Query 044872
Match_columns 604
No_of_seqs 803 out of 4081
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 13:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044872.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044872hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.5E-41 3.2E-45 359.9 35.6 453 2-465 91-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.9E-36 1.3E-40 323.8 24.1 439 2-447 124-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.1E-26 2.1E-30 230.4 38.5 370 37-450 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 5.2E-28 1.8E-32 250.4 21.4 182 199-381 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-25 9.4E-30 225.5 39.4 352 102-464 5-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.3E-27 4.6E-32 247.4 20.5 184 97-280 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.6E-23 2.6E-27 215.5 30.1 425 32-465 8-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.6E-23 1.9E-27 216.5 28.7 431 4-441 15-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.3E-22 1.8E-26 205.5 33.6 335 95-460 25-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.7E-21 5.9E-26 206.4 31.5 422 30-465 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 8.6E-21 3E-25 196.3 30.2 343 65-434 26-414 (450)
12 3ieg_A DNAJ homolog subfamily 99.8 5.6E-18 1.9E-22 169.0 31.6 324 96-447 3-352 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 8.7E-18 3E-22 167.6 32.6 304 131-464 3-335 (359)
14 1b89_A Protein (clathrin heavy 99.8 2E-19 6.7E-24 177.6 19.2 349 77-464 15-385 (449)
15 3fp2_A TPR repeat-containing p 99.8 1.4E-18 4.8E-23 183.9 24.5 357 96-465 25-408 (537)
16 2xm6_A Protein corresponding t 99.8 2.5E-16 8.7E-21 164.6 39.0 376 50-447 27-452 (490)
17 3hym_B Cell division cycle pro 99.8 1.9E-17 6.4E-22 163.3 27.9 285 164-451 20-321 (330)
18 2ooe_A Cleavage stimulation fa 99.8 5E-16 1.7E-20 164.1 40.0 410 29-464 12-492 (530)
19 2ooe_A Cleavage stimulation fa 99.8 2.2E-16 7.6E-21 166.8 33.3 396 5-433 22-495 (530)
20 1fch_A Peroxisomal targeting s 99.8 3E-17 1E-21 164.7 23.9 279 177-461 36-356 (368)
21 3hym_B Cell division cycle pro 99.8 1.7E-16 5.9E-21 156.3 28.1 265 195-464 20-299 (330)
22 2xm6_A Protein corresponding t 99.8 6.4E-15 2.2E-19 153.9 40.3 352 94-466 37-434 (490)
23 3mkr_A Coatomer subunit epsilo 99.8 2.2E-16 7.4E-21 152.5 24.8 267 177-457 10-287 (291)
24 1xi4_A Clathrin heavy chain; a 99.8 3.1E-14 1E-18 156.3 44.0 379 33-457 988-1377(1630)
25 1xi4_A Clathrin heavy chain; a 99.8 9.9E-15 3.4E-19 160.1 40.2 397 2-449 992-1415(1630)
26 4eqf_A PEX5-related protein; a 99.7 1E-16 3.5E-21 160.7 22.2 261 196-460 64-352 (365)
27 1fch_A Peroxisomal targeting s 99.7 7.8E-17 2.7E-21 161.6 21.0 280 78-427 38-356 (368)
28 1b89_A Protein (clathrin heavy 99.7 2.7E-16 9.3E-21 155.3 23.2 342 7-395 15-369 (449)
29 4g1t_A Interferon-induced prot 99.7 7.3E-16 2.5E-20 160.3 27.5 383 65-474 51-469 (472)
30 4eqf_A PEX5-related protein; a 99.7 2.6E-16 9E-21 157.7 19.1 231 231-464 64-310 (365)
31 3cv0_A Peroxisome targeting si 99.7 8.7E-16 3E-20 151.0 21.9 260 198-462 22-313 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 1.7E-15 6E-20 146.1 21.6 247 204-465 6-265 (291)
33 4g1t_A Interferon-induced prot 99.7 1.2E-14 4E-19 151.1 26.8 381 29-442 50-471 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 6.9E-17 2.3E-21 171.8 7.5 147 65-211 127-286 (1134)
35 3cv0_A Peroxisome targeting si 99.7 1.4E-14 4.8E-19 142.3 23.5 261 29-293 20-312 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.2E-16 4E-21 170.0 8.4 131 264-395 124-262 (1134)
37 3uq3_A Heat shock protein STI1 99.6 5E-14 1.7E-18 133.2 21.9 208 243-464 16-236 (258)
38 2pl2_A Hypothetical conserved 99.6 5.7E-14 1.9E-18 129.3 19.2 193 264-461 2-211 (217)
39 3uq3_A Heat shock protein STI1 99.6 7.5E-14 2.6E-18 131.9 20.4 234 199-443 7-255 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 5.6E-13 1.9E-17 137.2 25.7 376 36-463 9-420 (452)
41 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-13 4.8E-18 131.6 18.6 241 209-458 17-269 (275)
42 3u4t_A TPR repeat-containing p 99.5 3.4E-13 1.2E-17 128.8 19.8 244 168-449 5-269 (272)
43 3e4b_A ALGK; tetratricopeptide 99.5 1.6E-12 5.3E-17 133.9 22.0 343 102-466 9-389 (452)
44 2ho1_A Type 4 fimbrial biogene 99.5 2.5E-12 8.5E-17 121.2 21.2 197 267-465 37-239 (252)
45 2vq2_A PILW, putative fimbrial 99.5 3.9E-12 1.3E-16 117.2 21.5 197 266-464 7-211 (225)
46 4e6h_A MRNA 3'-END-processing 99.5 1.2E-10 4.2E-15 123.9 35.3 418 11-435 48-575 (679)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 3E-12 1E-16 122.3 20.7 240 108-356 17-269 (275)
48 1ouv_A Conserved hypothetical 99.5 2.2E-11 7.5E-16 116.3 26.0 225 196-466 5-253 (273)
49 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.5E-17 122.2 16.7 196 266-464 22-222 (243)
50 2ho1_A Type 4 fimbrial biogene 99.5 9.3E-12 3.2E-16 117.2 22.3 208 197-439 37-247 (252)
51 3u4t_A TPR repeat-containing p 99.5 8.9E-12 3E-16 118.8 22.4 227 131-361 3-249 (272)
52 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.3E-17 128.1 19.2 242 198-447 98-365 (382)
53 2pl2_A Hypothetical conserved 99.5 3.4E-12 1.2E-16 117.3 18.5 193 95-292 4-210 (217)
54 1ouv_A Conserved hypothetical 99.5 2.5E-11 8.4E-16 116.0 25.2 229 165-434 5-255 (273)
55 2q7f_A YRRB protein; TPR, prot 99.4 2E-12 6.7E-17 121.0 16.6 213 196-447 22-239 (243)
56 3sf4_A G-protein-signaling mod 99.4 2.2E-12 7.7E-17 130.7 18.3 195 269-463 89-335 (406)
57 4a1s_A PINS, partner of inscut 99.4 9.2E-13 3.1E-17 134.1 15.4 265 169-464 51-372 (411)
58 2vq2_A PILW, putative fimbrial 99.4 1.9E-11 6.5E-16 112.6 22.5 207 197-441 8-222 (225)
59 3vtx_A MAMA; tetratricopeptide 99.4 7.1E-12 2.4E-16 111.8 18.7 165 297-465 4-171 (184)
60 3ro2_A PINS homolog, G-protein 99.4 4.6E-12 1.6E-16 124.4 19.1 198 267-464 83-332 (338)
61 3sf4_A G-protein-signaling mod 99.4 1.3E-12 4.5E-17 132.4 14.7 153 300-452 189-364 (406)
62 4abn_A Tetratricopeptide repea 99.4 1.9E-12 6.6E-17 134.0 14.8 207 249-461 85-318 (474)
63 2h6f_A Protein farnesyltransfe 99.4 6.8E-12 2.3E-16 125.2 17.7 225 233-464 98-348 (382)
64 4a1s_A PINS, partner of inscut 99.4 1E-11 3.4E-16 126.3 16.7 133 300-432 225-374 (411)
65 3ro2_A PINS homolog, G-protein 99.3 1.4E-11 4.9E-16 120.9 15.8 99 335-433 225-335 (338)
66 4e6h_A MRNA 3'-END-processing 99.3 2.4E-09 8.2E-14 114.0 33.6 416 48-466 50-572 (679)
67 4gyw_A UDP-N-acetylglucosamine 99.3 1.1E-11 3.8E-16 133.6 14.6 161 298-463 9-173 (723)
68 3ulq_A Response regulator aspa 99.3 4.4E-11 1.5E-15 120.5 18.2 158 203-360 109-291 (383)
69 2ond_A Cleavage stimulation fa 99.3 5.2E-10 1.8E-14 108.8 25.1 183 249-434 81-274 (308)
70 3vtx_A MAMA; tetratricopeptide 99.3 4.3E-11 1.5E-15 106.7 15.8 166 266-435 4-175 (184)
71 2ond_A Cleavage stimulation fa 99.3 2.5E-10 8.5E-15 111.1 22.2 178 214-395 81-267 (308)
72 3nf1_A KLC 1, kinesin light ch 99.3 5.9E-12 2E-16 122.4 10.7 236 197-463 27-306 (311)
73 3ulq_A Response regulator aspa 99.3 3.9E-11 1.3E-15 120.8 16.2 225 238-463 109-367 (383)
74 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.6E-16 119.9 11.1 238 165-433 26-310 (311)
75 1hz4_A MALT regulatory protein 99.3 2.5E-09 8.6E-14 107.0 27.8 258 206-463 23-321 (373)
76 3as5_A MAMA; tetratricopeptide 99.2 2.1E-10 7E-15 101.9 16.3 159 268-463 9-172 (186)
77 4i17_A Hypothetical protein; T 99.2 5.6E-10 1.9E-14 103.2 18.8 203 231-445 6-224 (228)
78 3q15_A PSP28, response regulat 99.2 4.4E-10 1.5E-14 112.9 17.7 220 243-463 112-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.2 9.3E-10 3.2E-14 97.5 17.8 169 232-436 8-179 (186)
80 4abn_A Tetratricopeptide repea 99.2 2.4E-10 8.2E-15 118.2 15.6 178 283-465 84-288 (474)
81 4i17_A Hypothetical protein; T 99.2 6E-10 2.1E-14 103.0 16.6 187 266-464 6-209 (228)
82 1hz4_A MALT regulatory protein 99.1 1.9E-08 6.5E-13 100.5 27.0 257 104-360 22-320 (373)
83 3q15_A PSP28, response regulat 99.1 7.8E-09 2.7E-13 103.7 24.0 227 204-430 108-365 (378)
84 3edt_B KLC 2, kinesin light ch 99.1 1.4E-09 4.6E-14 103.8 14.6 221 243-463 12-280 (283)
85 3qky_A Outer membrane assembly 99.1 1.2E-08 4.2E-13 96.4 20.0 204 266-510 14-247 (261)
86 4gyw_A UDP-N-acetylglucosamine 99.0 8.1E-10 2.8E-14 119.1 12.3 162 266-432 8-176 (723)
87 1qqe_A Vesicular transport pro 99.0 3.9E-09 1.3E-13 101.7 15.9 215 181-434 32-273 (292)
88 1qqe_A Vesicular transport pro 99.0 4.6E-09 1.6E-13 101.2 15.1 202 247-463 32-268 (292)
89 3qky_A Outer membrane assembly 99.0 2.7E-08 9.1E-13 94.0 18.0 202 231-453 14-250 (261)
90 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.5E-08 8.5E-13 91.9 17.0 180 267-466 4-215 (225)
91 4ga2_A E3 SUMO-protein ligase 98.9 5.5E-10 1.9E-14 95.7 5.3 138 308-450 7-149 (150)
92 2fo7_A Synthetic consensus TPR 98.9 1.8E-08 6.3E-13 83.6 14.7 125 338-464 6-132 (136)
93 3edt_B KLC 2, kinesin light ch 98.9 2E-08 6.8E-13 95.6 16.7 196 235-430 46-281 (283)
94 3mv2_B Coatomer subunit epsilo 98.9 7.2E-08 2.4E-12 91.3 19.5 239 177-437 24-289 (310)
95 3mv2_B Coatomer subunit epsilo 98.9 8.6E-08 3E-12 90.7 20.0 239 205-465 21-283 (310)
96 3qou_A Protein YBBN; thioredox 98.9 2.4E-08 8.2E-13 95.8 16.6 175 284-463 103-283 (287)
97 2fo7_A Synthetic consensus TPR 98.9 5.3E-08 1.8E-12 80.8 14.8 131 300-433 3-135 (136)
98 2pzi_A Probable serine/threoni 98.9 5.2E-09 1.8E-13 113.3 9.9 167 278-450 402-583 (681)
99 2r5s_A Uncharacterized protein 98.8 3.4E-08 1.2E-12 87.0 13.0 157 302-463 10-172 (176)
100 3gyz_A Chaperone protein IPGC; 98.8 3E-08 1E-12 84.5 11.4 102 364-465 30-134 (151)
101 2uy1_A Cleavage stimulation fa 98.8 2.5E-06 8.6E-11 88.0 27.9 100 7-124 6-117 (493)
102 4ga2_A E3 SUMO-protein ligase 98.8 8.1E-09 2.8E-13 88.3 7.4 123 339-464 3-129 (150)
103 3rjv_A Putative SEL1 repeat pr 98.8 2.3E-07 7.9E-12 84.4 17.7 162 296-466 16-199 (212)
104 2vsy_A XCC0866; transferase, g 98.8 7.7E-08 2.6E-12 102.1 15.7 158 280-442 2-169 (568)
105 2vgx_A Chaperone SYCD; alterna 98.7 6E-08 2.1E-12 82.6 11.0 101 364-464 15-118 (148)
106 2ifu_A Gamma-SNAP; membrane fu 98.7 3.4E-07 1.2E-11 88.6 17.4 220 210-457 4-254 (307)
107 3urz_A Uncharacterized protein 98.7 2.1E-07 7.1E-12 84.4 14.6 125 304-434 60-190 (208)
108 2pzi_A Probable serine/threoni 98.7 2.2E-07 7.6E-12 100.5 16.9 188 243-437 402-609 (681)
109 4gco_A Protein STI-1; structur 98.7 1.4E-07 4.7E-12 77.8 11.2 99 365-463 8-109 (126)
110 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.1E-07 1.8E-11 81.9 16.2 125 336-465 9-151 (213)
111 2vsy_A XCC0866; transferase, g 98.7 2.2E-07 7.4E-12 98.6 15.3 144 246-395 3-154 (568)
112 2yhc_A BAMD, UPF0169 lipoprote 98.7 5E-07 1.7E-11 83.0 15.6 184 232-436 4-219 (225)
113 4gco_A Protein STI-1; structur 98.7 1.4E-07 4.8E-12 77.8 10.5 114 329-445 8-125 (126)
114 3u3w_A Transcriptional activat 98.7 2.4E-06 8.4E-11 81.9 21.0 160 304-463 81-265 (293)
115 2xcb_A PCRH, regulatory protei 98.7 3.2E-07 1.1E-11 77.4 13.0 101 364-464 12-115 (142)
116 2qfc_A PLCR protein; TPR, HTH, 98.6 6.8E-07 2.3E-11 85.9 16.0 164 300-463 77-265 (293)
117 3urz_A Uncharacterized protein 98.6 2.5E-07 8.6E-12 83.9 12.1 155 305-465 11-187 (208)
118 2r5s_A Uncharacterized protein 98.6 4.5E-07 1.5E-11 79.7 13.4 154 68-224 9-171 (176)
119 3rjv_A Putative SEL1 repeat pr 98.6 2.7E-06 9.4E-11 77.2 18.8 171 252-432 6-199 (212)
120 3dra_A Protein farnesyltransfe 98.6 5E-06 1.7E-10 79.4 20.8 148 312-463 124-286 (306)
121 2ifu_A Gamma-SNAP; membrane fu 98.6 3.1E-07 1.1E-11 89.0 11.7 197 244-462 3-222 (307)
122 1na0_A Designed protein CTPR3; 98.6 9.1E-07 3.1E-11 72.0 12.7 114 334-449 10-125 (125)
123 1a17_A Serine/threonine protei 98.6 1.1E-06 3.8E-11 75.9 13.9 127 335-463 15-145 (166)
124 3qou_A Protein YBBN; thioredox 98.6 3.4E-06 1.1E-10 80.7 18.5 162 129-292 115-280 (287)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.4E-06 8.1E-11 77.5 16.5 144 271-434 10-154 (213)
126 2vyi_A SGTA protein; chaperone 98.5 1E-06 3.6E-11 72.4 12.2 116 334-451 13-130 (131)
127 1p5q_A FKBP52, FK506-binding p 98.5 5.3E-07 1.8E-11 88.5 11.7 126 335-463 149-293 (336)
128 2uy1_A Cleavage stimulation fa 98.5 5.3E-05 1.8E-09 78.1 27.2 336 9-361 28-412 (493)
129 2lni_A Stress-induced-phosphop 98.5 1.2E-06 4.2E-11 72.3 12.3 114 334-450 17-133 (133)
130 2c2l_A CHIP, carboxy terminus 98.5 2.4E-07 8.1E-12 88.4 8.3 190 267-464 4-199 (281)
131 3dra_A Protein farnesyltransfe 98.5 6.4E-05 2.2E-09 71.8 25.1 227 211-443 47-301 (306)
132 3upv_A Heat shock protein STI1 98.5 1.1E-06 3.9E-11 72.1 11.1 96 369-464 4-101 (126)
133 2e2e_A Formate-dependent nitri 98.4 6.1E-07 2.1E-11 78.8 9.3 119 345-465 22-145 (177)
134 3u3w_A Transcriptional activat 98.4 2.9E-05 9.8E-10 74.4 21.8 158 273-430 81-266 (293)
135 4f3v_A ESX-1 secretion system 98.4 3.3E-06 1.1E-10 78.8 14.5 182 279-465 18-238 (282)
136 4f3v_A ESX-1 secretion system 98.4 1E-06 3.5E-11 82.3 10.9 135 303-442 107-248 (282)
137 2kck_A TPR repeat; tetratricop 98.4 1.5E-06 5.1E-11 69.2 10.5 98 369-466 6-108 (112)
138 2qfc_A PLCR protein; TPR, HTH, 98.4 9.8E-06 3.3E-10 77.7 18.2 160 270-429 78-265 (293)
139 1hxi_A PEX5, peroxisome target 98.4 1.3E-06 4.3E-11 71.4 9.5 94 372-465 20-115 (121)
140 1wao_1 Serine/threonine protei 98.4 9.9E-07 3.4E-11 90.9 10.9 116 342-460 15-135 (477)
141 3q49_B STIP1 homology and U bo 98.4 3E-06 1E-10 70.6 12.0 98 367-464 7-106 (137)
142 3sz7_A HSC70 cochaperone (SGT) 98.4 2.3E-06 7.8E-11 74.1 11.1 96 369-464 11-108 (164)
143 1elw_A TPR1-domain of HOP; HOP 98.4 4.2E-06 1.5E-10 67.2 11.7 95 370-464 5-101 (118)
144 2vgx_A Chaperone SYCD; alterna 98.4 7.3E-07 2.5E-11 75.8 7.2 108 329-439 16-127 (148)
145 1na0_A Designed protein CTPR3; 98.3 3.9E-06 1.3E-10 68.1 11.4 96 369-464 9-106 (125)
146 4gcn_A Protein STI-1; structur 98.3 1.3E-06 4.6E-11 71.9 8.3 94 370-463 9-111 (127)
147 3gw4_A Uncharacterized protein 98.3 8.9E-06 3E-10 72.8 14.5 152 311-463 5-175 (203)
148 2lni_A Stress-induced-phosphop 98.3 4.5E-06 1.5E-10 68.8 11.6 98 367-464 14-113 (133)
149 1elw_A TPR1-domain of HOP; HOP 98.3 9.7E-06 3.3E-10 65.0 13.1 110 334-445 5-116 (118)
150 2dba_A Smooth muscle cell asso 98.3 5.9E-06 2E-10 69.6 12.3 95 369-463 28-127 (148)
151 3gyz_A Chaperone protein IPGC; 98.3 3.1E-06 1E-10 71.9 10.1 104 329-435 31-138 (151)
152 2dba_A Smooth muscle cell asso 98.3 1.2E-05 4.1E-10 67.7 13.7 112 333-447 28-145 (148)
153 3gw4_A Uncharacterized protein 98.3 5.1E-06 1.7E-10 74.5 11.8 152 279-430 4-176 (203)
154 2fbn_A 70 kDa peptidylprolyl i 98.3 5.5E-06 1.9E-10 74.2 11.9 168 276-464 13-186 (198)
155 2e2e_A Formate-dependent nitri 98.3 6.2E-06 2.1E-10 72.2 11.7 127 309-438 21-152 (177)
156 2vyi_A SGTA protein; chaperone 98.2 6.3E-06 2.2E-10 67.5 10.5 97 368-464 11-109 (131)
157 2hr2_A Hypothetical protein; a 98.2 5.1E-06 1.7E-10 70.0 9.4 90 374-463 16-130 (159)
158 3rkv_A Putative peptidylprolyl 98.2 1.2E-05 4E-10 69.4 12.0 64 401-464 63-126 (162)
159 2xcb_A PCRH, regulatory protei 98.2 4.7E-06 1.6E-10 70.1 9.1 111 329-442 13-127 (142)
160 3upv_A Heat shock protein STI1 98.2 1.4E-05 4.7E-10 65.4 11.5 109 335-445 6-122 (126)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 1.7E-05 5.6E-10 68.5 12.1 107 333-442 11-120 (164)
162 1a17_A Serine/threonine protei 98.2 2.5E-05 8.5E-10 67.2 13.0 127 300-429 15-145 (166)
163 1wao_1 Serine/threonine protei 98.2 8.4E-06 2.9E-10 83.9 11.5 113 308-425 16-134 (477)
164 2xev_A YBGF; tetratricopeptide 98.2 8.4E-06 2.9E-10 66.9 9.4 90 375-464 8-105 (129)
165 4b4t_Q 26S proteasome regulato 98.2 2.7E-05 9.2E-10 79.1 15.0 163 301-463 58-244 (434)
166 3k9i_A BH0479 protein; putativ 98.1 1.9E-06 6.4E-11 69.8 5.0 83 382-464 3-90 (117)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.1E-05 7.2E-10 80.6 14.0 95 369-463 317-414 (457)
168 3q7a_A Farnesyltransferase alp 98.1 0.00046 1.6E-08 66.6 22.0 215 7-225 66-330 (349)
169 3q7a_A Farnesyltransferase alp 98.1 0.0012 3.9E-08 63.8 24.6 173 205-384 62-257 (349)
170 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 4.2E-10 65.8 9.5 96 369-464 4-108 (131)
171 2fbn_A 70 kDa peptidylprolyl i 98.1 7.5E-06 2.6E-10 73.3 8.5 119 344-464 15-151 (198)
172 2c2l_A CHIP, carboxy terminus 98.1 1.7E-05 5.9E-10 75.4 11.4 103 332-437 3-108 (281)
173 3dss_A Geranylgeranyl transfer 98.1 0.00062 2.1E-08 65.4 22.0 190 248-443 90-317 (331)
174 3q49_B STIP1 homology and U bo 98.1 2.4E-05 8.4E-10 64.9 11.0 100 332-433 8-109 (137)
175 3ro3_A PINS homolog, G-protein 98.0 3.1E-05 1E-09 66.0 11.2 93 371-463 51-157 (164)
176 1elr_A TPR2A-domain of HOP; HO 98.0 1.7E-05 5.8E-10 64.9 8.9 108 336-446 7-123 (131)
177 2kck_A TPR repeat; tetratricop 98.0 2.2E-05 7.5E-10 62.2 9.2 67 369-435 40-111 (112)
178 1p5q_A FKBP52, FK506-binding p 98.0 2.6E-05 8.9E-10 76.3 11.4 125 300-429 149-293 (336)
179 2xev_A YBGF; tetratricopeptide 98.0 4.2E-05 1.5E-09 62.6 10.9 103 341-443 10-118 (129)
180 1ihg_A Cyclophilin 40; ppiase 98.0 2.5E-05 8.6E-10 77.4 11.1 89 369-457 273-363 (370)
181 4gcn_A Protein STI-1; structur 98.0 2.3E-05 8E-10 64.3 8.8 58 301-360 11-69 (127)
182 2hr2_A Hypothetical protein; a 98.0 1.3E-05 4.5E-10 67.5 7.2 71 371-441 59-142 (159)
183 2if4_A ATFKBP42; FKBP-like, al 98.0 1.3E-05 4.3E-10 78.6 7.9 147 298-464 179-328 (338)
184 1hxi_A PEX5, peroxisome target 97.9 2.5E-05 8.6E-10 63.5 8.1 93 339-434 23-118 (121)
185 3n71_A Histone lysine methyltr 97.9 8.6E-05 2.9E-09 76.0 13.8 123 343-465 319-465 (490)
186 2l6j_A TPR repeat-containing p 97.9 6.6E-06 2.2E-10 65.4 4.1 93 368-460 3-103 (111)
187 3ro3_A PINS homolog, G-protein 97.9 5.8E-05 2E-09 64.2 10.4 97 335-431 51-159 (164)
188 3k9i_A BH0479 protein; putativ 97.9 2.1E-05 7.3E-10 63.4 6.5 92 346-438 3-98 (117)
189 2if4_A ATFKBP42; FKBP-like, al 97.9 3E-05 1E-09 75.9 8.7 151 267-435 179-333 (338)
190 3rkv_A Putative peptidylprolyl 97.9 3E-05 1E-09 66.7 7.6 77 369-445 63-142 (162)
191 4b4t_Q 26S proteasome regulato 97.8 0.00026 9E-09 71.7 15.7 156 308-463 14-203 (434)
192 3ma5_A Tetratricopeptide repea 97.8 7.4E-05 2.5E-09 58.2 8.8 65 400-464 6-70 (100)
193 3dss_A Geranylgeranyl transfer 97.8 0.0026 8.9E-08 61.0 20.9 179 283-464 90-304 (331)
194 1dce_A Protein (RAB geranylger 97.8 0.00046 1.6E-08 72.3 16.7 166 283-453 45-244 (567)
195 1ihg_A Cyclophilin 40; ppiase 97.8 0.00014 4.8E-09 72.0 12.0 112 334-464 224-336 (370)
196 1na3_A Designed protein CTPR2; 97.8 0.00012 4E-09 55.5 9.1 81 369-449 9-91 (91)
197 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00024 8.2E-09 72.6 14.1 95 371-465 270-381 (457)
198 2kat_A Uncharacterized protein 97.7 7.1E-05 2.4E-09 59.9 7.7 78 387-464 3-82 (115)
199 1zu2_A Mitochondrial import re 97.7 2E-05 7E-10 66.2 4.0 85 381-465 14-121 (158)
200 3n71_A Histone lysine methyltr 97.7 0.00019 6.6E-09 73.4 11.0 114 378-509 318-449 (490)
201 3bee_A Putative YFRE protein; 97.6 0.00031 1.1E-08 53.6 9.0 69 398-466 3-74 (93)
202 3qwp_A SET and MYND domain-con 97.6 0.00026 9E-09 71.2 10.6 116 376-509 294-427 (429)
203 2l6j_A TPR repeat-containing p 97.5 0.00033 1.1E-08 55.3 8.2 66 400-465 3-68 (111)
204 1klx_A Cysteine rich protein B 97.4 0.0015 5E-08 54.2 11.4 90 375-466 31-128 (138)
205 1na3_A Designed protein CTPR2; 97.3 0.00082 2.8E-08 50.6 7.7 64 401-464 9-72 (91)
206 3qww_A SET and MYND domain-con 97.3 0.00067 2.3E-08 68.2 9.0 82 382-463 311-410 (433)
207 1zu2_A Mitochondrial import re 97.3 0.0002 6.8E-09 60.2 4.1 51 385-435 62-125 (158)
208 1dce_A Protein (RAB geranylger 97.2 0.0026 9E-08 66.6 13.6 150 311-464 42-221 (567)
209 1wy6_A Hypothetical protein ST 97.2 0.027 9.3E-07 44.8 15.5 140 309-467 18-157 (172)
210 3ly7_A Transcriptional activat 97.1 0.0087 3E-07 57.7 14.5 46 296-343 192-243 (372)
211 2kat_A Uncharacterized protein 97.1 0.0021 7.3E-08 51.0 8.9 79 352-433 4-85 (115)
212 1klx_A Cysteine rich protein B 97.1 0.0072 2.4E-07 50.0 11.8 110 110-227 9-127 (138)
213 3qww_A SET and MYND domain-con 97.0 0.0042 1.4E-07 62.3 11.3 93 346-438 311-424 (433)
214 3qwp_A SET and MYND domain-con 96.9 0.0074 2.5E-07 60.6 12.6 100 341-440 295-415 (429)
215 1pc2_A Mitochondria fission pr 96.9 0.0074 2.5E-07 50.0 9.9 65 399-463 30-99 (152)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0026 8.9E-08 48.8 6.9 53 411-463 10-63 (99)
217 2kc7_A BFR218_protein; tetratr 96.8 0.0062 2.1E-07 46.6 8.7 80 375-462 6-88 (99)
218 3ma5_A Tetratricopeptide repea 96.7 0.0039 1.3E-07 48.1 6.7 60 299-360 8-68 (100)
219 3mkq_A Coatomer beta'-subunit; 96.7 0.13 4.5E-06 56.4 21.5 154 104-292 607-761 (814)
220 3mkq_A Coatomer beta'-subunit; 96.5 0.12 4.1E-06 56.8 19.5 129 34-191 633-761 (814)
221 3ly7_A Transcriptional activat 96.5 0.051 1.7E-06 52.4 14.1 134 329-466 190-341 (372)
222 3u64_A Protein TP_0956; tetrat 96.4 0.011 3.8E-07 54.6 9.0 87 385-471 179-276 (301)
223 2v5f_A Prolyl 4-hydroxylase su 96.0 0.043 1.5E-06 42.5 9.4 71 371-441 7-86 (104)
224 3bee_A Putative YFRE protein; 95.9 0.033 1.1E-06 42.2 7.8 68 367-434 4-76 (93)
225 3mkq_B Coatomer subunit alpha; 95.8 0.23 7.7E-06 42.2 13.5 129 275-427 13-141 (177)
226 1pc2_A Mitochondria fission pr 95.6 0.043 1.5E-06 45.4 7.8 73 367-439 30-109 (152)
227 1qsa_A Protein (soluble lytic 95.4 3.2 0.00011 43.4 26.1 114 313-429 229-347 (618)
228 1nzn_A CGI-135 protein, fissio 95.3 0.12 4.1E-06 41.1 9.4 44 420-463 57-102 (126)
229 3mkq_B Coatomer subunit alpha; 95.0 0.79 2.7E-05 38.9 14.1 129 73-223 13-141 (177)
230 3lvg_A Clathrin heavy chain 1; 95.0 0.0029 9.9E-08 62.3 -1.1 238 64-319 53-325 (624)
231 3lvg_A Clathrin heavy chain 1; 94.4 0.074 2.5E-06 52.6 6.9 197 7-218 66-325 (624)
232 1y8m_A FIS1; mitochondria, unk 94.1 1.7 5.9E-05 35.1 13.3 66 398-463 36-105 (144)
233 2v5f_A Prolyl 4-hydroxylase su 94.0 0.22 7.4E-06 38.4 7.9 65 400-464 4-75 (104)
234 1nzn_A CGI-135 protein, fissio 93.8 0.8 2.7E-05 36.4 10.6 74 367-440 33-113 (126)
235 4h7y_A Dual specificity protei 93.3 0.24 8.4E-06 40.4 7.0 54 413-466 72-125 (161)
236 3u64_A Protein TP_0956; tetrat 93.3 0.097 3.3E-06 48.4 5.3 63 371-433 201-272 (301)
237 4gns_B Protein CSD3, chitin bi 92.8 1 3.5E-05 48.1 13.0 53 410-462 346-398 (754)
238 4h7y_A Dual specificity protei 91.3 0.92 3.2E-05 37.0 8.0 58 381-438 72-131 (161)
239 3o48_A Mitochondria fission 1 89.6 1.8 6.2E-05 34.5 8.3 46 418-463 60-106 (134)
240 1wy6_A Hypothetical protein ST 89.5 7 0.00024 31.3 14.2 117 41-162 18-156 (172)
241 1v54_E Cytochrome C oxidase po 86.3 4 0.00014 30.6 7.7 63 313-377 25-87 (109)
242 3lpz_A GET4 (YOR164C homolog); 86.0 23 0.0008 33.4 20.6 167 169-361 38-215 (336)
243 3ffl_A Anaphase-promoting comp 85.9 2.1 7.2E-05 35.7 6.9 123 327-463 12-150 (167)
244 4gns_B Protein CSD3, chitin bi 85.7 25 0.00085 37.5 16.7 55 138-193 344-398 (754)
245 2wpv_A GET4, UPF0363 protein Y 85.4 24 0.00083 33.0 18.8 133 67-210 35-178 (312)
246 2uwj_G Type III export protein 84.8 9.1 0.00031 28.5 8.9 87 247-338 21-107 (115)
247 2ff4_A Probable regulatory pro 84.7 2.3 7.8E-05 41.8 7.9 68 404-471 174-246 (388)
248 2p58_C Putative type III secre 84.7 9.8 0.00033 28.4 9.0 88 246-338 21-108 (116)
249 3lpz_A GET4 (YOR164C homolog); 84.0 29 0.00099 32.7 21.8 133 68-211 38-181 (336)
250 3ffl_A Anaphase-promoting comp 83.3 5.4 0.00019 33.2 8.3 23 375-397 128-150 (167)
251 2qx5_A Nucleoporin NIC96; mRNA 82.4 19 0.00064 37.8 13.9 28 435-462 533-565 (661)
252 1v54_E Cytochrome C oxidase po 82.4 7.5 0.00026 29.2 7.7 61 113-174 27-87 (109)
253 2uwj_G Type III export protein 82.3 13 0.00046 27.7 9.2 87 145-236 20-106 (115)
254 2p58_C Putative type III secre 81.6 14 0.00049 27.6 9.5 87 145-236 21-107 (116)
