999999998885 3456665554443 345589999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CchhHHHHHHHHHhcCChHHHHHHHH
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW----NSGNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
++|++.-++. .++| |.-.-.++...+...|+..++.+...+-...=.. -...|-..+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 6665 4445666777778889999888877654321111 12455567777888899999999999
Q ss_pred HHhhCCCccCCc
Q 044872 460 MMGDKGIQKIRG 471 (604)
Q Consensus 460 ~m~~~~~~~~~~ 471 (604)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 776555555544
No 276
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.93 E-value=22 Score=37.02 Aligned_cols=120 Identities=13% Similarity=-0.036 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-----PMEPNAIVWGAL 407 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l 407 (604)
..+|...+.--...|+.+...-.|+...- .+.--.+.|--.+.-....|+.+-|..++... +..|......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677777777777777777777776542 11222344444555555557777777666554 222333322222
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 408 LAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 408 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
-+-..|+...|..+++.+.+--|+....-..-+++..+.|+.+.+..
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 24456788888888888876557766666666777788888888874
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.92 E-value=0.4 Score=28.64 Aligned_cols=31 Identities=13% Similarity=0.009 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
+|..+...+...|+++.|...|++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556666677777777777777777777763
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.86 E-value=9.6 Score=36.95 Aligned_cols=126 Identities=13% Similarity=0.010 Sum_probs=65.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhccCcHHHHHHHHHHc---hhhcCCCCchHHHHHH
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGI---QP--NGNTFVGLLCGCTHAGLVDEGRQFFNSM---SRVFSLTPMIEHYGCM 375 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~l 375 (604)
|..++.-.+.++++++.|+...+--- .| .-..+.++-+.|....++++|.-+.... .+.+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33344444556666666655543110 11 1235556666666666666665544422 2233333322233333
Q ss_pred H-----HHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 376 V-----DLLGRSGQLDEAHELIKSM-------PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 376 i-----~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+ -+|...|++.+|.+.-++. +..| -......+...|+..|+.|.|..-|+++..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 3455566666666555543 3222 223455667778888888888877777654
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.58 E-value=0.44 Score=29.12 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+|..|...|...|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888899999888888654
No 280
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.50 E-value=21 Score=35.88 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHH-HHHH
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCG-IQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHY-GCMV 376 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li 376 (604)
..|-..+..-.+..-.+.|..+|-+..+.| +.++...+++++.-+ ..|+...|..+|+.=...+ ||...| .-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 456666776667777889999999999988 567778888888755 4688899999999766443 443333 4566
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 377 DLLGRSGQLDEAHELIKSM--PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
..+.+.++-+.|..+|+.. .+..+ ...|..+|.--...|+...+..+-+++.++-|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788999999999999966 23333 4589999999999999999999999999988875
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.25 E-value=15 Score=36.56 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC----CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP----WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
...+|..+...+++.|+++.|...+.++.+.++ ..+.....-+......|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 455899999999999999999999999987652 2456777788999999999999999988877333
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.23 E-value=38 Score=38.50 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=72.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHH
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDE 351 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 351 (604)
-.++.--+.|.+.+|..++..=.+.-...|.+...-+.+.+.+++|.-.|+..-+ ..-.+.+|...|++.+
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~ 983 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWRE 983 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHH
Confidence 3344445566667776665433333333444444455556777777666655322 1234667888899999
Q ss_pred HHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 044872 352 GRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEP 399 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 399 (604)
+..+..++.. +-.--..+-..|+.-+..+++.-+|.++..+....|
T Consensus 984 ~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 984 ALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 9998887753 222223334678888889999999999988874343
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.98 E-value=31 Score=37.19 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHH
Q 044872 202 SMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
.|+..|...+++..|+.++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 36677777777777777765543
No 284
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.87 E-value=9.8 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.194 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
.+.-+..+...|+-+.--+++..+.+ +-+|++..+..+..||.+.|+..++..++.++-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44445666666666666666666654 2345666666666777777777777777766666653
No 285
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.68 E-value=1.8 Score=40.91 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++..++..+...|+.+.+...++++++.+|-+...|..+..+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666667777777777777777777777777777888888888888888877777765
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.40 E-value=1.7 Score=37.08 Aligned_cols=51 Identities=20% Similarity=0.209 Sum_probs=24.8
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..++.+.++.++..+.-+.|..+..-..-+.++...|+|++|.++++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344444455555444444554444444444455555555555555554433
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.38 E-value=8 Score=37.31 Aligned_cols=60 Identities=8% Similarity=0.024 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCc--hHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 214 KEALDMFYNMQRENLKPEY--YTMVGVLSACASLGA--LELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 214 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
+.+..+|+.+...|+..+. ...+.++..+..... ...+..+++.+.+.|+.+....|..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 4456667777776765532 233334433332222 34666777777777777766665544
No 288
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.28 E-value=12 Score=32.50 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=71.1
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhc-CCHHHHHHHHccCC
Q 044872 116 INMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVF-VATSLVDLYAKC-GNMEKARRVFDQMP 193 (604)
Q Consensus 116 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~-g~~~~A~~~~~~~~ 193 (604)
++.++.+.+.+++|+...+..++..+.+.|.+....+ +++.++-+|.. +-..|++.-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455556667777777777777777777776554333 33344333333 222222221110 01233344444433
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 044872 194 EKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMER 260 (604)
Q Consensus 194 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 260 (604)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...-..++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556677788888888888887664221 122234456666666665555555555544
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.04 E-value=1.6 Score=36.46 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=38.9
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
..++.++++.+++.+.-+.|+.+..-..-+.++...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 46677777777777777777777777777777777777777777777776654
No 290
>PRK09687 putative lyase; Provisional
Probab=89.02 E-value=22 Score=34.09 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044872 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGC 343 (604)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 343 (604)
++..+-...+.++++.|+.+....+.+.+..++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 355555666666777776544444444444333 233556667777764 677777777662 34665555555444
No 291
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.95 E-value=1.1 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=19.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
+|..+...|.+.|++++|.++|++..+ ..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 455566666666677777777766666 34543
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.93 E-value=22 Score=34.04 Aligned_cols=17 Identities=18% Similarity=-0.122 Sum_probs=10.4
Q ss_pred HHhcCChHHHHHHHHHH
Q 044872 411 CRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~ 427 (604)
+.+.++++.|...|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45566666666666643
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.85 E-value=2.8 Score=39.60 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEK-----CGIQPNGNTFVG 338 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 338 (604)
..++..++..+..+|+.+.+...++++... |...|..++.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 446677888899999999999999888753 567899999999999999999999988765 467776655444
Q ss_pred HHHH
Q 044872 339 LLCG 342 (604)
Q Consensus 339 ll~a 342 (604)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 294
>PRK09687 putative lyase; Provisional
Probab=88.69 E-value=23 Score=33.93 Aligned_cols=80 Identities=13% Similarity=-0.021 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNG-YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT 344 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 344 (604)
+..+-...+.++++.|+.+....+...+.++|...-...+.++.+.+ ....+...+..+.. .+|...-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44444555555555555443333333333444433333333333332 12334444444432 234444444444555
Q ss_pred ccCc
Q 044872 345 HAGL 348 (604)
Q Consensus 345 ~~g~ 348 (604)
+.|+
T Consensus 218 ~~~~ 221 (280)
T PRK09687 218 LRKD 221 (280)
T ss_pred ccCC
Confidence 5444
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.36 E-value=11 Score=36.27 Aligned_cols=62 Identities=11% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCc--HHHHHHHHHHchhhcCCCCchHHHHHHH
Q 044872 314 VKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCTHAGL--VDEGRQFFNSMSRVFSLTPMIEHYGCMV 376 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li 376 (604)
.+.+..+|+.+...|+..+. .....++..+..... +.++.++++.+.+. ++++...+|..+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 34567778888887776643 334444443333222 44777788888765 8887777766543
No 296
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.87 E-value=79 Score=39.08 Aligned_cols=279 Identities=12% Similarity=0.079 Sum_probs=140.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHcc-CCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccC
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQ-MPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLG 246 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~ 246 (604)
+-.+...|+.-+++|...-+... ...++ ...-|.-....|++..|...|+.+.+. .|+ ..+++.++......+
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhccc
Confidence 34444467777766666555542 22222 223344456667777777777777664 333 556666666655566
Q ss_pred chHHHHHHHHHHHHcCCCCchhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH-HH-HHHhCC--CHHHHHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVL-GTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAV-VS-GLSMNG--YVKVAFGVF 321 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-i~-~~~~~g--~~~~A~~~~ 321 (604)
.++...-..+-..... .+...- ++.=+.+-.+.++++..+.... +++...|.+. +. ...+.. +.-.-.++.
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 6555544333332221 112222 2222334466677776666555 5666667665 22 222211 111111233
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH----------HHchhhcCCCCchH------HHHHHHHHHhhcCCH
Q 044872 322 GQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFF----------NSMSRVFSLTPMIE------HYGCMVDLLGRSGQL 385 (604)
Q Consensus 322 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~----------~~~~~~~~~~p~~~------~~~~li~~~~~~g~~ 385 (604)
+.+++.-+.| +.+|+..|.+..+.++. .......+..++.. -|..-+..-....+.
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~ 1645 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRI 1645 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHH
Confidence 3333321111 11222222211111111 11111112333221 121111111111111
Q ss_pred HHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 386 DEAHELIKSM----PMEP-----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 386 ~~A~~~~~~~----~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.+-.--+++. ...| -..+|-...+.++..|.++.|....-.+.+..+ +..+.-.+......|+-..|..
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHH
Confidence 2111111111 1122 234899999999999999999998888777664 4688899999999999999999
Q ss_pred HHHHHhhCCC
Q 044872 457 IRSMMGDKGI 466 (604)
Q Consensus 457 ~~~~m~~~~~ 466 (604)
++++..+...
T Consensus 1724 ~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1724 VLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhc
Confidence 9999886543
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.83 E-value=22 Score=32.67 Aligned_cols=46 Identities=20% Similarity=0.375 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 167 FVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
..++--..+|..+|..+.|-..+++.-+ ...+-++++|+++|++-.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 3455556667777766665555544211 223345566666665543
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.75 E-value=12 Score=32.90 Aligned_cols=15 Identities=27% Similarity=0.286 Sum_probs=9.2
Q ss_pred hcCCHHHHHHHHHhC
Q 044872 381 RSGQLDEAHELIKSM 395 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~ 395 (604)
..+++.+|.+.|-..
T Consensus 125 ~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 125 AQRDFKEAAELFLDS 139 (177)
T ss_pred HhchHHHHHHHHHcc
Confidence 356666666666555
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.33 E-value=14 Score=31.95 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=58.7
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH-HHHHH--HHHHhhcCC
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE-HYGCM--VDLLGRSGQ 384 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g~ 384 (604)
++.+..++|+.-|.++.+.|...=.+ ............|+-..|...|+++-.. .-.|.+. -..-| .-++...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 34455555555555555544322111 1111222344556666666666665543 1122211 11111 123445677
Q ss_pred HHHHHHHHHhCC--CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 385 LDEAHELIKSMP--MEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 385 ~~~A~~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+++.....+.+. -.|- ...-.+|.-+-.+.|++..|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777666666662 1221 22334555566677777777777777665
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.12 E-value=1 Score=26.86 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=20.5
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 466667777777777777777777766 4443
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.86 E-value=4.9 Score=31.13 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 316 VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 316 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 566677777777889999999999999999999999999999998764433 336766654
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.74 E-value=5.1 Score=30.70 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44567777788888889999999999999999999999999999988754332 4445666553
No 303
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.48 E-value=2.5 Score=40.38 Aligned_cols=50 Identities=8% Similarity=0.035 Sum_probs=32.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHH
Q 044872 306 SGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 306 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
.-|.++|.+++|+..|..... +.| |.+++..-..||.+...+..|..-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 456677777777777776665 556 66676666666666666655544333
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.45 E-value=0.9 Score=38.49 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=56.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCC----------CcccHHHHHHH
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDK----------NVVSWTAIISG 105 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~ 105 (604)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++....- ....|...+-.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHH
Confidence 34455555556666666666665554455666666666666666656666666533221 11123333334
Q ss_pred HHhCCChhHHHHHHHHHHHC-------CCCCChhhHHHHHHHHhcCCCh
Q 044872 106 YINEGNLEEAINMFRRLLHR-------GLKPDSFSIVRVLTACTQLGDL 147 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~ 147 (604)
|.+.|++++|++++..+... .-.+|...|..+++.|...+..
T Consensus 93 y~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 93 YSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 44444444444432111110 0124677888888888766543
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.27 E-value=13 Score=32.09 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=52.7
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH-H--HHHHHhcCCH
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSF-SIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS-L--VDLYAKCGNM 182 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-l--i~~y~~~g~~ 182 (604)
++.+..++|+.-|..+.+.|...=.. ....+....+..|+...|...|.++-+....|-+.--.+ | .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34455555555555555443321000 001111123344555555555555544332222210000 0 1123445556
Q ss_pred HHHHHHHccCCC-CCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 044872 183 EKARRVFDQMPE-KDI---VSWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230 (604)
Q Consensus 183 ~~A~~~~~~~~~-~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 230 (604)
+......+.+.. .++ ..-.+|.-+-.+.|++.+|.+.|..+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 555555554432 121 123344455556666666666666665543333
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.91 E-value=1.4 Score=26.10 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998763
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.62 E-value=11 Score=33.28 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCCC------cccHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHH
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKDKD------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC---GIQPNGNTFVG 338 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ 338 (604)
..+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678889999999999999999987643 235666777778889999888888776553 22222222222
Q ss_pred HHH--HHhccCcHHHHHHHHHHchhh
Q 044872 339 LLC--GCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 339 ll~--a~~~~g~~~~a~~~~~~~~~~ 362 (604)
+.. ++...+++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222 244578899988888776643
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.09 E-value=1.8 Score=41.23 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKT 417 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 417 (604)
+-|.++|.+++|+..|.... .+.| +..++..-..+|.+..++..|..=.+.. .+.. -...|..-..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 46889999999999999877 4566 7777777788899999988777655544 2211 123566666666678899
Q ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 044872 418 DLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIR 458 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 458 (604)
.+|.+-++..++++|++.. |-..|++.....++.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHh
Confidence 9999999999999998644 334444444455544443
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.93 E-value=65 Score=35.27 Aligned_cols=52 Identities=8% Similarity=0.060 Sum_probs=37.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
++..+.+..+.+.+..+.+.. +|.+|..|..+.+.+++.+..++-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 555677888888888777664 4557788999999999988666655554444
No 310
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.70 E-value=6.7 Score=26.45 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCC
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGF 513 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 513 (604)
....++-++.+.|++++|.+..+.+.+. +|...++......+.++|++.|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3556788899999999999999999873 23334555555666777777763
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.35 E-value=1.5 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888765
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.18 E-value=2 Score=25.80 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 044872 156 YVNEAGKGRNVFVATSLVDLYAKCGNMEKAR 186 (604)
Q Consensus 156 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 186 (604)
+.++.. +.+..+|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334433 446667777777777777777765
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.76 E-value=2.8 Score=28.27 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 406 ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
.+.-++.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 355678899999999999999999999986443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.28 E-value=2.1 Score=26.72 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677889999999999999999988865
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.16 E-value=0.8 Score=38.80 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=54.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHH
Q 044872 137 VLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 137 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 216 (604)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777777777766566778888888888888777777777774333 2333455555666666666
Q ss_pred HHHHHHH
Q 044872 217 LDMFYNM 223 (604)
Q Consensus 217 ~~~~~~m 223 (604)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6665554
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.81 E-value=19 Score=36.28 Aligned_cols=85 Identities=8% Similarity=-0.022 Sum_probs=45.0
Q ss_pred HhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-P-MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
+...|.++.+...+... + +.....+...+++.....|+.+.|....+.++.-+-.++......+..-...|-+|++..