255 2y69_E Cytochrome C oxidase su 80.0 6.7 0.00023 31.2 7.1 62 314-377 69-130 (152)
256 4b4t_P 26S proteasome regulato 79.7 37 0.0013 33.8 14.7 185 211-395 30-244 (445)
257 2wpv_A GET4, UPF0363 protein Y 79.1 42 0.0014 31.4 21.3 168 168-361 35-216 (312)
258 4ady_A RPN2, 26S proteasome re 78.5 83 0.0028 34.5 31.4 248 175-428 383-656 (963)
259 1y8m_A FIS1; mitochondria, unk 78.5 25 0.00085 28.4 11.1 35 403-437 79-113 (144)
260 2ff4_A Probable regulatory pro 78.1 11 0.00036 36.9 10.1 66 304-371 177-247 (388)
261 3esl_A Checkpoint serine/threo 75.7 30 0.001 29.8 10.7 101 387-513 62-168 (202)
262 3o48_A Mitochondria fission 1 74.7 30 0.001 27.5 10.4 36 403-438 80-115 (134)
263 1wdy_A 2-5A-dependent ribonucl 74.5 40 0.0014 30.4 12.8 16 276-291 225-240 (285)
264 2y69_E Cytochrome C oxidase su 72.7 14 0.00048 29.4 7.1 57 48-104 71-130 (152)
265 1zbp_A Hypothetical protein VP 72.2 44 0.0015 30.3 11.4 51 308-360 7-58 (273)
266 3mv2_A Coatomer subunit alpha; 71.8 65 0.0022 30.0 13.0 59 392-464 196-256 (325)
267 4ady_A RPN2, 26S proteasome re 71.6 1.2E+02 0.0042 33.2 22.3 26 134-159 233-258 (963)
268 4fhn_B Nucleoporin NUP120; pro 71.5 69 0.0024 36.4 15.8 140 238-385 818-987 (1139)
269 3txn_A 26S proteasome regulato 70.7 80 0.0027 30.6 16.9 57 304-360 105-166 (394)
270 4fhn_B Nucleoporin NUP120; pro 70.1 58 0.002 37.0 14.8 63 404-466 902-969 (1139)
271 1zbp_A Hypothetical protein VP 69.7 9.9 0.00034 34.5 6.6 57 378-434 6-64 (273)
272 1wdy_A 2-5A-dependent ribonucl 68.0 68 0.0023 28.7 14.5 20 71-90 42-61 (285)
273 1qsa_A Protein (soluble lytic 64.1 1.4E+02 0.0048 31.0 31.0 421 6-456 17-471 (618)
274 4a1g_A Mitotic checkpoint seri 64.0 59 0.002 26.6 9.7 79 387-468 53-134 (152)
275 1k1a_A B-cell lymphoma 3-encod 63.9 64 0.0022 28.1 11.3 53 38-90 14-68 (241)
276 4b4t_P 26S proteasome regulato 60.4 1.4E+02 0.0046 29.6 21.8 144 180-325 30-204 (445)
277 2wvi_A Mitotic checkpoint seri 59.1 76 0.0026 26.3 9.7 49 420-468 79-129 (164)
278 4b4t_R RPN7, 26S proteasome re 58.4 64 0.0022 31.8 10.9 96 300-395 133-234 (429)
279 3ltm_A Alpha-REP4; protein eng 57.6 90 0.0031 26.6 17.7 48 64-111 32-79 (211)
280 3kea_A K1L; tropism, ANK repea 57.4 72 0.0025 29.1 10.7 17 73-89 67-83 (285)
281 1n11_A Ankyrin; clathrin, BAND 56.5 1.4E+02 0.0049 29.0 13.4 17 277-293 252-268 (437)
282 4b4t_R RPN7, 26S proteasome re 56.1 27 0.00092 34.6 7.8 60 336-395 134-194 (429)
283 1k1a_A B-cell lymphoma 3-encod 54.1 91 0.0031 27.1 10.5 84 5-92 16-103 (241)
284 3ltm_A Alpha-REP4; protein eng 53.0 1.1E+02 0.0037 26.1 18.0 47 266-312 125-171 (211)
285 2qx5_A Nucleoporin NIC96; mRNA 51.6 2.3E+02 0.0079 29.6 15.6 22 379-400 548-569 (661)
286 3ltj_A Alpharep-4; protein eng 51.5 1.1E+02 0.0037 25.8 18.6 17 165-181 120-136 (201)
287 3jxi_A Vanilloid receptor-rela 51.4 20 0.0007 32.1 5.7 52 5-56 12-72 (260)
288 3eu9_A Huntingtin-interacting 50.0 67 0.0023 27.9 8.9 21 239-259 214-234 (240)
289 3hra_A Ankyrin repeat family p 49.4 86 0.003 26.3 9.3 56 176-231 113-172 (201)
290 3txn_A 26S proteasome regulato 49.3 1.9E+02 0.0065 28.0 23.4 28 333-362 316-343 (394)
291 1n11_A Ankyrin; clathrin, BAND 49.0 1.9E+02 0.0067 28.0 15.5 320 16-369 28-372 (437)
292 2nsz_A Programmed cell death p 48.1 56 0.0019 25.8 7.0 62 68-129 10-76 (129)
293 3b7b_A Euchromatic histone-lys 47.4 81 0.0028 27.4 9.0 22 239-260 214-235 (237)
294 3mkr_B Coatomer subunit alpha; 46.3 1.1E+02 0.0037 28.5 9.4 60 392-465 187-248 (320)
295 3kea_A K1L; tropism, ANK repea 46.0 91 0.0031 28.4 9.3 15 219-233 210-224 (285)
296 2nsz_A Programmed cell death p 45.3 87 0.003 24.7 7.7 63 270-332 10-77 (129)
297 3ltj_A Alpharep-4; protein eng 45.2 1.4E+02 0.0047 25.1 18.7 17 266-282 120-136 (201)
298 4a1g_A Mitotic checkpoint seri 41.8 1.4E+02 0.0048 24.3 8.6 50 82-131 82-136 (152)
299 3esl_A Checkpoint serine/threo 41.3 1.7E+02 0.0059 25.1 9.4 57 248-304 95-152 (202)
300 2d2s_A Exocyst complex compone 41.1 87 0.003 27.8 7.8 30 366-395 88-117 (235)
301 3eiq_C Programmed cell death p 40.4 1.2E+02 0.0041 28.9 9.1 184 100-284 58-305 (358)
302 2lo3_A SAGA-associated factor 40.4 10 0.00035 22.8 1.0 10 560-569 16-25 (44)
303 3ljn_A Hypothetical protein; a 39.9 71 0.0024 30.3 7.8 93 29-127 17-112 (364)
304 2ion_A PDCD4, programmed cell 39.8 51 0.0018 27.0 5.6 62 68-129 12-78 (152)
305 2zu6_B Programmed cell death p 39.5 1.1E+02 0.0039 28.4 8.6 57 68-124 6-66 (307)
306 2d2s_A Exocyst complex compone 38.6 1.5E+02 0.005 26.3 8.9 21 204-224 25-45 (235)
307 4aez_C MAD3, mitotic spindle c 37.1 1.1E+02 0.0037 26.8 7.5 50 418-467 131-182 (223)
308 3mv2_A Coatomer subunit alpha; 36.7 2.7E+02 0.0091 26.0 11.3 109 5-127 124-238 (325)
309 3bqo_A Telomeric repeat-bindin 36.6 1.7E+02 0.0057 25.0 8.1 60 385-444 94-160 (211)
310 3eu9_A Huntingtin-interacting 36.5 1.9E+02 0.0064 24.8 9.7 22 71-92 45-66 (240)
311 3hra_A Ankyrin repeat family p 36.5 1.8E+02 0.0061 24.2 9.2 120 37-165 43-172 (201)
312 3jxi_A Vanilloid receptor-rela 36.3 56 0.0019 29.1 6.1 53 106-158 12-73 (260)
313 2ion_A PDCD4, programmed cell 36.0 81 0.0028 25.7 6.3 63 270-332 12-79 (152)
314 2l0z_A Glycoprotein G2; zinc-b 34.1 12 0.00042 22.3 0.6 18 586-603 11-29 (42)
315 1bd8_A P19INK4D CDK4/6 inhibit 34.0 89 0.003 24.9 6.5 15 177-191 109-123 (156)
316 3b7b_A Euchromatic histone-lys 33.4 2.3E+02 0.0079 24.3 10.4 19 72-90 48-66 (237)
317 2r9g_A AAA ATPase, central reg 33.0 2.3E+02 0.008 24.2 8.9 46 200-246 14-62 (204)
318 3ljn_A Hypothetical protein; a 30.8 1.5E+02 0.005 28.0 8.4 16 277-292 180-195 (364)
319 4gq2_M Nucleoporin NUP120; bet 29.2 5.1E+02 0.018 28.5 13.2 111 331-449 810-950 (950)
320 2fe3_A Peroxide operon regulat 28.7 1E+02 0.0036 24.7 5.8 37 145-181 35-71 (145)
321 3aji_A 26S proteasome non-ATPa 28.1 2.8E+02 0.0095 23.6 9.8 17 74-90 46-62 (231)
322 3ygs_P Procaspase 9; apoptosis 28.0 79 0.0027 23.4 4.5 38 281-318 51-88 (97)
323 4g8k_A 2-5A-dependent ribonucl 27.8 3.6E+02 0.012 24.8 14.0 15 278-292 309-323 (337)
324 3bge_A Predicted ATPase; struc 26.7 3E+02 0.01 23.5 8.2 46 201-246 8-56 (201)
325 2rfa_A Transient receptor pote 26.6 3E+02 0.01 23.4 9.2 86 72-162 79-182 (232)
326 4b4t_S RPN3, 26S proteasome re 26.5 1.3E+02 0.0045 30.2 7.0 62 401-464 231-299 (523)
327 2k0q_A Putative uncharacterize 26.1 21 0.00071 24.4 0.8 22 580-601 8-29 (74)
328 3aji_A 26S proteasome non-ATPa 25.6 2.3E+02 0.0079 24.1 8.2 82 5-91 13-96 (231)
329 2pk8_A Uncharacterized protein 25.2 36 0.0012 24.8 1.9 30 492-521 13-42 (103)
330 2xig_A Ferric uptake regulatio 24.5 1.3E+02 0.0046 24.3 5.7 60 122-182 18-77 (150)
331 4b4t_S RPN3, 26S proteasome re 24.1 2.4E+02 0.0081 28.5 8.3 62 334-395 232-296 (523)
332 3qye_A TBC1 domain family memb 22.7 4.6E+02 0.016 24.3 10.6 42 152-193 209-250 (331)
333 1ya0_A SMG-7 transcript varian 22.2 2.4E+02 0.0081 28.3 8.1 71 375-445 158-230 (497)
334 4ets_A Ferric uptake regulatio 22.1 1.2E+02 0.004 25.0 5.0 69 113-182 14-85 (162)
335 3bu8_A Telomeric repeat-bindin 22.0 2.6E+02 0.0089 24.2 6.9 69 349-417 88-163 (235)
336 2p1h_A APAF-1, apoptotic prote 21.6 2.3E+02 0.008 20.4 6.3 38 280-317 49-86 (94)
337 2fe3_A Peroxide operon regulat 21.4 2.6E+02 0.0087 22.3 6.8 59 223-282 13-71 (145)
338 2cfu_A SDSA1; SDS-hydrolase, l 20.8 1.8E+02 0.0063 30.4 7.3 64 385-451 436-499 (658)
339 3ygs_P Procaspase 9; apoptosis 20.5 1E+02 0.0035 22.8 3.9 37 79-115 51-87 (97)
340 2b7e_A PRE-mRNA processing pro 20.4 80 0.0027 20.9 2.7 30 112-141 2-31 (59)
341 2ijq_A Hypothetical protein; s 20.3 3.5E+02 0.012 22.2 7.3 49 381-429 44-103 (161)
342 2o03_A Probable zinc uptake re 20.0 1.5E+02 0.0051 23.2 5.0 44 102-145 16-59 (131)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-41 Score=359.86 Aligned_cols=453 Identities=9% Similarity=-0.024 Sum_probs=363.4
Q ss_pred ccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 044872 2 IRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYL 81 (604)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 81 (604)
+..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++.|..+|+.+... +++..+++.++.+|.++|++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 166 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDW 166 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhH
Confidence 4456677777777777777764 3456667777777777777777777777766432 55677777777777777777
Q ss_pred HHHHHHhccCCCC-------------------CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHH
Q 044872 82 ADALKVFDDIPDK-------------------NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD-SFSIVRVLTAC 141 (604)
Q Consensus 82 ~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 141 (604)
++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 244 (597)
T 2xpi_A 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNH 244 (597)
T ss_dssp HHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTT
T ss_pred HHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhh
Confidence 7777777743322 35677777777777777777777777777643 33 23333333332
Q ss_pred hcCCChHHH--HHH-HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHH
Q 044872 142 TQLGDLSTA--KWI-HGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWSSMIQGYASNGFPKEA 216 (604)
Q Consensus 142 ~~~g~~~~a--~~~-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A 216 (604)
...++.+.+ ..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 324 (597)
T 2xpi_A 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324 (597)
T ss_dssp CSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 222211111 111 33333333344455667778889999999999999999988 7899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-
Q 044872 217 LDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD- 295 (604)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~- 295 (604)
+++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.+
T Consensus 325 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 402 (597)
T 2xpi_A 325 LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM 402 (597)
T ss_dssp HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999865 3367789999999999999999999999998764 44788999999999999999999999998753
Q ss_pred --CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 296 --KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 296 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+
T Consensus 403 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 479 (597)
T 2xpi_A 403 DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLN 479 (597)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 467899999999999999999999999999853 346789999999999999999999999999864 234688999
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-------PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+++.+|..++.+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999988 44777 77999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhhCC
Q 044872 445 YSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|.+.|++++|.+.++++.+..
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999998743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-36 Score=323.76 Aligned_cols=439 Identities=9% Similarity=-0.020 Sum_probs=372.8
Q ss_pred ccchhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHh---------------CCCCChh
Q 044872 2 IRGFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKA---------------GLDCDEF 66 (604)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~ 66 (604)
..+|.+.|++++|+.+|+++... +++..+++.++.++.+.|++++|..+|+++... +.+++..
T Consensus 124 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (597)
T 2xpi_A 124 AQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEAS 201 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHH
Confidence 45788999999999999998653 578899999999999999999999999853211 1223578
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHH--H-HHHHHHCCCCCChhhHHHHHHH
Q 044872 67 VKTSLLNLYVHCGYLADALKVFDDIPDK---NVVSWTAIISGYINEGNLEEAIN--M-FRRLLHRGLKPDSFSIVRVLTA 140 (604)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~~ 140 (604)
+++.++..|.+.|++++|.++|+++.+. +...|..+...+...+..+.+.. + +..+...+..++..+|+.++..
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999998653 34455556555544433332221 1 5555555555566677778888
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHH
Q 044872 141 CTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEAL 217 (604)
Q Consensus 141 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 217 (604)
|.+.|++++|.++++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999998876 58899999999999999999999999999853 47789999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 044872 218 DMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-- 295 (604)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 295 (604)
++|+++.... +.+..++..+...+.+.|++++|..+++.+.+... .+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998643 45788899999999999999999999999988643 3678999999999999999999999998753
Q ss_pred -CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCc--h
Q 044872 296 -KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF---SLTPM--I 369 (604)
Q Consensus 296 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~--~ 369 (604)
.+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..+.+.|++++|.++|+.+.+.. +..|+ .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 478899999999999999999999999998853 3467899999999999999999999999987542 55777 7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
.+|..++.+|.+.|++++|.+.|+++ ...| +..+|..+..+|...|++++|.+.++++++++|+++..+..++++|..
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 89999999999999999999999988 3344 788999999999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.1e-26 Score=230.39 Aligned_cols=370 Identities=17% Similarity=0.178 Sum_probs=251.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChh
Q 044872 37 LKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLE 113 (604)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 113 (604)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556677777777777766653 22344555555666666777777666654432 34556666666666677777
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccC
Q 044872 114 EAINMFRRLLHRGLKPD-SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQM 192 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 192 (604)
+|+..|+++... .|+ ..++..+..++...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777666653 233 3345666666666666666666666665543 223344455555555555555555555554
Q ss_pred CC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhH
Q 044872 193 PE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVL 269 (604)
Q Consensus 193 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 269 (604)
.+ .+..+|+.+...|.+.|++++|+..|+++.. ... .+...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~p-~~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----------------------------------LDP-NFLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----------------------------------HCT-TCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------cCC-CcHHH
Confidence 32 1234455555555555555555555555544 321 13445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH 345 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 345 (604)
+..+...+...|++++|...|++... .+..+|..+...|...|++++|++.|+++.+ ..| +..++..+..++..
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH
Confidence 56666677777777777777776542 3456777888888888888888888888888 445 45678888888999
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
.|++++|...|+.+.+. .+++..++..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...
T Consensus 284 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988854 3456778888999999999999999999887 4455 466889999999999999999999
Q ss_pred HHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 424 LNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 424 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+++++++.|+++.+|..++.++...|+
T Consensus 362 ~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999988877663
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=5.2e-28 Score=250.44 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=119.5
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC---------chHHHHHHHHHHHHcCCCCchhH
Q 044872 199 SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLG---------ALELGVWASSFMERNEFLSNPVL 269 (604)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 269 (604)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+ .++.|.++|+.|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 355566666666666666666666666666666666666666665443 24566666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH 345 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 345 (604)
||+||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666642 56666666666666666666666666666666666666666666666666
Q ss_pred cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR 381 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 381 (604)
.|++++|.+++++|.+. +..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 66666666666666654 666666666666666654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.7e-25 Score=225.54 Aligned_cols=352 Identities=14% Similarity=0.123 Sum_probs=299.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPD-SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG 180 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 180 (604)
+...+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+++.|...+...++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345667788999999998888775 344 4455666667788899999999888888765 557788999999999999
Q ss_pred CHHHHHHHHccCCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCchHHHHHHHH
Q 044872 181 NMEKARRVFDQMPE--K-DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTMVGVLSACASLGALELGVWASS 256 (604)
Q Consensus 181 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~ 256 (604)
++++|...|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999988753 3 4457899999999999999999999998875 454 3456667778888999999999999
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-
Q 044872 257 FMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN- 332 (604)
Q Consensus 257 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 332 (604)
.+.+... .+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++... ..|+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 9988653 3577889999999999999999999998864 3556788899999999999999999999988 4564
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLA 409 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~ 409 (604)
..++..+..++...|++++|...|+.+.+. .| +...+..+...|.+.|++++|.+.|+++ .. +++..+|..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 678889999999999999999999999853 44 4678999999999999999999999988 32 346779999999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+...|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999863
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-27 Score=247.35 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=167.1
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCChh
Q 044872 97 VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGD---------LSTAKWIHGYVNEAGKGRNVF 167 (604)
Q Consensus 97 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~~~~~g~~~~~~ 167 (604)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 678899999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044872 168 VATSLVDLYAKCGNMEKARRVFDQMPE----KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACA 243 (604)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (604)
+||+||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998864 7889999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 044872 244 SLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC 280 (604)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 280 (604)
+.|++++|.++++.|.+.+..|+..+|+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.6e-23 Score=215.48 Aligned_cols=425 Identities=12% Similarity=-0.006 Sum_probs=298.9
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHh
Q 044872 32 TFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYIN 108 (604)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 108 (604)
.+......+...|++++|...|+.+++.. |+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777764 5677777777777777777777777776542 355677777788888
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHH---HHHHHHhcCCHHHH
Q 044872 109 EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATS---LVDLYAKCGNMEKA 185 (604)
Q Consensus 109 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---li~~y~~~g~~~~A 185 (604)
.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..|+...... .............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 8888888888888777642 3434444444333322222222222221111111111000000 00000111111111
Q ss_pred HHHHccCC---------CC-CcchHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCCCC--------CHHHHHHHH
Q 044872 186 RRVFDQMP---------EK-DIVSWSSMIQGYAS---NGFPKEALDMFYNMQR-----ENLKP--------EYYTMVGVL 239 (604)
Q Consensus 186 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll 239 (604)
...+.... .+ +...|......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12222211 11 23344445555554 8999999999999887 32122 245667778
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHH
Q 044872 240 SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKV 316 (604)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 316 (604)
..+...|+++.|...+..+.+.... ..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999887654 88888899999999999999999998764 356788899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 317 AFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 317 A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
|+..|+++.+. .| +..++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999984 44 45688888899999999999999999988642 334678888999999999999999999887
Q ss_pred ----CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 396 ----PMEPN----AIVWGALLAGCRL---HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 396 ----~~~p~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+..|+ ..+|..+...+.. .|+++.|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 32233 3488899999999 999999999999999999999999999999999999999999999999874
Q ss_pred C
Q 044872 465 G 465 (604)
Q Consensus 465 ~ 465 (604)
.
T Consensus 479 ~ 479 (514)
T 2gw1_A 479 A 479 (514)
T ss_dssp C
T ss_pred c
Confidence 3
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.6e-23 Score=216.49 Aligned_cols=431 Identities=12% Similarity=-0.017 Sum_probs=307.9
Q ss_pred chhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 044872 4 GFVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLAD 83 (604)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 83 (604)
.+.+.|++++|+..|+++...+ |+..+|..+..++...|+++.|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 4678999999999999999865 688999999999999999999999999999975 4467789999999999999999
Q ss_pred HHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 044872 84 ALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA 160 (604)
Q Consensus 84 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 160 (604)
|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+...+...