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 34456666666555544 1 122334555555555666666666666666665444444443333333344555666666
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+++...
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 6666654
No 317
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.21 E-value=7.7 Score=31.91 Aligned_cols=49 Identities=8% Similarity=0.067 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHc-cCCCCc-hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 415 KKTDLAEHVLNQLIA-LEPWNS-GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 415 ~~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+..+++.+++.+.+ -.|... .....|+-.+++.|+|+.+.++.+...+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 346667777777775 334432 3444566677788888888888777765
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.72 E-value=2.5 Score=24.70 Aligned_cols=25 Identities=20% Similarity=-0.013 Sum_probs=12.5
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCC
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.++...|+.++|.+.++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3344455555555555555554443
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.53 E-value=31 Score=29.10 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=18.4
Q ss_pred HHHhcCCHHHHHHHHccCCCCC-cchHHHHHHHHHh
Q 044872 175 LYAKCGNMEKARRVFDQMPEKD-IVSWSSMIQGYAS 209 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~ 209 (604)
.+...|++++|.++|+++.+.. ...|..-+.++|-
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 3456666777777766666533 2244433333333
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.47 E-value=3.2 Score=24.55 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 436 GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998876
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.41 E-value=11 Score=28.88 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH-HhCCCCChhHHHHHH
Q 044872 114 EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVN-EAGKGRNVFVATSLV 173 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li 173 (604)
++.+-++.+...++.|+.....+.|+||.+.+|+..|.++++-+. +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 555666667777788999999999999999999999999988766 3332 334555444
No 322
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.13 E-value=44 Score=30.58 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHccCCCCc------hhHH
Q 044872 375 MVDLLGRS-GQLDEAHELIKSM-----PMEPNAIVWGALLA---GCRLHKKTDLAEHVLNQLIALEPWNS------GNYV 439 (604)
Q Consensus 375 li~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~ 439 (604)
+...|..- .+++.|+..|+.. +.+.+...-..++. .-...+++.+|+.+|+++....-+++ .-|.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444433 4556666666555 11222222223333 23577889999999999875443332 2333
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHhh
Q 044872 440 LLSNIYSAS-HKWNDAAKIRSMMGD 463 (604)
Q Consensus 440 ~l~~~~~~~-g~~~~A~~~~~~m~~ 463 (604)
.-+.+|.-+ ++.-.+.+.+++-.+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh
Confidence 333444333 566566666665554
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.78 E-value=14 Score=32.95 Aligned_cols=73 Identities=21% Similarity=0.081 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCHHHHH
Q 044872 113 EEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG---KGRNVFVATSLVDLYAKCGNMEKAR 186 (604)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A~ 186 (604)
++|++.|-++...+.--++... ..+..+-...|.+++.+++-.+++.. -.+|+.++.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq-~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQ-YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHH-HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4667777777665544333333 33333434567777777777666542 2456777777777777777777663
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.57 E-value=13 Score=37.45 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=67.7
Q ss_pred CCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 311 NGYVKVAF-GVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 311 ~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
.|+...|- +++.-++...-.|+.+...+.+ ..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45544443 3444444444455555444443 4567777777777666553 23334556667777777777777777
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 390 ELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 390 ~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+-+.| +.+ .++.+...-.......|-++++.-.+++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777666 211 13333333333445566677777777777776654
No 325
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.40 E-value=25 Score=27.27 Aligned_cols=87 Identities=14% Similarity=0.106 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC 327 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 327 (604)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++..-+.+|-.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 34555555555444321 222222223345678899999998888888888888776553 567777777777777776
Q ss_pred CCCCCHHHHHH
Q 044872 328 GIQPNGNTFVG 338 (604)
Q Consensus 328 g~~p~~~t~~~ 338 (604)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 6 455555543
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.39 E-value=3.8 Score=23.04 Aligned_cols=31 Identities=16% Similarity=0.015 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.|..+...+...++++.|...+++.++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555566666666666666666665553
No 327
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=79.61 E-value=21 Score=31.14 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 417 TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
+++|...|+++.+.+|+| ..|..-..+. +.|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 667777888888899977 4555555554 3577777777776653
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.54 E-value=45 Score=29.65 Aligned_cols=90 Identities=11% Similarity=-0.020 Sum_probs=52.5
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHH-----HHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGC-----MVDLLGRSGQLDEAHELIKSMPME-PNAIVWGALLAGCRL 413 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~ 413 (604)
...+...+++++|...++..... |..+.+.. |.......|.+++|+..++...-+ -.......-...+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 34566677777777777755521 22222332 334566778888888888775311 011112222345777
Q ss_pred cCChHHHHHHHHHHHccCCC
Q 044872 414 HKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~ 433 (604)
.|+.++|...|++.++..++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888776643
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.54 E-value=2.5 Score=24.69 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++..++.+|.+.|++++|.+.++++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999999864
No 330
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.11 E-value=56 Score=30.52 Aligned_cols=229 Identities=15% Similarity=0.162 Sum_probs=124.5
Q ss_pred CCHHHHHHHHccCCC----CCcc---hHHHHHHHHHhCCCchHHHHHHHHHHH---CCCC--CCHHHHHHHHHHHHccCc
Q 044872 180 GNMEKARRVFDQMPE----KDIV---SWSSMIQGYASNGFPKEALDMFYNMQR---ENLK--PEYYTMVGVLSACASLGA 247 (604)
Q Consensus 180 g~~~~A~~~~~~~~~----~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~~~~~~~~ 247 (604)
...++|+.-|+++.+ +... +.--+|..+.+.|++++.++.|.+|+- ..+. -...+.++++.-.+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 455666666665533 1111 233466777777777777777777643 1122 134456666666665555
Q ss_pred hHHHHHHHHHHHH----c-CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------C-------cccHHHHHHH
Q 044872 248 LELGVWASSFMER----N-EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK--------D-------QVVWNAVVSG 307 (604)
Q Consensus 248 ~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~li~~ 307 (604)
.+.-...++--++ . +-..-..+-+-|...|...|.+.+-.+++.++... | ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5554444443322 1 11111223345666777777777777777766421 1 2356666778
Q ss_pred HHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHh-----ccCcHHHHHHHHHHchhhcCC--CCch---HHHHHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKC-GIQPNGNTFVGLLCGCT-----HAGLVDEGRQFFNSMSRVFSL--TPMI---EHYGCMV 376 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~~---~~~~~li 376 (604)
|..+.+-..-..+|++...- ..-|.+. ...+++-|. +.|.+++|..-|-++-+.+.- .|.. --|-.|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88887777777788876542 2334443 334555553 467788776544444333322 2222 2355556
Q ss_pred HHHhhcCCHHHHHHHHHh--C-CC--CCCHHHHHHHHHHHHhc
Q 044872 377 DLLGRSGQLDEAHELIKS--M-PM--EPNAIVWGALLAGCRLH 414 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~--~-~~--~p~~~~~~~ll~~~~~~ 414 (604)
.++.+.|-- -|+. . |. .|.......|+.+|...
T Consensus 280 NMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 280 NMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc
Confidence 777766521 1111 1 22 35566778888888654
No 331
>PRK10941 hypothetical protein; Provisional
Probab=78.92 E-value=10 Score=35.96 Aligned_cols=62 Identities=18% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..+.|-.+|.+.++++.|..+.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++.-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44566677899999999999999999999999988888999999999999999988877664
No 332
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.34 E-value=14 Score=35.14 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---------DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
|......+...++..-....+++++...+-++... ...+|-.++ ..-+.++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 33334444455565556667788888777666542 122332222 23467789999888889999999
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchh
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
..|+..++..+.+.+++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999998888776654
No 333
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.87 E-value=16 Score=34.77 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=59.0
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHhccCCC-CCc-----ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH
Q 044872 62 DCDEFVKTSLLNLYVHCGYLADALKVFDDIPD-KNV-----VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIV 135 (604)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 135 (604)
.....+...++..-....+++++...+-.+.. ++. .+-.+.++.+. .-++++++.++..=++.|+-||.+|+.
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 33444445555555555677777766654432 111 11112233222 235667777777777777778888888
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC
Q 044872 136 RVLTACTQLGDLSTAKWIHGYVNEAG 161 (604)
Q Consensus 136 ~ll~~~~~~g~~~~a~~~~~~~~~~g 161 (604)
.++..+.+.+++..|.++.-.++...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888877777777777766665543
No 334
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.81 E-value=8.5 Score=35.09 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 383 GQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 383 g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
.++..|..-+.+. .+.|+.. -|..=+-.+.+..+++.+..--++++++.|+.......++........+++|...+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 4455555544443 5677764 4555555667788889898888999999998888889999999999999999999888
Q ss_pred Hhh
Q 044872 461 MGD 463 (604)
Q Consensus 461 m~~ 463 (604)
..+
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 854
No 335
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.34 E-value=90 Score=31.96 Aligned_cols=83 Identities=14% Similarity=0.031 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHHH-CCCCCCh-----hhHHHHHHHHhcCC-ChHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHh
Q 044872 109 EGNLEEAINMFRRLLH-RGLKPDS-----FSIVRVLTACTQLG-DLSTAKWIHGYVNEAGKGRNV---FVATSLVDLYAK 178 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~-~g~~p~~-----~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~y~~ 178 (604)
..+++.|...+++... ...-|+. .+++.+...+.... .+..++.++.+.++..-.... ....-|++...-
T Consensus 60 T~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 60 TKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred hccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 4667888887777543 1223433 23444555555444 677788888887765311111 122345666667
Q ss_pred cCCHHHHHHHHcc
Q 044872 179 CGNMEKARRVFDQ 191 (604)
Q Consensus 179 ~g~~~~A~~~~~~ 191 (604)
..++..|.+++.-
T Consensus 140 dkD~~sA~elLav 152 (629)
T KOG2300|consen 140 DKDFPSALELLAV 152 (629)
T ss_pred hccchhHHHHHhc
Confidence 7888888888643
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.19 E-value=23 Score=36.95 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=21.6
Q ss_pred hcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHH
Q 044872 77 HCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRL 122 (604)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 122 (604)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344444444443322 23444555555555555555555555544
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.89 E-value=15 Score=32.70 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=51.2
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----CchhHHHHHHHHHhcCChHHH
Q 044872 381 RSGQLDEAHELIKSMPMEP--NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW----NSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 454 (604)
+-|+ ++|.+.|-.+.-.| +....-.-+..|....|.+++..++.+++++.+. |+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 56777776662222 3333444455556678899999999999875422 578899999999999998887
Q ss_pred H
Q 044872 455 A 455 (604)
Q Consensus 455 ~ 455 (604)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.61 E-value=12 Score=29.01 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 044872 13 HAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLL 72 (604)
Q Consensus 13 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 72 (604)
+..+-++.+...+.-|++....+.|++|.+..++..|.++++-+... ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 34444555555566777777777777777777777777777766443 222233555544
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.28 E-value=5.3 Score=24.79 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=16.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456666666677777777777666543
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.20 E-value=34 Score=26.56 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 044872 46 FQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHR 125 (604)
Q Consensus 46 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 125 (604)
-++|.-+-+.+...+-. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.. +.|..+.+..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 45566665555443311 233333344566788999999999999988999999888664 566666666666677666
Q ss_pred CCCCChhhH
Q 044872 126 GLKPDSFSI 134 (604)
Q Consensus 126 g~~p~~~t~ 134 (604)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 3444444
No 341
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.06 E-value=96 Score=31.65 Aligned_cols=206 Identities=13% Similarity=0.052 Sum_probs=97.9
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCccc--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCh
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTNFT--FPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEF--VKTSLLNLYVHCGYL 81 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~ 81 (604)
++.|+.+ +++.+.+.|..|+... ..+.+..++..|+.+ +.+.+++.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELD----IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 3445543 3444555676665432 334555566667764 344455666554432 122345556677888
Q ss_pred HHHHHHhccCCCC----CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhcCCChHHHHHHHH
Q 044872 82 ADALKVFDDIPDK----NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFS--IVRVLTACTQLGDLSTAKWIHG 155 (604)
Q Consensus 82 ~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~ 155 (604)
+.+..+++.-... +..-++.| ...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+..+.+
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L-- 154 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL-- 154 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 8888777654321 11122333 333445554 45555566666654322 12234444456666544443
Q ss_pred HHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 044872 156 YVNEAGKGRNVF--VATSLVDLYAKCGNMEKARRVFDQMPEKDIV---SWSSMIQGYASNGFPKEALDMFYNMQRENLKP 230 (604)
Q Consensus 156 ~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 230 (604)
++.|..++.. ...+-+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|..+
T Consensus 155 --l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~ 228 (413)
T PHA02875 155 --IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADC 228 (413)
T ss_pred --HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCc
Confidence 3444333211 1122333445567766666666554433221 1123333334445443 334444556555
Q ss_pred CH
Q 044872 231 EY 232 (604)
Q Consensus 231 ~~ 232 (604)
+.
T Consensus 229 n~ 230 (413)
T PHA02875 229 NI 230 (413)
T ss_pred ch
Confidence 53
No 342
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.00 E-value=33 Score=30.53 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=38.6
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
..++.+.+.++.|.+-..+. .+.|... ....-..+|-+...++.|++-|+++++.+|..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 34556667777776655444 4444322 22233345777888999999999999999965
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.23 E-value=6 Score=21.90 Aligned_cols=21 Identities=19% Similarity=0.214 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 044872 271 TTLIDMYAKCGRMAQACKVFR 291 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~ 291 (604)
..+...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666654
No 344
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.18 E-value=1.9 Score=41.33 Aligned_cols=87 Identities=21% Similarity=0.248 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044872 382 SGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
.|.+++|++.|... +..|. ...|..-.+++.+.++...|+.-+..+++++|+....|-.-..+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 34455555555444 33332 22344344455556666666666666666666665556555556666666666666666
Q ss_pred HHhhCCCcc
Q 044872 460 MMGDKGIQK 468 (604)
Q Consensus 460 ~m~~~~~~~ 468 (604)
...+.++..