T Consensus 92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 9999987643 3444455555554443333333333333222222222211111100000011111111111111111
Q ss_pred CC---------CCChhHHHHHHHHHHh---cCCHHHHHHHHccCCC-----------------CCcchHHHHHHHHHhCC
Q 044872 161 GK---------GRNVFVATSLVDLYAK---CGNMEKARRVFDQMPE-----------------KDIVSWSSMIQGYASNG 211 (604)
Q Consensus 161 g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~-----------------~~~~~~~~li~~~~~~g 211 (604)
.. +.+...+..+...+.. .|++++|...|+++.+ .+..+|..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 10 1224444444444444 7888888888876543 12346777888888999
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Q 044872 212 FPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFR 291 (604)
Q Consensus 212 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (604)
++++|+..|+++.... |+..++..+...+...|+++.|...+..+.+... .+..++..+...|...|++++|...|+
T Consensus 252 ~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 328 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFD 328 (514)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999888754 3467777888888889999999999988887653 356778889999999999999999998
Q ss_pred hcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc
Q 044872 292 EMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM 368 (604)
Q Consensus 292 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 368 (604)
++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+...-.++
T Consensus 329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 8753 356788888999999999999999999998742 224577888888999999999999999988754322232
Q ss_pred ----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 369 ----IEHYGCMVDLLGR---SGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 369 ----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 3478889999999 99999999999987 3334 5678899999999999999999999999999998877766
Q ss_pred HH
Q 044872 440 LL 441 (604)
Q Consensus 440 ~l 441 (604)
.+
T Consensus 488 ~~ 489 (514)
T 2gw1_A 488 AI 489 (514)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.3e-22 Score=205.45 Aligned_cols=335 Identities=12% Similarity=0.074 Sum_probs=236.8
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 044872 95 NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD 174 (604)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (604)
++..|..+...+.+.|++++|+.+|+++.... +.+..++..+..++...|++++|...++.+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45566677777777777777777777776642 2355666666667777777777777777776664 334566667777
Q ss_pred HHHhcCCHHHHHHHHccCCCCCc------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch
Q 044872 175 LYAKCGNMEKARRVFDQMPEKDI------VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGAL 248 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (604)
+|.+.|++++|.+.|+++.+.++ ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 77777777777777776654222 44444433311110 11112233444555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 325 (604)
+.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555433 22556677777888888888888888877653 456788888888888888888888888888
Q ss_pred HCCCCCCHH-HHHHH------------HHHHhccCcHHHHHHHHHHchhhcCCCCc-----hHHHHHHHHHHhhcCCHHH
Q 044872 326 KCGIQPNGN-TFVGL------------LCGCTHAGLVDEGRQFFNSMSRVFSLTPM-----IEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 326 ~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 387 (604)
. ..|+.. .+..+ ..++...|++++|..+|+.+.+. .|+ ..++..+..++.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7 445443 33333 77899999999999999999864 344 4578889999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH------------HHHHhcC----
Q 044872 388 AHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS------------NIYSASH---- 449 (604)
Q Consensus 388 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g---- 449 (604)
|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999987 4445 6789999999999999999999999999999999999999988 4566666
Q ss_pred -ChHHHHHHHHH
Q 044872 450 -KWNDAAKIRSM 460 (604)
Q Consensus 450 -~~~~A~~~~~~ 460 (604)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 55666777665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.7e-21 Score=206.43 Aligned_cols=422 Identities=12% Similarity=0.042 Sum_probs=306.2
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHH
Q 044872 30 NFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGY 106 (604)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 106 (604)
...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4566777777888888888888888888875 34677888888888888888888888887643 4667788888888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCCHHH
Q 044872 107 INEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAG--KGRNVFVATSLVDLYAKCGNMEK 184 (604)
Q Consensus 107 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~ 184 (604)
...|++++|+..|+.+ .. .|+... ..+..+...+....+...+..++... ..+........+..|....+.+.
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 8888888888888633 22 222211 11223333344566777777665431 01111122344555677788888
Q ss_pred HHHHHccCCCCCcc---hHHHHHHHHHhC--------CCchHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHcc
Q 044872 185 ARRVFDQMPEKDIV---SWSSMIQGYASN--------GFPKEALDMFYNMQRENLKPE--------YYTMVGVLSACASL 245 (604)
Q Consensus 185 A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~ 245 (604)
+...+......+.. .+..+...+... |++++|+.+|+++.+. .|+ ..++..+...+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhc
Confidence 88888777665544 333443333222 4788899999888764 343 22455566677788
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
|+++.|...+..+.+... +...+..+...|...|++++|...|+++.+ .+..+|..+...|...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 899999999999888653 477788888899999999999999988753 456788889999999999999999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 044872 323 QLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PM 397 (604)
Q Consensus 323 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 397 (604)
++.+. .| +...+..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++ +.
T Consensus 335 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 99884 34 3567888888999999999999999988864 2334667888899999999999999999886 11
Q ss_pred CC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 398 EP----NAIVWGALLAGCRLH----------KKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 398 ~p----~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+ ....+..+...+... |++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 222344455667777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 044872 464 KG 465 (604)
Q Consensus 464 ~~ 465 (604)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=8.6e-21 Score=196.28 Aligned_cols=343 Identities=12% Similarity=0.048 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 044872 65 EFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTAC 141 (604)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 141 (604)
...+..+...|.+.|++++|..+|+++.. .+..+|..+...|.+.|++++|+..|+++.+.+. .+..++..+...+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHH
Confidence 33444445555555555555555544321 2344555555555555555555555555554321 1334445555555
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCh---hHHHH------------HHHHHHhcCCHHHHHHHHccCCC---CCcchHHHH
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNV---FVATS------------LVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSM 203 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~------------li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~l 203 (604)
...|++++|...++.+.+.. +.+. ..+.. +...|.+.|++++|...|+++.+ .+...|..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 55555555555555554432 1122 33333 34457777888888887777643 355677777
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRM 283 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 283 (604)
...|.+.|++++|++.|+++.... +.+..++..+...+...|+++.|...+..+.+.... +...+..+... +
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~----~-- 255 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV----K-- 255 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH----H--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH----H--
Confidence 777888888888888887776642 234566666666777777777777777766654322 22222222000 0
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCcHHHHHHHHHH
Q 044872 284 AQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-----GNTFVGLLCGCTHAGLVDEGRQFFNS 358 (604)
Q Consensus 284 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~ 358 (604)
. ...+..+...|...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|...++.
T Consensus 256 -~------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 256 -K------------LNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -H------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -H------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 0 00111224555566666666666666655 3343 23455555566666666666666666
Q ss_pred chhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----ChHH
Q 044872 359 MSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAG------------CRLHK-----KTDL 419 (604)
Q Consensus 359 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~~-----~~~~ 419 (604)
+.+. .+.+...+..+..+|...|++++|.+.++++ ...|+ ...+..+..+ |...| +.++
T Consensus 321 a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 321 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 5532 1223555666666666666666666666655 44443 3344444322 22333 5677
Q ss_pred HHHHHHH-HHccCCCC
Q 044872 420 AEHVLNQ-LIALEPWN 434 (604)
Q Consensus 420 a~~~~~~-~~~~~p~~ 434 (604)
+.+.+++ .++..|++
T Consensus 399 ~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 399 IIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHhCCCC
Confidence 7888886 66777764
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=5.6e-18 Score=169.03 Aligned_cols=324 Identities=10% Similarity=0.025 Sum_probs=199.8
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDL 175 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (604)
+..|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|+++.|...++.+++.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 45677777788888888888888888877532 345667777777777777777777777777764 3355666677777
Q ss_pred HHhcCCHHHHHHHHccCCCCCc------chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchH
Q 044872 176 YAKCGNMEKARRVFDQMPEKDI------VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALE 249 (604)
Q Consensus 176 y~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (604)
|.+.|++++|...|++..+.++ ..+..+...+. ...+......+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 7777777777777766644222 22222210000 000111223444455555
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 250 LGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
.|...+..+.+... .+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|...|++..+
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555555544432 2445555666666666666666666666543 2445666666667777777777777777666
Q ss_pred CCCCCCH-HHHH------------HHHHHHhccCcHHHHHHHHHHchhhcCCCCch--HHHHHHHHHHhhcCCHHHHHHH
Q 044872 327 CGIQPNG-NTFV------------GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI--EHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 327 ~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~ 391 (604)
. .|+. ..+. .+...+...|++++|...++.+.+...-.|.. ..+..+...|...|++++|.+.
T Consensus 217 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred h--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3 3332 2211 22455677778888888877776542111111 2244566777778888888888
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 392 IKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 392 ~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..+..++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 8776 3334 566777777788888888888888888888888877777766665543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=8.7e-18 Score=167.63 Aligned_cols=304 Identities=12% Similarity=0.034 Sum_probs=232.8
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHH
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGY 207 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 207 (604)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4456667777778888888888888887765 34567777788888888888888888877643 3456777777788
Q ss_pred HhCCCchHHHHHHHHHHHCCCCC---CHH-HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 044872 208 ASNGFPKEALDMFYNMQRENLKP---EYY-TMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRM 283 (604)
Q Consensus 208 ~~~g~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 283 (604)
.+.|++++|+..|++..+. .| +.. .+..+... .. ......+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 8888888888888777664 34 221 11111110 00 11233456788999999
Q ss_pred HHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 284 AQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 284 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998753 466788899999999999999999999998842 3356788899999999999999999999988
Q ss_pred hhcCCCCc-hHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHH
Q 044872 361 RVFSLTPM-IEHYG------------CMVDLLGRSGQLDEAHELIKSM-PMEPN-A----IVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 361 ~~~~~~p~-~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~~~~~~a~ 421 (604)
+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+ . ..|..+...+...|+++.|.
T Consensus 216 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 216 KL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 64 333 33222 2366789999999999999987 33343 2 23555777899999999999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 422 HVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999874
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=2e-19 Score=177.60 Aligned_cols=349 Identities=13% Similarity=0.096 Sum_probs=166.2
Q ss_pred hcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 044872 77 HCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGY 156 (604)
Q Consensus 77 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 156 (604)
+.|++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999665 49999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 157 VNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 157 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45678899999999999999999988864 67789999999999999999999999977 3688
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHH
Q 044872 237 GVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKV 316 (604)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 316 (604)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999887 378999999999999999999988777654 444445568899999999999
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC------chHHHHHHHHHHhhcCCHHHH
Q 044872 317 AFGVFGQLEKCGIQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP------MIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 317 A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A 388 (604)
|+.+++...... +-... |...++-+-.+.+++.+..+.|..-. +++| +...|.-++-.|...++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999987633 22233 44444545555667777777776443 5555 356789999999999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH-------------HHHHHhcCChHHH
Q 044872 389 HELIKSMP-MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL-------------SNIYSASHKWNDA 454 (604)
Q Consensus 389 ~~~~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-------------~~~~~~~g~~~~A 454 (604)
...+-+-+ ..-+... +.....+..+.|.--++..-.++..| .....| +.++.+.|.+.-+
T Consensus 302 ~~tm~~h~~~a~~~~~---f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~ 375 (449)
T 1b89_A 302 IITMMNHPTDAWKEGQ---FKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 375 (449)
T ss_dssp HHHHHHSTTTTCCHHH---HHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred HHHHHhCChhhhhhHH---HHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHH
Confidence 88766553 2223332 33334455555544444444444444 223333 3444555555555
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
..++..+.+.
T Consensus 376 ~~yl~~v~~~ 385 (449)
T 1b89_A 376 KPYLRSVQNH 385 (449)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 5555444443
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=1.4e-18 Score=183.95 Aligned_cols=357 Identities=11% Similarity=0.072 Sum_probs=256.7
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 044872 96 VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDL 175 (604)
Q Consensus 96 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 175 (604)
...|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|++++|...++.+++.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887753 2366677778888888888888888888888775 4467778888888
Q ss_pred HHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCchH
Q 044872 176 YAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRE------NLKPEYYTMVGVLSACASLGALE 249 (604)
Q Consensus 176 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~ 249 (604)
|...|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+... ....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF----FGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH----HHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH----HHhcChH
Confidence 88888888888888644 222223333344555666667888888887542 223444333332 2233333
Q ss_pred HHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh--------cCCHHHHHHHHHhcCCCCc----------ccHHHHHHHHHh
Q 044872 250 LGVWASSFMERNEFLSN-PVLGTTLIDMYAK--------CGRMAQACKVFREMKDKDQ----------VVWNAVVSGLSM 310 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~----------~~~~~li~~~~~ 310 (604)
.+...+.... ...+. ......+...+.. .|++++|..+|+++.+.++ .+|..+...+..
T Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 3222111111 01111 1133333333332 2578899999988876332 246667778889
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHE 390 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 390 (604)
.|++++|+..|+++.+ ..|+..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+
T Consensus 256 ~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 256 KNNLLDAQVLLQESIN--LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp TTCHHHHHHHHHHHHH--HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998 56777888889999999999999999999988642 3357788999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 391 LIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 391 ~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.++++ ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99988 3334 456889999999999999999999999999999999999999999999999999999999998743
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=2.5e-16 Score=164.56 Aligned_cols=376 Identities=9% Similarity=0.005 Sum_probs=293.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHhccCCC-CCcccHHHHHHHHHh----CCChhHHHHHHH
Q 044872 50 VRSHSLIVKAGLDCDEFVKTSLLNLYVH----CGYLADALKVFDDIPD-KNVVSWTAIISGYIN----EGNLEEAINMFR 120 (604)
Q Consensus 50 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 120 (604)
...+....+.| +......|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 34444444433 56667777777777 7888888888876543 466778888888888 888999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHccC
Q 044872 121 RLLHRGLKPDSFSIVRVLTACTQ----LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK----CGNMEKARRVFDQM 192 (604)
Q Consensus 121 ~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~ 192 (604)
+..+.| +...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .+++++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 888764 55666667777766 778999999999888876 56777888888887 78899999998876
Q ss_pred CC-CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCC
Q 044872 193 PE-KDIVSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS----LGALELGVWASSFMERNEF 263 (604)
Q Consensus 193 ~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 263 (604)
.+ .+..++..+...|.+ .+++++|++.|++..+.| +...+..+...+.. .++.+.|...+....+.+
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 54 466788888888888 889999999999888764 45566666666664 788999999999888765
Q ss_pred CCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCCC-CcccHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCH
Q 044872 264 LSNPVLGTTLIDMYAK----CGRMAQACKVFREMKDK-DQVVWNAVVSGLSMN-----GYVKVAFGVFGQLEKCGIQPNG 333 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~ 333 (604)
++..+..|..+|.. .++.++|...|++..+. +...+..+...|... ++.++|+.+|++..+.| +.
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 45667778888887 89999999999987654 667778888888887 89999999999998865 34
Q ss_pred HHHHHHHHHHhccC---cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHH
Q 044872 334 NTFVGLLCGCTHAG---LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDEAHELIKSMPMEPNAIVWGA 406 (604)
Q Consensus 334 ~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ 406 (604)
..+..+...+...| ++++|.++|+...+. .+...+..|..+|.. .+++++|.+.|++.-...+...+..
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 55666666666655 889999999988863 356778888888888 8999999999998822336778888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHccCCC---CchhHHHHHHHHHh
Q 044872 407 LLAGCRL----HKKTDLAEHVLNQLIALEPW---NSGNYVLLSNIYSA 447 (604)
Q Consensus 407 ll~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 447 (604)
|...|.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8888887 89999999999999998854 66777777776654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.9e-17 Score=163.27 Aligned_cols=285 Identities=11% Similarity=-0.025 Sum_probs=195.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 164 RNVFVATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 164 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
.+..++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444555556666666666666666665532 233445555566666666666666666665532 223445555556
Q ss_pred HHHccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHH
Q 044872 241 ACASLG-ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKV 316 (604)
Q Consensus 241 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 316 (604)
.+...| +++.|...+..+.+... .+...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 66666666666665432 2455666777777777777777777776643 245566667777888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcC-------CCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 317 AFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS-------LTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 317 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
|.+.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888888887732 22456777777788888888888888887765321 1334567888888899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH-HhcCCh
Q 044872 390 ELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY-SASHKW 451 (604)
Q Consensus 390 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 451 (604)
+.+++. ...| +...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 998887 3333 5568888888899999999999999999999999988999998888 455554
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=5e-16 Score=164.05 Aligned_cols=410 Identities=9% Similarity=0.000 Sum_probs=253.1
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC--CCcccHHHHHHH-
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD--KNVVSWTAIISG- 105 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~- 105 (604)
+..+|..++.. .+.|+++.|+.+++.+++. .+.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44556666653 4556666666666666654 233455666666666666666666666666543 444555555532
Q ss_pred HHhCCChhHHHH----HHHHHHH-CCCCCC-hhhHHHHHHHHhc---------CCChHHHHHHHHHHHHhCCCCChhHHH
Q 044872 106 YINEGNLEEAIN----MFRRLLH-RGLKPD-SFSIVRVLTACTQ---------LGDLSTAKWIHGYVNEAGKGRNVFVAT 170 (604)
Q Consensus 106 ~~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (604)
....|+.++|.+ +|++.+. .|..|+ ...|...+..... .|+++.|..+|+.+++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 223455555443 4444433 233332 2333333333322 345555555555555421000011222
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH------HCC---CCCCH--------H
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ------REN---LKPEY--------Y 233 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~p~~--------~ 233 (604)
.........|. ..+..++. .+.+++.+|..++.+.. +.. +.|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 21111000000 00111110 12345566666665532 111 23431 2
Q ss_pred HHHHHHHHHHc----cCch----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHH
Q 044872 234 TMVGVLSACAS----LGAL----ELGVWASSFMERNEFLSNPVLGTTLIDMYAK-------CGRMA-------QACKVFR 291 (604)
Q Consensus 234 t~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~ 291 (604)
.+...+..... .++. ..+..+++.++... +.++.+|..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 33333322211 1222 36667888887753 3367788888888775 79987 8999999
Q ss_pred hcCC---C-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCcHHHHHHHHHHchhhcCC
Q 044872 292 EMKD---K-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG--NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL 365 (604)
Q Consensus 292 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 365 (604)
+..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|.++|+...+.
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--- 385 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--- 385 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence 8864 3 467899999999999999999999999998 56753 47888888888999999999999998853
Q ss_pred CCc-hHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch----h
Q 044872 366 TPM-IEHYGCMVDL-LGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG----N 437 (604)
Q Consensus 366 ~p~-~~~~~~li~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~ 437 (604)
.|. ...|.....+ +...|+.++|.++|++. ...| +...|..++..+...|+.+.|..+|+++++..|.++. .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 333 3333333222 34689999999999977 3334 5779999999999999999999999999998776654 6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|...+....+.|+.+.+..+.+++.+.
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777788888999999999999998764
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=2.2e-16 Score=166.75 Aligned_cols=396 Identities=11% Similarity=0.035 Sum_probs=276.4
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCChHH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNL-YVHCGYLAD 83 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~ 83 (604)
+.+.|++++|..+|+++++.. +.+...|...+..+.+.|+++.|..+|+.+++.. |+...|...+.. ....|+.++
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 356899999999999999863 3366678899999999999999999999998864 577777777753 345677777
Q ss_pred HHH----HhccCC------CCCcccHHHHHHHHHh---------CCChhHHHHHHHHHHHCCCCCCh---hhHHHHHHHH
Q 044872 84 ALK----VFDDIP------DKNVVSWTAIISGYIN---------EGNLEEAINMFRRLLHRGLKPDS---FSIVRVLTAC 141 (604)
Q Consensus 84 A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~ 141 (604)
|.+ +|+... .++...|...+....+ .|+++.|..+|++.+.. |+. ..|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e 175 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYE 175 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHH
Confidence 665 666532 2356788888887655 68899999999999873 432 2222221111
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHcc-------CC------CCC--------cchH
Q 044872 142 TQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ-------MP------EKD--------IVSW 200 (604)
Q Consensus 142 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-------~~------~~~--------~~~~ 200 (604)
...+. ..+. .++. .+.++++.|..++.. +. .|+ ...|
T Consensus 176 ~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w 233 (530)
T 2ooe_A 176 EGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233 (530)
T ss_dssp HHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHH
T ss_pred Hhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHH
Confidence 01110 0111 1111 112334444443332 11 111 2356
Q ss_pred HHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCchH-------HHHHHHHHH
Q 044872 201 SSMIQGYASN----GFP----KEALDMFYNMQRENLKPEYYTMVGVLSACAS-------LGALE-------LGVWASSFM 258 (604)
Q Consensus 201 ~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~ 258 (604)
...+.....+ ++. ++|..+|++..... +-+...|......+.. .|+++ .|..+++..
T Consensus 234 ~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 234 KKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 6555433332 222 37778888887742 2345566666666654 68876 889999988
Q ss_pred HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Cc-ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H
Q 044872 259 ERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQ-VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-G 333 (604)
Q Consensus 259 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 333 (604)
++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..|...+..+.+.|+.++|.++|++..+. .|+ .
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~ 390 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRH 390 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCT
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCch
Confidence 8632344688899999999999999999999998764 3 32 47888888888999999999999999884 343 2
Q ss_pred HHHHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHH
Q 044872 334 NTFVGLLC-GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN--AIVWGA 406 (604)
Q Consensus 334 ~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ 406 (604)
..+..... .+...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33333222 2346899999999999988653 235788999999999999999999999987 33343 458999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+.....+|+.+.+..+.+++.+..|+
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999999998884
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3e-17 Score=164.71 Aligned_cols=279 Identities=12% Similarity=0.011 Sum_probs=217.9
Q ss_pred HhcCCHHHHHH-HHccCCC-----C--CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCch
Q 044872 177 AKCGNMEKARR-VFDQMPE-----K--DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGAL 248 (604)
Q Consensus 177 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 248 (604)
.-.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34477888887 7775543 1 34568888888889999999999998888753 33566777888888888999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHH---------------HHHHHHh
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNA---------------VVSGLSM 310 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~ 310 (604)
+.|...+..+.+... .+..++..+...|...|++++|...|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 999999888887653 36778888888999999999999998877542 2222221 1333348
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPN---GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 387 (604)
.|++++|+..|+++.+. .|+ ..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++
T Consensus 194 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999884 454 788889999999999999999999998854 23347789999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-----------chhHHHHHHHHHhcCChHHH
Q 044872 388 AHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-----------SGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 388 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 454 (604)
|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ ...|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999987 3344 56789999999999999999999999999988877 78999999999999999999
Q ss_pred HHHHHHH
Q 044872 455 AKIRSMM 461 (604)
Q Consensus 455 ~~~~~~m 461 (604)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9988744
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.7e-16 Score=156.30 Aligned_cols=265 Identities=12% Similarity=0.010 Sum_probs=226.9
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 044872 195 KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLI 274 (604)
Q Consensus 195 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 274 (604)
.+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|+++.|...+..+.+... .+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 466778888999999999999999999998753 23445566677888999999999999999988653 3577888899
Q ss_pred HHHHhcC-CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 044872 275 DMYAKCG-RMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 275 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 350 (604)
..|...| ++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999998843 223466777888999999999
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCChHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM----------EPNAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~~~~~~ 419 (604)
+|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999853 2335778889999999999999999999876 11 2345689999999999999999
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|...++++++..|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988764
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=6.4e-15 Score=153.94 Aligned_cols=352 Identities=12% Similarity=0.021 Sum_probs=295.3
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCC
Q 044872 94 KNVVSWTAIISGYIN----EGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ----LGDLSTAKWIHGYVNEAGKGRN 165 (604)
Q Consensus 94 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 165 (604)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 477778888888888 899999999999998864 56677778888877 899999999999999876 6
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHccCCC-CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHH
Q 044872 166 VFVATSLVDLYAK----CGNMEKARRVFDQMPE-KDIVSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMV 236 (604)
Q Consensus 166 ~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 236 (604)
+..+..|..+|.. .+++++|.+.|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6778889999998 8899999999998765 456788888888888 789999999999998865 566777
Q ss_pred HHHHHHHc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CCcccHHHHHHH
Q 044872 237 GVLSACAS----LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK----CGRMAQACKVFREMKD-KDQVVWNAVVSG 307 (604)
Q Consensus 237 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~ 307 (604)
.+...+.. .++.++|...+....+.+ ++..+..|..+|.. .+++++|...|++..+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999998876 56777888888886 8999999999998765 466777788888
Q ss_pred HHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CcHHHHHHHHHHchhhcCCCCchHHHHHHHHH
Q 044872 308 LSM----NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA-----GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL 378 (604)
Q Consensus 308 ~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 378 (604)
|.. .++.++|+.+|++..+.| +...+..+...+... +++++|...|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998765 445666666777766 8999999999998863 2 45567778888
Q ss_pred HhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh----
Q 044872 379 LGRSG---QLDEAHELIKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA---- 447 (604)
Q Consensus 379 ~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 447 (604)
|.+.| ++++|.++|++.-...+...+..|...|.. .++.++|...++++.+.+ ++.++..|+.+|.+
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87766 789999999988223577888899999988 899999999999998764 57899999999998
Q ss_pred cCChHHHHHHHHHHhhCCC
Q 044872 448 SHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 448 ~g~~~~A~~~~~~m~~~~~ 466 (604)
.+++++|...+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998763
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.2e-16 Score=152.52 Aligned_cols=267 Identities=9% Similarity=-0.003 Sum_probs=186.7
Q ss_pred HhcCCHHHHHHHHccCCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH
Q 044872 177 AKCGNMEKARRVFDQMPEKDI----VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV 252 (604)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 252 (604)
...|+++.|+..+++....++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344556666655555443221 1233445556666666666554432 12334445555555556666666666
Q ss_pred HHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 044872 253 WASSFMERNEFLS-NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP 331 (604)
Q Consensus 253 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 331 (604)
..++.+...+..| ++.++..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 6666665554323 455666777889999999999999998 457778888999999999999999999999884 46
Q ss_pred CHHHH---HHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 044872 332 NGNTF---VGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGA 406 (604)
Q Consensus 332 ~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 406 (604)
+.... ...+..+...|++++|..+|+.+.+. .+.+...++.+..+|.+.|++++|.+.+++. ...| +..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 64311 12233444568999999999999875 3456888999999999999999999999987 4445 5668999
Q ss_pred HHHHHHhcCChHH-HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHH
Q 044872 407 LLAGCRLHKKTDL-AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 407 ll~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 457 (604)
++..+...|+.++ +.++++++++++|+++.. .+...+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9999999999875 678999999999998754 3445555556655443
No 24
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=3.1e-14 Score=156.32 Aligned_cols=379 Identities=12% Similarity=0.082 Sum_probs=282.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 044872 33 FPFVLKACAREHDFQLGVRSHSLIVKAG--LDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEG 110 (604)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 110 (604)
-....+++...|.+.++.++++.++..+ +..+....+.|+....+. +......+.++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 4556777788888888888888887432 113345566666666665 4455555554443222 455778888899
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHc
Q 044872 111 NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFD 190 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 190 (604)
.+++|..+|++.. . .....+.++. ..+++++|.++.+.+ .+..+|..+..++.+.|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999852 1 1122233322 667888888888754 357789999999999999999999997
Q ss_pred cCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHH
Q 044872 191 QMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLG 270 (604)
Q Consensus 191 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (604)
+. .|...|..++..+.+.|++++|+++|...++.. ++....+.+..+|++.++++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 64 677788889999999999999999998777653 33333335888889988887544332 2 3355566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 350 (604)
..+.+.|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 67999999999999999999986 48999999999999999999999876 35688888999999999999
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHh--cCChHHHHHHHHH
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA-IVWGALLAGCRL--HKKTDLAEHVLNQ 426 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~--~~~~~~a~~~~~~ 426 (604)
.|......+ ..+.+.+..++..|.+.|.+++|+.+++.. +..|.. ..|.-|...+.+ -++..++.+.|..
T Consensus 1268 LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 998876543 335666778999999999999999999877 665543 366556555554 4566677777776
Q ss_pred HHccCC-----CCchhHHHHHHHHHhcCChHHHHHH
Q 044872 427 LIALEP-----WNSGNYVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 427 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 457 (604)
-..+.| .+...|.-++-.|.+.|+|+.|...
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 666555 5667889999999999999999853
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.75 E-value=9.9e-15 Score=160.12 Aligned_cols=397 Identities=14% Similarity=0.120 Sum_probs=275.2
Q ss_pred ccchhhcCCchHHHHHHHHHHhCCC--CCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 044872 2 IRGFVSNDCFQHAIEFYNSMRNEGF--LPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCG 79 (604)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 79 (604)
+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +...+.+.....- ......+...+...|
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIAISNE 1063 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHHHhCC
Confidence 4578899999999999999984321 11233444455555544 5555555555442 122344667777889
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 80 YLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 80 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+.+++...|++++|...|...
T Consensus 1064 lyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred CHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 9999999998865 22223333333 667888888888755 24667888889999999999998888553
Q ss_pred hCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 044872 160 AGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVG 237 (604)
Q Consensus 160 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 237 (604)
.|...|..++..|.+.|++++|.+.|....+ ++....+.++.+|++.+++++ ++-| .. .|+...+..
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~~ 1200 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQQ 1200 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHHH
Confidence 4677778889999999999999988876543 333344458888888888875 3333 11 346667777
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHH
Q 044872 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 317 (604)
+...|...|+++.|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHH
Confidence 888888999999999888874 36788888899999999999998877 4567888888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhh--cCCHHHHHHHHHh
Q 044872 318 FGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGR--SGQLDEAHELIKS 394 (604)
Q Consensus 318 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~--~g~~~~A~~~~~~ 394 (604)
...... +..+...+..++..|...|.+++|+.+++... ++.|. ...|+-+..+|.+ -+++.++.++|..
T Consensus 1270 ~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1270 QMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 776654 33345556678888888888888888887766 44442 4455555555554 4566777777654
Q ss_pred C-CCCC------CHHHHHHHHHHHHhcCChHHHHHH--------HHH-----HHccCCCCchhHHHHHHHHHhcC
Q 044872 395 M-PMEP------NAIVWGALLAGCRLHKKTDLAEHV--------LNQ-----LIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 395 ~-~~~p------~~~~~~~ll~~~~~~~~~~~a~~~--------~~~-----~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
- .++| +...|.-+...|.+.|+++.|... |+. .+ ..+.|+..|.-.+..|...+
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i-~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII-TKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh-cccccHHHHHHHHHHHHhhC
Confidence 4 3333 455788888888888888888732 221 11 13556666666666666555
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1e-16 Score=160.71 Aligned_cols=261 Identities=10% Similarity=-0.058 Sum_probs=210.6
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|+++.|...+..+++... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 45668888889999999999999999988753 33677788888888999999999999998888653 35778888999
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---Cc----------ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKDK---DQ----------VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ-PNGNTFVGLLC 341 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~~---~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~ 341 (604)
.|.+.|++++|...|+++.+. +. ..+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999887642 11 23344578899999999999999999984321 15788999999
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998864 2335778999999999999999999999987 4445 47799999999999999999
Q ss_pred HHHHHHHHHccCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 420 AEHVLNQLIALEPW------------NSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 420 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
|...+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988776 357889999999999999999887765
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=7.8e-17 Score=161.63 Aligned_cols=280 Identities=13% Similarity=0.044 Sum_probs=127.6
Q ss_pred cCChHHHHH-HhccCCC-----C--CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH
Q 044872 78 CGYLADALK-VFDDIPD-----K--NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLST 149 (604)
Q Consensus 78 ~g~~~~A~~-~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 149 (604)
.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355566665 5553321 1 23455566666666666666666666665542 1233444444455555555555
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 044872 150 AKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLK 229 (604)
Q Consensus 150 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 229 (604)
|...+..+++.. + .+..+|..+...|...|++++|++.|+++....
T Consensus 117 A~~~~~~al~~~-~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 162 (368)
T 1fch_A 117 AISALRRCLELK-P-------------------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYT-- 162 (368)
T ss_dssp HHHHHHHHHHHC-T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHhcC-C-------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 555555554443 2 233445555555555555555555555555432
Q ss_pred CCHH-HHHH---------------HHHHHHccCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 230 PEYY-TMVG---------------VLSACASLGALELGVWASSFMERNEFLS-NPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 230 p~~~-t~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
|+.. .+.. .+..+...|+++.|...+..+.+..... +..++..+...|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~--------------- 227 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF--------------- 227 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH---------------
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH---------------
Confidence 2111 1100 1111124444444444444444432211 234444444444
Q ss_pred cCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHH
Q 044872 293 MKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEH 371 (604)
Q Consensus 293 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 371 (604)
...|++++|+..|+++... .| +..++..+...+...|++++|...|+.+.+. .+.+...
T Consensus 228 ----------------~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 287 (368)
T 1fch_A 228 ----------------NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRS 287 (368)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ----------------HHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 4444444444444444442 22 2344444444555555555555555544432 1122344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEP------------NAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+..+...|.+.|++++|.+.|+++ ...| ...+|..+..++...|+.+.|..++++.
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 445555555555555555555444 1111 1456666666666666666666665543
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=2.7e-16 Score=155.27 Aligned_cols=342 Identities=13% Similarity=0.079 Sum_probs=160.8
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
+.|+.++|.++++++ +++.+|..+..++...|++++|.+.|.. .+|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 567788888888888 2234888999999999999999888854 2567788888888888899999999
Q ss_pred HhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Q 044872 87 VFDDIPD--KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGR 164 (604)
Q Consensus 87 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~ 164 (604)
.++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++.|..+|..+
T Consensus 83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 7766553 456778889999999999988887774 367778999999999999999999999865
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
..|..|++++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+. +.|+. ...++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHH
Confidence 468889999999999999999998883 78889999999999999999966554322 34443 4467788888
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh--cCCHHHHHHHHHhcCC--------CCcccHHHHHHHHHhCCCH
Q 044872 245 LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK--CGRMAQACKVFREMKD--------KDQVVWNAVVSGLSMNGYV 314 (604)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~ 314 (604)
.|.++++..+++..+... +.....++-|.-+|++ -+++.+..+.|..-.. .+...|..+.-.|.+.+++
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999888887665 4567777777777776 4566677777764432 2567899999999999999
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHH
Q 044872 315 KVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIK 393 (604)
Q Consensus 315 ~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (604)
+.|... |.+. ...-+...|.-++.--....-+-+|..++- . -.|. ..+-|+.++...=+...+.++|+
T Consensus 299 d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~---~~p~--~l~~ll~~l~~~ld~~r~v~~~~ 367 (449)
T 1b89_A 299 DNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---E---FKPL--LLNDLLMVLSPRLDHTRAVNYFS 367 (449)
T ss_dssp HHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---H---HCGG--GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred HHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---h---cCHH--HHHHHHHHHHhccCcHHHHHHHH
Confidence 988763 4442 122244555555543333333334444433 1 1232 24555555655556666666666
Q ss_pred hC
Q 044872 394 SM 395 (604)
Q Consensus 394 ~~ 395 (604)
+.
T Consensus 368 ~~ 369 (449)
T 1b89_A 368 KV 369 (449)
T ss_dssp HT
T ss_pred Hc
Confidence 65
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.3e-16 Score=160.28 Aligned_cols=383 Identities=11% Similarity=-0.023 Sum_probs=180.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCC-----------C-CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC------
Q 044872 65 EFVKTSLLNLYVHCGYLADALKVFDDIP-----------D-KNVVSWTAIISGYINEGNLEEAINMFRRLLHRG------ 126 (604)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------ 126 (604)
...||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|+..+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3456666666666666666666665421 1 123455566666666666666666665554310
Q ss_pred CCC-ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH---HhcCCHHHHHHHHccCCC---CCc
Q 044872 127 LKP-DSFSIVRVLTACTQ--LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLY---AKCGNMEKARRVFDQMPE---KDI 197 (604)
Q Consensus 127 ~~p-~~~t~~~ll~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~~~g~~~~A~~~~~~~~~---~~~ 197 (604)
..+ ...++.....++.. .+++++|...|+.+++.. +.++..+..+..++ ...++.++|.+.|++..+ .+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 011 11233333222222 234555555555555543 12333333333332 223344444444433321 222
Q ss_pred chHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHH
Q 044872 198 VSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTL 273 (604)
Q Consensus 198 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (604)
..+..+...+.. .|++++|.+.+++..... +.+...+..+...+...|+++.|...+..+.+.... +..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence 333333332222 234444555554444321 122333444444445555555555555544443221 23333333
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHH
Q 044872 274 IDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 352 (604)
...|...+....+ ...... .......+..++|...|++.... .|+ ..++..+...+...|++++|
T Consensus 288 g~~y~~~~~~~~~------~~~~~~------~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 288 GCCYRAKVFQVMN------LRENGM------YGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHHHHHHHHHHH------C------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhh------HHHHHH------HHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHH
Confidence 3333211100000 000000 00001112356788888887763 343 35677778888899999999
Q ss_pred HHHHHHchhhcCCCCch--HHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 353 RQFFNSMSRVFSLTPMI--EHYGCMVD-LLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
...|+...+. ...|.. ..+..+.. .+...|+.++|++.|++. .+.|+...+... .+.+..++++.+
T Consensus 354 ~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l 423 (472)
T 4g1t_A 354 EYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHH
Confidence 9999888743 222221 12223332 234678999999998876 666665443322 344567788888
Q ss_pred ccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeE
Q 044872 429 ALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSW 474 (604)
Q Consensus 429 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 474 (604)
+.+|+++.+|..|+.+|...|++++|.+.+++..+.+...+...+|
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 8999999999999999999999999999999999876554455566
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=2.6e-16 Score=157.74 Aligned_cols=231 Identities=9% Similarity=-0.012 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSG 307 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 307 (604)
+...+..+...+...|+++.|...++.+++... .+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345578888899999999999999999998763 3688899999999999999999999998764 457889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNGN-----------TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMV 376 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 376 (604)
|...|++++|+..|+++.+ ..|+.. .+..+...+...|++++|..+|+.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999988 445432 233457788999999999999999986533223678899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 454 (604)
..|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|...++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3334 5779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=8.7e-16 Score=151.02 Aligned_cols=260 Identities=8% Similarity=-0.073 Sum_probs=186.4
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMY 277 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 277 (604)
..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344455555555566666666665555432 1234445555555555666666666666555543 22455556666666
Q ss_pred HhcCCHHHHHHHHHhcCCC---CcccHHHH--------------HH-HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044872 278 AKCGRMAQACKVFREMKDK---DQVVWNAV--------------VS-GLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGL 339 (604)
Q Consensus 278 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 339 (604)
...|++++|...|+++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6677777777666665431 22222222 22 3667788999999999998843 2356788888
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKT 417 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~ 417 (604)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 89999999999999999998854 2335778889999999999999999999987 3334 577899999999999999
Q ss_pred HHHHHHHHHHHccCCC------------CchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 418 DLAEHVLNQLIALEPW------------NSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
++|...++++++..|+ ++..+..++.+|.+.|++++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999998 68899999999999999999999987554
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=1.7e-15 Score=146.14 Aligned_cols=247 Identities=12% Similarity=0.018 Sum_probs=201.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENLKPEY--YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCG 281 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 281 (604)
|.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-.|+...+..+...|.+.|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4456678999999999887644 34543 3445678899999999998875543 23556778888999999999
Q ss_pred CHHHHHHHHHhcC----CC-CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHH
Q 044872 282 RMAQACKVFREMK----DK-DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 282 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
+.++|.+.|+++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677777899999999999999987 456778888999999999999999999
Q ss_pred HHchhhcCCCCchHH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 357 NSMSRVFSLTPMIEH---YGCMVDLLGRSGQLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 357 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
+.+.+. .|+... ..+++..+...|++++|..+|+++ ..+++...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999864 455321 233445555679999999999998 333477799999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHH-HHHHHHHHhhCC
Q 044872 432 PWNSGNYVLLSNIYSASHKWND-AAKIRSMMGDKG 465 (604)
Q Consensus 432 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 465 (604)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987 578999887643
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.2e-14 Score=151.15 Aligned_cols=381 Identities=10% Similarity=-0.010 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHh-----C--CCC-ChhHHHHHHHHHHhcCChHHHHHHhccCCC-------
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKA-----G--LDC-DEFVKTSLLNLYVHCGYLADALKVFDDIPD------- 93 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------- 93 (604)
....|+.+...+...|+.++|.+.+++.++. + ..| ...+|+.+...|...|++++|...|++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4556888888899999999999999988663 1 123 345788899999999999999998876431
Q ss_pred C----CcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCh-hhHHHHHHH---HhcCCChHHHHHHHHHHHHhCCC
Q 044872 94 K----NVVSWTAIISGYIN--EGNLEEAINMFRRLLHRGLKPDS-FSIVRVLTA---CTQLGDLSTAKWIHGYVNEAGKG 163 (604)
Q Consensus 94 ~----~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~---~~~~g~~~~a~~~~~~~~~~g~~ 163 (604)
+ ...+++.+..++.. .+++++|++.|++..+. .|+. ..+..+..+ +...++.++|.+.++.+++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 23456555555554 45799999999999885 4543 344443333 445678888999999998876 3
Q ss_pred CChhHHHHHHHHHHh----cCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHH
Q 044872 164 RNVFVATSLVDLYAK----CGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE-YYTM 235 (604)
Q Consensus 164 ~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 235 (604)
.+..++..+...+.. .|++++|.+.+++... .+...|..+...|.+.|++++|+..|++..+. .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 456666666655554 4678899999987643 45668899999999999999999999999875 454 4445
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCCcccHHHHHHHHHhCC
Q 044872 236 VGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMK---DKDQVVWNAVVSGLSMNG 312 (604)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 312 (604)
..+...+...+.... ... ...........+..+.|...|+... ..+..+|..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444444322111100 000 0011111112234567777777654 346778999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGN--TFVGLLC-GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
++++|+..|++..+....|... .+..+.. .....|+.++|+..|+...+ +.|+....... ...+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHH
Confidence 9999999999999854333221 2222222 34578999999999998874 45654332222 22333
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 390 ELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 390 ~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
++++.. ...| +..+|..|...+...|++++|.+.|+++++++|.+|.+..-++
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444433 2233 5668999999999999999999999999999998887766554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=6.9e-17 Score=171.80 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=126.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHhccCC-------CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHH
Q 044872 65 EFVKTSLLNLYVHCGYLADALKVFDDIP-------DKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRV 137 (604)
Q Consensus 65 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 137 (604)
..+||+||++|++.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCC-----CcchHHHHHHHHHhCC
Q 044872 138 LTACTQLGDL-STAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEK-----DIVSWSSMIQGYASNG 211 (604)
Q Consensus 138 l~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 211 (604)
|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.-+ .+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888877666666665555421 2334445666666655
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=1.4e-14 Score=142.33 Aligned_cols=261 Identities=13% Similarity=0.007 Sum_probs=194.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHH
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISG 105 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 105 (604)
+...+..+...+...|++++|..+++.+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 45567778888889999999999999998875 34677888888999999999999999987643 467788899999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHhcCCChHHHHHHHHHHHHhCCCCChhHHH
Q 044872 106 YINEGNLEEAINMFRRLLHRGLKPDSFSIVRV--------------LT-ACTQLGDLSTAKWIHGYVNEAGKGRNVFVAT 170 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 170 (604)
|...|++++|++.|+++...... +...+..+ .. .+...|++++|...++.+.+.. +.+..++.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 99999999999999999875322 22223222 22 2667788888888888888775 33677888
Q ss_pred HHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCc
Q 044872 171 SLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGA 247 (604)
Q Consensus 171 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 247 (604)
.+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|++..+.. +.+..++..+...+...|+
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 888888888888888888887643 345678888888888888888888888877642 2345666677777777777
Q ss_pred hHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 044872 248 LELGVWASSFMERNEFLS-----------NPVLGTTLIDMYAKCGRMAQACKVFREM 293 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 293 (604)
++.|...++.+.+..... +..++..+..+|.+.|+.++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777777777776644332 4556666677777777777777666544
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=170.03 Aligned_cols=131 Identities=13% Similarity=0.103 Sum_probs=108.2
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFREMK-------DKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTF 336 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 336 (604)
..-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345688999999999999999999997653 478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 337 VGLLCGCTHAGL-VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 337 ~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
+++|.++++.|. .++|.++|++|.++ |+.||..+|++++....+.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999998887 57888999999876 99999999998888777776555555554433
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=5e-14 Score=133.18 Aligned_cols=208 Identities=10% Similarity=-0.030 Sum_probs=150.2
Q ss_pred HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C-------cccHHHHHHHHHhCC
Q 044872 243 ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-D-------QVVWNAVVSGLSMNG 312 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g 312 (604)
...|+++.|...+..+.+.. .+..++..+...|...|++++|...|++..+ | + ...|..+...|...|
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG 93 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc
Confidence 33333333333333333333 2344444455555555555555555554432 1 1 356677777788888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
++++|+..|+++.. ..|+. ..+...|++++|...++.+.. ..| +...+..+...+...|++++|.+.
T Consensus 94 ~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 94 DLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp CHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888888877 44553 245566888999999988874 234 456778888889999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 392 IKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 392 ~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9887 3333 56789999999999999999999999999999999999999999999999999999999988764
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.59 E-value=5.7e-14 Score=129.34 Aligned_cols=193 Identities=16% Similarity=0.061 Sum_probs=154.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 044872 264 LSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGL 339 (604)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 339 (604)
++++..+..+...+.+.|++++|...|++..+. +...|..+...+.+.|++++|+..|++..+ ..|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 345667778888899999999999999987653 567888888999999999999999999988 4564 5678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 044872 340 LCGCTHA-----------GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGA 406 (604)
Q Consensus 340 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 406 (604)
..++... |++++|...|+...+. .| +...+..+..+|...|++++|.+.|++. ....+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888888 9999999999998853 45 4678888999999999999999999987 22267889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+...+...|++++|...++++++.+|+++..+..++.++.+.|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=7.5e-14 Score=131.92 Aligned_cols=234 Identities=9% Similarity=-0.050 Sum_probs=166.9
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--c----hhHHHH
Q 044872 199 SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS--N----PVLGTT 272 (604)
Q Consensus 199 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 272 (604)
.|..+...+...|++++|+..|++..+.. ++...+..+..++...|+++.|...+..+.+..... + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44555556666666666666666665544 455555556666666666666666666655432111 1 466777
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDE 351 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 351 (604)
+...|.+.|++++|...|++..+.+.. ...+...|++++|...++++.. ..|+. ..+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHH
Confidence 777888888888888888776542211 2345666788899999998887 45543 567778888889999999
Q ss_pred HHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 352 GRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999988854 2335677888889999999999999999887 3334 467889999999999999999999999998
Q ss_pred cC------CCCchhHHHHHH
Q 044872 430 LE------PWNSGNYVLLSN 443 (604)
Q Consensus 430 ~~------p~~~~~~~~l~~ 443 (604)
+. |++...+..+..
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHHH
Confidence 88 777666655544
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=5.6e-13 Score=137.15 Aligned_cols=376 Identities=9% Similarity=-0.001 Sum_probs=208.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHHHHHhccCCCCCcccHHHHHHHHHhCC--
Q 044872 36 VLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYL---ADALKVFDDIPDKNVVSWTAIISGYINEG-- 110 (604)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 110 (604)
+...+.+.|++++|.+++..+.+.| +...+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 4555667889999999999988876 334445566667777877 89999998877667778888877566655
Q ss_pred ---ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----
Q 044872 111 ---NLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDL---STAKWIHGYVNEAGKGRNVFVATSLVDLYAKCG---- 180 (604)
Q Consensus 111 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---- 180 (604)
++++|+..|++....|.. ..+..+...+...+.. ..+.+.+......| ++.....|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 678899999988886532 2555566555544432 23444455555444 3456666777777777
Q ss_pred CHHHHHHHHccCCCCCcchHHHHHHHHHhCC---CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 044872 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNG---FPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSF 257 (604)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 257 (604)
..++|..+++.....++.++..|...|.+.| +.++|++.|++..+.|. ++...+..+...+...
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g------------ 226 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDA------------ 226 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCG------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCC------------
Confidence 3445555566666666667777777777777 77777777777766552 2333222233333222
Q ss_pred HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 258 MERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSG-L--SMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 258 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
....+++++|...|++....++..+..+... | ...++.++|+++|++..+.| +..
T Consensus 227 -------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 227 -------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp -------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred -------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 0001455555555555542234445555544 2 34667777777777777665 444
Q ss_pred HHHHHHHHHhccC-----cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 044872 335 TFVGLLCGCTHAG-----LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDEAHELIKSMPMEPNAIVWG 405 (604)
Q Consensus 335 t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 405 (604)
....+...|. .| ++++|...|+... .-+...+..|..+|.. ..++++|.++|++.-..-+.....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 4555555554 44 7788888877665 2245555566666655 347888888887762222334444
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHH--HhcCChHHHHHHHHHHhh
Q 044872 406 ALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY--SASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 406 ~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~ 463 (604)
.|...|.. ..+.++|...++++.+.++.. +...+..+. ...++.++|.++.++-.+
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555542 457888888888888766533 333333333 233455666666655443
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.4e-13 Score=131.56 Aligned_cols=241 Identities=11% Similarity=-0.100 Sum_probs=182.5
Q ss_pred hCCCchHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 044872 209 SNGFPKEALDMFYNMQRENLK--P-EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQ 285 (604)
Q Consensus 209 ~~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 285 (604)
..|++++|+..|+++.+.... | +..++..+...+...|+++.|...+..+++... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 346777888888877765321 1 345566677777788888888888888777643 356778888888999999999
Q ss_pred HHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 044872 286 ACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 286 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 362 (604)
|...|++..+ .+...|..+...|...|++++|...|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988764 3577888899999999999999999999988 4566555555555667789999999999887754
Q ss_pred cCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 363 FSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 363 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 3677788888899999999887 33332 468888999999999999999999999999997754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 044872 437 NYVLLSNIYSASHKWNDAAKIR 458 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~ 458 (604)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66778889999887765
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=3.4e-13 Score=128.75 Aligned_cols=244 Identities=12% Similarity=0.018 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 044872 168 VATSLVDLYAKCGNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE--YYTMVGVLSAC 242 (604)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 242 (604)
........|...|++++|...|++..+ .+...|..+...|.+.|++++|++.|++.......|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 444566667777777777777776543 2444677777777777777777777777766321221 12355555556
Q ss_pred HccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHH
Q 044872 243 ASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
...|+++.|...+..+.+.... +..++..+...|...|++++|...|++..+. +...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666554322 3445555555555566666666655555432 23334444412222235555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC---HHHHHHHHHhC-
Q 044872 320 VFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ---LDEAHELIKSM- 395 (604)
Q Consensus 320 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~- 395 (604)
.|+++.+ ..|+ +...+..+...+...|+ +++|...+++.
T Consensus 164 ~~~~a~~--~~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 164 SFVKVLE--LKPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHH--HSTT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHH--hCcc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5555544 2232 12333333344444443 33344443333
Q ss_pred ---CCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 396 ---PMEPN------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 396 ---~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467777888889999999999999999999999888877776665444
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=1.6e-12 Score=133.86 Aligned_cols=343 Identities=11% Similarity=0.009 Sum_probs=211.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDL---STAKWIHGYVNEAGKGRNVFVATSLVDLYAK 178 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 178 (604)
+...+.+.|++++|+++|++..+.| +...+..+...+...|+. ++|...++...+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666778889999999999988765 333444455555667777 8888888888754 45556667775555
Q ss_pred cC-----CHHHHHHHHccCCC-CCcchHHHHHHHHHhCCCchH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchH
Q 044872 179 CG-----NMEKARRVFDQMPE-KDIVSWSSMIQGYASNGFPKE---ALDMFYNMQRENLKPEYYTMVGVLSACASLGALE 249 (604)
Q Consensus 179 ~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 249 (604)
.+ +.++|...|++..+ .+...+..|...|...+..++ +.+.+......|. ......+...+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 55 67888888887654 345578888888887765443 4444544444442 234444555555555443
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHHhcCCC---CcccHHHHHHHHHhC----CCHHHHHH
Q 044872 250 LGVWASSFMERNEFLSNPVLGTTLIDMYAKCG---RMAQACKVFREMKDK---DQVVWNAVVSGLSMN----GYVKVAFG 319 (604)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~ 319 (604)
.+........+.-...++..+..|..+|.+.| +.++|...|++..+. +...+..+...|... +++++|+.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 33333222222222234447778888888888 888888888877543 223335566666543 68888999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHH-H--hccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcC-----CHHHHHHH
Q 044872 320 VFGQLEKCGIQPNGNTFVGLLCG-C--THAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSG-----QLDEAHEL 391 (604)
Q Consensus 320 ~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~ 391 (604)
+|++.. .| +...+..+... + ...+++++|...|+...+. | +...+..|..+|. .| ++++|.++
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 988876 33 33444444444 3 4578899999998887753 3 4556666777776 45 88999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHhh
Q 044872 392 IKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA----SHKWNDAAKIRSMMGD 463 (604)
Q Consensus 392 ~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 463 (604)
|++.- .-+...+..|...|.. ..+.++|...+++..+. .++.+...|+.+|.. ..+.++|...+++..+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 98887 5566677777766655 34888899988888764 456788888888875 4578888888888888
Q ss_pred CCC
Q 044872 464 KGI 466 (604)
Q Consensus 464 ~~~ 466 (604)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=2.5e-12 Score=121.16 Aligned_cols=197 Identities=12% Similarity=-0.053 Sum_probs=159.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGC 343 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 343 (604)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777788888888888888887653 356678888888888999999999999888742 23566777888888
Q ss_pred hccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 044872 344 THAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 344 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 420 (604)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 889999999999998875 23455 4567778888899999999999999887 3333 567888888889999999999
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
...++++++..|++...+..++.++...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999888889999999999999999999999887643
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=3.9e-12 Score=117.21 Aligned_cols=197 Identities=13% Similarity=0.014 Sum_probs=146.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
++.++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|.+.++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345566677777777777777777776543 345667777777888888888888888877632 2245677777777
Q ss_pred Hhcc-CcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 044872 343 CTHA-GLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 343 ~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 418 (604)
+... |++++|...++.+.+ .+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888887775 233343 566777778888888888888888776 3333 4667788888888888888
Q ss_pred HHHHHHHHHHccCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 419 LAEHVLNQLIALEP-WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 419 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 78788888888888888888888888887653
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.48 E-value=1.2e-10 Score=123.93 Aligned_cols=418 Identities=9% Similarity=0.032 Sum_probs=270.7
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hHHHHHH
Q 044872 11 FQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY---LADALKV 87 (604)
Q Consensus 11 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~ 87 (604)
..+.+..|++.+..++ -|..+|..++..+.+.+.++.++.+|+.++.. ++.....|..-+..-.+.|. ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4456666777776654 38889999999998889999999999999887 56677888888888888888 9999999
Q ss_pred hccCCC-----CCcccHHHHHHHHHhCCCh--------hHHHHHHHHHHH-CCC-CCCh-hhHHHHHHHHhc--------
Q 044872 88 FDDIPD-----KNVVSWTAIISGYINEGNL--------EEAINMFRRLLH-RGL-KPDS-FSIVRVLTACTQ-------- 143 (604)
Q Consensus 88 f~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~-------- 143 (604)
|++... +++..|...+.-..+.++. +...++|+..+. .|. .|+. ..|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 987543 6777888877765555443 234477777554 465 5543 455555554332
Q ss_pred -CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------------cCCHHHHHHHHcc-------CCC--C-----
Q 044872 144 -LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK-------------CGNMEKARRVFDQ-------MPE--K----- 195 (604)
Q Consensus 144 -~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~~~~-------~~~--~----- 195 (604)
.++++.+..+|..++......-..+|......-.. ..+++.|...+.+ +.. |
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~ 285 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ 285 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence 23466788888888753222122333222111100 1123344444433 111 0
Q ss_pred ---------C------cchHHHHHHHHHhCCC-------chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHH-
Q 044872 196 ---------D------IVSWSSMIQGYASNGF-------PKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGV- 252 (604)
Q Consensus 196 ---------~------~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~- 252 (604)
+ ...|...+.---.++. .+.+..+|++.+.. .+-+...|.....-+...|+.+.|.
T Consensus 286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 0 1235555543333321 22345667777664 2335556666666666778888886
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------------CC------------cccHHHHHHH
Q 044872 253 WASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-------------KD------------QVVWNAVVSG 307 (604)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~ 307 (604)
.+++..+... +.+..++-.++...-+.|+++.|.++|+.+.+ |+ ...|...+..