T Consensus 207 ~a~kld~dE 215 (377)
T KOG1308|consen 207 LACKLDYDE 215 (377)
T ss_pred HHHhccccH
Confidence 666655543
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.74 E-value=13 Score=35.10 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.....|...|.+.+|.++.++++.++|-+...+..|.+.++..|+--+|.+-+.++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34445788999999999999999999999999999999999999998888888887754
No 346
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.72 E-value=18 Score=31.58 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC----hHHHHHHHHHHh
Q 044872 417 TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK----WNDAAKIRSMMG 462 (604)
Q Consensus 417 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 462 (604)
+++|..-|++++.++|+...++..++++|...|. ..+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 5667777788888999999999999999987664 334455555443
No 347
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.68 E-value=1.2e+02 Score=33.05 Aligned_cols=66 Identities=18% Similarity=0.243 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCC---CCCcchHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHH
Q 044872 167 FVATSLVDLYAKCGNMEKARRVFDQMP---EKDIVSWSSMIQGYASNGF-------PKEALDMFYNMQRENLKPEYY 233 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~ 233 (604)
.+|- +|-.+.+||.+++|.++..+.. ++....+-..+..|..+.+ -++...-|++..+.....|.+
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3443 6677788888888888883332 2334456666666666422 234455566555443322443
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.58 E-value=42 Score=35.19 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=67.9
Q ss_pred HHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 044872 175 LYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWA 254 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 254 (604)
...+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |.+|+-.+...|+-+....+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 346678888888776543 3567788888888888998888888876543 45566666677776655555
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044872 255 SSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREM 293 (604)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 293 (604)
-....+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 715 a~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 715 ASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555432 23333566677777777776543
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.21 E-value=1.3e+02 Score=31.22 Aligned_cols=160 Identities=10% Similarity=0.095 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKD--KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 345 (604)
...-++++.++..-..+-.+.+..+|.. .+-..+..++..|.++ ..+.-..+|+++.+ ..-|.+.+..-+.-+..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYE 143 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHH
Confidence 3334455555555555555555555443 2344555566666655 34455566666655 33344444444443444
Q ss_pred cCcHHHHHHHHHHchhhcCCCCc------hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPM------IEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPNAIVWGALLAGCRLHK 415 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~~ 415 (604)
.++.+.+..+|..+.. .+.|. .+.|.-++..- ..+.+.-..+..++ +...-.+.+.-+-.-|....
T Consensus 144 kik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 144 KIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 4555666666655543 22221 12333332211 12333333333333 22222333333334455556
Q ss_pred ChHHHHHHHHHHHccCCCC
Q 044872 416 KTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~ 434 (604)
++.+|.+++..+++.+..|
T Consensus 220 N~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 220 NWTEAIRILKHILEHDEKD 238 (711)
T ss_pred CHHHHHHHHHHHhhhcchh
Confidence 6666666666555544433
No 350
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.63 E-value=10 Score=29.03 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=32.4
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+..+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345566667788888888888888888888888888887777653
No 351
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.17 E-value=1.2e+02 Score=30.43 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=50.0
Q ss_pred CHHHHHHHH---HHHHhcCChHHHHHHHHHHHccCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHhh
Q 044872 400 NAIVWGALL---AGCRLHKKTDLAEHVLNQLIALEPW-NSGNYVLLSNIYS-ASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 463 (604)
|...|.++. ..+.+.|-+.-|.+..+-++.++|. ||......++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 444555544 4578899999999999999999998 8888888888885 77888878887776554
No 352
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=69.92 E-value=1.4e+02 Score=30.82 Aligned_cols=421 Identities=6% Similarity=-0.014 Sum_probs=0.0
Q ss_pred chhhcCC-chHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC-hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 044872 4 GFVSNDC-FQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHD-FQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYL 81 (604)
Q Consensus 4 ~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 81 (604)
.|++... +.+.-.+|.+|+...+. ++..|.....-....+. ++.|+.++...++.. +.++..|-....+-...-..
T Consensus 113 ~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~eyfrmEL~~~~K 190 (568)
T KOG2396|consen 113 AFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEYFRMELMYAEK 190 (568)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhccCCCCCc--------ccHHHHHHHHHhCCChhHHHH--HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHH
Q 044872 82 ADALKVFDDIPDKNV--------VSWTAIISGYINEGNLEEAIN--MFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAK 151 (604)
Q Consensus 82 ~~A~~~f~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 151 (604)
-.+++..-.....+. ..|+......-...-...-++ +++.....+-.+....=..--.+-...+..+...
T Consensus 191 l~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~la 270 (568)
T KOG2396|consen 191 LRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLA 270 (568)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHH
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHH-----H
Q 044872 152 WIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWSSMIQGYASNGFPKEALDMFYNM-----Q 224 (604)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~ 224 (604)
+-+-.+...+ +.......-..+.-.-..+....+|++..+ +....|+..|..+...-....-..+.+.| .
T Consensus 271 qr~l~i~~~t---dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~ 347 (568)
T KOG2396|consen 271 QRELEILSQT---DLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKA 347 (568)
T ss_pred HHHHHHHHHh---hccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q ss_pred HCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh--------cCCC
Q 044872 225 RENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFRE--------MKDK 296 (604)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~ 296 (604)
..+......-+...............+...-..+...++..+...+-.-+....+... ++.-+|.+ +..+
T Consensus 348 ~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~ 425 (568)
T KOG2396|consen 348 HELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSE 425 (568)
T ss_pred HHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcch
Q ss_pred CcccHHHHH-HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHH
Q 044872 297 DQVVWNAVV-SGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFV-GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGC 374 (604)
Q Consensus 297 ~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 374 (604)
-..+|++.. ..+.+....+..+..+..+ ..|+..|+. .++.-+...|-+++|...+..+.. -.+|+...|..
T Consensus 426 ~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~ 499 (568)
T KOG2396|consen 426 LLISWASASEGDSLQEDTLDLIISALLSV----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRK 499 (568)
T ss_pred hHHHHHHHhhccchhHHHHHHHHHHHHHh----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHH
Q ss_pred HH---HHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCchhH
Q 044872 375 MV---DLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA-LEPWNSGNY 438 (604)
Q Consensus 375 li---~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~ 438 (604)
+| .-...+| +.-+.++++.+ .+-.|+..|.-.+.--..+|..+.+-.++.++.+ ++|....++
T Consensus 500 miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~~af 568 (568)
T KOG2396|consen 500 MIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESAEAF 568 (568)
T ss_pred HHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhhhcC
No 353
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.87 E-value=92 Score=33.70 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=61.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcC
Q 044872 307 GLSMNGYVKVAFGVFGQLEKCGIQPNGN---TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSG 383 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 383 (604)
.|...+..+.|.++|++..+ +.|+.. -+..|+.+-.+ .++...+ +. ..-..|-.+++|.|
T Consensus 296 ~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~E----lq---------~IgmkLn~LlgrKG 358 (1226)
T KOG4279|consen 296 NYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLE----LQ---------QIGMKLNSLLGRKG 358 (1226)
T ss_pred CCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHH----HH---------HHHHHHHHHhhccc
Confidence 35556667788889988877 777664 34444433221 1111111 10 01122345678888
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 384 QLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 384 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.++.-.++++-. ..+.+-.-.+++.+|.++.+.|.+++|...
T Consensus 359 ~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 359 ALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred hHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 888777766432 234455567889999999999999988654
No 354
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.70 E-value=2.4e+02 Score=32.39 Aligned_cols=254 Identities=9% Similarity=-0.029 Sum_probs=130.9
Q ss_pred HHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC
Q 044872 86 KVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRN 165 (604)
Q Consensus 86 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 165 (604)
.+.+.+.++|..+-...+..+.+.+.. +++..+..++.. +|...=...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 344444556666666666666666543 344555555432 2333333344444333221111122223332 245
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044872 166 VFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASL 245 (604)
Q Consensus 166 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (604)
..+-...+..+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 56666666665544321 12234445555666555555666665544322 12222 134544445555666665
Q ss_pred CchHH-HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHH
Q 044872 246 GALEL-GVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQAC-KVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQ 323 (604)
Q Consensus 246 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 323 (604)
+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. +++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2233333333 346777778888888888765543 34455555665555556666766664 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchh
Q 044872 324 LEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 324 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
+.+ .|+...-...+.++.....-..+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 654 56666666677777665334456666665553
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.25 E-value=18 Score=26.69 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=22.5
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
+....++|+..|....++..-.|+ ..+..+++.+|...|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555543222222 22445555555555555555443
No 356
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.24 E-value=97 Score=27.61 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=53.0
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCccc--HHHHHHHHHhCCCHHH
Q 044872 241 ACASLGALELGVWASSFMERNEFLSN--PVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVV--WNAVVSGLSMNGYVKV 316 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 316 (604)
.....++++.|...+...+......+ ..+--.|.......|.+++|...++....++-.+ ...-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34555666666666665554322211 1122234556667788888888888776654322 2223356778888888
Q ss_pred HHHHHHHHHHCC
Q 044872 317 AFGVFGQLEKCG 328 (604)
Q Consensus 317 A~~~~~~m~~~g 328 (604)
|..-|.+.++.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 888888887765
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.16 E-value=25 Score=31.71 Aligned_cols=64 Identities=19% Similarity=0.095 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
.+..+..+.+.+++.+|+...+.- ..+| |...-..++..++..|++++|..-++-.-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566778889999998887654 5556 445667788889999999999998888888888764
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.95 E-value=16 Score=37.80 Aligned_cols=97 Identities=15% Similarity=0.059 Sum_probs=65.7
Q ss_pred cCcHHHHHHHHHHchhhcCCCCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPM--IEHYGCMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
.|+...|...+.... ...|. ......|.+.+.+.|...+|-.++.+. .+ ...+.++-++.+++....+.+.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 577777777776554 33442 223445566677777777888777654 22 223457777788888888888899
Q ss_pred HHHHHHHccCCCCchhHHHHHHHH
Q 044872 422 HVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
+.+++++++.|+++..-..|..+-
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHH
Confidence 999888888888877766665443
No 359
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.94 E-value=1.1e+02 Score=28.26 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=44.9
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 310 MNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 310 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
.++++++|++++..- .+.|+.. ..++.++...|+.+.|..++..+.. .-.+......++.. ..++.+.||.
T Consensus 90 D~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 90 DHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred ChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 455566666555221 1222211 1344555556666666666665431 11222223333333 4456777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh
Q 044872 390 ELIKSMPMEPNAIVWGALLAGCRL 413 (604)
Q Consensus 390 ~~~~~~~~~p~~~~~~~ll~~~~~ 413 (604)
.+.+..+.+-....|..++..|..
T Consensus 161 ~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 161 SFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHH
Confidence 766665422123355555555543
No 360
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.80 E-value=10 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 439 VLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 439 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
..|+.+|...|+.+.|+++++...+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999888643
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.16 E-value=1.4e+02 Score=30.42 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=68.3
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhccCCCCCc---ccHHHHHHHHHhCCChhHH
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFV--KTSLLNLYVHCGYLADALKVFDDIPDKNV---VSWTAIISGYINEGNLEEA 115 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A 115 (604)
...|+.+.+ +.+++.|..++... ..+.+...+..|+.+-+.-+++.-..++. ..++ .+...+..|+.+.+
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t-~L~~A~~~g~~~~v 84 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIES-ELHDAVEEGDVKAV 84 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCccc-HHHHHHHCCCHHHH
Confidence 345666444 44455676665432 34455666677888777666654333322 2233 34445567776654
Q ss_pred HHHHHHHHHCCCCCChh---hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHc
Q 044872 116 INMFRRLLHRGLKPDSF---SIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFV--ATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 116 ~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~~~ 190 (604)
..++ +.|...+.. .-.+.+...+..|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 85 ~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 85 EELL----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHH----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 4443 333221110 0112233334455554 4444555665554321 1233444556677766666665
Q ss_pred cC
Q 044872 191 QM 192 (604)
Q Consensus 191 ~~ 192 (604)
.-
T Consensus 157 ~g 158 (413)
T PHA02875 157 HK 158 (413)
T ss_pred cC
Confidence 43
No 362
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.15 E-value=43 Score=30.58 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCh-------HHHHHHHHHHHccC--CC----CchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 403 VWGALLAGCRLHKKT-------DLAEHVLNQLIALE--PW----NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.+.-+...|+..|+. ..|.+.|+++.+.+ |. .......++.++.+.|+.++|.+.|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 444455556667763 44555555555433 22 23466778999999999999999999998653
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.37 E-value=49 Score=26.96 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 316 VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 316 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+..+-++......+.|+.......|+||.+.+++..|.++|+-++.+. .+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH
Confidence 455566677777899999999999999999999999999999988643 343445665543
No 364
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.68 E-value=1.2e+02 Score=30.60 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=33.4
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCcHHHHHHHHHHchh
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGN--TFVGLLCGCT--HAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~ 361 (604)
.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3667888888888888776 555544 2333334433 35567788888887664
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.75 E-value=1.6e+02 Score=30.10 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=23.3
Q ss_pred cHHHHHHHHHh---CCChhHHHHHHHHHHHCCCCCChh
Q 044872 98 SWTAIISGYIN---EGNLEEAINMFRRLLHRGLKPDSF 132 (604)
Q Consensus 98 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 132 (604)
.+..+++++.+ .++++.|+..+..|.+.|..|...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 34455555554 477888888888888877666533
No 366
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.51 E-value=37 Score=28.55 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 385 LDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 385 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|..+-...+++|.+.|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777775 333334455567789999999999999999999998888888888776654
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=62.00 E-value=1.9e+02 Score=29.57 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHC---CC-CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 044872 113 EEAINMFRRLLHR---GL-KPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRV 188 (604)
Q Consensus 113 ~~A~~~~~~m~~~---g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 188 (604)
++...++.+.... |+ ..+......++..+ .|+...+..+++.+...+...+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 4555555554322 33 34444444444433 5777777777666544311111 1222222
Q ss_pred HccC---CCCCcchHHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 189 FDQM---PEKDIVSWSSMIQGYAS---NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 189 ~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
+... ..++...+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++..
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2211 11223345556666655 47899999999999999887775554444444433
No 368
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.82 E-value=15 Score=20.95 Aligned_cols=29 Identities=7% Similarity=0.115 Sum_probs=21.0
Q ss_pred CChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 415 KKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 415 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
|+.+.+..+|++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677888888888877877766665544
No 369
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=60.52 E-value=62 Score=29.88 Aligned_cols=55 Identities=9% Similarity=-0.069 Sum_probs=47.2
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+...|++-++++.-..++...|.|..+|..-+.+.+..=+.++|.+=|....+.
T Consensus 239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3457788888999999999999999999999999988888888998888888764
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.42 E-value=1.5e+02 Score=27.96 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchH
Q 044872 164 RNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSW 200 (604)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 200 (604)
-|+.....+...|.+.|++.+|+..|-.-..++...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 3677888888899999999998888755444443333
No 371
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=60.35 E-value=1.4e+02 Score=27.27 Aligned_cols=161 Identities=13% Similarity=0.046 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG-KGRNVFVATSLVDL 175 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~ 175 (604)
.+||-|.--+...|+++.|.+.|+...+.+..-+-...|.-+ ++---|++..|.+=+-..-+.. -+|-...|--|+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 456666666667777777777777766643221211111111 2223456666655444443332 1222222222221
Q ss_pred HHhcCCHHHHHH-HHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCc
Q 044872 176 YAKCGNMEKARR-VFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-------YYTMVGVLSACASLGA 247 (604)
Q Consensus 176 y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~ll~~~~~~~~ 247 (604)
..-+..+|.. +.++....|..-|..-|-.|.-..-.++ .+|++.... -.-+ ..||--+..-+...|+
T Consensus 178 --~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 1123344432 3333344444445444443332222222 222333221 1111 2356667777777777
Q ss_pred hHHHHHHHHHHHHcCCC
Q 044872 248 LELGVWASSFMERNEFL 264 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~ 264 (604)
+++|..+|...+..++-
T Consensus 253 ~~~A~~LfKLaiannVy 269 (297)
T COG4785 253 LDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 77777777777665443
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.22 E-value=33 Score=25.31 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=35.2
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHH
Q 044872 310 MNGYVKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 310 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
...+.++|+..|....+.-..|.. .++..++.+++..|++.+.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999888775433332 57888889999999988877653
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.08 E-value=1.6e+02 Score=27.92 Aligned_cols=30 Identities=23% Similarity=0.172 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 044872 265 SNPVLGTTLIDMYAKCGRMAQACKVFREMK 294 (604)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 294 (604)
-++.....+...|.+.|++.+|+.-|-.-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 367888899999999999999998775443
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=60.04 E-value=85 Score=24.83 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
...++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 456777777777777653 233344444556788899999965555556688888877755 47788888888887776
Q ss_pred HCCCCCCHHHH
Q 044872 225 RENLKPEYYTM 235 (604)
Q Consensus 225 ~~g~~p~~~t~ 235 (604)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 654 3433333
No 375
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=59.45 E-value=1.1e+02 Score=25.88 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCC---------CCCcccHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCChhhHHHH
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIP---------DKNVVSWTAIISGYINEGN-LEEAINMFRRLLHRGLKPDSFSIVRV 137 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 137 (604)
.|.++.-.+..+.+.-...+++.+. ..+-.+|+.++.+.++... ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444332 1355567777777755554 33456677777776677777777777
Q ss_pred HHHHhcC
Q 044872 138 LTACTQL 144 (604)
Q Consensus 138 l~~~~~~ 144 (604)
+++|.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776554
No 376
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.86 E-value=25 Score=22.62 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=14.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHC
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKC 327 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~ 327 (604)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345556666666666666666543
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=58.81 E-value=4.7e+02 Score=33.03 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=81.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHhcc-CCCCCcccHHHHHHHHHhCCCh
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGL--DCDEFVKTSLLNLYVHCGYLADALKVFDD-IPDKNVVSWTAIISGYINEGNL 112 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~ 112 (604)
+..+..+.+.+..|...++.-..... ......+-.+...|+.-+++|....+... ..+++ ...-|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 33344455666666666665200000 01122333444577777777776666552 22222 22334445567888
Q ss_pred hHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhcCCHHHHHHHHc
Q 044872 113 EEAINMFRRLLHRGLKPD-SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS-LVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~~ 190 (604)
..|...|+++.+.+ |+ ..+++.+++..-..+.++...-..+-.... ..+....+++ =+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88888888887653 33 556776776666666666555433322221 1222222222 2333355666666555544
Q ss_pred cCCCCCcchHHHH
Q 044872 191 QMPEKDIVSWSSM 203 (604)
Q Consensus 191 ~~~~~~~~~~~~l 203 (604)
..+..+|...
T Consensus 1543 ---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVE 1552 (2382)
T ss_pred ---cccccchhHH
Confidence 4455555544
No 378
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.11 E-value=20 Score=36.31 Aligned_cols=85 Identities=18% Similarity=0.080 Sum_probs=57.1
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 379 LGRSGQLDEAHELIKSM-PMEPNAIVWGAL-LAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
+...+.++.|..++.++ ...||-..|-+. ..++.+.+++..|..=+.++++.+|.....|..-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455666666666655 556654433322 2566777777777777777778777777777777777777777777777
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.++....
T Consensus 94 ~l~~~~~ 100 (476)
T KOG0376|consen 94 DLEKVKK 100 (476)
T ss_pred HHHHhhh
Confidence 7775543
No 379
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.90 E-value=17 Score=39.67 Aligned_cols=97 Identities=18% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHE 390 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 390 (604)
+.++++.+.+.+...--| .++|..+.+.|..+-|+.+.+.=..++ .+...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 345666555444322211 234555667777777776665443332 23457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 391 LIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 391 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
.-.++. |..+|..|......+|+.+.|+..|++....+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe 702 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE 702 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 988875 77899999999999999999999998865443
No 380
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.39 E-value=2.9e+02 Score=30.10 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHh-CCCCC--CcccHHHHHHHHH-ccCChHHHHHHHHHHHHhCCCCChh-----HHHHHHHHHHhcCChH
Q 044872 12 QHAIEFYNSMRN-EGFLP--TNFTFPFVLKACA-REHDFQLGVRSHSLIVKAGLDCDEF-----VKTSLLNLYVHCGYLA 82 (604)
Q Consensus 12 ~~A~~~~~~m~~-~g~~p--~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~ 82 (604)
.-|+..++.+.+ ..+.| +..++..+...+. ...+++.|+..+++.+...-.++.. ....++..|.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 356666776663 22333 4456666666665 4567888888888765543332221 2234456666665554
Q ss_pred HHHHHhccCCC----CCcccHH----HH-HHHHHhCCChhHHHHHHHHHHHCC---CCCChhhHHHHHHHHh--cCCChH
Q 044872 83 DALKVFDDIPD----KNVVSWT----AI-ISGYINEGNLEEAINMFRRLLHRG---LKPDSFSIVRVLTACT--QLGDLS 148 (604)
Q Consensus 83 ~A~~~f~~~~~----~~~~~~~----~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~--~~g~~~ 148 (604)
|.+..++..+ .....|. .+ +..+...+++..|++.++.....- ..|-...+..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 7777665432 1112222 22 222333478888888888776532 2333344445555543 345455
Q ss_pred HHHHHHHHHHHhCC---------CCChhHHHHHHHHH--HhcCCHHHHHHHHcc
Q 044872 149 TAKWIHGYVNEAGK---------GRNVFVATSLVDLY--AKCGNMEKARRVFDQ 191 (604)
Q Consensus 149 ~a~~~~~~~~~~g~---------~~~~~~~~~li~~y--~~~g~~~~A~~~~~~ 191 (604)
.+.+..+.+..... .|-..++..+++.+ ...|+++.+...+++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56555555533221 23445566665543 445665555554433
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.97 E-value=38 Score=30.27 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 398 EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
.|+..++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555555555555555555555555555555
No 382
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.84 E-value=1.1e+02 Score=29.05 Aligned_cols=85 Identities=9% Similarity=0.134 Sum_probs=44.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHC--CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh--
Q 044872 103 ISGYINEGNLEEAINMFRRLLHR--GLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK-- 178 (604)
Q Consensus 103 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-- 178 (604)
|.+++..+++.+++...-+--+. .++|. ..-.-|-.|++.+.+..+.++-..-++..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67777778887777655444332 12222 2333333456666666666665555543222233335555555544
Q ss_pred ---cCCHHHHHHHH
Q 044872 179 ---CGNMEKARRVF 189 (604)
Q Consensus 179 ---~g~~~~A~~~~ 189 (604)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666654
No 383
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.64 E-value=67 Score=26.68 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=26.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 406 ALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
-|.-++.+.++++.+.++.+.+++.+|+|..
T Consensus 76 YLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 76 YLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 3555788999999999999999999998753
No 384
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.87 E-value=2.9e+02 Score=29.65 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc-C--ChHHHHH
Q 044872 384 QLDEAHELIKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS-H--KWNDAAK 456 (604)
Q Consensus 384 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~ 456 (604)
+.+.+..++.+....-+......|...|.. ..+.+.|...+....+.. ......++.++-.. | .+..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 344455555554323333433434333322 235667777776665544 45666666666322 1 2567777
Q ss_pred HHHHHhhC
Q 044872 457 IRSMMGDK 464 (604)
Q Consensus 457 ~~~~m~~~ 464 (604)
++++..+.
T Consensus 531 ~~~~~~~~ 538 (552)
T KOG1550|consen 531 YYDQASEE 538 (552)
T ss_pred HHHHHHhc
Confidence 77776653
No 385
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.26 E-value=91 Score=24.80 Aligned_cols=28 Identities=14% Similarity=0.463 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQR 225 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (604)
.-|..|+.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999998876
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.05 E-value=3.2e+02 Score=29.94 Aligned_cols=382 Identities=11% Similarity=-0.026 Sum_probs=171.9
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDL 147 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 147 (604)
-..-+..+.+.+++......+.. +..+...-.....+....|+.++|....+.+-..|- ........++..+.+.|.+
T Consensus 102 r~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 33444555667777777773322 234555555666777778887777777777655542 2345566667666655544
Q ss_pred HHHH--HHHHHHHHhCC-----------CCC-hhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHH--hCC
Q 044872 148 STAK--WIHGYVNEAGK-----------GRN-VFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYA--SNG 211 (604)
Q Consensus 148 ~~a~--~~~~~~~~~g~-----------~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g 211 (604)
.... +=+..+...|- .++ ......++..+.+ ...+...+.... ++...-..++.++. ...
T Consensus 180 t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~ 255 (644)
T PRK11619 180 DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQ 255 (644)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHh
Confidence 3321 11111111110 111 1111122222211 122222222211 11111111111111 234
Q ss_pred CchHHHHHHHHHHHC-CCCCCHHH--HHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 044872 212 FPKEALDMFYNMQRE-NLKPEYYT--MVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACK 288 (604)
Q Consensus 212 ~~~~A~~~~~~m~~~-g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (604)
+.+.|..++...... +..++... ...+....+..+..+.+...+....... .+..+...-+..-.+.++++.+..
T Consensus 256 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 256 DAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHH
Confidence 456677777665432 22222221 1122222222211334444444332221 133333334444457777777777
Q ss_pred HHHhcCCC--CcccH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH-HHHHHHchhhcC
Q 044872 289 VFREMKDK--DQVVW-NAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEG-RQFFNSMSRVFS 364 (604)
Q Consensus 289 ~~~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a-~~~~~~~~~~~~ 364 (604)
.|..|... +...| -=+..++...|+.++|...|+++.. .. +|-.++.+ .+.|..-.- ......-.....
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~~~~~~~~~~~~ 406 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKIDKAPKPDSALT 406 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCCCCCCchhhhhc
Confidence 77777541 21122 1244555567788888888777632 11 24333322 111211000 000000000000
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCCchhHHHH
Q 044872 365 LTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALE---PWNSGNYVLL 441 (604)
Q Consensus 365 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l 441 (604)
-.| -..-+..+...|+..+|...+..+-...+......+.......|..+.+..........+ -.-+..|...
T Consensus 407 ~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~ 482 (644)
T PRK11619 407 QGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDE 482 (644)
T ss_pred cCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHH
Confidence 001 112235566788888888888776223455555566666678888888887765433211 0112345556
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCcc
Q 044872 442 SNIYSASHKWNDAAKIRSMMGDKGIQK 468 (604)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~m~~~~~~~ 468 (604)
...+++.-..+.+.-.--...+.+..|
T Consensus 483 ~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 483 FRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 666666556666554333333444543
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.00 E-value=35 Score=26.23 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=37.3
Q ss_pred HHhcCChHHHHHHHHHHHccCCC----C-----chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPW----N-----SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..+.|++..|.+.+.+....... . ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677888887777776643211 1 23445578888999999999999998865
No 388
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.84 E-value=1.1e+02 Score=25.19 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=34.5
Q ss_pred HHHHHHHHHHc--cCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 419 LAEHVLNQLIA--LEPWNSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 419 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
.+.++|+.|.. ++-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888875 5566778899999999999999999999875
No 389
>PRK12798 chemotaxis protein; Reviewed
Probab=54.58 E-value=2.5e+02 Score=28.47 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=113.6
Q ss_pred cCCHHHHHHHHHhcCCC----CcccHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCcHH
Q 044872 280 CGRMAQACKVFREMKDK----DQVVWNAVVSG-LSMNGYVKVAFGVFGQLEKCGIQPNGN----TFVGLLCGCTHAGLVD 350 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~----~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 350 (604)
.|+.++|.+.+..+... ....+-+|+.+ .....+..+|+++|++.+- ..|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68888888888887643 34556666655 3456678899999998876 556443 3333444567889999
Q ss_pred HHHHHHHHchhhcCCCCchHHHHH-HHHHHhh---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGC-MVDLLGR---SGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQ 426 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~-li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 426 (604)
++..+-..-.++|.-.|-...|.. ++..+.+ .-..+.-..++..|.-.--...|..+.+.-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888777766666655554433322 2333333 334455555666664222345888888899999999999999999
Q ss_pred HHccCCCCchhHHHHHHHH-----HhcCChHHHHHHHHHHhh
Q 044872 427 LIALEPWNSGNYVLLSNIY-----SASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 427 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~m~~ 463 (604)
+..+...+ ..-...+..| .-..+.+++.+.+..+..
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 98766332 2222222222 223456666666665543
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.69 E-value=27 Score=31.81 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=43.5
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
+..+.|+.+.|.+++++. ...| ....|-.+...--+.|+.+.|.+.+++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677778888888777 4444 45578888777888888888888898888888876
No 391
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.43 E-value=4.1e+02 Score=30.64 Aligned_cols=255 Identities=10% Similarity=-0.041 Sum_probs=122.8
Q ss_pred HHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc
Q 044872 187 RVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSN 266 (604)
Q Consensus 187 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (604)
.+...+..+|...-..-+..+.+.+. .++...+.+.... +|...-...+.++...+........+..+++. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444456666666566666666554 3355555555432 23333233344443332111111222223322 45
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA 346 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 346 (604)
..+-.+.++.+...+.- ....+...+.++|...-...+.++.+.+..+. +..+. -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555666666544321 12344555566666666666666665544322 11222 245555555566666665
Q ss_pred CcHHH-HHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 044872 347 GLVDE-GRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLN 425 (604)
Q Consensus 347 g~~~~-a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 425 (604)
+..+. +...+..+.+ .++...-...+.++++.|....+...+..+-..+|..+=...+.++...+. +++...+.