T Consensus 365 ~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 8888887643 34566677788888888999999988887753 21 2357777777
Q ss_pred HHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCH
Q 044872 308 LSMNGYVKVAFGVFGQLEKC-GIQPNGNTFVGLLCGCTH-AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 385 (604)
..+.|..+.|..+|.+.++. +. +....|......-.+ .++.+.|..+|+...+.+ +.+...+...++.....|+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCH
Confidence 77788888999999888875 21 122333322222222 345888999998888653 33455667778888888899
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 386 DEAHELIKSM-PMEP----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 521 ~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 9999999886 3223 234788888888888999999999999988888764
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=3e-12 Score=122.26 Aligned_cols=240 Identities=10% Similarity=-0.073 Sum_probs=154.2
Q ss_pred hCCChhHHHHHHHHHHHCCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 044872 108 NEGNLEEAINMFRRLLHRGLKP---DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEK 184 (604)
Q Consensus 108 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 184 (604)
..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3467788888888887653211 34566777777778888888888888887765 3467778888888888888888
Q ss_pred HHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc
Q 044872 185 ARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERN 261 (604)
Q Consensus 185 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 261 (604)
|.+.|++..+ .+..+|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|+++.|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887653 35677888888888888888888888888774 354444444444555667777777777666654
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 044872 262 EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKD-------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGN 334 (604)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 334 (604)
.. ++...+ .++..+...++.++|...++.....+ ...|..+...|...|++++|...|++... ..|+..
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~ 249 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF 249 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH
Confidence 32 223333 35556666677777777777665532 34556666666666666666666666665 334321
Q ss_pred HHHHHHHHHhccCcHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFF 356 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~ 356 (604)
.....++...|++++|.+.+
T Consensus 250 --~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 --VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHhhHHHH
Confidence 11123344455555554443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=2.2e-11 Score=116.32 Aligned_cols=225 Identities=8% Similarity=-0.116 Sum_probs=133.9
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCchhHHH
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS----LGALELGVWASSFMERNEFLSNPVLGT 271 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (604)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44556666666777777777777776666521 23344444444444 455555555555444433
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSM----NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTH-- 345 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-- 345 (604)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444444455555 555666666666555543 44455555555555
Q ss_pred --cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 044872 346 --AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDEAHELIKSMPMEPNAIVWGALLAGCRL----HK 415 (604)
Q Consensus 346 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~ 415 (604)
.+++++|...|+...+. + +...+..+...|.. .+++++|.+.|++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666665542 2 34445555555655 66777777776665111245566666666777 77
Q ss_pred ChHHHHHHHHHHHccCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHhhCCC
Q 044872 416 KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA----SHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 466 (604)
++++|...++++.+.+| +..+..++.+|.+ .|++++|.+.+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 77777777777777655 5667777777777 7778888887777776543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=1.3e-12 Score=122.16 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=136.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCG 342 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 342 (604)
....+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345556666777778888888888777654 245677777778888888888888888887742 2255677777778
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA 420 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a 420 (604)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887753 1335667777788888888888888888876 3233 566788888888888888888
Q ss_pred HHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 421 EHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888888888888888888888888888888888888888764
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=9.3e-12 Score=117.20 Aligned_cols=208 Identities=13% Similarity=-0.005 Sum_probs=137.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-------------
Confidence 4567777888888888888888888877642 22334444444444444555555554444443321
Q ss_pred HHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
.+...|..+...|...|++++|++.|+++...+..|+ ...+..+...+...|++++|..+
T Consensus 103 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 103 -------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 2334555555666666666666666666655333443 34566666677777777777777
Q ss_pred HHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 356 FNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 356 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|...++++++..|+
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 77776431 224666777788888888888888888876 3333 5567788888888999999999999999999998
Q ss_pred CchhHH
Q 044872 434 NSGNYV 439 (604)
Q Consensus 434 ~~~~~~ 439 (604)
++....
T Consensus 242 ~~~~~~ 247 (252)
T 2ho1_A 242 SLEYQE 247 (252)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 765543
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.45 E-value=8.9e-12 Score=118.79 Aligned_cols=227 Identities=8% Similarity=-0.046 Sum_probs=174.1
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcc----hHHHHH
Q 044872 131 SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIV----SWSSMI 204 (604)
Q Consensus 131 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~----~~~~li 204 (604)
...+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456667778899999999999999999875 34566888899999999999999999988754 2222 488999
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCCH
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLI-DMYAKCGRM 283 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~ 283 (604)
..|...|++++|++.|++..+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998853 2355788889999999999999999999988763 33566777777 5554 5699
Q ss_pred HHHHHHHHhcCC--C-CcccHHHHHHHHHhCCC---HHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhccCcHH
Q 044872 284 AQACKVFREMKD--K-DQVVWNAVVSGLSMNGY---VKVAFGVFGQLEKCG-IQPNG------NTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 284 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 350 (604)
++|...|+++.+ | +...|..+...+...|+ .++|...|++..+.. -.|+. .++..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998864 3 45667777777777777 778888888877631 11331 34555666666677777
Q ss_pred HHHHHHHHchh
Q 044872 351 EGRQFFNSMSR 361 (604)
Q Consensus 351 ~a~~~~~~~~~ 361 (604)
+|.+.|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776663
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=2.7e-12 Score=128.08 Aligned_cols=242 Identities=10% Similarity=0.017 Sum_probs=183.7
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCc-hHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 198 VSWSSMIQGYASNGFPKEALDMFYNMQRENLKP-EYYTMVGVLSACASLGA-LELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 198 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
..|+.+...+.+.|++++|++.|++.... .| +...|..+..++...|+ +++|...++.+++.... +..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 45777777788888888888888887764 34 45566677777777775 88888888888776533 5677888888
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCcHH
Q 044872 276 MYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH-AGLVD 350 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~ 350 (604)
+|.+.|++++|...|+++.+ .+...|..+..++...|++++|+..|+++++ +.| +...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888764 4667888888888888999999999999988 445 45677777777777 55546
Q ss_pred HH-----HHHHHHchhhcCCCCc-hHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 044872 351 EG-----RQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSG--QLDEAHELIKSMPMEP-NAIVWGALLAGCRLHK------ 415 (604)
Q Consensus 351 ~a-----~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~~------ 415 (604)
+| +..|+...+ +.|+ ...|..+..+|...| ++++|.+.+.++...| +...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477777774 3454 667888888888888 6888988888774455 4557888888887763
Q ss_pred --C-hHHHHHHHHHH-HccCCCCchhHHHHHHHHHh
Q 044872 416 --K-TDLAEHVLNQL-IALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 416 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 447 (604)
+ .++|.++++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58899999999 89999888888887776643
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=3.4e-12 Score=117.34 Aligned_cols=193 Identities=13% Similarity=0.022 Sum_probs=104.4
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 044872 95 NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD 174 (604)
Q Consensus 95 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (604)
+...|..+...+.+.|++++|+..|++.++... .+...+..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 455566666666777777777777776665421 244556666666666677777776666666654 334556666666
Q ss_pred HHHhc-----------CCHHHHHHHHccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044872 175 LYAKC-----------GNMEKARRVFDQMPE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLS 240 (604)
Q Consensus 175 ~y~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 240 (604)
+|.+. |++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 666666666655432 234455555666666666666666666655544 44445555555
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 241 ACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
++...|++++|...++.+++... .+..++..+...|.+.|++++|...|++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555555555555555555432 1344445555555555555555555544
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=2.5e-11 Score=115.96 Aligned_cols=229 Identities=11% Similarity=-0.072 Sum_probs=158.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHccCCCC-CcchHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQMPEK-DIVSWSSMIQGYAS----NGFPKEALDMFYNMQRENLKPEYYTMVGVL 239 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 239 (604)
++..+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6678888999999999999999999987664 55688889999999 999999999999998875 566666666
Q ss_pred HHHHc----cCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHH
Q 044872 240 SACAS----LGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVK 315 (604)
Q Consensus 240 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 315 (604)
..+.. .++.++|...+....+.+ ++..+..+..+|.... ...++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~---------------------------~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK---------------------------VVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC---------------------------CcccCHH
Confidence 66666 777777777777666553 4444444444444400 0045555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhh----cCCHHH
Q 044872 316 VAFGVFGQLEKCGIQPNGNTFVGLLCGCTH----AGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGR----SGQLDE 387 (604)
Q Consensus 316 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 387 (604)
+|+..|++..+.+ +...+..+...+.. .+++++|...|+...+. .+...+..+..+|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 5555555555543 33444445555555 66677777776666542 134555666667777 777777
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCC
Q 044872 388 AHELIKSM-PMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 388 A~~~~~~~-~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~ 434 (604)
|.+.|++. ... +...+..+...+.. .++.++|...++++.+.+|++
T Consensus 205 A~~~~~~a~~~~-~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 205 ALARYSKACELE-NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 77777766 222 35667777777777 888899999999988888754
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=2e-12 Score=120.97 Aligned_cols=213 Identities=13% Similarity=0.088 Sum_probs=134.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 196 DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 196 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
....|..+...+.+.|++++|+..|+++.+. .|+ +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 3445666666677777777777777766653 221 2333444455
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 352 (604)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 55555555555555554432 244566666777777777888888887777642 23556677777788888888888
Q ss_pred HHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 353 RQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++.
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887753 2235667788888889999999999998887 3233 5678999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHh
Q 044872 431 EPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~~ 447 (604)
.|+++..+..+..+...
T Consensus 223 ~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CTTCHHHHHHHTC----
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99998887777655443
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.44 E-value=2.2e-12 Score=130.68 Aligned_cols=195 Identities=14% Similarity=0.037 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCC--------------------HHHHHH
Q 044872 269 LGTTLIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGY--------------------VKVAFG 319 (604)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 319 (604)
++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444455555566666666655554432 11 2355566666666666 777777
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHH
Q 044872 320 VFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHE 390 (604)
Q Consensus 320 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 390 (604)
.+.+.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665431 11222 246677777888888888888888877643211222 2367777888889999999988
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHHHHHHHHHhcCChHHHHH
Q 044872 391 LIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 391 ~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.+++. +..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776 11122 4477788888899999999999999988754332 4578889999999999999999
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
.+++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=9.2e-13 Score=134.06 Aligned_cols=265 Identities=14% Similarity=0.011 Sum_probs=161.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCC--CC-c----chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPE--KD-I----VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSA 241 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (604)
+..+...+...|++++|...|++..+ ++ . ..|..+...|...|++++|+..|++.....
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 116 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA-------------- 116 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 33445556666666666666655432 21 1 245555556666666666666665554310
Q ss_pred HHccCchHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------CcccHHHHHHHHHhC
Q 044872 242 CASLGALELGVWASSFMERNE-FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---------DQVVWNAVVSGLSMN 311 (604)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~ 311 (604)
.+.+ ......++..+...|...|++++|...|++..+. ...+|..+...|...
T Consensus 117 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 117 -----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp -----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 0000 0111233444455555555555555555443321 123455555566666
Q ss_pred CC-----------------HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-
Q 044872 312 GY-----------------VKVAFGVFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM- 368 (604)
Q Consensus 312 g~-----------------~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~- 368 (604)
|+ +++|++.+++..+. +-.|. ..++..+...+...|++++|..+++...+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 66666666655431 11121 246666777788888888888888776643111111
Q ss_pred ---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC----
Q 044872 369 ---IEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW---- 433 (604)
Q Consensus 369 ---~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---- 433 (604)
...+..+...|...|++++|.+.+++. +...+ ..++..+...+...|++++|...++++++..+.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 236677778888889999888888766 11111 457778888899999999999999998875432
Q ss_pred --CchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 434 --NSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 434 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...++..++.+|.+.|++++|...+++..+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2347888999999999999999999988763
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.9e-11 Score=112.56 Aligned_cols=207 Identities=12% Similarity=-0.001 Sum_probs=141.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDM 276 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 276 (604)
...|..+...+...|++++|++.|+++.+.. |+ +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~~ 51 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHHH
Confidence 3455566666666666666666666655532 21 23344455555
Q ss_pred HHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHH
Q 044872 277 YAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMN-GYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDE 351 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 351 (604)
|...|++++|...|+++.+ .+...|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 5566666666666655432 2445666677777777 888888888887776333444 4567777778888888888
Q ss_pred HHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 352 GRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PME--PNAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
|...++.+.+. .+.+...+..+...|.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++.+.
T Consensus 132 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888887753 1224667778888888899999999888877 222 356677777777889999999999999999
Q ss_pred ccCCCCchhHHHH
Q 044872 429 ALEPWNSGNYVLL 441 (604)
Q Consensus 429 ~~~p~~~~~~~~l 441 (604)
+..|+++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8899887665544
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=7.1e-12 Score=111.81 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=129.4
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHH
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCM 375 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 375 (604)
++..|..+...|.+.|++++|++.|++..+ +.| +..++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 345677777777777888888888888777 445 3456777777888888888888888877643 12235566667
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|++.++++++.+|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77788888888888888776 3334 566888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCC
Q 044872 454 AAKIRSMMGDKG 465 (604)
Q Consensus 454 A~~~~~~m~~~~ 465 (604)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999987743
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.43 E-value=4.6e-12 Score=124.42 Aligned_cols=198 Identities=14% Similarity=0.034 Sum_probs=137.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCC--------------------HHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGY--------------------VKVA 317 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 317 (604)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666666666666665432 11 2255666666677777 7777
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHH
Q 044872 318 FGVFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 318 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 388 (604)
++.+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777665431 11222 246667777888899999999988877643211111 23677788889999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHHHHHHHHHhcCChHHH
Q 044872 389 HELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYVLLSNIYSASHKWNDA 454 (604)
Q Consensus 389 ~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A 454 (604)
.+.+++. +..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9988876 11122 4477788888999999999999999998765432 34788899999999999999
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998763
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=132.38 Aligned_cols=153 Identities=8% Similarity=-0.040 Sum_probs=100.4
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCG-IQPN----GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IE 370 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 370 (604)
+|..+...|...|++++|+..+++..+.. -.++ ..++..+...+...|++++|...++...+...-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 45555566666666666666666654310 0111 135666667777777787777777766532111111 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC------CCCch
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALE------PWNSG 436 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~ 436 (604)
++..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++. |....
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 6677778888888888888888766 11122 4477788888999999999999999988653 22345
Q ss_pred hHHHHHHHHHhcCChH
Q 044872 437 NYVLLSNIYSASHKWN 452 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~ 452 (604)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 7778888888888654
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=1.9e-12 Score=134.03 Aligned_cols=207 Identities=9% Similarity=-0.083 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHH
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRM-AQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQL 324 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 324 (604)
+.+...+....+.. ..+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444433322 23566677777778888888 888888877653 34668888888889999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc---------CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhc--------CCHH
Q 044872 325 EKCGIQPNGNTFVGLLCGCTHA---------GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRS--------GQLD 386 (604)
Q Consensus 325 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~--------g~~~ 386 (604)
.+ ..|+...+..+..++... |++++|...|+.+.+. .| +...|..+..+|... |+++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88 568878888888888888 9999999999988853 34 467888888889888 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 387 EAHELIKSM-PMEP----NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMM 461 (604)
Q Consensus 387 ~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 461 (604)
+|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 4455 67799999999999999999999999999999999999999999999999999999865544
No 63
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=6.8e-12 Score=125.19 Aligned_cols=225 Identities=12% Similarity=0.018 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHHhcCC---CCcccHHHHHHHH
Q 044872 233 YTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGR-MAQACKVFREMKD---KDQVVWNAVVSGL 308 (604)
Q Consensus 233 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 308 (604)
..+..+...+...|+++.|...++.+++.... +..+++.+..+|.+.|+ +++|...|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45666677788899999999999999987643 67888999999999997 9999999999864 4678899999999
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhh-cCCH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGR-SGQL 385 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~-~g~~ 385 (604)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..|+.+.+. .| +...|+.+..+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999998 556 5578889999999999999999999999853 45 47788899999998 6665
Q ss_pred HHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC-------
Q 044872 386 DEA-----HELIKSM-PMEP-NAIVWGALLAGCRLHK--KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH------- 449 (604)
Q Consensus 386 ~~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 449 (604)
++| ++.|++. .+.| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 777 4777766 4455 5669999999898888 689999999998 889999999999999999875
Q ss_pred --ChHHHHHHHHHH-hhC
Q 044872 450 --KWNDAAKIRSMM-GDK 464 (604)
Q Consensus 450 --~~~~A~~~~~~m-~~~ 464 (604)
..++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 358999999998 553
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1e-11 Score=126.31 Aligned_cols=133 Identities=8% Similarity=-0.052 Sum_probs=78.0
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC----chH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-QPN----GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP----MIE 370 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 370 (604)
.|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++...+...-.. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334444445555555555555554433100 001 12455555666666666666666665543211011 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-------PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP 432 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 432 (604)
.+..+...|...|++++|.+.+++. +..+ ...++..+...+...|++++|...+++++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 5666777777778888877777765 1111 133677788888999999999999999988765
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=1.4e-11 Score=120.86 Aligned_cols=99 Identities=7% Similarity=-0.008 Sum_probs=60.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AI 402 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 402 (604)
++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++. +..++ ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4555555666666666666666655432111111 345566667777777777777777665 11111 33
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
++..+...+...|++++|...+++++++.+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6677777888888888888888888876653
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=2.4e-09 Score=114.03 Aligned_cols=416 Identities=9% Similarity=0.005 Sum_probs=282.7
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCC---hhHHHHHHHH
Q 044872 48 LGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGN---LEEAINMFRR 121 (604)
Q Consensus 48 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 121 (604)
.-...++..+... +.|...|..++..+.+.+.++.++.+|+++.. .....|...+..-.+.++ ++.+..+|++
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3444566666665 46899999999999999999999999998764 356678888888888898 9999999999
Q ss_pred HHHCC-CCCChhhHHHHHHHHhcCCCh--------HHHHHHHHHHHH-hCC-CCC-hhHHHHHHHHHH---------hcC
Q 044872 122 LLHRG-LKPDSFSIVRVLTACTQLGDL--------STAKWIHGYVNE-AGK-GRN-VFVATSLVDLYA---------KCG 180 (604)
Q Consensus 122 m~~~g-~~p~~~t~~~ll~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~---------~~g 180 (604)
.+... ..|+...|..-+......++. +...++|+.++. .|. .++ ..+|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98763 137877777776655444443 345578887765 465 554 468888776544 234
Q ss_pred CHHHHHHHHccCCC-CCc---chHHH---HHHHH----------HhCCCchHHHHHHHHHHH--CCCC------------
Q 044872 181 NMEKARRVFDQMPE-KDI---VSWSS---MIQGY----------ASNGFPKEALDMFYNMQR--ENLK------------ 229 (604)
Q Consensus 181 ~~~~A~~~~~~~~~-~~~---~~~~~---li~~~----------~~~g~~~~A~~~~~~m~~--~g~~------------ 229 (604)
+++.++++|++... |.. ..|.. +...+ -....++.|...+.++.. .++.
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 57889999998765 211 23322 21111 001123344555554332 1211
Q ss_pred ---C-----CH---HHHHHHHHHHHccC-------chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHH
Q 044872 230 ---P-----EY---YTMVGVLSACASLG-------ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQAC-KVF 290 (604)
Q Consensus 230 ---p-----~~---~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~ 290 (604)
| +. ..|...+.---..+ ..+....+++.++..- +.+..+|-..+..+...|+.++|. .+|
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il 367 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYL 367 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1 00 12222222211111 1234556777777653 336778888888888899999996 999
Q ss_pred HhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHhcc
Q 044872 291 REMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---------IQPN------------GNTFVGLLCGCTHA 346 (604)
Q Consensus 291 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~ 346 (604)
++... .+...|-..+....+.|++++|.++|+++.... -.|+ ...|...+....+.
T Consensus 368 ~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~ 447 (679)
T 4e6h_A 368 KLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI 447 (679)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence 88754 345567788888889999999999999998631 0142 23577777777888
Q ss_pred CcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 044872 347 GLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSG-QLDEAHELIKSM--PMEPNAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
|..+.|..+|..+.+.. ..+....|...+.+-.+.| +.+.|.++|+.. ....+...|...+.-....|+.+.|..+
T Consensus 448 ~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 448 QGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp HCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999988641 1123344544444444554 589999999987 2223566888888888889999999999
Q ss_pred HHHHHccCCC---CchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 424 LNQLIALEPW---NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 424 ~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
|+++++..|+ ....|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999988773 445677888888899999999999999987643
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.1e-11 Score=133.57 Aligned_cols=161 Identities=14% Similarity=0.163 Sum_probs=132.2
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCM 375 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 375 (604)
..+|+.+...|.+.|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|++.|++..+ +.|+ ...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34677777788888888888888888877 4564 46777788888888888888888888774 3454 6678888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 376 VDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
..+|.+.|++++|.+.|++. .+.| +...|..+...+...|++++|++.|+++++++|+++.++..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888999888888877 4455 456889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 044872 454 AAKIRSMMGD 463 (604)
Q Consensus 454 A~~~~~~m~~ 463 (604)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=4.4e-11 Score=120.45 Aligned_cols=158 Identities=7% Similarity=-0.060 Sum_probs=70.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC------CchhHHH
Q 044872 203 MIQGYASNGFPKEALDMFYNMQREN-LKPE----YYTMVGVLSACASLGALELGVWASSFMERNEFL------SNPVLGT 271 (604)
Q Consensus 203 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 271 (604)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+....+.... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 3344555666666666666654420 0111 123444444445555555555554444331000 0123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 044872 272 TLIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC----GIQPN-GNTFV 337 (604)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 337 (604)
.+...|...|++++|...|++..+ .+ ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 445555555555555555544331 01 123444455555555555555555544431 11122 23444
Q ss_pred HHHHHHhccCcHHHHHHHHHHch
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.+...+...|++++|...++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444555555555555554433
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=5.2e-10 Score=108.77 Aligned_cols=183 Identities=10% Similarity=0.025 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ccc-cHHHHHHHHHhCCCHHHHHHHHHHH
Q 044872 249 ELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD--K-DQV-VWNAVVSGLSMNGYVKVAFGVFGQL 324 (604)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m 324 (604)
++|..+++..++.-.+.+...+..++..+.+.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555421122344555556666666666666666665543 2 222 5566666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHH-hccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC
Q 044872 325 EKCGIQPNGNTFVGLLCGC-THAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-P---MEP 399 (604)
Q Consensus 325 ~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p 399 (604)
.+.. +++...|....... ...|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++. . ..|
T Consensus 161 ~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5532 11222332222221 12466666666666655431 123455556666666666666666666655 1 233
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 400 --NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 400 --~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
....|..++......|+.+.|..+++++++..|++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 23456666666666666666666666666666654
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=4.3e-11 Score=106.65 Aligned_cols=166 Identities=10% Similarity=0.030 Sum_probs=139.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLC 341 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 341 (604)
++.+|..+...|.+.|++++|...|++..+ .++.+|..+...|.+.|++++|+..+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567888899999999999999999988764 36678888999999999999999999998874 34 4556677777
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDL 419 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~ 419 (604)
.+...++++.+...+....+. .+.+...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999988753 2334677888899999999999999999987 4445 56789999999999999999
Q ss_pred HHHHHHHHHccCCCCc
Q 044872 420 AEHVLNQLIALEPWNS 435 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~ 435 (604)
|...++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999753
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=2.5e-10 Score=111.08 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=112.8
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHH
Q 044872 214 KEALDMFYNMQRENLKP-EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPV-LGTTLIDMYAKCGRMAQACKVFR 291 (604)
Q Consensus 214 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 291 (604)
++|..+|++.... +.| +...+..+...+...|+++.|..+++.+++.... +.. ++..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5566666655542 123 2334555555555566666666666666553221 222 66667777777777777777777
Q ss_pred hcCCCCc---ccHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCC
Q 044872 292 EMKDKDQ---VVWNAVVSG-LSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLT 366 (604)
Q Consensus 292 ~~~~~~~---~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 366 (604)
+..+.++ ..|...... +...|+.++|..+|++..+. .| +...+..++..+...|++++|..+|+...+...++
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 7654322 223222222 11268888888888888773 34 45667777777888888888888888887642345
Q ss_pred Cc--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 367 PM--IEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 367 p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
|+ ...|..++..+.+.|+.++|..+++++
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53 567778888888888888888888776
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=5.9e-12 Score=122.43 Aligned_cols=236 Identities=11% Similarity=0.077 Sum_probs=121.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc------CC
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQRE-------NLKPEYYTMVGVLSACASLGALELGVWASSFMERN------EF 263 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 263 (604)
..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|+++.|...+..+++. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346778888888899999999988888762 11112334555555666666666666666655442 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHH
Q 044872 264 -LSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC------GIQPN-GNT 335 (604)
Q Consensus 264 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 335 (604)
.....++..+...|...|++++|...| +++.+. +-.|+ ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHHH
Confidence 112334444444555555555555444 444331 11121 234
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-C---------CCC
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVF-----SLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-P---------MEP 399 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p 399 (604)
+..+...+...|++++|..+++.+.+.. +..| ....+..+...|.+.|++++|.+.++++ . ..|
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4444555555555555555555544320 0012 1234455555566666666666555544 1 111
Q ss_pred C-------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 400 N-------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 400 ~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
. ...+..+...+...+.+..+...+++.....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 112222223344555666666777777777777778888888888888888888888887765
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=3.9e-11 Score=120.84 Aligned_cols=225 Identities=9% Similarity=-0.027 Sum_probs=171.5
Q ss_pred HHHHHHccCchHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cccHH
Q 044872 238 VLSACASLGALELGVWASSFMERN----EFLS-NPVLGTTLIDMYAKCGRMAQACKVFREMKD-----KD-----QVVWN 302 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 302 (604)
....+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445667889999999999999764 1111 346788899999999999999998887653 11 34788
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCC-chHHHH
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRV---FSLTP-MIEHYG 373 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~ 373 (604)
.+...|...|++++|+..|++..+. +-.+. ..++..+...+...|++++|...++...+. .+..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988752 11111 147888889999999999999999987751 12213 356788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PM-----EPN-AIVWGALLAGCRLHKK---TDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
.+...|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ .+.|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8899999999999999999876 11 122 2245666777888888 77777777765 233445567889999
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 044872 444 IYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (604)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=119.90 Aligned_cols=238 Identities=14% Similarity=0.023 Sum_probs=147.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHccCCC--------C---CcchHHHHHHHHHhCCCchHHHHHHHHHHHC------C
Q 044872 165 NVFVATSLVDLYAKCGNMEKARRVFDQMPE--------K---DIVSWSSMIQGYASNGFPKEALDMFYNMQRE------N 227 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 227 (604)
+..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 457788999999999999999999988754 1 2346888999999999999999999998763 2
Q ss_pred CCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHc------CCCC-chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcc
Q 044872 228 LKP-EYYTMVGVLSACASLGALELGVWASSFMERN------EFLS-NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQV 299 (604)
Q Consensus 228 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 299 (604)
-.| ...++..+...+...|+++.|...+..+.+. +..+ ...++..+...|...|++++|...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~---------- 175 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY---------- 175 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH----------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH----------
Confidence 223 3456778888999999999999999888753 1111 233344444555555555555544
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhc------CCC
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKC------GIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVF------SLT 366 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~ 366 (604)
|+++... +..|+. .++..+...+...|++++|..+++.+.+.. ...
T Consensus 176 ---------------------~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 176 ---------------------YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ---------------------HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ---------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4444332 112222 345555556666666666666666554310 011
Q ss_pred Cc-------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 367 PM-------IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 367 p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
+. ...+..+...+...+.+.+|...++.. ...|+ ..+|..+...|...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 112222333444556666666666666 23343 458888999999999999999999999988774
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=2.5e-09 Score=107.01 Aligned_cols=258 Identities=14% Similarity=0.031 Sum_probs=159.8
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHcCCC-Cc----hhHHHHHHHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEYY----TMVGVLSACASLGALELGVWASSFMERNEFL-SN----PVLGTTLIDM 276 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~ 276 (604)
.+...|++++|...+++........+.. ++..+...+...|+++.|...+....+.... .+ ......+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 2233334445555666665555554432100 01 1234556666
Q ss_pred HHhcCCHHHHHHHHHhcCC-------C----CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 044872 277 YAKCGRMAQACKVFREMKD-------K----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ--P--NGNTFVGLLC 341 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 341 (604)
|...|++++|...+++... + ....+..+...+...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777765532 1 1134555667778888888888888887653211 1 2346667777
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCchHHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG-----CMVDLLGRSGQLDEAHELIKSM-PMEPN-----AIVWGALLAG 410 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~ 410 (604)
.+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999999887764311111111121 2334577899999999999887 22221 2356677788
Q ss_pred HHhcCChHHHHHHHHHHHccCCC-----C-chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPW-----N-SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...|++++|...++++++..+. + ...+..++.++...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999988764322 1 23677789999999999999999998875
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=2.1e-10 Score=101.86 Aligned_cols=159 Identities=16% Similarity=0.015 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 044872 268 VLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCT 344 (604)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 344 (604)
..+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+. .|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~------------- 73 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP------------- 73 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC-------------
Confidence 34455555666666666666666665542 3344445555555555555555555555442 12
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
.+...+..+...|...|++++|.+.++++ .. +.+...|..+...+...|++++|..