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 54332 2333333332 355666667777788777765543333333223455455555666666654 34555555
Q ss_pred HHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 426 QLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 426 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+++ +| +...-...+.++.+.+.-..+...+....+
T Consensus 845 ~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5543 23 334444455555554323345555555543
No 392
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.36 E-value=1.7e+02 Score=28.36 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=25.5
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHH
Q 044872 307 GLSMNGYVKVAFGVFGQLEKCGIQPNGN---TFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
+-.+.|+..+|.+.|+++.+. .|-.. ....++.+|.....+.....++.
T Consensus 284 CARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567777777777776552 23111 22345555555554444444443
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.33 E-value=1.7e+02 Score=27.83 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=37.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--
Q 044872 204 IQGYASNGFPKEALDMFYNMQR--ENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK-- 279 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 279 (604)
|.+++..++|.+++...-+--+ +.++|. ..-.-|-.|++.+....+.++-+.-++..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 5677777777777665443332 123332 2222223344555544444444333332212222234444444433
Q ss_pred ---cCCHHHHHHHH
Q 044872 280 ---CGRMAQACKVF 290 (604)
Q Consensus 280 ---~g~~~~A~~~~ 290 (604)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 34555555443
No 394
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.15 E-value=1.9e+02 Score=26.73 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=32.3
Q ss_pred hhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHH-H-HH-hcCChHHHHHHHHHHHccCCCCc
Q 044872 380 GRSGQLDEAHELIKSM---PMEPNAIVWGA---LLA-G-CR-LHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~---~~~p~~~~~~~---ll~-~-~~-~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+..+++.+|.++|++. ....+..-|.. ++. + |. -..+.-.+...+++..+++|.-.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 4567777888887776 22222223322 222 1 22 22566677788888888888743
No 395
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.06 E-value=54 Score=29.31 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=29.5
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
...+.+......+.+.+.....|+..+|..++..+...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444433345566666666666666666666666666665
No 396
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=53.02 E-value=80 Score=32.06 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=29.8
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 392 IKSMPMEPNAI--VWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 392 ~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
|...++.|... ++.+-++.+.+++|+..|..+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 33345555433 66777778899999999999999999999854
No 397
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.45 E-value=2.3e+02 Score=29.75 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcC
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMK 294 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~ 294 (604)
..|+.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 356778888899999998888885
No 398
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.43 E-value=1.1e+02 Score=23.29 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHH
Q 044872 279 KCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAF 318 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 318 (604)
..|+.+.|.+++..++ +.+..|..+++++.+.|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 77777777777777777655543
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.22 E-value=1e+02 Score=24.51 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLH 124 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 124 (604)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999998876
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.02 E-value=2.3e+02 Score=27.12 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHH-----CCCCCCHH
Q 044872 168 VATSLVDLYAKCGNMEKARRVFDQMPEK---DIVSWSSMIQGYASNGFPKEALDMFYNMQR-----ENLKPEYY 233 (604)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~ 233 (604)
+.+.....|..+|.+.+|..+-+....- +...|-.++..++..|+--.|.+-++++.+ .|+..|..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 3455667889999999999988887653 456788899999999998888888777753 35555543
No 401
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.82 E-value=1.5e+02 Score=25.00 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=33.8
Q ss_pred CcccHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044872 297 DQVVWNAVVSGLSMNGY-VKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA 346 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 346 (604)
+..+|..++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55667777777755444 334567777777777777777777787776654
No 402
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.84 E-value=3.9e+02 Score=29.42 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHccCCCCCc
Q 044872 167 FVATSLVDLYAKCGNMEKARRVFDQMPEKDI 197 (604)
Q Consensus 167 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 197 (604)
.+-..|+..|...++++.|..++-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3444599999999999999999988877654
No 403
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=49.66 E-value=53 Score=20.00 Aligned_cols=18 Identities=28% Similarity=0.110 Sum_probs=8.8
Q ss_pred HHHHHHHhcCChHHHHHH
Q 044872 406 ALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~ 423 (604)
++.-.+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344444555555555555
No 404
>PRK10941 hypothetical protein; Provisional
Probab=48.76 E-value=1.2e+02 Score=28.92 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=48.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 373 GCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
+.+-..|.+.++++.|+...+.+ .+.|+ ..-|.--.-.|.+.|....|..-++..++.-|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34456677888888888888877 44454 34566666668888888888888888888888876543
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.69 E-value=3e+02 Score=27.73 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC---------CCCCC
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKD------KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC---------GIQPN 332 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 332 (604)
..+.-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++........+.... .+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCR 412 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 412 (604)
...+..+...+.+ +++.|.+.|-.......--|.. +.|..++....+.+.+
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~i---------------------------vtpsdv~iYggLcALA 281 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEI---------------------------VTPSDVAIYGGLCALA 281 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccce---------------------------ecchhhHHHHhhHhhc
Q ss_pred hcCChHHH-----HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 413 LHKKTDLA-----EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 413 ~~~~~~~a-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..+.-+.- -..|+.++++.| .....+..-| .+++....+++++++.+
T Consensus 282 tfdr~~Lk~~vi~n~~Fk~flel~P---qlr~il~~fy--~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 282 TFDRQDLKLNVIKNESFKLFLELEP---QLREILFKFY--SSKYASCLELLREIKPR 333 (466)
T ss_pred cCCHHHHHHHHHcchhhhhHHhcCh---HHHHHHHHHh--hhhHHHHHHHHHHhccc
No 406
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.47 E-value=2.5e+02 Score=26.75 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=63.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHccCchHHHHHHHH----HHHHcCCCCchhHHHHH
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEYYT-------MVGVLSACASLGALELGVWASS----FMERNEFLSNPVLGTTL 273 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l 273 (604)
.-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+... .|....-+..+.+..+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 334455666666666666666665554432 3334445555554433222211 12221112233444555
Q ss_pred HHHHHh-cCCHHHHHHHHHhcCC---CC------cccHHHHHHHHHhCCCHHHHHHHHHH----HHHCCCCCCHHHH
Q 044872 274 IDMYAK-CGRMAQACKVFREMKD---KD------QVVWNAVVSGLSMNGYVKVAFGVFGQ----LEKCGIQPNGNTF 336 (604)
Q Consensus 274 i~~~~~-~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~ 336 (604)
++.+.. ...++.-..+.....+ +. ...-.-+|..+.+.|.+.+|+.+... +.+..-+|+..+.
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 555433 2334444444433322 00 11123467778888888888876544 4444455555443
No 407
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=46.89 E-value=1e+02 Score=25.26 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 114 EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
+..+-+..+...++.|+.......|++|.+.+|+..|.++++-+..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445556666677889999999999999999999999999887654
No 408
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.40 E-value=4.7e+02 Score=29.35 Aligned_cols=355 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH----HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKAC----AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY 80 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 80 (604)
+..+|.+.+|++. ....| |......++.-+ ...+++..-......+...-+..++...-.-+-......+
T Consensus 357 ~~~~g~~~eAI~h---AlaA~---d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r 430 (894)
T COG2909 357 FAEHGLPSEAIDH---ALAAG---DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHR 430 (894)
T ss_pred HHhCCChHHHHHH---HHhCC---CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccC
Q ss_pred hHHHHHHhccCCCCCcc-----------cHHHHHHHHHhC-CChhHHHHHHHHHHH----CCCCCChhhHHHHHHHHhcC
Q 044872 81 LADALKVFDDIPDKNVV-----------SWTAIISGYINE-GNLEEAINMFRRLLH----RGLKPDSFSIVRVLTACTQL 144 (604)
Q Consensus 81 ~~~A~~~f~~~~~~~~~-----------~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~~~t~~~ll~~~~~~ 144 (604)
+++|..+.++....=.. .|++|-...... |++++|.++-+.... .-..+....+.++..+..-.
T Consensus 431 ~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~ 510 (894)
T COG2909 431 LAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIR 510 (894)
T ss_pred hHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHh
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHH-----HHhcC--CHHHHHHHHccCCCC----------CcchHHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDL-----YAKCG--NMEKARRVFDQMPEK----------DIVSWSSMIQGY 207 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-----y~~~g--~~~~A~~~~~~~~~~----------~~~~~~~li~~~ 207 (604)
|+++.|..+.....+..-.-++..+...... +...| ..++....|...... -......+..++
T Consensus 511 G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~ 590 (894)
T COG2909 511 GELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAW 590 (894)
T ss_pred chHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH
Q ss_pred HhC-CCchHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHcCCCC------chhHHHHHHHHHH
Q 044872 208 ASN-GFPKEALDMFYNMQRENLKPEYYTMV--GVLSACASLGALELGVWASSFMERNEFLS------NPVLGTTLIDMYA 278 (604)
Q Consensus 208 ~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~ 278 (604)
.+. +...++..-+.--......|-...+. .+.......|+++.|......+......+ -...+..-+....
T Consensus 591 ~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl 670 (894)
T COG2909 591 LRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWL 670 (894)
T ss_pred HHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhc
Q ss_pred hcCCHHHHHHHHHhcCCCCcc-------cHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHhccCc
Q 044872 279 KCGRMAQACKVFREMKDKDQV-------VWNAVVSGLSMNGYVKVAFGVFGQLEK---CGIQPNGNTFVGLLCGCTHAGL 348 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~a~~~~g~ 348 (604)
..|+.+.+.....+-..++.. .|..+...-...|-..+|.....+..+ ....-+...-..+.-+....|+
T Consensus 671 ~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l~~r~~~~~~r~l~l~~~L~~~~~~k~~ 750 (894)
T COG2909 671 AQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDELASRLTEDLNRNLRLLGLLYEGEAVKGQ 750 (894)
T ss_pred ccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHHhhhhhhhHhHHHHHHHHhhhhhhhhhh
Q ss_pred HHHHHHHHHHchhhcCC
Q 044872 349 VDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 349 ~~~a~~~~~~~~~~~~~ 365 (604)
......-.-...+..|+
T Consensus 751 ~~~~~~~~l~~~e~~g~ 767 (894)
T COG2909 751 LALDLLDALQLRERTGF 767 (894)
T ss_pred hHHHHHHHHHHHHHHHH
No 409
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=46.37 E-value=2.7e+02 Score=26.63 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=36.3
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCcccHHHHHHHHHhCCCHHHHHHHH
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-----KDQVVWNAVVSGLSMNGYVKVAFGVF 321 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~ 321 (604)
-.++..+...+++.+++.+++.+-.++++.... .|...|..+|..-...|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 344555556666666666777666666665432 36667777777777777765444443
No 410
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.32 E-value=74 Score=30.40 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=32.4
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
..+.|+.++|..+|+.++.+.|.++....-++.......+.-+|...+-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 345677777777777777777777766666666555555555555555443
No 411
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=45.31 E-value=96 Score=24.42 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=43.9
Q ss_pred HHhhhHHHHHHHHccccCCCCCeEEEEecccccCChhHHHHHHhhhcCceEEEecCC
Q 044872 532 FLACHSEKLALAFGLITTAPKDVIRIAKNLRVCGDCHEAIKLISKITGREIIVRDNN 588 (604)
Q Consensus 532 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~ 588 (604)
.|..|.|.-++--=-.+..+|..+.|.-.++-|..|.-++.-.+.-.+-.|+-++.+
T Consensus 46 slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 46 SLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 367788776543322334459998888899999999999999999999888877643
No 412
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.97 E-value=23 Score=29.18 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=25.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGC 343 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 343 (604)
...|.-..|..+|++|++.|-+||. +..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667899999999999999986 55566543
No 413
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.85 E-value=28 Score=28.70 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=25.1
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 044872 108 NEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTAC 141 (604)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 141 (604)
..|.-.+|-.+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346677899999999999998874 66676654
No 414
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.19 E-value=2.5e+02 Score=25.64 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.+..++.+.+.+...+|+...++-++ -+|. ..+-..++..++-.|++++|..-++...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34456667777778888887777666 3453 3455566677788888888877666544
No 415
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=44.01 E-value=50 Score=30.13 Aligned_cols=56 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
....++.+.+.+++.+++++-|+....|..++..-.++|+.+.|.+.+.+..+.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 35678999999999999999999999999999999999999999999999987544
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.21 E-value=3.6e+02 Score=27.04 Aligned_cols=89 Identities=19% Similarity=0.123 Sum_probs=54.1
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCc--hHHHHHHHHHHh-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPM--IEHYGCMVDLLG-RSGQLDEAHELIKSMPM--EPN------AIVWGALL 408 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--~p~------~~~~~~ll 408 (604)
+..+.+.|.+..|.++.+-+. .+.|+ +.....+|+.|+ ++++++--.++++.... .++ ...|+.-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 445677788888888877776 44554 444455567665 67777777777766521 111 12333333
Q ss_pred HHHHhcCCh---------------HHHHHHHHHHHccCC
Q 044872 409 AGCRLHKKT---------------DLAEHVLNQLIALEP 432 (604)
Q Consensus 409 ~~~~~~~~~---------------~~a~~~~~~~~~~~p 432 (604)
.-+ ..++. +.|...+.+++..-|
T Consensus 187 A~~-~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 AYF-RLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHH-HhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 333 33333 788888888887777
No 417
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.96 E-value=95 Score=20.34 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=23.6
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLC 341 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 341 (604)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456777777778888887777777766666654
No 418
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.23 E-value=1.8e+02 Score=23.60 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH-------ccCCCCchhHH----HHHHHHHhcCChHHHHHHHHHHh
Q 044872 402 IVWGALLAGCRLHKKTDLAEHVLNQLI-------ALEPWNSGNYV----LLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 402 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
..+..|-.++...|++++++...+..+ +++.+....|. .-+.++...|+.++|...|+..-
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 344455555666666666555554443 34444333332 34556777889999988887653
No 419
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=42.21 E-value=3.9e+02 Score=27.28 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSMP--MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
...|+.-|...|.+.||...+++++ +-...+++.+++.+.-+.|+-..-..+++....