T Consensus 74 ----------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 74 ----------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 12334444455555555555555555554 11 2245566667777777777777777
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 423 VLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.++++++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777888888888888877777765
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=5.6e-10 Score=103.24 Aligned_cols=203 Identities=9% Similarity=0.017 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK---DQVVWNAVVSG 307 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~ 307 (604)
|...+......+...|++++|...+..+++....++...+..+...|.+.|++++|...|++..+. +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 556677777788888888888888888888765456666666888888888888888888877542 44577778888
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc---hHHHHHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPN-G-------NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM---IEHYGCMV 376 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li 376 (604)
|...|++++|+..|++..+ ..|+ . ..+..+...+...|++++|...|+.+. ...|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 8888888888888888877 3443 3 346666677778888888888888877 34554 45666666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 377 DLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
..|...|+. +++++ .. ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666655543 22222 11 12333343332 33455679999999999999999887777776654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=4.4e-10 Score=112.85 Aligned_cols=220 Identities=8% Similarity=-0.043 Sum_probs=134.6
Q ss_pred HccCchHHHHHHHHHHHHcCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-----cccHHHHHHH
Q 044872 243 ASLGALELGVWASSFMERNEF--L---SNPVLGTTLIDMYAKCGRMAQACKVFREMKD-----KD-----QVVWNAVVSG 307 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~li~~ 307 (604)
...|+++.|...+..+.+... . ....++..+...|...|+++.|...+++..+ ++ ..+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 344555555555554443210 0 0133455566666666666666666555431 11 2356667777
Q ss_pred HHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCCchHHHHHHHHHH
Q 044872 308 LSMNGYVKVAFGVFGQLEKC----GIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF---SLTPMIEHYGCMVDLL 379 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~ 379 (604)
|...|++++|++.|++..+. +-.+ ...++..+..++...|++++|...|+...+.. +.+....++..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 77778888887777776542 1111 12456677778888888888888888776411 1122255677777888
Q ss_pred hhcCCHHHHHHHHHhC----CC--CCCH-HHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 380 GRSGQLDEAHELIKSM----PM--EPNA-IVWGALLAGCRLHKK---TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~----~~--~p~~-~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
.+.|++++|.+.+++. +. .|.. ..+..+...+...++ .++|...+++. ...|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 8888888888888776 11 2222 245555555666777 66666666652 222334456778889999999
Q ss_pred ChHHHHHHHHHHhh
Q 044872 450 KWNDAAKIRSMMGD 463 (604)
Q Consensus 450 ~~~~A~~~~~~m~~ 463 (604)
++++|...+++..+
T Consensus 351 ~~~~A~~~~~~al~ 364 (378)
T 3q15_A 351 HFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887764
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=9.3e-10 Score=97.54 Aligned_cols=169 Identities=12% Similarity=-0.005 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHH
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGL 308 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 308 (604)
...+..+...+...|+++.|...+..+.+... .+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34566777888899999999999998876543 3678888999999999999999999998753 3556777777788
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------------- 139 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-------------------------- 139 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------------------------
Confidence 88888888888888877632 223444445555555555555555555544432
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 389 HELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.+.+...|..+...+...|++++|...++++++..|+++.
T Consensus 140 --------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 140 --------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred --------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 1123456666667777777777777777777777666543
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=2.4e-10 Score=118.25 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=155.5
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHH
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNGYV-KVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFN 357 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 357 (604)
++++...++.... .+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666665543 3567888889999999999 999999999998 4564 6789999999999999999999999
Q ss_pred HchhhcCCCCchHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChH
Q 044872 358 SMSRVFSLTPMIEHYGCMVDLLGRS---------GQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH--------KKTD 418 (604)
Q Consensus 358 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------~~~~ 418 (604)
... .+.|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4568888888999999999 9999999999988 4445 567999999999988 9999
Q ss_pred HHHHHHHHHHccCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 419 LAEHVLNQLIALEP---WNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 419 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+|...++++++++| +++..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999998743
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=6e-10 Score=103.03 Aligned_cols=187 Identities=15% Similarity=0.002 Sum_probs=101.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD----KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLL 340 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 340 (604)
|+..+..+...|.+.|++++|...|++..+ ++...|..+..++...|++++|+..|++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 345555556666666666666666665432 3444455555566666666666666666665 34433 3455555
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-h-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--H-HHHHHHH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-I-------EHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN--A-IVWGALL 408 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~-~~~~~ll 408 (604)
.++...|++++|...++...+. .|+ . ..|..+...+...|++++|.+.|++. ...|+ . ..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666665542 222 2 23444555555566666666666554 44444 2 2444444
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..+.. .+...++++..+.+.+...|..+ .....|.+++|...+++..+.
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 44432 23334455555544443333222 223344559999999988774
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=1.9e-08 Score=100.55 Aligned_cols=257 Identities=12% Similarity=0.016 Sum_probs=128.0
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CC----hhHHHHHHH
Q 044872 104 SGYINEGNLEEAINMFRRLLHRGLKPDSF----SIVRVLTACTQLGDLSTAKWIHGYVNEAGKG-RN----VFVATSLVD 174 (604)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~ 174 (604)
..+...|++++|...+++........+.. ++..+...+...|+++.|...+....+.... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655532111111 2333344455556666666666555442110 11 122445556
Q ss_pred HHHhcCCHHHHHHHHccCCC-------C----CcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 044872 175 LYAKCGNMEKARRVFDQMPE-------K----DIVSWSSMIQGYASNGFPKEALDMFYNMQRENLK--P--EYYTMVGVL 239 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 239 (604)
.|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66666666666666655421 1 0123445556666677777777777666542111 1 123444555
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCc--hhHH-H---HHHHHHHhcCCHHHHHHHHHhcCCCCc-------ccHHHHHH
Q 044872 240 SACASLGALELGVWASSFMERNEFLSN--PVLG-T---TLIDMYAKCGRMAQACKVFREMKDKDQ-------VVWNAVVS 306 (604)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~-~---~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~ 306 (604)
..+...|+++.|...++........++ .... . ..+..+...|++++|...+++....+. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 556666666666666666554311111 1111 1 233446677777777777777665321 12344555
Q ss_pred HHHhCCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 307 GLSMNGYVKVAFGVFGQLEKC----GIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 307 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666667777776666665431 111111 133333344445555555555554443
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=7.8e-09 Score=103.67 Aligned_cols=227 Identities=9% Similarity=-0.011 Sum_probs=153.8
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----C-CchhHHHH
Q 044872 204 IQGYASNGFPKEALDMFYNMQRENL-KPE----YYTMVGVLSACASLGALELGVWASSFMERNEF-----L-SNPVLGTT 272 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~ 272 (604)
...+...|++++|+..|++...... .+| ..++..+...+...|+++.|...+....+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445566666666666666654210 122 23445555566666677666666666554210 1 12445667
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKD-----KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKC----GIQPNGNTFVGL 339 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~l 339 (604)
+...|...|++++|...|++..+ .+ ..+++.+...|...|++++|+..|++.... +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 77778888888888877776543 12 246677788888889999999988887661 222235677888
Q ss_pred HHHHhccCcHHHHHHHHHHchhhcCCC--C-chHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 044872 340 LCGCTHAGLVDEGRQFFNSMSRVFSLT--P-MIEHYGCMVDLLGRSGQ---LDEAHELIKSMPMEPNAI-VWGALLAGCR 412 (604)
Q Consensus 340 l~a~~~~g~~~~a~~~~~~~~~~~~~~--p-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~~-~~~~ll~~~~ 412 (604)
...+...|++++|..+++...+...-. | ....+..+...|...|+ +.+|...+++.+..|+.. .+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 889999999999999999877542221 2 23456666677888888 899999999876555443 6677888899
Q ss_pred hcCChHHHHHHHHHHHcc
Q 044872 413 LHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~ 430 (604)
..|++++|...++++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988754
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.4e-09 Score=103.80 Aligned_cols=221 Identities=12% Similarity=0.128 Sum_probs=153.6
Q ss_pred HccCchHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----CcccHHHH
Q 044872 243 ASLGALELGVWASSFMERN-------EFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-------K----DQVVWNAV 304 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 304 (604)
...|+++.|...++..++. ..+....++..+...|...|++++|...|++..+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666542 2233467788899999999999999999987652 1 24578888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhc-----CCCC-chHH
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKC------GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF-----SLTP-MIEH 371 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~ 371 (604)
...|...|++++|++.|++.... .-.|+ ..++..+...+...|++++|..+++.+.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998763 11233 4677888889999999999999999887531 1123 3567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C---------CCCC-HHHHHHHHHHHHhcCC------hHHHHHHHHHHHccCCCC
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-P---------MEPN-AIVWGALLAGCRLHKK------TDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~p~~ 434 (604)
+..+...|.+.|++++|.+.+++. . ..+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788889999999999999999876 1 1222 2244444444443333 222222333222233555
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 435 SGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 435 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999998875
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=1.2e-08 Score=96.35 Aligned_cols=204 Identities=10% Similarity=-0.016 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C---cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDK---D---QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI-QPN-GNTFV 337 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 337 (604)
+...+-.+...+.+.|++++|...|+++.+. + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3455555666677777777777777776542 2 34566666777777777777777777776321 112 23455
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 044872 338 GLLCGCTH--------AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALL 408 (604)
Q Consensus 338 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 408 (604)
.+..++.. .|++++|...|+.+.+.+ |+ .....++.......+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 777777777777776542 22 11121111111000000 11245667
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHHhc----------CChHHHHHHHHHHhhCCCccCCceeEE
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYSAS----------HKWNDAAKIRSMMGDKGIQKIRGCSWV 475 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~ 475 (604)
..+...|+++.|...++++++..|++ +.++..++.+|... |++++|...++++.+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 78899999999999999999999984 45788899999877 999999999999987432
Q ss_pred EECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHH
Q 044872 476 EVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKA 510 (604)
Q Consensus 476 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~ 510 (604)
.+|...++...+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 345556666666776666654
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.04 E-value=8.1e-10 Score=119.08 Aligned_cols=162 Identities=12% Similarity=0.200 Sum_probs=136.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLC 341 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 341 (604)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+ +.|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456778888889999999999999988754 3567888899999999999999999999988 5665 568888889
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~ 418 (604)
++...|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++. .+.|+ ...|..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999988853 554 678889999999999999999999887 55564 568999999999999999
Q ss_pred HHHHHHHHHHccCC
Q 044872 419 LAEHVLNQLIALEP 432 (604)
Q Consensus 419 ~a~~~~~~~~~~~p 432 (604)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999886543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=3.9e-09 Score=101.69 Aligned_cols=215 Identities=12% Similarity=0.020 Sum_probs=117.1
Q ss_pred CHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 044872 181 NMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRE----NLKPE-YYTMVGVLSACASLGALELGVWAS 255 (604)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 255 (604)
++++|...|++. ...|...|++++|++.|.+.... |-.++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477887776653 66778888888888888776542 21111 234555555555555555555555
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCCCC--
Q 044872 256 SFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMN-GYVKVAFGVFGQLEKCGIQPN-- 332 (604)
Q Consensus 256 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-- 332 (604)
...++. +...|+...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 544331 1111222211 12455566666664 7777777777666542 121
Q ss_pred -----HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 044872 333 -----GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI-----EHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA 401 (604)
Q Consensus 333 -----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 401 (604)
..++..+...+...|++++|...|+...+...-.+.. ..+..+...+...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2345666666777777777777777666431111111 13455566666777777777777666 334432
Q ss_pred H------HHHHHHHHHH--hcCChHHHHHHHHHHHccCCCC
Q 044872 402 I------VWGALLAGCR--LHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 402 ~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
. .+..++.++. ..++++.|...|+++..++|..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 1 2333444443 3455666776666666666644
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.01 E-value=4.6e-09 Score=101.15 Aligned_cols=202 Identities=11% Similarity=-0.021 Sum_probs=145.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----C----cccHHHHHHHHHhCCCHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-----D----QVVWNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A 317 (604)
++++|...+..+ ...|...|++++|...|++..+- + ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776654 44677889999888888766431 1 45788899999999999999
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhcc-CcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHH
Q 044872 318 FGVFGQLEKC----GIQPN-GNTFVGLLCGCTHA-GLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDE 387 (604)
Q Consensus 318 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 387 (604)
+..|++..+. |-.+. ..++..+...|... |++++|...|+...+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988662 11111 35788888899996 9999999999988753211111 3567888999999999999
Q ss_pred HHHHHHhC-CCCC---CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh-----HHHHHHHHH--hcCCh
Q 044872 388 AHELIKSM-PMEP---NA-----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN-----YVLLSNIYS--ASHKW 451 (604)
Q Consensus 388 A~~~~~~~-~~~p---~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 451 (604)
|.+.|++. ...| .. ..|..+...+...|+++.|...+++.++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 2222 21 156777788999999999999999999999975543 344566664 56778
Q ss_pred HHHHHHHHHHhh
Q 044872 452 NDAAKIRSMMGD 463 (604)
Q Consensus 452 ~~A~~~~~~m~~ 463 (604)
++|...++.+..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888876644
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.96 E-value=2.7e-08 Score=93.99 Aligned_cols=202 Identities=8% Similarity=-0.051 Sum_probs=144.0
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cccHH
Q 044872 231 EYYTMVGVLSACASLGALELGVWASSFMERNEFLSN--PVLGTTLIDMYAKCGRMAQACKVFREMKD--KD----QVVWN 302 (604)
Q Consensus 231 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~ 302 (604)
+...+......+...|+++.|...+..+++...... ...+..+..+|.+.|++++|...|++..+ |+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 556677778888999999999999999988653321 56778889999999999999999998864 31 24566
Q ss_pred HHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHH
Q 044872 303 AVVSGLSM--------NGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG 373 (604)
Q Consensus 303 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 373 (604)
.+..++.. .|++++|+..|++..+. .|+.. ....+ ..+..+... ....+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 77788888 99999999999999884 45432 11111 111111110 012245
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHccCCCCch--
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLH----------KKTDLAEHVLNQLIALEPWNSG-- 436 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~-- 436 (604)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 5677888999999999999887 22333 34677777777755 8899999999999999998853
Q ss_pred -hHHHHHHHHHhcCChHH
Q 044872 437 -NYVLLSNIYSASHKWND 453 (604)
Q Consensus 437 -~~~~l~~~~~~~g~~~~ 453 (604)
+...+..++.+.|++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 44455666655555443
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.95 E-value=2.5e-08 Score=91.87 Aligned_cols=180 Identities=11% Similarity=-0.013 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD--KD----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG----NTF 336 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~ 336 (604)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34445566677888888888888888764 32 235667778888888888888888888773 3432 133
Q ss_pred HHHHHHHhc------------------cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 044872 337 VGLLCGCTH------------------AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSMPM 397 (604)
Q Consensus 337 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 397 (604)
..+..++.. .|++++|...|+.+.+. .|+ ...+.+... .+......
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 333333332 34556666666655532 222 111111100 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 398 EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS---GNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00112445668899999999999999999999876 5688999999999999999999999987654
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.95 E-value=5.5e-10 Score=95.73 Aligned_cols=138 Identities=11% Similarity=-0.031 Sum_probs=95.2
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 385 (604)
+...|++++|+..+++... ..|+. ..+..+...|...|++++|++.|+...+. .| +...|..+...|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCch
Confidence 3445566666666666544 23332 34455666677777777777777766642 34 356677777777777888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHV-LNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
++|...|++. .+.| +..+|..+...+...|+.++|.+. ++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8887777776 4445 456788888888888888766554 588899999998888888888887775
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=1.8e-08 Score=83.63 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=77.8
Q ss_pred HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 044872 338 GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM-EPNAIVWGALLAGCRLHK 415 (604)
Q Consensus 338 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~~ 415 (604)
.+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|.+.++++ .. +.+...|..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444445555555555544432 1 123344445555555566666666666554 11 224556666777777777
Q ss_pred ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 416 KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++++|...++++++..|.++..+..++.+|.+.|++++|...++++.+.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888877777777777777888888888888888888777653
No 93
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=2e-08 Score=95.56 Aligned_cols=196 Identities=12% Similarity=-0.011 Sum_probs=111.0
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHc------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----
Q 044872 235 MVGVLSACASLGALELGVWASSFMERN------EF-LSNPVLGTTLIDMYAKCGRMAQACKVFREMKD-------K---- 296 (604)
Q Consensus 235 ~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~---- 296 (604)
+..+...+...|+++.|...+..+++. +- .....++..+...|...|++++|...|++..+ +
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334444444444444444444444332 11 11234555566666666666666666655432 1
Q ss_pred CcccHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhc------
Q 044872 297 DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKC------GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF------ 363 (604)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------ 363 (604)
...+|..+...|...|++++|+..|+++.+. +-.|+ ..++..+...+...|++++|..+++.+.+..
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2345666777777888888888888777663 11343 3567778888888899999988888776421
Q ss_pred CCCCc-hHHHHHHHHHHhh------cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 364 SLTPM-IEHYGCMVDLLGR------SGQLDEAHELIKSMP-MEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
...+. ...+..+...+.. ...+.++...++... ..|+ ..++..+...+...|++++|...++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 2233333333332 233455555555553 2333 347888889999999999999999998865
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=7.2e-08 Score=91.29 Aligned_cols=239 Identities=10% Similarity=0.040 Sum_probs=145.5
Q ss_pred HhcCCHHHHHHHHccCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 044872 177 AKCGNMEKARRVFDQMPEKDIV-SWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWAS 255 (604)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 255 (604)
.-.|++..+..-..++...+.. .-.-+.++|...|++... ..-.|....+..+.. +...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHHH
Confidence 3446666666654444332222 222234666666665531 011233222222222 22222 44555
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 044872 256 SFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-----DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ 330 (604)
Q Consensus 256 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 330 (604)
+..+..+ .++......+..+|...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 5554443 334444457777888888888888888876432 345666777888889999999999998887 56
Q ss_pred C-----CHHHHHHHHHH--HhccC--cHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 044872 331 P-----NGNTFVGLLCG--CTHAG--LVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM--- 397 (604)
Q Consensus 331 p-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--- 397 (604)
| +..+...+..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 35566666655 33334 888889999988754 344333334444788889999998888765 21
Q ss_pred -------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 398 -------EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 398 -------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.| |+.+...++......|+ .|.++++++.+..|+++..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 44466566666666676 7888999999999988643
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=8.6e-08 Score=90.74 Aligned_cols=239 Identities=6% Similarity=-0.037 Sum_probs=163.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMA 284 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 284 (604)
.-..-.|.+..++.-...+. ... +.....-+.+++...|..... ..-.|.......+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~--~~~-~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS--KVT-DNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS--CCC-CHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC--ccc-hHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 34455688888877433221 112 223333455666666665421 112233334443333 33333
Q ss_pred HHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 285 QACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 285 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
|...|++... ++..++..+..++...|++++|++++.+.+..|..++ ...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777887664 3455566777889999999999999999877554334 4567778889999999999999999998
Q ss_pred hhcCCCC-----chHHHHHHHHH--Hhh--cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 361 RVFSLTP-----MIEHYGCMVDL--LGR--SGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 361 ~~~~~~p-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
+. .| +..+...|..+ ... .+++.+|..+|+++ ...|+..+-..++.++...|++++|+..++.+.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 53 66 34455555544 233 34999999999999 44466334344555889999999999999988876
Q ss_pred ----------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 431 ----------EPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 431 ----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+|+++.++..++.+....|+ +|.+++.++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 58899999888888888897 8999999998753
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=2.4e-08 Score=95.79 Aligned_cols=175 Identities=9% Similarity=-0.018 Sum_probs=137.3
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 044872 284 AQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 284 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 362 (604)
+.....+......+...+..+...+.+.|++++|+..|++..+ ..| +...+..+...+...|++++|...++.+...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444444444444455666777788889999999999999988 456 4567788888999999999999999988743
Q ss_pred cCCCCchHHHHHHH-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--chh
Q 044872 363 FSLTPMIEHYGCMV-DLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN--SGN 437 (604)
Q Consensus 363 ~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~ 437 (604)
.|+........ ..+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 45544333322 3466778888888888776 3345 56789999999999999999999999999999987 789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+..++.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887643
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=5.3e-08 Score=80.78 Aligned_cols=131 Identities=15% Similarity=0.192 Sum_probs=102.2
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLL 379 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 379 (604)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667777888888888888888887643 235567777778888888889998888888753 133466777788888
Q ss_pred hhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 380 GRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8999999999988877 223 35678888888899999999999999999988875
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=5.2e-09 Score=113.27 Aligned_cols=167 Identities=11% Similarity=-0.008 Sum_probs=133.5
Q ss_pred HhcCCHHHHHHHHHhcC--------C---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 044872 278 AKCGRMAQACKVFREMK--------D---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTH 345 (604)
Q Consensus 278 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 345 (604)
...|++++|.+.|++.. + .+...|..+...|.+.|++++|++.|++..+ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 66788888988888775 2 3556788888888899999999999999887 345 45677788888889
Q ss_pred cCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEH 422 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~ 422 (604)
.|++++|...|+.+.+. .| +...+..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988753 45 46778888888999999998 8888877 4445 45688888889999999999999
Q ss_pred HHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 423 VLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
.++++++++|++..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999988899999999877665
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=3.4e-08 Score=86.98 Aligned_cols=157 Identities=13% Similarity=0.010 Sum_probs=99.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH-H
Q 044872 302 NAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL-L 379 (604)
Q Consensus 302 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~ 379 (604)
..+...+.+.|++++|+..|++..+ ..| +...+..+..++...|++++|...++.+.+. .|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3344455556666666666655544 233 2344555555666666666666666655532 2222222211111 1
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC--chhHHHHHHHHHhcCChHHHH
Q 044872 380 GRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN--SGNYVLLSNIYSASHKWNDAA 455 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 455 (604)
...+...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222223356666655 3345 46788889999999999999999999999999875 558999999999999999999
Q ss_pred HHHHHHhh
Q 044872 456 KIRSMMGD 463 (604)
Q Consensus 456 ~~~~~m~~ 463 (604)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 100
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=3e-08 Score=84.51 Aligned_cols=102 Identities=10% Similarity=-0.007 Sum_probs=91.0
Q ss_pred CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 364 SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 55664 556777888899999999999999988 4455 57799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
++.+|.+.|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.81 E-value=2.5e-06 Score=88.04 Aligned_cols=100 Identities=9% Similarity=-0.002 Sum_probs=63.3
Q ss_pred hcC-CchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hHHH
Q 044872 7 SND-CFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGY-LADA 84 (604)
Q Consensus 7 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A 84 (604)
+.| +.+.|..+|+.+... -|. ++.+.+.++|+..+.. .|+..+|...+..-.+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377778888877663 233 7899999999988774 4688888888877766653 3445
Q ss_pred HHHhccCC------CCCcccHHHHHHHHH----hCCChhHHHHHHHHHHH
Q 044872 85 LKVFDDIP------DKNVVSWTAIISGYI----NEGNLEEAINMFRRLLH 124 (604)
Q Consensus 85 ~~~f~~~~------~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 124 (604)
..+|+... ..+...|...+..+. .+++.+.+..+|++.+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 55665432 135567777776543 23567778888888876
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=8.1e-09 Score=88.34 Aligned_cols=123 Identities=12% Similarity=0.007 Sum_probs=101.9
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHK 415 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 415 (604)
|...+...|++++|+..++... ...|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3445667889999999999876 33454 345567889999999999999999988 5555 5679999999999999
Q ss_pred ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHhhC
Q 044872 416 KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKI-RSMMGDK 464 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 464 (604)
++++|...|+++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 4777663
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.3e-07 Score=84.38 Aligned_cols=162 Identities=10% Similarity=-0.051 Sum_probs=120.1
Q ss_pred CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----cHHHHHHHHHHchhhcCCCCchHH
Q 044872 296 KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAG----LVDEGRQFFNSMSRVFSLTPMIEH 371 (604)
Q Consensus 296 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 371 (604)
.++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|+...+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355566666666666777777777777777654 44555556666666 5 788888888877642 24556
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHH
Q 044872 372 YGCMVDLLGR----SGQLDEAHELIKSM-PMEPN---AIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 372 ~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
+..|..+|.. .+++++|.++|++. ...|+ ...+..|...|.. .++.++|...++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6667777766 78888888888887 43443 6778888888877 78999999999999888 66778899
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHhhCCC
Q 044872 440 LLSNIYSAS-H-----KWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 440 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 466 (604)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999988764
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.77 E-value=7.7e-08 Score=102.10 Aligned_cols=158 Identities=14% Similarity=0.058 Sum_probs=122.5
Q ss_pred cCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHH
Q 044872 280 CGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
.|++++|.+.|++..+. +...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988753 467888899999999999999999999988 4554 57888888999999999999999
Q ss_pred HHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHc
Q 044872 356 FNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH---KKTDLAEHVLNQLIA 429 (604)
Q Consensus 356 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 429 (604)
++...+. .| +...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998854 34 4678888999999999999999999987 4344 566888899999999 999999999999999
Q ss_pred cCCCCchhHHHHH
Q 044872 430 LEPWNSGNYVLLS 442 (604)
Q Consensus 430 ~~p~~~~~~~~l~ 442 (604)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888887776
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=6e-08 Score=82.59 Aligned_cols=101 Identities=12% Similarity=0.073 Sum_probs=87.9
Q ss_pred CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 364 SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
.+.|+ ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 34453 556677788899999999999999887 3344 67789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++.+|...|++++|.+.+++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=3.4e-07 Score=88.65 Aligned_cols=220 Identities=12% Similarity=-0.007 Sum_probs=150.7
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 044872 210 NGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKV 289 (604)
Q Consensus 210 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 289 (604)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888998888776531 111 0 11135666666665543 4567778888888887
Q ss_pred HHhcCCC-----C----cccHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCcHHHHHHH
Q 044872 290 FREMKDK-----D----QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCG---IQPN--GNTFVGLLCGCTHAGLVDEGRQF 355 (604)
Q Consensus 290 ~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 355 (604)
|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7765431 1 3467788888999999999999998876521 1122 3567778888888 999999999
Q ss_pred HHHchhhcCCCC----chHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 044872 356 FNSMSRVFSLTP----MIEHYGCMVDLLGRSGQLDEAHELIKSM-P---MEPN----AIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 356 ~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
|+...+.+.-.. ...++..+...|.+.|++++|.+.|++. . ..++ ...+..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998765321111 1456788889999999999999999877 1 1122 22566667778888999999999
Q ss_pred HHHHHccCCCCchh-----HHHHHHHHHhcCChHHHHHH
Q 044872 424 LNQLIALEPWNSGN-----YVLLSNIYSASHKWNDAAKI 457 (604)
Q Consensus 424 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 457 (604)
+++.+ +.|..... ...++..+ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88875432 33455555 56776666553
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=2.1e-07 Score=84.45 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=94.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhh
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGR 381 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 381 (604)
+...|...|++++|+..|++..+ ..| +...+..+..++...|++++|...|+.+.+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 77888899999999999999988 456 4567888888999999999999999998853 45 46778888877766
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 382 SGQ--LDEAHELIKSMPMEPNA--IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 382 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.|. .+.+...++... .|+. ..|..+..++...|++++|...|++++++.|++
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 554 445666666663 3333 344555666777899999999999999999964
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.2e-07 Score=100.46 Aligned_cols=188 Identities=12% Similarity=0.037 Sum_probs=144.2
Q ss_pred HccCchHHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhC
Q 044872 243 ASLGALELGVWASSFME--------RNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMN 311 (604)
Q Consensus 243 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 311 (604)
...|++++|...++.+. +.. +.+...+..+...|.+.|++++|...|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 322 33567778888899999999999999998864 3667888888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHH
Q 044872 312 GYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 312 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 389 (604)
|++++|++.|++..+ ..|+ ...+..+..++...|++++ .+.|+.+.+. .| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988 4564 4678888889999999999 9999988853 45 4678888999999999999999
Q ss_pred HHHHhC-CCCCCH-HHHHHHHHHHHhcCC-----hHHHHHHHHHHHccCCCCchh
Q 044872 390 ELIKSM-PMEPNA-IVWGALLAGCRLHKK-----TDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 390 ~~~~~~-~~~p~~-~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~ 437 (604)
+.|++. ...|+. ..|..+..++...++ .+...++.+.+.++.+.++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 999998 667764 477777777766555 344445555555555554443
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.69 E-value=1.4e-07 Score=77.83 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=68.4
Q ss_pred CCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH
Q 044872 365 LTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL 441 (604)
Q Consensus 365 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (604)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 345555666677777777777777665 3333 455677777777777777777777777777777777777777
Q ss_pred HHHHHhcCChHHHHHHHHHHhh
Q 044872 442 SNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 442 ~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777777765
No 110
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=5.1e-07 Score=81.94 Aligned_cols=125 Identities=11% Similarity=0.010 Sum_probs=97.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRL 413 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 413 (604)
+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3444556667778888887777653 456677777778888888888888888776 3333 56688888888889
Q ss_pred cCChHHHHHHHHHHHccCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 414 HKKTDLAEHVLNQLIALEPWNS----------------GNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 414 ~~~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.|++++|...++++++..|.+. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999988887766 788899999999999999999999988754
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.67 E-value=2.2e-07 Score=98.64 Aligned_cols=144 Identities=10% Similarity=-0.034 Sum_probs=82.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHH
Q 044872 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFG 322 (604)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 322 (604)
|++++|...++.+.+... .+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566667777666655432 2455666677777777777777777776654 234566666677777777777777777
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 044872 323 QLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRS---GQLDEAHELIKSM 395 (604)
Q Consensus 323 ~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 395 (604)
+..+. .| +...+..+..++...|++++|.+.++...+. .| +...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77663 34 3456666666777777777777777766643 23 355566666677777 7777777777665
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.66 E-value=5e-07 Score=83.00 Aligned_cols=184 Identities=12% Similarity=0.023 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCc-c---cHHH
Q 044872 232 YYTMVGVLSACASLGALELGVWASSFMERNEFLS--NPVLGTTLIDMYAKCGRMAQACKVFREMKD--KDQ-V---VWNA 303 (604)
Q Consensus 232 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~ 303 (604)
...+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|+++.+ |+. . ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566777889999999999999998865332 245677789999999999999999999864 322 1 3444
Q ss_pred HHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCcHHHHHHHHHHchhhcC
Q 044872 304 VVSGLSM------------------NGYVKVAFGVFGQLEKCGIQPNGN-TFVGLLCGCTHAGLVDEGRQFFNSMSRVFS 364 (604)
Q Consensus 304 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 364 (604)
+..++.. .|+.++|+..|+++.+ ..|+.. ...... ..+ .+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~----~l~------~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK----RLV------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH----HHH------HHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH----HHH------HHHHHHH----
Confidence 5555543 6789999999999998 456543 211111 000 0111111
Q ss_pred CCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCch
Q 044872 365 LTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSG 436 (604)
Q Consensus 365 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 436 (604)
.....+...|.+.|++++|...|+++ ...|+. ..+..+..++...|+.++|...++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11234567888999999999999987 333432 46888889999999999999999999988887653
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.66 E-value=1.4e-07 Score=77.77 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=92.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+......+.+.|++++|++.|+...+. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45543 45666777888888888888888887743 34 4677888888888999999999988877 4444 56689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
..+..++...|++++|.+.|+++++++|+++.++..|.+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999998888777653
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=2.4e-06 Score=81.94 Aligned_cols=160 Identities=8% Similarity=-0.099 Sum_probs=115.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHH
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCG-IQPNGN----TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGC 374 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 374 (604)
.+..+...|++++|..++++..... ..|+.. .+..+...+...+++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556777888888888888877632 122321 2334556667778888998888887753122222 236788
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-----C--CC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-----P--ME-PN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYV 439 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-----~--~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 439 (604)
+...|...|++++|.+.|+++ . .. |. ..+|..+...|...|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888889999999988888776 1 11 22 2377888889999999999999999998754322 56889
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHhh
Q 044872 440 LLSNIYSASHK-WNDAAKIRSMMGD 463 (604)
Q Consensus 440 ~l~~~~~~~g~-~~~A~~~~~~m~~ 463 (604)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999988764
No 115
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=3.2e-07 Score=77.43 Aligned_cols=101 Identities=10% Similarity=-0.051 Sum_probs=87.1
Q ss_pred CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHH
Q 044872 364 SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVL 440 (604)
Q Consensus 364 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 440 (604)
.+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 34453 455666778888999999999999887 3344 66789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
++.+|...|++++|.+.+++..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=6.8e-07 Score=85.85 Aligned_cols=164 Identities=7% Similarity=-0.102 Sum_probs=119.1
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHhccCcHHHHHHHHHHchhhcC--CCCc--hH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-G----NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFS--LTPM--IE 370 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~~ 370 (604)
.+...+..+...|++++|++.+.+..+.....+ . ..+..+...+...|++++|...++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456677788889999888888777432211 1 1233455566778899999999887764211 1121 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC------Cc
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM----PMEPN-----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW------NS 435 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 435 (604)
.++.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...+++++++.++ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999988776 11222 257888889999999999999999999875432 14
Q ss_pred hhHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 044872 436 GNYVLLSNIYSASHKWNDA-AKIRSMMGD 463 (604)
Q Consensus 436 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 463 (604)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777887754
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.62 E-value=2.5e-07 Score=83.87 Aligned_cols=155 Identities=13% Similarity=0.034 Sum_probs=114.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 044872 305 VSGLSMNGYVKVAFGVFGQLEKCGIQPNG-NTFVG----------------LLCGCTHAGLVDEGRQFFNSMSRVFSLTP 367 (604)
Q Consensus 305 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 367 (604)
...+...|++++|+..|++..+ ..|+. ..+.. +..++...|++++|...|+...+. .|
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p 85 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---AP 85 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC
Confidence 3455677778888888877776 44543 34445 778899999999999999998854 45
Q ss_pred -chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--hHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 368 -MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKK--TDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 368 -~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
+...+..+..+|...|++++|.+.|++. ...| +..+|..+...+...|+ .+.+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 5778889999999999999999999988 4455 46688888888765553 44555666665543332 23556678
Q ss_pred HHHHhcCChHHHHHHHHHHhhCC
Q 044872 443 NIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 443 ~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.++...|++++|...+++..+..
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 88888999999999999998743
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.62 E-value=4.5e-07 Score=79.68 Aligned_cols=154 Identities=14% Similarity=0.014 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH-Hhc
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTA-CTQ 143 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~ 143 (604)
...+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..... |+...+...... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 33445566677777777777777654 355667777777777777777777777765542 333222211111 112
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CC---cchHHHHHHHHHhCCCchHHHH
Q 044872 144 LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KD---IVSWSSMIQGYASNGFPKEALD 218 (604)
Q Consensus 144 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~ 218 (604)
.++...+...++..++.. +.+...+..+...|...|++++|...|+++.+ |+ ...|..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122234566777777654 33567777888888888888888888877654 22 3477788888888888888888
Q ss_pred HHHHHH
Q 044872 219 MFYNMQ 224 (604)
Q Consensus 219 ~~~~m~ 224 (604)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.61 E-value=2.7e-06 Score=77.18 Aligned_cols=171 Identities=11% Similarity=-0.071 Sum_probs=118.6
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-CcccHHHHHHHHHhCC----CHHHHHHHHHHHHH
Q 044872 252 VWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK-DQVVWNAVVSGLSMNG----YVKVAFGVFGQLEK 326 (604)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~ 326 (604)
.+.+....+.| ++..+..|..+|...+++++|...|++..+. ++.++..+...|.. + +.++|+++|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 33444444443 5556666666777777777777777766543 55666666666666 5 78888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhc----cCcHHHHHHHHHHchhhcCCCCc---hHHHHHHHHHHhh----cCCHHHHHHHHHhC
Q 044872 327 CGIQPNGNTFVGLLCGCTH----AGLVDEGRQFFNSMSRVFSLTPM---IEHYGCMVDLLGR----SGQLDEAHELIKSM 395 (604)
Q Consensus 327 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~~ 395 (604)
.| +...+..+...+.. .+++++|..+|+...+. .|. ...+..|..+|.. .+++++|.++|++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 55 45566666666766 77888898888887742 342 5677778888877 78899999999887
Q ss_pred -CCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHccCC
Q 044872 396 -PMEPNAIVWGALLAGCRLH-K-----KTDLAEHVLNQLIALEP 432 (604)
Q Consensus 396 -~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~p 432 (604)
...++...+..|...|... | +.++|...++++.+.++
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3334555667777776543 2 89999999999887754
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.60 E-value=5e-06 Score=79.43 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHH--HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCC----
Q 044872 312 GYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVD--EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQ---- 384 (604)
Q Consensus 312 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 384 (604)
+++++++++++++.+. .| |...+..-.-...+.|.++ ++.++++.+.+.. .-+...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence 4445555555555542 22 3334443333334444444 5555555554320 1123334333333444443
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHccC---CCCchhHHHHHHHHHhcCChHHHHH
Q 044872 385 --LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKT-DLAEHVLNQLIALE---PWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 385 --~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
++++++.++++ ...| |...|+-+...+.+.|+. +......+++.+++ |.++.++..++++|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55666666554 2223 555666666666666553 33444555555554 6666677777777777777777777
Q ss_pred HHHHHhh
Q 044872 457 IRSMMGD 463 (604)
Q Consensus 457 ~~~~m~~ 463 (604)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777654
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.57 E-value=3.1e-07 Score=88.96 Aligned_cols=197 Identities=11% Similarity=-0.041 Sum_probs=148.0
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHH
Q 044872 244 SLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQ 323 (604)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 323 (604)
..|++++|..+++...+.... . .+...++++.|...|... ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 356788888888887664211 1 111158899998887763 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCC--CCc--hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 044872 324 LEKC----GIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSL--TPM--IEHYGCMVDLLGRSGQLDEAHELIKS 394 (604)
Q Consensus 324 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (604)
..+. |-.+. ..+|..+...|...|++++|...|+...+.+.- .|. ..++..+...|.+ |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8652 21111 347888888999999999999999977643211 121 4567788889988 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc------hhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 395 M-PME---PN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS------GNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 395 ~-~~~---p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
. .+. .+ ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 34788888999999999999999999998765432 3667788888999999999999999
Q ss_pred Hh
Q 044872 461 MG 462 (604)
Q Consensus 461 m~ 462 (604)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=9.1e-07 Score=72.02 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGC 411 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~ 411 (604)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|..+++++ ... .+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 455556666667777777777777666431 234556667777777788888888777776 222 3566788888888
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
...|+++.|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 89999999999999999989988888888888776544
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.56 E-value=1.1e-06 Score=75.92 Aligned_cols=127 Identities=9% Similarity=-0.033 Sum_probs=95.9
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4455556666777777777777776643 1224566777777788888888888888776 3333 5668888888999
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHH--HHHHhcCChHHHHHHHHHHhh
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLS--NIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~ 463 (604)
..|++++|...++++++..|.+...+..+. ..+...|++++|.+.+....+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999887775544 448888999999999887654
No 124
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.55 E-value=3.4e-06 Score=80.68 Aligned_cols=162 Identities=11% Similarity=0.012 Sum_probs=107.0
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC--CCcchHH-HHHH
Q 044872 129 PDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE--KDIVSWS-SMIQ 205 (604)
Q Consensus 129 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~ 205 (604)
.+...+..+...+...|+++.|...++.+++.. +.+...+..|...|.+.|++++|...|+++.. |+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344556667777788889999999888888875 34667788888889999999999999988875 4332222 2223
Q ss_pred HHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHH
Q 044872 206 GYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLS-NPVLGTTLIDMYAKCGRMA 284 (604)
Q Consensus 206 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 284 (604)
.+.+.++.++|+..|++..... +.+...+..+..++...|++++|...+..+++..... +...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 4666777888888888777642 2244555566666666666666666666666654322 2445555666666666665
Q ss_pred HHHHHHHh
Q 044872 285 QACKVFRE 292 (604)
Q Consensus 285 ~A~~~~~~ 292 (604)
+|...|++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 55555543
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=2.4e-06 Score=77.48 Aligned_cols=144 Identities=9% Similarity=-0.072 Sum_probs=93.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHH
Q 044872 271 TTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 350 (604)
..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455666777778888877777776677777777777777777777777777776632 223456666666666777777
Q ss_pred HHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 351 EGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 351 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
+|...|+...+...-.+... +...| +...|+ ...|..+...+...|+++.|...++++++
T Consensus 89 ~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77777766654211111000 00000 012333 34777888888899999999999999999
Q ss_pred cCCCC
Q 044872 430 LEPWN 434 (604)
Q Consensus 430 ~~p~~ 434 (604)
+.|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98876
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=1e-06 Score=72.36 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGC 411 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 411 (604)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666677777777777777777643 1234566777777788888888888888776 3333 466888888889
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCCh
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 451 (604)
...|+++.|...++++++..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988999999999888875
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=5.3e-07 Score=88.47 Aligned_cols=126 Identities=10% Similarity=-0.039 Sum_probs=97.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----------------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----------------IEHYGCMVDLLGRSGQLDEAHELIKSM-PM 397 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 397 (604)
.+..+...+...|++++|...|+...+. .|+ ...|..+...|.+.|++++|.+.+++. ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444445555555555555555555432 122 467788888999999999999999887 44
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 044872 398 EP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDA-AKIRSMMGD 463 (604)
Q Consensus 398 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 463 (604)
.| +...|..+..++...|++++|...|+++++++|++..++..++.++.+.|++++| ..+++.|.+
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5678999999999999999999999999999999999999999999999999999 456666643
No 128
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.51 E-value=5.3e-05 Score=78.09 Aligned_cols=336 Identities=10% Similarity=-0.040 Sum_probs=191.2
Q ss_pred CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCC-hHHHHHHHHHHHHh-CCCC-ChhHHHHHHHHHH----hcCCh
Q 044872 9 DCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHD-FQLGVRSHSLIVKA-GLDC-DEFVKTSLLNLYV----HCGYL 81 (604)
Q Consensus 9 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~~~-~~~~~~~li~~~~----~~g~~ 81 (604)
|+++.+..+|++.+.. .|+...|...+.-..+.++ .+....+|+.++.. |..+ +..+|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999874 4788888888887766653 45677888888775 4333 5677888777654 24678
Q ss_pred HHHHHHhccCCC-C--Cc-ccHHHHHHHHH-------------hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 044872 82 ADALKVFDDIPD-K--NV-VSWTAIISGYI-------------NEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQL 144 (604)
Q Consensus 82 ~~A~~~f~~~~~-~--~~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 144 (604)
+.++++|++... | +. ..|......-. ..+.+..|..+++.+...-...+...|...+.--...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999987643 2 11 12222211100 0112223344444333210001222344333332221
Q ss_pred --CC-----hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC-CCc-chHHHHHHHHHhCCCchH
Q 044872 145 --GD-----LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE-KDI-VSWSSMIQGYASNGFPKE 215 (604)
Q Consensus 145 --g~-----~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~g~~~~ 215 (604)
+- .+.+..+++.++... +.+..+|...+..+.+.|+.+.|..+|++... |+. ..|. .|+...+.++
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~ 260 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEA 260 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTH
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhH
Confidence 11 234567888877754 44577787788888888888888888876533 222 2222 2333222222
Q ss_pred HHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-C
Q 044872 216 ALDMFYNMQRE---------NLKP---EYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCG-R 282 (604)
Q Consensus 216 A~~~~~~m~~~---------g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~ 282 (604)
. ++.+.+. +..+ ....|...+....+.+..+.|+.+++.+ +.. ..+..+|.....+-.+++ +
T Consensus 261 ~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 261 V---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp H---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCC
T ss_pred H---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCC
Confidence 2 2222211 0011 1133444555555667788888888888 322 223344443333333333 5
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHc
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSM 359 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 359 (604)
.+.|..+|+...+ .++..|...+.-....|+.+.|..+|+++. .....+...+.--...|+.+.+..+++..
T Consensus 336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888887643 234456666666677788888888888862 23455666666556678888888888776
Q ss_pred hh
Q 044872 360 SR 361 (604)
Q Consensus 360 ~~ 361 (604)
.+
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.51 E-value=1.2e-06 Score=72.31 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAG 410 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~ 410 (604)
..+..+...+...|++++|...|+...+ ..| +...+..+...|...|++++|.+.+++. ...| +...|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4555555566666666666666666553 223 3555666666667777777777776665 2223 45677777788
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCC
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHK 450 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 450 (604)
+...|++++|...++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888776653
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.49 E-value=2.4e-07 Score=88.44 Aligned_cols=190 Identities=7% Similarity=-0.083 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCG 342 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 342 (604)
...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++..+ ..| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34455566666667777777777766542 2455666677777777777777777777766 344 34566666677
Q ss_pred HhccCcHHHHHHHHHHchhhcCCCCch-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVFSLTPMI-EHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
+...|++++|...|+...+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.+.|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 77777777777777766532 1211 011111111111111111111 2222222333333333 333 268899999
Q ss_pred HHHHHHHccCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHhhC
Q 044872 422 HVLNQLIALEPWNSGNYVLLSNIYSAS-HKWNDAAKIRSMMGDK 464 (604)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 464 (604)
+.++++++.+|++......+...+.+. +++++|.++|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777776 7799999999988764
No 131
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.49 E-value=6.4e-05 Score=71.76 Aligned_cols=227 Identities=10% Similarity=0.018 Sum_probs=159.1
Q ss_pred CCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC--chHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc---
Q 044872 211 GFPKEALDMFYNMQRENLKPEYY-TMVGVLSACASLG--ALELGVWASSFMERNEFLSNPVLGTTLIDMY----AKC--- 280 (604)
Q Consensus 211 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~--- 280 (604)
...++|++++.+++.. .|+.. .++.--.++...+ +++++...++.++..... +..+++.--..+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 3345777777777663 45433 3444445555566 777777777777765533 334444333333 444
Q ss_pred CCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc------H
Q 044872 281 GRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGYVK--VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL------V 349 (604)
Q Consensus 281 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~ 349 (604)
++++++..+++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+... -|...+..-.....+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 788899999988865 45667777777777888888 99999999998542 255666655555566665 8
Q ss_pred HHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHHHH
Q 044872 350 DEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDE-AHELIKSM-PM----EPNAIVWGALLAGCRLHKKTDLAEHV 423 (604)
Q Consensus 350 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~~~~~~a~~~ 423 (604)
+++.+.++.+... -+-|...|+.+-.++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8999999988853 23357788888888888888544 55677766 22 24677899999999999999999999
Q ss_pred HHHHHc-cCCCCchhHHHHHH
Q 044872 424 LNQLIA-LEPWNSGNYVLLSN 443 (604)
Q Consensus 424 ~~~~~~-~~p~~~~~~~~l~~ 443 (604)
++.+.+ .+|.....|...++
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHHh
Confidence 999996 79987777665544
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.1e-06 Score=72.11 Aligned_cols=96 Identities=15% Similarity=0.001 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888999998888877 3334 56788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.45 E-value=6.1e-07 Score=78.85 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=82.3
Q ss_pred ccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--HH
Q 044872 345 HAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAG-CRLHKKT--DL 419 (604)
Q Consensus 345 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~~~~--~~ 419 (604)
..|++++|...++...+.. +.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++ +.
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4556666666666655421 223556666667777777777777777665 2223 45567777777 6678887 88
Q ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 420 AEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 420 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|...++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888888888888888888888888888888888888887653
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=2.9e-05 Score=74.39 Aligned_cols=158 Identities=8% Similarity=-0.031 Sum_probs=118.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCc--------c-cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 044872 273 LIDMYAKCGRMAQACKVFREMKDKDQ--------V-VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQ-PN----GNTFVG 338 (604)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~~~~~~~--------~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 338 (604)
.+..+...|++++|...+++..+... . .+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988754211 1 2334566677788999999999999874222 22 236888
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhc----CCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVF----SLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEPN-AIVWG 405 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 405 (604)
+..+|...|++++|..+|+.+.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8899999999999999999887421 11222 346788889999999999999998876 22233 55888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHcc
Q 044872 406 ALLAGCRLHKK-TDLAEHVLNQLIAL 430 (604)
Q Consensus 406 ~ll~~~~~~~~-~~~a~~~~~~~~~~ 430 (604)
.+...+...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 69999999998753
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=3.3e-06 Score=78.84 Aligned_cols=182 Identities=12% Similarity=-0.006 Sum_probs=125.2
Q ss_pred hcCCHHHHHHHHHhcCCC---CcccHHHH-------HHHHHhCCCHHHHHHHHHHHHHCCCCCCH---------------
Q 044872 279 KCGRMAQACKVFREMKDK---DQVVWNAV-------VSGLSMNGYVKVAFGVFGQLEKCGIQPNG--------------- 333 (604)
Q Consensus 279 ~~g~~~~A~~~~~~~~~~---~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--------------- 333 (604)
..++.+.|.+.|.++..- ....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467777777777776542 34566666 3444444444555544444333 33321
Q ss_pred -------HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 044872 334 -------NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNA----I 402 (604)
Q Consensus 334 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 402 (604)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455667788999999999988874 2454335555666888999999999999877433433 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALE--PW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
.+..+..++...|++++|+..|++...-. |. .+.....++.++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67777888999999999999999987533 54 44577889999999999999999999998743
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=1e-06 Score=82.31 Aligned_cols=135 Identities=10% Similarity=-0.079 Sum_probs=99.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc--hHHHHHHHHHHh
Q 044872 303 AVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM--IEHYGCMVDLLG 380 (604)
Q Consensus 303 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 380 (604)
.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 3556677788888888888887663 365544455555788889999999999855431 1 221 235667788899
Q ss_pred hcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 381 RSGQLDEAHELIKSM---PMEPN--AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
+.|++++|++.|++. +..|. ...+.....++...|+.++|...|+++.+.+|+ ......|.
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999987 22253 336777788899999999999999999999997 66555553
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.43 E-value=1.5e-06 Score=69.20 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC--CchhHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW--NSGNYVLLSNI 444 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 444 (604)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777788888888888888876 3233 5668888888999999999999999999999999 88999999999
Q ss_pred HHhc-CChHHHHHHHHHHhhCCC
Q 044872 445 YSAS-HKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 445 ~~~~-g~~~~A~~~~~~m~~~~~ 466 (604)
|.+. |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999987543
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=9.8e-06 Score=77.68 Aligned_cols=160 Identities=8% Similarity=-0.055 Sum_probs=114.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---Cc------ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKDK---DQ------VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGI---QPN--GNT 335 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t 335 (604)
+...+..+...|++++|.+.+....+. .. ..+..+...+...|++++|+..+++...... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566778888999988888754321 11 1233455567788899999999998875321 122 347
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CCC-HH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-----IEHYGCMVDLLGRSGQLDEAHELIKSM-PM------EPN-AI 402 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p~-~~ 402 (604)
+..+...|...|++++|..+|+.+.+.....|+ ..++..+...|.+.|++++|.+.+++. .+ ... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888999999999999999987732111222 257788889999999999999998876 11 111 55
Q ss_pred HHHHHHHHHHhcCChHHH-HHHHHHHHc
Q 044872 403 VWGALLAGCRLHKKTDLA-EHVLNQLIA 429 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 429 (604)
+|..+...+...|++++| ...++++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788888899999999999 777888765
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.40 E-value=1.3e-06 Score=71.36 Aligned_cols=94 Identities=19% Similarity=0.048 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcC
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASH 449 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 449 (604)
+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445667788999999999999888 4445 66789999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCC
Q 044872 450 KWNDAAKIRSMMGDKG 465 (604)
Q Consensus 450 ~~~~A~~~~~~m~~~~ 465 (604)
++++|...+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 100 NANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999987643
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=9.9e-07 Score=90.89 Aligned_cols=116 Identities=10% Similarity=0.010 Sum_probs=88.3
Q ss_pred HHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 044872 342 GCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTD 418 (604)
Q Consensus 342 a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~ 418 (604)
.+...|++++|.+.|++..+. .| +...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345567777777777766643 33 3666777778888888888888888776 4445 4668888999999999999
Q ss_pred HHHHHHHHHHccCCCCchhHHHHHHH--HHhcCChHHHHHHHHH
Q 044872 419 LAEHVLNQLIALEPWNSGNYVLLSNI--YSASHKWNDAAKIRSM 460 (604)
Q Consensus 419 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 460 (604)
+|.+.++++++++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999999884
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=3e-06 Score=70.57 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=84.0
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34667777788888888888888888876 3334 567888888899999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.37 E-value=2.3e-06 Score=74.06 Aligned_cols=96 Identities=11% Similarity=0.043 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666677777788888888887776 3334 56678888888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888888888763
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.36 E-value=4.2e-06 Score=67.16 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555566666666666666655 2222 455666666666666777777777777666666666666667777777
Q ss_pred cCChHHHHHHHHHHhhC
Q 044872 448 SHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 448 ~g~~~~A~~~~~~m~~~ 464 (604)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777776666553
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=7.3e-07 Score=75.78 Aligned_cols=108 Identities=12% Similarity=-0.036 Sum_probs=83.2
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 44543 45666667788888888888888887743 34 5667777888888889999998888877 3344 45678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
..+..++...|++++|...+++++++.|+++....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 88888999999999999999999999998765533
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.35 E-value=3.9e-06 Score=68.15 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567778889999999999999999987 3233 57789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 146
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=1.3e-06 Score=71.88 Aligned_cols=94 Identities=10% Similarity=-0.003 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-------hhHHH
Q 044872 370 EHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS-------GNYVL 440 (604)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-------~~~~~ 440 (604)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777788888888888888776 4444 466888888888899999999999999988877654 36677
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 044872 441 LSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 441 l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888889999999999888765
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.34 E-value=8.9e-06 Score=72.81 Aligned_cols=152 Identities=10% Similarity=-0.055 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhc---CCCC-chHHHHHHHHHHhhcCCHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF---SLTP-MIEHYGCMVDLLGRSGQLD 386 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~ 386 (604)
.|++++|.++++.+.. .......++..+...+...|++++|...++...+.. +..| ....+..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333322 111123444555555555566666555555444311 1112 1334555666677777777
Q ss_pred HHHHHHHhC-C---CCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHHccC--CCC----chhHHHHHHHHHhcCCh
Q 044872 387 EAHELIKSM-P---MEP-N----AIVWGALLAGCRLHKKTDLAEHVLNQLIALE--PWN----SGNYVLLSNIYSASHKW 451 (604)
Q Consensus 387 ~A~~~~~~~-~---~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~ 451 (604)
+|.+.+++. . ..+ + ...+..+...+...|++++|...+++.++.. ..+ ..++..++.+|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 777666654 1 112 2 2356667777888888888888888887542 122 22457788899999999
Q ss_pred HHHHHHHHHHhh
Q 044872 452 NDAAKIRSMMGD 463 (604)
Q Consensus 452 ~~A~~~~~~m~~ 463 (604)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887765
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=4.5e-06 Score=68.81 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=88.7
Q ss_pred CchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667888889999999999999999987 5555 677899999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhhC
Q 044872 445 YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 445 ~~~~g~~~~A~~~~~~m~~~ 464 (604)
|.+.|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.32 E-value=9.7e-06 Score=64.97 Aligned_cols=110 Identities=14% Similarity=0.058 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGC 411 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 411 (604)
..+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555666667777777777666543 1224556666677777777777777777766 2233 466788888888
Q ss_pred HhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 412 RLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 412 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
...|++++|...++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8999999999999999999998887777766554
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=5.9e-06 Score=69.60 Aligned_cols=95 Identities=13% Similarity=-0.010 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
...+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455556666666777777777777665 44555 4566666667777777777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 044872 444 IYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (604)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777665
No 151
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.31 E-value=3.1e-06 Score=71.93 Aligned_cols=104 Identities=11% Similarity=0.020 Sum_probs=87.0
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+..+...+...|++++|...|+.+.+. .| +...|..+..+|.+.|++++|.+.|++. .+.| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45654 46777778889999999999999998853 45 4778888999999999999999999988 4445 45688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCc
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 435 (604)
..+..++...|++++|...|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8999999999999999999999999998753
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.2e-05 Score=67.66 Aligned_cols=112 Identities=13% Similarity=-0.056 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGA 406 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 406 (604)
...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34455555555566666666666665552 2343 455666667777777777777777665 3333 5667888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA 447 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 447 (604)
+...+...|++++|...++++++++|++...+..+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 88888899999999999999999999887777777666543
No 153
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=5.1e-06 Score=74.46 Aligned_cols=152 Identities=12% Similarity=0.008 Sum_probs=94.0
Q ss_pred hcCCHHHHHH---HHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHhccCcHH
Q 044872 279 KCGRMAQACK---VFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK----CGIQP-NGNTFVGLLCGCTHAGLVD 350 (604)
Q Consensus 279 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p-~~~t~~~ll~a~~~~g~~~ 350 (604)
..|++++|.+ .+..-+......+..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223345666666677777777777777776654 12222 2245666667777788888
Q ss_pred HHHHHHHHchhhc---CCCC--chHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCCh
Q 044872 351 EGRQFFNSMSRVF---SLTP--MIEHYGCMVDLLGRSGQLDEAHELIKSM----PMEPNA----IVWGALLAGCRLHKKT 417 (604)
Q Consensus 351 ~a~~~~~~~~~~~---~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~----~~~~~ll~~~~~~~~~ 417 (604)
+|...++...+.. +-.| ....+..+...+...|++++|.+.+++. +..++. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8888777665431 2111 1334666777788888888888877765 111222 2456677778888999
Q ss_pred HHHHHHHHHHHcc
Q 044872 418 DLAEHVLNQLIAL 430 (604)
Q Consensus 418 ~~a~~~~~~~~~~ 430 (604)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887754
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=5.5e-06 Score=74.19 Aligned_cols=168 Identities=8% Similarity=-0.058 Sum_probs=100.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCC---CcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHH
Q 044872 276 MYAKCGRMAQACKVFREMKDK---DQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEG 352 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 352 (604)
.....|+++++.+.++.-.+. ....|..+...+...|++++|+..|++.... .|+...+... ....-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHHH
Confidence 344455555555555433221 3345666666677777777777777777662 2321100000 00000
Q ss_pred HHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHcc
Q 044872 353 RQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIAL 430 (604)
Q Consensus 353 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 430 (604)
. .. .....+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++
T Consensus 83 ~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 00 01345667778888889999998888877 3334 5668888999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHH-HHHHHHhhC
Q 044872 431 EPWNSGNYVLLSNIYSASHKWNDAA-KIRSMMGDK 464 (604)
Q Consensus 431 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 464 (604)
+|+++..+..+..++...|+.+++. ..++.|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888887777 555555443
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.27 E-value=6.2e-06 Score=72.23 Aligned_cols=127 Identities=7% Similarity=0.039 Sum_probs=98.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHH-HhhcCCH--
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDL-LGRSGQL-- 385 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 385 (604)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 35678888999998887742 2355778888888999999999999999887542 2346677777777 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
++|.+.+++. ...| +...|..+...+...|+++.|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999887 3344 466888889999999999999999999999999876543
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=6.3e-06 Score=67.50 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 368 MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3566777888999999999999999987 3334 6778899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhhC
Q 044872 446 SASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 446 ~~~g~~~~A~~~~~~m~~~ 464 (604)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998874
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=5.1e-06 Score=70.01 Aligned_cols=90 Identities=11% Similarity=-0.006 Sum_probs=71.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHcc-------CC
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM-PMEPN-------------AIVWGALLAGCRLHKKTDLAEHVLNQLIAL-------EP 432 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~p 432 (604)
.....+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++ +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3344455566666666666554 21222 238888889999999999999999999998 99
Q ss_pred CCchhH----HHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 433 WNSGNY----VLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 433 ~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++..+| ...+.++...|++++|...|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999 9999999999999999999999976
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=1.2e-05 Score=69.36 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3578888888999999999999999999999999999999999999999999999999988764
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.21 E-value=4.7e-06 Score=70.06 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=81.5
Q ss_pred CCCCH-HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 044872 329 IQPNG-NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVW 404 (604)
Q Consensus 329 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 404 (604)
+.|+. ..+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|.+.|++. ...| +...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 34433 34555566777788888888888877743 33 4666777778888888888888888876 3334 45577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
..+..++...|++++|...+++++++.|+++.......