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4556777889999999999999884 334567889999988888887766666665553
No 420
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=41.83 E-value=3.1e+02 Score=25.93 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=11.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHH
Q 044872 101 AIISGYINEGNLEEAINMFRRL 122 (604)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m 122 (604)
.|+.-|.+.|+.+.|-.++--+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl 205 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVL 205 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHH
Confidence 3444555555555555444444
No 421
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.60 E-value=1.5e+02 Score=22.41 Aligned_cols=65 Identities=12% Similarity=0.052 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHH
Q 044872 49 GVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEA 115 (604)
Q Consensus 49 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 115 (604)
+.+++..+++.|+- +......+-..-...|+.+.|+++++.++ +....|...++++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34556666666532 12222222221124477777777777777 7777777777777777665544
No 422
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.56 E-value=1.5e+02 Score=28.86 Aligned_cols=88 Identities=13% Similarity=0.034 Sum_probs=66.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM----PMEP--NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
-=.+-|.+..++..|...|.+- .-.| +.+.|+.-..+-.-.||+..|+.-..+++.++|.+..+|..=+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3345677888999999998765 1224 345677766777788999999999999999999998888888888888
Q ss_pred cCChHHHHHHHHHH
Q 044872 448 SHKWNDAAKIRSMM 461 (604)
Q Consensus 448 ~g~~~~A~~~~~~m 461 (604)
..++++|....+..
T Consensus 166 Le~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 166 LERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHhhh
Confidence 88866665554433
No 423
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.47 E-value=3e+02 Score=25.63 Aligned_cols=78 Identities=9% Similarity=-0.138 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHhcCC--CCc-ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCcHHHHHHH
Q 044872 280 CGRMAQACKVFREMKD--KDQ-VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVG-LLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~ 355 (604)
...++.|...|.+... |++ .-|+.-+..+.+..+++.+..--.+.++ +.||.+--.. +..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3445555555444332 333 2234444455555555555554444444 4455432222 22233344445555544
Q ss_pred HHHc
Q 044872 356 FNSM 359 (604)
Q Consensus 356 ~~~~ 359 (604)
+...
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 4433
No 424
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.18 E-value=2.1e+02 Score=25.28 Aligned_cols=27 Identities=30% Similarity=0.430 Sum_probs=18.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 408 LAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 408 l~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+..|.+.|.+++|.+++++..+ +|++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 3457777777777777777776 55443
No 425
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=40.81 E-value=3.6e+02 Score=26.44 Aligned_cols=128 Identities=9% Similarity=0.113 Sum_probs=80.6
Q ss_pred CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc------cCcHHHHHHHHHHchhhcCCCCch
Q 044872 296 KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH------AGLVDEGRQFFNSMSRVFSLTPMI 369 (604)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~------~g~~~~a~~~~~~~~~~~~~~p~~ 369 (604)
.|...|+- +-+++++.++++....+. |........|.+|-- .-++..-..+|+.+.. +.|++
T Consensus 262 QDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSP 329 (415)
T COG4941 262 QDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSP 329 (415)
T ss_pred cchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCC
Confidence 45566654 336788889999888775 888877777765532 3467777777777763 34543
Q ss_pred H-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 370 E-HYGCMVDLLGRSGQLDEAHELIKSMPMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 370 ~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
. +.|-- -+++...-.+.++..++.+...|. ...+..-..-+.+.|..++|...|++.+.+.++...
T Consensus 330 vV~LNRA-VAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 330 VVTLNRA-VALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred eEeehHH-HHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 3 23322 233344445666777766633321 223444455578899999999999999988776543
No 426
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.67 E-value=1.6e+02 Score=22.41 Aligned_cols=62 Identities=13% Similarity=-0.008 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CchhHHHHHHHHHhcCChH-HHHHHHHHH
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW--NSGNYVLLSNIYSASHKWN-DAAKIRSMM 461 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~A~~~~~~m 461 (604)
|....-.+...+...|+++.|.+.+-.+++.+|+ +..+-..|+.++.-.|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4456667777888888888888888888877654 3566677777777777643 555555554
No 427
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=40.66 E-value=56 Score=31.25 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=31.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLL 340 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 340 (604)
-|+..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888888999999999999999988765556665443
No 428
>PHA03100 ankyrin repeat protein; Provisional
Probab=40.57 E-value=4.4e+02 Score=27.39 Aligned_cols=239 Identities=10% Similarity=0.075 Sum_probs=113.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHH-----HHhcCChHHHHHHhccCCC---CCcccHHHHHH
Q 044872 35 FVLKACAREHDFQLGVRSHSLIVKAGLDCDEFV--KTSLLNL-----YVHCGYLADALKVFDDIPD---KNVVSWTAIIS 104 (604)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~-----~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 104 (604)
+.+......++.+. .+.+++.|..++... ....+.. ....|..+-+.-+++.-.. +|...++.|..
T Consensus 37 t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~ 112 (480)
T PHA03100 37 LPLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY 112 (480)
T ss_pred hhhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH
Confidence 44555566677544 444455666554332 2233444 5566777766666665333 23334445544
Q ss_pred HHH-hCCChhHHHHHHHHHHHCCCCCChhh--HHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHH
Q 044872 105 GYI-NEGNLEEAINMFRRLLHRGLKPDSFS--IVRVLTACTQLG--DLSTAKWIHGYVNEAGKGRNVF--VATSLVDLYA 177 (604)
Q Consensus 105 ~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~ 177 (604)
+.. ..|+. ++++.+.+.|..++... -.+.+..++..| +.+ +.+.+.+.|..++.. ...+-+...+
T Consensus 113 A~~~~~~~~----~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~ 184 (480)
T PHA03100 113 AISKKSNSY----SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAV 184 (480)
T ss_pred HHhcccChH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHH
Confidence 432 44443 34445555665543321 123444444555 444 444455566554322 1233455667
Q ss_pred hcCCHHHHHHHHccCCCCCcc---h-----HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccC
Q 044872 178 KCGNMEKARRVFDQMPEKDIV---S-----WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYY---TMVGVLSACASLG 246 (604)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~---~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~ 246 (604)
..|+.+-+.-+++.-..++.. . +.+.+...+..|. ...++.+.+.+.|..++.. -.+.+. ..+..|
T Consensus 185 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~-~A~~~~ 261 (480)
T PHA03100 185 EKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH-YAVYNN 261 (480)
T ss_pred HhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH-HHHHcC
Confidence 777877777777654433211 1 1233333344444 1123444455555554322 222333 333445
Q ss_pred chHHHHHHHHHHHHcCCCCchhH--HHHHHHHHHhcCCHHHHHHHHHh
Q 044872 247 ALELGVWASSFMERNEFLSNPVL--GTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
+.+ +.+.+++.|..++... ..+-+....+.++.+-+..+++.
T Consensus 262 ~~~----iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~ 305 (480)
T PHA03100 262 NPE----FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 305 (480)
T ss_pred CHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence 544 4444555565443221 11223334556776666666654
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.13 E-value=2.1e+02 Score=23.49 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 250 LGVWASSFMERNEFLSN-PVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
.+..+|..|...|+... ...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66667777766665443 45566677777778888888887764
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.03 E-value=1e+02 Score=23.66 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=19.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 406 ALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
.+.......|+.++|...+++++++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444567889999999999888764
No 431
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.08 E-value=2e+02 Score=22.89 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 044872 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 325 (604)
...++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-++-. .+.|-.+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345677777777766653 233333333445667788888844444445577777766544 46677777777777666
Q ss_pred HCCCCCCHHHH
Q 044872 326 KCGIQPNGNTF 336 (604)
Q Consensus 326 ~~g~~p~~~t~ 336 (604)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 554 3433333
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.94 E-value=1.1e+02 Score=20.02 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=16.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSFSIVRVL 138 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 138 (604)
.+.|-..++..++++|.+.|+..+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34455555555555555555555544444443
No 433
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=38.88 E-value=54 Score=31.35 Aligned_cols=36 Identities=11% Similarity=0.308 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhH
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSI 134 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 134 (604)
||..|....+.|++++|+.++++..+.|+.--..||
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556666666666666666666666666654333333
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.44 E-value=67 Score=22.45 Aligned_cols=27 Identities=15% Similarity=0.406 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.-...++.++...|++++|.++.+.+.
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333445555555555555555555544
No 435
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=38.07 E-value=46 Score=31.70 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=24.3
Q ss_pred hcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 381 RSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
+.|+.++|..+|+.. ...|+.. ...-+..-.-.+++.-+|-++|-+++.+.|.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 345555555555443 2233221 2222222223344455555555555555555543
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=37.81 E-value=2.1e+02 Score=31.22 Aligned_cols=99 Identities=12% Similarity=0.088 Sum_probs=50.5
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHhccCcHHHHHHHHHHchhhc-CCCCc
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNT----------FVGLLCGCTHAGLVDEGRQFFNSMSRVF-SLTPM 368 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----------~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~ 368 (604)
+-..++..|....+++..+++.+.+.+ -||..- |.-.++---+.|+-++|....-.+.++. .+.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 344556667777777777777777776 343321 1122222234566777776665554432 34455
Q ss_pred hHH-----HHHHH--HHHhhcCCHHHHHHHHHhC-CCCCCH
Q 044872 369 IEH-----YGCMV--DLLGRSGQLDEAHELIKSM-PMEPNA 401 (604)
Q Consensus 369 ~~~-----~~~li--~~~~~~g~~~~A~~~~~~~-~~~p~~ 401 (604)
... |.-+. ..|..++..+.|.++|++. ..+|..
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~ 320 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE 320 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh
Confidence 432 11110 1223344555666666665 445543
No 437
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.29 E-value=2.9e+02 Score=24.31 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHHHHHhccCcHHHHHHHHHHchh
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
.-|.-|...|+++.+...|..+..
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 344556666777777666665554
No 438
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=36.62 E-value=4.3e+02 Score=26.07 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKV-AFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 350 (604)
.+.+..++.++.+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 345555665555555555554444333344444444443332222 33444444443 88888888888888777666
Q ss_pred HHHHHHHHchh
Q 044872 351 EGRQFFNSMSR 361 (604)
Q Consensus 351 ~a~~~~~~~~~ 361 (604)
.....++.+..
T Consensus 248 ~~~~~i~~~L~ 258 (340)
T PF12069_consen 248 LVAILIDALLQ 258 (340)
T ss_pred HHHHHHHHHhc
Confidence 66664555554
No 439
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.59 E-value=4.5e+02 Score=26.36 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=72.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHccC---CCC----
Q 044872 374 CMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGA------------LLAGCRLHKKTDLAEHVLNQLIALE---PWN---- 434 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~---p~~---- 434 (604)
.|...+..+|++++|.+++.+.+++ ||.+ =++.|...+|+-.|--+-+++.... |+-
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4556778899999999999988543 2222 2356778889999888888775422 321
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECC
Q 044872 435 SGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDG 479 (604)
Q Consensus 435 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~ 479 (604)
...|..+..+....+.+=++-+.++..-+.|-.+....-|+.+-.
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 247888888888999999999999998876654443334765543
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=36.02 E-value=1.5e+02 Score=25.10 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=27.4
Q ss_pred HHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 121 RLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGN 181 (604)
Q Consensus 121 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (604)
.+.+.|++++.. =..++..+...++.-.|..+|+.+.+.+...+..|--.-++.+...|-
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 334444443322 123344444444445556666666555544443333334455555553
No 441
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=35.55 E-value=5.9e+02 Score=27.39 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=40.9
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV 376 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 376 (604)
+...|..-+.-+...++.. ....+++...-.-.+......++..|.+.|..+.+.++.+.+-.+
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-------------- 434 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR-------------- 434 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH--------------
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------
Confidence 3344555554444333222 444444444322335566777888888888888888877766543
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc--CCCCchhHHHHHHHH--HhcCC
Q 044872 377 DLLGRSGQLDEAHELIKSMPME--PNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL--EPWNSGNYVLLSNIY--SASHK 450 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~--~~~g~ 450 (604)
+.+.|++.+|+..+-+.+.. -+..+|. ++..|...|... ...+.+.+..- -.+.-..|..+-+.| .+.|+
T Consensus 435 --~~~~~~~g~AL~~~~ra~d~~~v~~i~~~-ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~ 510 (566)
T PF07575_consen 435 --LLKEGRYGEALSWFIRAGDYSLVTRIADR-LLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGD 510 (566)
T ss_dssp --HHHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred --HHHCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhh
Confidence 23345555555555554211 1222332 334444444321 12222211110 001112233333333 34578
Q ss_pred hHHHHHHHHHHhhCCCccCCceeEEEE
Q 044872 451 WNDAAKIRSMMGDKGIQKIRGCSWVEV 477 (604)
Q Consensus 451 ~~~A~~~~~~m~~~~~~~~~~~s~~~~ 477 (604)
+.+|.+.+-.+.+..+- |...|..+
T Consensus 511 ~~~Aa~~Lv~Ll~~~~~--Pk~f~~~L 535 (566)
T PF07575_consen 511 FREAASLLVSLLKSPIA--PKSFWPLL 535 (566)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHCCCCC--cHHHHHHH
Confidence 88887776666654443 45566543
No 442
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=35.41 E-value=7.5e+02 Score=28.52 Aligned_cols=127 Identities=12% Similarity=0.080 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCch--------HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVF---SLTPMI--------EHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAI- 402 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~- 402 (604)
+...++-..+..|.++-+.+..+.+.+.+ ..+.+. ..|-.=+.++.....++++.+.+...+ |...
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 767 (932)
T PRK13184 690 ALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD--PTLIL 767 (932)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC--HHHHH
Confidence 33333344456777777766666555321 111111 112222445555566677766555553 2222
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 403 -VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS---GNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 403 -~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+..+..-+..+++.+.-..+.+.+....+... .....-+.+|.-..+|++|.+++..-..
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 768 YAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 334444445556666666666665554332221 1223345667778889999998865543
No 443
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.08 E-value=4.1e+02 Score=25.40 Aligned_cols=134 Identities=15% Similarity=0.260 Sum_probs=75.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhh-------HHHHHHHHhcCCChHHHHHHHHH----HHHhCCCCChhHHH
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFS-------IVRVLTACTQLGDLSTAKWIHGY----VNEAGKGRNVFVAT 170 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~g~~~~a~~~~~~----~~~~g~~~~~~~~~ 170 (604)
+.+-..+.+++++|+..+.+.+..|+..|..+ ...+.+.|...|+...-.+.... |.+..-+..+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455667788888888888888887666544 44566677777776554333222 22222222344455
Q ss_pred HHHHHHHhc-CCHHHHHHHHccCCC---C-C-----cchHHHHHHHHHhCCCchHHHHHHHHH----HHCCCCCCHHHH
Q 044872 171 SLVDLYAKC-GNMEKARRVFDQMPE---K-D-----IVSWSSMIQGYASNGFPKEALDMFYNM----QRENLKPEYYTM 235 (604)
Q Consensus 171 ~li~~y~~~-g~~~~A~~~~~~~~~---~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~ 235 (604)
+|+..+... ..++.-.++.....+ + + ...-.-+|..+.+.|.+.+|+.+...+ .+-.-+|+..+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 555554332 234444444433322 0 0 112235788899999999999876544 344445655544
No 444
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.98 E-value=5.1e+02 Score=26.51 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG 328 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 328 (604)
.|+.-|.-.|++.+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.++++....|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4555666667777777666665544 33455666666666555555555555544443
No 445
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.93 E-value=6e+02 Score=27.26 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=26.7
Q ss_pred hhhcCCchHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHccC-----ChHHHHHHHHHHHHhC
Q 044872 5 FVSNDCFQHAIEFYNSMRN-------EGFLPTNFTFPFVLKACAREH-----DFQLGVRSHSLIVKAG 60 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g 60 (604)
+....+.+.|+..|..+.+ .| +.....-+-.+|.+.. +...|..++....+.|
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 4455566666666666655 33 2233344444443321 3445666666555554
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.37 E-value=66 Score=22.50 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
.+|.+|.+.|++++|.++.+++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467777788888888877777654
No 447
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=34.31 E-value=28 Score=17.93 Aligned_cols=11 Identities=55% Similarity=0.764 Sum_probs=8.3
Q ss_pred ChhHHHHHHhh
Q 044872 566 DCHEAIKLISK 576 (604)
Q Consensus 566 ~~~~~~~~~s~ 576 (604)
..|+++|+||.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 47888888874
No 448
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.26 E-value=5.7e+02 Score=26.79 Aligned_cols=157 Identities=10% Similarity=0.083 Sum_probs=96.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMY 277 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 277 (604)
...-+++..+.++-.+.-...+..+|..-| -+...|..++..|... ..+.-..+++++++..+. |+....-|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 345567777777777777777777887754 3566777777777776 455666777777777655 566666777777
Q ss_pred HhcCCHHHHHHHHHhcCCCCc---------ccHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccC
Q 044872 278 AKCGRMAQACKVFREMKDKDQ---------VVWNAVVSGLSMNGYVKVAFGVFGQLEK-CGIQPNGNTFVGLLCGCTHAG 347 (604)
Q Consensus 278 ~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g 347 (604)
-+ ++.+.+...|..+..+=+ ..|..++..- ..+.+.-+.+..+... .|..--.+.+.-+-.-|....
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 76 788888888877643211 1454444311 2344555555555543 233333344455555666677
Q ss_pred cHHHHHHHHHHchh
Q 044872 348 LVDEGRQFFNSMSR 361 (604)
Q Consensus 348 ~~~~a~~~~~~~~~ 361 (604)
++++|++++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777766554
No 449
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.26 E-value=1.4e+02 Score=26.06 Aligned_cols=41 Identities=10% Similarity=0.034 Sum_probs=17.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACT 142 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 142 (604)
++..+...++.-.|.++++.+.+.+..++..|....|..+.
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~ 71 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLL 71 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHH
Confidence 33333333344445555555554444444444333333333
No 450
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.22 E-value=4.4e+02 Score=25.54 Aligned_cols=86 Identities=15% Similarity=0.054 Sum_probs=56.4
Q ss_pred ccCcHHHHHHHHHHchhhcCC---CCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSL---TPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
..+-.+++.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+..-..+.+...
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHH
Confidence 344467888888887753111 33455556666777788887666666666554567778888999988888999888
Q ss_pred HHHHHHHcc
Q 044872 422 HVLNQLIAL 430 (604)
Q Consensus 422 ~~~~~~~~~ 430 (604)
++++.++.-
T Consensus 222 ~~l~~~l~~ 230 (324)
T PF11838_consen 222 RLLDLLLSN 230 (324)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHcCC
Confidence 999988873
No 451
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=34.13 E-value=5.3e+02 Score=26.39 Aligned_cols=237 Identities=8% Similarity=-0.085 Sum_probs=125.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHH
Q 044872 37 LKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAI 116 (604)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 116 (604)
|.++...| ..+...+-...... ++...+..-...+....+......+.+.+..++.......+.++.+.+...-.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~- 119 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAE- 119 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHH-
Confidence 55555555 44555555554432 22222222222222222222355555666666666777788888777765544
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCC
Q 044872 117 NMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKD 196 (604)
Q Consensus 117 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 196 (604)
..+..+.+. ++...-...+.++...+. + ....+...++ .+|..+-..-+.++...++.+..-.+-.-....|
T Consensus 120 ~~L~~~L~~---~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~ 191 (410)
T TIGR02270 120 PWLEPLLAA---SEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDSD 191 (410)
T ss_pred HHHHHHhcC---CChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCC
Confidence 444444432 344444455566655442 2 2222333333 5667777777777777776544444333344566
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
...-..-+.+....|. .+|...+..... .|+..+...+.......+. +.+...+..+.+. ..+-...+.+
T Consensus 192 ~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d-----~~vr~~a~~A 261 (410)
T TIGR02270 192 PEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA-----AATRREALRA 261 (410)
T ss_pred HHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC-----hhhHHHHHHH
Confidence 6666666777777777 667766665332 2222222222323322232 2444444444433 2255667778
Q ss_pred HHhcCCHHHHHHHHHhcCCC
Q 044872 277 YAKCGRMAQACKVFREMKDK 296 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~ 296 (604)
..+.|+...+..+.+.|.+.
T Consensus 262 lG~lg~p~av~~L~~~l~d~ 281 (410)
T TIGR02270 262 VGLVGDVEAAPWCLEAMREP 281 (410)
T ss_pred HHHcCCcchHHHHHHHhcCc
Confidence 88888888888888777654
No 452
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.80 E-value=90 Score=29.94 Aligned_cols=75 Identities=5% Similarity=0.026 Sum_probs=47.6
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGA-LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL 441 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (604)
.|+..|...+.--.+.|.+.+...++.+. ...| |+..|-. ----+..+++++.+..++.+.+.++|++|..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34555554444444455666666666665 3344 4446643 22235678899999999999999999888766543
No 453
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.46 E-value=4.7e+02 Score=25.58 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=12.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNS 358 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~ 358 (604)
.......|++.|+.+.|.+.+..
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33444456666666666655553
No 454
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=6.3e+02 Score=26.91 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=36.8
Q ss_pred HHHhcCChHHHHHHHHHHHccCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHh
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPW-NSGNYVLLSNIYS-ASHKWNDAAKIRSMMG 462 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 462 (604)
...+.|-+.-|.+..+-+++++|. ||.....+++.|+ ++.+|+--+++++...
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455677777788877777788877 7777777777775 5556666666666553
No 455
>PF15161 Neuropep_like: Neuropeptide-like
Probab=33.02 E-value=27 Score=23.36 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=12.8
Q ss_pred ecccccCChhHHHHHHhhh
Q 044872 559 KNLRVCGDCHEAIKLISKI 577 (604)
Q Consensus 559 ~~l~~c~~~~~~~~~~s~~ 577 (604)
-.-|-|.|||.+. |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 3568899999775 55543
No 456
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.95 E-value=4.3e+02 Score=24.98 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=108.6
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCchHHHHHHHHHHHH---cCCC--CchhHHHHHHHHHHhc
Q 044872 209 SNGFPKEALDMFYNMQRENLKPEY---YTMVGVLSACASLGALELGVWASSFMER---NEFL--SNPVLGTTLIDMYAKC 280 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~--~~~~~~~~li~~~~~~ 280 (604)
+...+++|+.-|++..+..-.-.. ..+..++....+.+++++....+.+++. +.+. -+....|++++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445789999999998874222223 3445678888899999998888877753 2222 2345667888877777
Q ss_pred CCHHHHHHHHHhcCC-----CCcccH----HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CH-------HHHHHHH
Q 044872 281 GRMAQACKVFREMKD-----KDQVVW----NAVVSGLSMNGYVKVAFGVFGQLEKCGIQP----NG-------NTFVGLL 340 (604)
Q Consensus 281 g~~~~A~~~~~~~~~-----~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~-------~t~~~ll 340 (604)
.+.+--..+++.-.+ +|...| +.+...|...|.+.+-.++++++..+--.- |. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 777766666654332 343333 456677777888888888888886642111 11 1344445
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHH----HHHHhhcCCHHHHH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCM----VDLLGRSGQLDEAH 389 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~ 389 (604)
..|....+-..-..+++....-..-.|.+-....+ ..+..+.|++++|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 55666666666666666554322334443332221 12344567777664
No 457
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.79 E-value=1.2e+02 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHhCCCchHHHHHHHHH
Q 044872 203 MIQGYASNGFPKEALDMFYNM 223 (604)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m 223 (604)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555555555555555544
No 458
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.68 E-value=4e+02 Score=24.52 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=7.7
Q ss_pred HhhcCCHHHHHHHHHhC
Q 044872 379 LGRSGQLDEAHELIKSM 395 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~ 395 (604)
....|+.++|.+.++..
T Consensus 74 ~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 74 AIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHhccHHHHHHHHHHh
Confidence 34444444444444444
No 459
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.11 E-value=5.2e+02 Score=27.87 Aligned_cols=85 Identities=12% Similarity=-0.027 Sum_probs=59.8
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-C----H--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCCh
Q 044872 380 GRSGQLDEAHELIKSM-PMEP-N----A--IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~p-~----~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 451 (604)
.+..++..+.++|+.- ..-| | . .....|--.|....+.|.|.++++++-+.+|.++..-..+..+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3456677777776543 2111 1 1 13445555567778889999999999888888888777788888888888
Q ss_pred HHHHHHHHHHhhC
Q 044872 452 NDAAKIRSMMGDK 464 (604)
Q Consensus 452 ~~A~~~~~~m~~~ 464 (604)
++|..........
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776643
No 460
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=31.51 E-value=1.8e+02 Score=30.78 Aligned_cols=133 Identities=16% Similarity=0.085 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHhcc--CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCC--CHHH
Q 044872 330 QPNGNTFVGLLCGCTHA--GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR-SGQLDEAHELIKSM-PMEP--NAIV 403 (604)
Q Consensus 330 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~-~~~p--~~~~ 403 (604)
.|+..|...++.-.... ...+-|-.++-.|.. .+.|--...| +..+|.| .|+...|.+.+... ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666666655443332 223445555555542 3333222221 2345555 68888888877665 3333 2234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 404 WGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 404 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
...|.+...+.|-...|-.++.+.+.+....+-++..++++|....+.+.|.+.|+...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44566666777778889999999988887778899999999999999999999999887654
No 461
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=31.44 E-value=22 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=16.8
Q ss_pred ceEEEecCCccceeccccccCC
Q 044872 580 REIIVRDNNRFHCFIEGSCSCK 601 (604)
Q Consensus 580 ~~~~~~~~~~~h~~~~g~~s~~ 601 (604)
+.|=+.|.+..|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 3566889999999999997643
No 462
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.72 E-value=5.7e+02 Score=25.75 Aligned_cols=25 Identities=8% Similarity=-0.213 Sum_probs=13.7
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~ 332 (604)
+.+.+++..|.++|+++......|+
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChh
Confidence 3445566666666666655443333
No 463
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.43 E-value=4e+02 Score=23.84 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=56.6
Q ss_pred ccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC-------
Q 044872 190 DQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNE------- 262 (604)
Q Consensus 190 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 262 (604)
++-+++-.+.|-....+-++.-+.+++-+.|- ...=.+++-.|.+..++.+++.+++.+.+..
T Consensus 100 kd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LK 169 (233)
T PF14669_consen 100 KDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLK 169 (233)
T ss_pred hcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33333445556666666665555554433221 1122356667778888888888888876532
Q ss_pred -------CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 263 -------FLSNPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 263 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
..+--.+.|.....+.++|.++.|..++++
T Consensus 170 GL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 170 GLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred CccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 223345667777788888888888888774
No 464
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=29.93 E-value=4.6e+02 Score=24.37 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC----------------CCccc
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD----------------KDQVV 300 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~ 300 (604)
..+--|.+..+..--.++.+.....++..+..-..+++ +...|++..|...++.-.. |.+..
T Consensus 164 CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~ 241 (333)
T KOG0991|consen 164 CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLL 241 (333)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHH
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
...|+..+.. +++++|.+++.++.+.|..|....-+.+
T Consensus 242 v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 242 VKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 465
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=29.63 E-value=7.6e+02 Score=26.85 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=25.0
Q ss_pred cCcHHHHHHHHHHchhhcCCCCc-----hHHHHHHHH-H-HhhcCCHHHHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPM-----IEHYGCMVD-L-LGRSGQLDEAHELIK 393 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~-~-~~~~g~~~~A~~~~~ 393 (604)
.+++..+....+.+.+...-.|+ ...+..++. + +-..|+++.|...|.
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 56677777777766643222222 112222221 1 224577888888886
No 466
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.32 E-value=1.9e+02 Score=27.31 Aligned_cols=59 Identities=20% Similarity=0.103 Sum_probs=49.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 406 ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+=+++.+.++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-+....+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 33446788889999999999999999999888888889999999999888888876554
No 467
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=29.23 E-value=2.9e+02 Score=21.84 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=14.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 044872 101 AIISGYINEGNLEEAINMFRRLL 123 (604)
Q Consensus 101 ~li~~~~~~g~~~~A~~~~~~m~ 123 (604)
.++..|...+++++|.+.+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34556666666666666666653
No 468
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=28.93 E-value=6.4e+02 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCC
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSMP 396 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~~ 396 (604)
+-...+.++++.|+...+--+++.|.
T Consensus 254 vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 34455566677777766666666664
No 469
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=28.91 E-value=2.9e+02 Score=21.80 Aligned_cols=23 Identities=26% Similarity=0.467 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHHH
Q 044872 202 SMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 202 ~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
.++..|...+++++|..-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555666666666666665553
No 470
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.90 E-value=3.3e+02 Score=22.38 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=31.2
Q ss_pred HHHHHHHHHc--cCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 044872 420 AEHVLNQLIA--LEPWNSGNYVLLSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 420 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 459 (604)
..++|..|.+ ++-.-+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777764 445556778888999999999999999886
No 471
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.20 E-value=3.2e+02 Score=24.24 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044872 376 VDLLGRSGQLDEAHELIKSMPMEPNAIVWGAL 407 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 407 (604)
+-.|.+.|.+++|.+++++.-..|+......-
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~k 149 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLRMK 149 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHHHH
Confidence 34567777777777777776324554443333
No 472
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.90 E-value=1.1e+02 Score=31.17 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=48.7
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.....++++.|...+.++++++|+....|..-+.++.+.+++..|..=..+..+..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 34567789999999999999999998888888899999999999998888887754
No 473
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=27.58 E-value=2.5e+02 Score=20.67 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=8.3
Q ss_pred HHHHhcCChHHHHHHhcc
Q 044872 73 NLYVHCGYLADALKVFDD 90 (604)
Q Consensus 73 ~~~~~~g~~~~A~~~f~~ 90 (604)
...+..|+.+-+..+++.
T Consensus 31 ~~A~~~~~~~~~~~Ll~~ 48 (89)
T PF12796_consen 31 HYAAENGNLEIVKLLLEN 48 (89)
T ss_dssp HHHHHTTTHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 333444555444444443
No 474
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=27.49 E-value=3e+02 Score=28.64 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--------CchhHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW--------NSGNYVL 440 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--------~~~~~~~ 440 (604)
+..|-..+.-|...+++++|.++.+..+ +...|..|......+.+..-++.+|..+.+.+.- -+..-..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3446667778888999999999988765 5678888888888888888888877776654321 0111223
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 044872 441 LSNIYSASHKWNDAAKIRS 459 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~ 459 (604)
++....-.|+..||.-++.
T Consensus 650 mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHhccchhhhHHHH
Confidence 4444455677777777654
No 475
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.42 E-value=2e+02 Score=30.90 Aligned_cols=95 Identities=15% Similarity=0.131 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 044872 95 NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD 174 (604)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (604)
+...|..-+..+...++.. ....+.++.+-.-.+......++..|.+.|-.+.+..+...+-..-.. ..-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 4455776666665544332 555566655534456667778888888888888888887765443221 233555566
Q ss_pred HHHhcCCHHHHHHHHccCC
Q 044872 175 LYAKCGNMEKARRVFDQMP 193 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~ 193 (604)
.+.++|+......+-+.+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHH----------------
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6788888776665555443
No 476
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=27.12 E-value=1.4e+02 Score=23.79 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=27.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGD 146 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 146 (604)
++..+...+..-.|-++++.+.+.+..++..|....|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444555555566677777777766665666665555555555443
No 477
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.90 E-value=1.2e+02 Score=22.04 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=28.3
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAG 347 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 347 (604)
...|+.+.+.+++++....|..|.......+..+....|
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 347888899999999998888888776666665554443
No 478
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.63 E-value=2.1e+02 Score=21.56 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=25.3
Q ss_pred hcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhH
Q 044872 77 HCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEE 114 (604)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 114 (604)
...+.+.|.++++.++.+...+|..+..++-..|...-
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 44556677777777777777777777777766665443
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.52 E-value=3.8e+02 Score=28.96 Aligned_cols=47 Identities=9% Similarity=-0.045 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCcH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKC--GIQPNGNTFVGLLCGCTHAGLV 349 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~ 349 (604)
+++.+|..+|++..+.++++..... |-+.=...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666677777777777666666542 2111223455555555555543
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.33 E-value=9.6e+02 Score=27.17 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=86.8
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
....||+++.|.+.-..+- |..+|..|+..-..+|+.+-|...|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3457899999988776665 456899999999999999999999988765 33333346667888777666
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
-..+..+ .|.. .....-.-.|+.++=.++++..+..|- .|. .-..+|.-++|.++.++.-.
T Consensus 721 ~~iae~r----~D~~---~~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDAT---GQFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhH---HHHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 5544321 2221 111111236888888889888865442 222 23468888899998888764
No 481
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.31 E-value=4.8e+02 Score=23.39 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=24.8
Q ss_pred HHhcCCHHHHHHHHHhcCC------CCcccHHHHHH-HHHhCCC--HHHHHHHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKD------KDQVVWNAVVS-GLSMNGY--VKVAFGVFGQLEK 326 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~ 326 (604)
....|++++|..-++++.+ +-...|..+.. +++.++. +-+|.-++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 3445666666666655542 12334444444 5555543 3355555554443
No 482
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=26.09 E-value=6.9e+02 Score=25.21 Aligned_cols=55 Identities=15% Similarity=0.024 Sum_probs=37.7
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCChh--hHHHHHHHHh--cCCChHHHHHHHHHHHHh
Q 044872 105 GYINEGNLEEAINMFRRLLHRGLKPDSF--SIVRVLTACT--QLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 105 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 160 (604)
.+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445788999999999999887 555554 3444444443 456777888888876654
No 483
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.69 E-value=3.1e+02 Score=26.49 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 044872 172 LVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQR 225 (604)
Q Consensus 172 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (604)
++..+.+.+++....+.+..+. .+..-...+......|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555544444442 233344556677778888888888777654
No 484
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=25.10 E-value=5.6e+02 Score=26.12 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=48.3
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH--------HHHhcCCHHHHHHHHccCCC---
Q 044872 126 GLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD--------LYAKCGNMEKARRVFDQMPE--- 194 (604)
Q Consensus 126 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~--------~y~~~g~~~~A~~~~~~~~~--- 194 (604)
.+.||.++.+.+.+.++..-..+-...+++...+.+ .|=...+-+||- .-.+...-+++.++++.|+.
T Consensus 178 kitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~ 256 (669)
T KOG3636|consen 178 KITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLS 256 (669)
T ss_pred ccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcc
Confidence 467788887777777776666777777777777655 222222222221 11234455677777777764
Q ss_pred -CCcchHHHHHHHHHh
Q 044872 195 -KDIVSWSSMIQGYAS 209 (604)
Q Consensus 195 -~~~~~~~~li~~~~~ 209 (604)
.|+.-+-.|...|+.
T Consensus 257 ~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 257 VEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccchhHHHHHHHHhh
Confidence 355555555555543
No 485
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=25.03 E-value=3.6e+02 Score=27.70 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHc-----cCCCCchhHHHH
Q 044872 396 PMEPNAIVWGALLAG-CRLHKKTDLAEHVLNQLIA-----LEPWNSGNYVLL 441 (604)
Q Consensus 396 ~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~l 441 (604)
|..||..-|-..-.+ |+..|+++...++|+.++. ++|-++.+...+
T Consensus 331 psh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssl 382 (615)
T KOG0508|consen 331 PSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSL 382 (615)
T ss_pred CCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHH
Confidence 455666554443333 7788888888888887764 345555554444
No 486
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.99 E-value=3.5e+02 Score=22.86 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=28.1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCH
Q 044872 322 GQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 322 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 385 (604)
+.+.+.|++++.. -..++..+...+..-.|.++++.+.+. +..-+..|.-.-++.+...|-+
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCCE
Confidence 3444455544432 123334444444445666666666543 3333333222233556666654
No 487
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.91 E-value=6.5e+02 Score=24.46 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=51.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHh----------hcCCHHH
Q 044872 318 FGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLG----------RSGQLDE 387 (604)
Q Consensus 318 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----------~~g~~~~ 387 (604)
.++++.|.+.++.|.-..|..+.-.+++.=.+...+.+|+.+..+ ... +..|+..|+ -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQR-----FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhh-----hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 568888888899999988888877788888888899999988753 112 333333322 1477777
Q ss_pred HHHHHHhCC
Q 044872 388 AHELIKSMP 396 (604)
Q Consensus 388 A~~~~~~~~ 396 (604)
-+++++..|
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777654
No 488
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=24.67 E-value=3.7e+02 Score=28.97 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=39.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHH------HHHHHHccCC-CCCcchHHHHHHH
Q 044872 136 RVLTACTQLGDLSTAKWIHGYVNEAG--KGRNVFVATSLVDLYAKCGNME------KARRVFDQMP-EKDIVSWSSMIQG 206 (604)
Q Consensus 136 ~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~------~A~~~~~~~~-~~~~~~~~~li~~ 206 (604)
+++.+|...|++..+.++++...... -..=...+|..++-..+.|.++ .|.+.+++.. .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67777888888877777777776543 1222334555566666666543 2333333322 2344555555544
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.63 E-value=2.6e+02 Score=24.33 Aligned_cols=61 Identities=7% Similarity=-0.017 Sum_probs=34.1
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHH
Q 044872 324 LEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 324 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 386 (604)
+...|++++..-. .++.........-.|.++++.+.+. +...+..|.---++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3455666555322 3333444445556677777777754 44455444444457777777753
No 490
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=24.56 E-value=2.4e+02 Score=20.79 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=22.1
Q ss_pred HhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 044872 76 VHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDS 131 (604)
Q Consensus 76 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 131 (604)
++.|+++-...+++.-...+. -.+ .+...+..|+ .++++.+.+.|..|+.
T Consensus 5 ~~~~~~~~~~~ll~~~~~~~~-~~~-~l~~A~~~~~----~~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 5 AQNGNLEILKFLLEKGADINL-GNT-ALHYAAENGN----LEIVKLLLENGADINS 54 (89)
T ss_dssp HHTTTHHHHHHHHHTTSTTTS-SSB-HHHHHHHTTT----HHHHHHHHHTTTCTT-
T ss_pred HHcCCHHHHHHHHHCcCCCCC-CCC-HHHHHHHcCC----HHHHHHHHHhcccccc
Confidence 345555555555553222222 112 3333344555 3444555556655544
No 491
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.39 E-value=2.7e+02 Score=26.09 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=6.4
Q ss_pred HHHHhCCChhHHHHHH
Q 044872 104 SGYINEGNLEEAINMF 119 (604)
Q Consensus 104 ~~~~~~g~~~~A~~~~ 119 (604)
.+|...|++.+|++-|
T Consensus 18 rl~l~~~~~~~Av~q~ 33 (247)
T PF11817_consen 18 RLYLWLNQPTEAVRQF 33 (247)
T ss_pred HHHHhCCCHHHHHHHH
Confidence 3333444444444333
No 492
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.15 E-value=6.7e+02 Score=24.37 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 044872 152 WIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP 193 (604)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 193 (604)
++++.+...++.|.-+.+.-+.-++.++=.+.+...+++.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 455555555666665555555555555556666666666554
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.87 E-value=5.3e+02 Score=24.75 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHccCCC--Cchh
Q 044872 368 MIEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPNAIVWGA-LLAGCRLHKKTDLAEHVLNQLIALEPW--NSGN 437 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~ 437 (604)
..+.+..+.+-|++.++.+.+.++..+. +.+-|+..... |.-.|....-+++-.+..+.+++.+-+ ...-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 3556667778888888888888777654 44444432222 112233444455666666666665532 1111
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHHHh
Q 044872 438 YVLLSNI-YSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 438 ~~~l~~~-~~~~g~~~~A~~~~~~m~ 462 (604)
|-..-.+ +....++.+|..++....
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 2222112 223345666666655443
No 494
>PF13934 ELYS: Nuclear pore complex assembly
Probab=23.65 E-value=5.8e+02 Score=23.48 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHhcCCCCccc--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHH
Q 044872 280 CGRMAQACKVFREMKDKDQVV--WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
.++++.|...+- +|.+.. ..-++.++...|+.+.|+.+++.+.-.... ......++.+ ...+.+.+|..+-+
T Consensus 91 ~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s--~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSS--PEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCC--HHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 355556655552 332211 123666666677777777777664322111 1222222223 34467777777666
Q ss_pred HchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH
Q 044872 358 SMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNA 401 (604)
Q Consensus 358 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 401 (604)
...+.. ....+..++..+.....-....+.+-.+|..+..
T Consensus 165 ~~~~~~----~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 165 SYPDEL----RRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred hCchhh----hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 554310 1334555554444333222233334444554443
No 495
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.58 E-value=1.4e+02 Score=20.94 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=8.6
Q ss_pred hcCCchHHHHHHHHHHh
Q 044872 7 SNDCFQHAIEFYNSMRN 23 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~ 23 (604)
..|++-+|-++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 44555555555555543
No 496
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.21 E-value=8.7e+02 Score=25.35 Aligned_cols=302 Identities=8% Similarity=-0.067 Sum_probs=0.0
Q ss_pred HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----------------CHHHHH
Q 044872 123 LHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG----------------NMEKAR 186 (604)
Q Consensus 123 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----------------~~~~A~ 186 (604)
+..+..............-...+.++...+.+..+...|.....+.+|.-+..|.+.| +++.+-
T Consensus 9 ktq~~~d~~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~ 88 (696)
T KOG2471|consen 9 KTQAGEDENYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPG 88 (696)
T ss_pred ccccccchhHHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhcccc
Q ss_pred HHHccCCC-CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC
Q 044872 187 RVFDQMPE-KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS 265 (604)
Q Consensus 187 ~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (604)
.+.+.... .+.+.+....-.|.....+.+|+++....... +.|=...+
T Consensus 89 ~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~------------------------------ 137 (696)
T KOG2471|consen 89 DVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSR-TESLESSS------------------------------ 137 (696)
T ss_pred chhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHH------------------------------
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC------CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD------KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
-..+.......|......++|+.+++-+.+ .+.+.-+.-.....+.+....|..-+.- -.|.......-
T Consensus 138 aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~-----a~~k~~~~~yk 212 (696)
T KOG2471|consen 138 AASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFST-----ADLKLELQLYK 212 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchh-----hccchhhhHhh
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH-HHHhhcCCHHHHHHHHHhCCCCCCHH---H--------HHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV-DLLGRSGQLDEAHELIKSMPMEPNAI---V--------WGAL 407 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~p~~~---~--------~~~l 407 (604)
+.++....++..+..-.+... .+..+...+..|= +.+.-.|++.+|.+++...++..... | ||.|
T Consensus 213 Vr~llq~~~Lk~~krevK~vm---n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVM---NIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhh---hhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Q ss_pred HHHHHhcCChHHHHHHHHHHHc------------------cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 408 LAGCRLHKKTDLAEHVLNQLIA------------------LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 408 l~~~~~~~~~~~a~~~~~~~~~------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.-.+.+.|.+..+..+|.++++ ............+-.|...|+.-.|.+.|.+...
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
No 497
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.59 E-value=1.8e+02 Score=21.15 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=29.6
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 044872 207 YASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGA 247 (604)
Q Consensus 207 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (604)
....|+.+.+.+++++....|..|.......+..+....|.
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999988888877766666666555443
No 498
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.58 E-value=1e+02 Score=30.08 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=70.1
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCChHHHHH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 422 (604)
..|.++.|++.|-..++. -+|....|.--..++.+.++...|+.=++.. .+.||.. -|..--.+.+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 455667777777666532 1223344444455667777777777666555 5556654 44444456677888888888
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 423 VLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.++.+.+++-+ ..+-..|-...-..++.++-...+.+.++
T Consensus 204 dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 88888876642 23334455555566666666666555554
No 499
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.46 E-value=1.4e+02 Score=23.62 Aligned_cols=21 Identities=29% Similarity=0.730 Sum_probs=9.9
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 044872 102 IISGYINEGNLEEAINMFRRL 122 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m 122 (604)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444555555555555443
No 500
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.45 E-value=5.8e+02 Score=23.00 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh-HHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN-YVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
..+.++..|...||++.|-++|.-++...+-|... +..=+.++.+.+.-....+.++.|.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 44566666777777777777777776655444332 3333445555555444445555554
Done!