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 78888899999999999999999999988876655443
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.4e-05 Score=65.43 Aligned_cols=109 Identities=9% Similarity=-0.116 Sum_probs=76.0
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 412 (604)
.+......+...|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4455555666667777777777766642 1223566677777777777777777777766 3334 4567888888888
Q ss_pred hcCChHHHHHHHHHHHccC------CCCchhHHHHHHHH
Q 044872 413 LHKKTDLAEHVLNQLIALE------PWNSGNYVLLSNIY 445 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 445 (604)
..|++++|...++++++++ |++......+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 8999999999999998888 77766666665544
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=1.7e-05 Score=68.53 Aligned_cols=107 Identities=11% Similarity=0.032 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLA 409 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 409 (604)
...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.|++. ...| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345666666777778888888888777643 33 4667777888888888888888888877 3344 4668899999
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHH
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLS 442 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 442 (604)
.+...|++++|...++++++++|++...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887655443
No 162
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.16 E-value=2.5e-05 Score=67.18 Aligned_cols=127 Identities=8% Similarity=-0.114 Sum_probs=80.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHH
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLL 379 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 379 (604)
.|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...+..+...|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45555666667777777777777776632 224556666667777777777777777776643 123455667777777
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCChHHHHHHHHHHHc
Q 044872 380 GRSGQLDEAHELIKSM-PMEP-NAIVWGA--LLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 380 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7788888888777766 2233 3334433 33336667788888887776543
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.16 E-value=8.4e-06 Score=83.93 Aligned_cols=113 Identities=9% Similarity=-0.073 Sum_probs=57.0
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCH
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~ 385 (604)
+.+.|++++|++.|++..+ ..|+ ..++..+..++...|++++|.+.++...+. .| +...+..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCH
Confidence 4455566666666666555 2332 445555555666666666666666655532 23 344555555666666666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHH--HHhcCChHHHHHHHH
Q 044872 386 DEAHELIKSM-PMEP-NAIVWGALLAG--CRLHKKTDLAEHVLN 425 (604)
Q Consensus 386 ~~A~~~~~~~-~~~p-~~~~~~~ll~~--~~~~~~~~~a~~~~~ 425 (604)
++|.+.+++. ...| +...+..+..+ +...|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666554 2222 12233333333 555566666666666
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=8.4e-06 Score=66.93 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=65.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC---chhHHHHHHHHH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEPNA----IVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN---SGNYVLLSNIYS 446 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 446 (604)
+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445566777777777777765 222322 366667777788888888888888888888877 666788888888
Q ss_pred hcCChHHHHHHHHHHhhC
Q 044872 447 ASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 447 ~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|...++.+.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888887764
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=2.7e-05 Score=79.14 Aligned_cols=163 Identities=6% Similarity=-0.155 Sum_probs=111.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHH----HHHHHHHHHhccCcHHHHHHHHHHchhh---cCCCCc-hHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKC-GIQPNGN----TFVGLLCGCTHAGLVDEGRQFFNSMSRV---FSLTPM-IEH 371 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p~-~~~ 371 (604)
+..+...|...|++++|.+.+.++... +..++.. +...+-..+...|+++++..++...... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777788888888888888776541 1112221 2223333445678888888888765431 122222 456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccC---CCC----ch
Q 044872 372 YGCMVDLLGRSGQLDEAHELIKSM-------PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALE---PWN----SG 436 (604)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 436 (604)
+..+...|...|++++|.+++++. ..+|. ..++..++..|...|++++|..++++++... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 777888999999999999988765 11232 3377888888999999999999999887543 222 23
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+..++..+...|++++|...+....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566778888899999999988877754
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=1.9e-06 Score=69.80 Aligned_cols=83 Identities=13% Similarity=0.051 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHH
Q 044872 382 SGQLDEAHELIKSM-PM---EPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAK 456 (604)
Q Consensus 382 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 456 (604)
.|++++|.+.|++. .. .|+ ...|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666665 33 243 34667777777777888888888888877778777777778888888888888888
Q ss_pred HHHHHhhC
Q 044872 457 IRSMMGDK 464 (604)
Q Consensus 457 ~~~~m~~~ 464 (604)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777653
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=2.1e-05 Score=80.56 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456778888899999999999999887 3344 56789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHhh
Q 044872 447 ASHKWNDAAK-IRSMMGD 463 (604)
Q Consensus 447 ~~g~~~~A~~-~~~~m~~ 463 (604)
+.|+++++.+ .++.|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999998875 4555544
No 168
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.13 E-value=0.00046 Score=66.64 Aligned_cols=215 Identities=9% Similarity=-0.022 Sum_probs=140.4
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-C-ChHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREH-DFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHC-G-YLAD 83 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~~~ 83 (604)
..+..++|++++++++...+. +..+|+.--..+...+ .++++..+++.++... +-+..+|+.....+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344556888888888886433 4445665555555666 5888888888888764 33566777776666665 6 7888
Q ss_pred HHHHhccCCCC---CcccHHHHHHHHHhCCChh--------HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC------
Q 044872 84 ALKVFDDIPDK---NVVSWTAIISGYINEGNLE--------EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGD------ 146 (604)
Q Consensus 84 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 146 (604)
++.+++.+.+. |-.+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 88888887664 4556665555555555555 888888888886543 66677777777777765
Q ss_pred -hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHccCCC---------CC
Q 044872 147 -LSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNM--------------------EKARRVFDQMPE---------KD 196 (604)
Q Consensus 147 -~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~--------------------~~A~~~~~~~~~---------~~ 196 (604)
++++.+....++... +.|...|+-+-..+.+.|+- ........++.. ++
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 567777777777765 44777787777777776653 333344444332 23
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHH
Q 044872 197 IVSWSSMIQGYASNGFPKEALDMFYNMQR 225 (604)
Q Consensus 197 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 225 (604)
...+..|+..|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34566677777777777777777777654
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=0.0012 Score=63.82 Aligned_cols=173 Identities=10% Similarity=0.007 Sum_probs=91.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C
Q 044872 205 QGYASNGFPKEALDMFYNMQRENLKPEYY-TMVGVLSACASLG-ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKC-G 281 (604)
Q Consensus 205 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 281 (604)
....+.+..++|++++.+++.. .|+.. .++.--..+...+ .++++...++.++..... +..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcC
Confidence 3334445556788888887764 44433 3444444444555 477777777777765533 455555555555554 5
Q ss_pred -CHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-
Q 044872 282 -RMAQACKVFREMKDKD---QVVWNAVVSGLSMNGYVK--------VAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL- 348 (604)
Q Consensus 282 -~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 348 (604)
+++++.++++.+.+.| ..+|+--.-.+.+.|..+ ++++.++++.+.. .-|...++.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 6777777777777643 344544333333333333 6666666666632 1244455544444444443
Q ss_pred ------HHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCC
Q 044872 349 ------VDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQ 384 (604)
Q Consensus 349 ------~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 384 (604)
++++.++++.+... .| |...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCC
Confidence 45555555555432 22 34444444444444443
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.11 E-value=1.2e-05 Score=65.76 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------chhHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-------SGNYV 439 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 439 (604)
...+..+...+...|++++|...|++. ... .+...|..+...+...|+++.|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666777888888888888888876 223 356788888888999999999999999999887766 77889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 440 LLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.++.+|...|++++|.+.++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998874
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=7.5e-06 Score=73.29 Aligned_cols=119 Identities=8% Similarity=-0.088 Sum_probs=86.5
Q ss_pred hccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCCC--------------HHHHH
Q 044872 344 THAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-P---MEPN--------------AIVWG 405 (604)
Q Consensus 344 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~--------------~~~~~ 405 (604)
...|.++.+.+.|+..... .......+..+...+.+.|++++|.+.|++. . ..|+ ...|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555555433221 0112344566667788888888888888776 2 2221 26788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 406 ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 406 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
.+..++...|++++|...++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999998764
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.10 E-value=1.7e-05 Score=75.42 Aligned_cols=103 Identities=11% Similarity=-0.090 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 044872 332 NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALL 408 (604)
Q Consensus 332 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 408 (604)
+...+..+...+...|++++|...|+...+. .| +...|..+...|.+.|++++|.+.+++. ...| +...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455566666677777777777777766643 33 4556666667777777777777777665 4444 344666666
Q ss_pred HHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 409 AGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 409 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.++...|++++|...++++++++|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 66777777777777777777766655433
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00062 Score=65.37 Aligned_cols=190 Identities=11% Similarity=0.013 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCC-HHHHHHHH
Q 044872 248 LELGVWASSFMERNEFLSNPVLGTTLIDMYAKCG--RMAQACKVFREMKD---KDQVVWNAVVSGLSMNGY-VKVAFGVF 321 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 321 (604)
++.+..+++.++..... +..+++.-.-.+.+.| .++++..+++.+.+ +|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45566666666654432 4555555555555666 36777777777654 355566666666666666 47788888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhc----
Q 044872 322 GQLEKCGIQPNGNTFVGLLCGCTHA--------------GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRS---- 382 (604)
Q Consensus 322 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~---- 382 (604)
.++.+.. +-|...|+.....+.+. +.++++.+++...... .| |...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 8777743 12444444443333332 4566777777766632 33 455555444444443
Q ss_pred -------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 383 -------GQLDEAHELIKSM-PMEPNAIVWGALLAG-----CRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 383 -------g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
+.++++++.++++ ...||. .|..+..+ ....+..++....+.++.+++|...+-|.-+..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3466677766666 444553 34322211 123456667777777777777766555555443
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.09 E-value=2.4e-05 Score=64.86 Aligned_cols=100 Identities=9% Similarity=-0.137 Sum_probs=73.2
Q ss_pred CHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 044872 332 NGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLA 409 (604)
Q Consensus 332 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 409 (604)
+...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 45566666677777777777777777766431 223566777777778888888888887776 3334 4668888888
Q ss_pred HHHhcCChHHHHHHHHHHHccCCC
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+...|+++.|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999998888776
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.05 E-value=3.1e-05 Score=66.03 Aligned_cols=93 Identities=16% Similarity=0.071 Sum_probs=63.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHccCC------CCch
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM----PMEPN----AIVWGALLAGCRLHKKTDLAEHVLNQLIALEP------WNSG 436 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p------~~~~ 436 (604)
.+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555666666666666666554 11111 33566677778888888888888888775421 1235
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 437 NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 437 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677889999999999999999888765
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=1.7e-05 Score=64.91 Aligned_cols=108 Identities=10% Similarity=0.020 Sum_probs=60.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM-PM----EPN----AIVWGA 406 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 406 (604)
+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444455555555555544432 1123344445555555555555555555544 11 122 456677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
+...+...|+++.|...++++++..| ++.....+..+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 77778888888888888888888777 4555555555443
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=2.2e-05 Score=62.18 Aligned_cols=67 Identities=16% Similarity=0.020 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHHccCCCCc
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP---NAIVWGALLAGCRLH-KKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 435 (604)
...+..+...|...|++++|.+.+++. ...| +...|..+...+... |++++|.+.++++++..|.++
T Consensus 40 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 40 SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 334444555555556666666555554 2223 355667777777777 777777777777777777543
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.02 E-value=2.6e-05 Score=76.28 Aligned_cols=125 Identities=7% Similarity=-0.032 Sum_probs=85.9
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHchhhc
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN----------------GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVF 363 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 363 (604)
.|..+...|.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...++.+.+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 4445555555566666666666666552 232 356777777788888888888888877753
Q ss_pred CCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHc
Q 044872 364 SLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLA-EHVLNQLIA 429 (604)
Q Consensus 364 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 429 (604)
.| +...+..+..+|...|++++|.+.|++. .+.| +...+..+...+...|+.++| ...++++++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 4667777788888888888888888877 4444 456777788888888888888 456666653
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.01 E-value=4.2e-05 Score=62.58 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=63.9
Q ss_pred HHHhccCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----AIVWGALLAGCRLH 414 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~ 414 (604)
..+...|++++|...|+.+.+...-.+. ...+..+...|.+.|++++|.+.|++. ...|+ ...+..+...+...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444556666666666655543111110 134555666677777777777777665 22232 44677777788888
Q ss_pred CChHHHHHHHHHHHccCCCCchhHHHHHH
Q 044872 415 KKTDLAEHVLNQLIALEPWNSGNYVLLSN 443 (604)
Q Consensus 415 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 443 (604)
|++++|...++++++..|+++........
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 99999999999998888887655444433
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.01 E-value=2.5e-05 Score=77.39 Aligned_cols=89 Identities=13% Similarity=0.019 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...|..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 567888889999999999999999887 5556 46688999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHH
Q 044872 447 ASHKWNDAAKI 457 (604)
Q Consensus 447 ~~g~~~~A~~~ 457 (604)
..++.+++.+.
T Consensus 353 ~~~~~~~a~k~ 363 (370)
T 1ihg_A 353 KIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 98888877653
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=2.3e-05 Score=64.29 Aligned_cols=58 Identities=9% Similarity=-0.030 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
|..+...+.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33445555555555555555555554 2332 3344445555555555555555555444
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.98 E-value=1.3e-05 Score=67.49 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PM-------EPNAI-VW----GALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~p~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
.|..+..++.+.|++++|+..+++. .+ .|+.. .| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666777777777777666655 33 78755 88 899999999999999999999999999988765
Q ss_pred HHHH
Q 044872 438 YVLL 441 (604)
Q Consensus 438 ~~~l 441 (604)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4444
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.97 E-value=1.3e-05 Score=78.61 Aligned_cols=147 Identities=9% Similarity=-0.101 Sum_probs=80.9
Q ss_pred cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 298 QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
...|..+...+.+.|++++|+..|++... ..|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566667777788888888888888777 4455432 233444444433221 135777888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH-HhcCChHHH
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY-SASHKWNDA 454 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 454 (604)
.|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...|+++++++|+++.++..|..+. ...+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998877 4344 5668888889999999999999999999999999888888888774 455677788
Q ss_pred HHHHHHHhhC
Q 044872 455 AKIRSMMGDK 464 (604)
Q Consensus 455 ~~~~~~m~~~ 464 (604)
..++++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887654
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.94 E-value=2.5e-05 Score=63.47 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=57.2
Q ss_pred HHHHHhccCcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044872 339 LLCGCTHAGLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHK 415 (604)
Q Consensus 339 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~ 415 (604)
+...+...|++++|...|+...+. .| +...+..+..++.+.|++++|...|++. ...| +...|..+...+...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334455566666666666665532 33 3555566666666777777777776665 3344 4557777777788888
Q ss_pred ChHHHHHHHHHHHccCCCC
Q 044872 416 KTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 416 ~~~~a~~~~~~~~~~~p~~ 434 (604)
++++|...++++++.+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 8888888888888887765
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.94 E-value=8.6e-05 Score=75.96 Aligned_cols=123 Identities=8% Similarity=-0.017 Sum_probs=92.7
Q ss_pred HhccCcHHHHHHHHHHchhhc--CC---CCc-hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHH
Q 044872 343 CTHAGLVDEGRQFFNSMSRVF--SL---TPM-IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPNAI-VWGA 406 (604)
Q Consensus 343 ~~~~g~~~~a~~~~~~~~~~~--~~---~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ 406 (604)
+...|++++|..+++...+.. -+ .|+ ..+++.|..+|...|++++|..++++. +..|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777777777776554321 11 122 456778888888888888888887765 3456554 7899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHc-----cCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 407 LLAGCRLHKKTDLAEHVLNQLIA-----LEPWNSG---NYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 407 ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|...|..+|++++|+.+++++++ ++|+.+. ....+..++...|++++|..++.+++++-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875 5677654 44568888899999999999999998753
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=6.6e-06 Score=65.45 Aligned_cols=93 Identities=13% Similarity=-0.047 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC------chhHH
Q 044872 368 MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN------SGNYV 439 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 439 (604)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777778888899999999988877 3344 56788889999999999999999999999999988 77788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 044872 440 LLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~ 460 (604)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877776655443
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=5.8e-05 Score=64.24 Aligned_cols=97 Identities=7% Similarity=0.004 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHH
Q 044872 335 TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM-------PMEP-NAI 402 (604)
Q Consensus 335 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 402 (604)
++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444455555556666666655554432111111 234555556666677777776666554 1111 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccC
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALE 431 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 431 (604)
++..+...+...|++++|...+++.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56667777888888888888888877643
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.88 E-value=2.1e-05 Score=63.41 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=60.9
Q ss_pred cCcHHHHHHHHHHchhhcCC-CC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVFSL-TP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAE 421 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~ 421 (604)
.|++++|+..|+...+. +. .| +...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666531 10 23 2455666777777777888887777776 3334 4557777888888888999999
Q ss_pred HHHHHHHccCCCCchhH
Q 044872 422 HVLNQLIALEPWNSGNY 438 (604)
Q Consensus 422 ~~~~~~~~~~p~~~~~~ 438 (604)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99998888888876543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=3e-05 Score=75.93 Aligned_cols=151 Identities=9% Similarity=-0.058 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 044872 267 PVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHA 346 (604)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 346 (604)
...+..+...|.+.|++++|...|++....+.... .+...|+.+++...+. ...+..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788888999999999999998654222111 1223344444433221 13567777888889
Q ss_pred CcHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHH-HHhcCChHHHHH
Q 044872 347 GLVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAI-VWGALLAG-CRLHKKTDLAEH 422 (604)
Q Consensus 347 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~-~~~~~~~~~a~~ 422 (604)
|++++|...++...+. .| +...|..+..+|...|++++|.+.|++. .+.|+.. .+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888753 34 5677888889999999999999999888 5566543 55555544 345567788889
Q ss_pred HHHHHHccCCCCc
Q 044872 423 VLNQLIALEPWNS 435 (604)
Q Consensus 423 ~~~~~~~~~p~~~ 435 (604)
.|+++++..|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999999888764
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=3e-05 Score=66.73 Aligned_cols=77 Identities=22% Similarity=0.072 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCc-hhHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNS-GNYVLLSNIY 445 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 445 (604)
...|..+..+|.+.|++++|...+++. ...| +...|..+..++...|+++.|...++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888889999999999988877 4445 566889999999999999999999999999999887 4444444433
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00026 Score=71.71 Aligned_cols=156 Identities=12% Similarity=-0.013 Sum_probs=111.5
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchH-
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQPN----------------GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIE- 370 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~- 370 (604)
+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++..
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 4455667777777766665321110 12366788899999999999999998875433333322
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHcc------CCC
Q 044872 371 ---HYGCMVDLLGRSGQLDEAHELIKSM-------PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIAL------EPW 433 (604)
Q Consensus 371 ---~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~p~ 433 (604)
+.+.+...+...|++++|.++++.. +..+. ..++..|...+...|++++|...++++... .|.
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 2333344555678999999888765 22333 447888899999999999999999998742 122
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 434 NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
....+..++.+|...|++++|..++++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 346788999999999999999999998865
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=7.4e-05 Score=58.20 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56688999999999999999999999999999999999999999999999999999999988763
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.82 E-value=0.0026 Score=61.02 Aligned_cols=179 Identities=12% Similarity=0.003 Sum_probs=127.3
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-HHHHHHHH
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNG--YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGL-VDEGRQFF 356 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 356 (604)
++++..+++.+.. ++..+|+.-.-.+...| .+++++.+++++.+.. +-|...|+.-...+...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777654 46678887777777777 4899999999999843 2356677666666667777 68999999
Q ss_pred HHchhhcCCCCchHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 044872 357 NSMSRVFSLTPMIEHYGCMVDLLGRS--------------GQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH------ 414 (604)
Q Consensus 357 ~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 414 (604)
+.+.+.. +-|...|+....++.+. +.++++++.+++. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998641 33566676666555554 5688899998877 3344 677887665555444
Q ss_pred -----CChHHHHHHHHHHHccCCCCchhHHHHHHH---HHhcCChHHHHHHHHHHhhC
Q 044872 415 -----KKTDLAEHVLNQLIALEPWNSGNYVLLSNI---YSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 415 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~ 464 (604)
+.++++++.++++++++|++.-.+..++.. ....|..+++...+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 458899999999999999884443333322 23467888889999988863
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.00046 Score=72.34 Aligned_cols=166 Identities=8% Similarity=0.018 Sum_probs=124.9
Q ss_pred HHHHHHHHHhcCC---CCcccHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-
Q 044872 283 MAQACKVFREMKD---KDQVVWNAVVSGLSMNGY----------VKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAG- 347 (604)
Q Consensus 283 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g- 347 (604)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+ ..| +...|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccc
Confidence 4566777766654 234566665555555555 7888888988887 345 4567777666777778
Q ss_pred -cHHHHHHHHHHchhhcCCCC-chHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------
Q 044872 348 -LVDEGRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSG-QLDEAHELIKSM-PMEP-NAIVWGALLAGCRLH-------- 414 (604)
Q Consensus 348 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------- 414 (604)
+++++.+.++.+.+. .| +...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999988854 34 4667777777777888 889999998888 5555 667888877776553
Q ss_pred ------CChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHH
Q 044872 415 ------KKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWND 453 (604)
Q Consensus 415 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 453 (604)
+.++++.+.+++++.++|++..+|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988665
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.79 E-value=0.00014 Score=71.98 Aligned_cols=112 Identities=6% Similarity=-0.046 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEP-NAIVWGALLAGCR 412 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~ 412 (604)
..+..+...+...|++++|...|+...+.. |... .....+++. ...| +..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777665320 1000 000111111 1223 3458888999999
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
..|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999874
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.00012 Score=55.49 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHH
Q 044872 369 IEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYS 446 (604)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 446 (604)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455666777788888888888888776 3333 56678888888999999999999999999999998888888888876
Q ss_pred hcC
Q 044872 447 ASH 449 (604)
Q Consensus 447 ~~g 449 (604)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.79 E-value=0.00024 Score=72.65 Aligned_cols=95 Identities=7% Similarity=-0.086 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCC
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-PMEPN----------------AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 433 (604)
.+..+...|.+.|++++|...|++. ...|+ ...|..+..++.+.|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4455555666666666666666655 11121 468888999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 434 NSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 434 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
++.+|..++.+|...|++++|...|++..+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998753
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.75 E-value=7.1e-05 Score=59.94 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=65.9
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 387 EAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 387 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+|.+.|++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555554 3444 56688888899999999999999999999999999999999999999999999999999988763
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.72 E-value=2e-05 Score=66.17 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=65.7
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHccCCCCchhHHHHHHHHHhc
Q 044872 381 RSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKK----------TDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS 448 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 448 (604)
|.+++++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666655 3334 45566666666665554 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHhhCC
Q 044872 449 H-----------KWNDAAKIRSMMGDKG 465 (604)
Q Consensus 449 g-----------~~~~A~~~~~~m~~~~ 465 (604)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998843
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00019 Score=73.37 Aligned_cols=114 Identities=9% Similarity=0.008 Sum_probs=87.8
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---hhHH
Q 044872 378 LLGRSGQLDEAHELIKSM---------PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNS---GNYV 439 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~ 439 (604)
.+..+|++++|..++++. +..|+.. +++.|...|...|++++|+.+++++++ ++|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 2345444 899999999999999999999999875 456554 5688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 044872 440 LLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLK 509 (604)
Q Consensus 440 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~ 509 (604)
.|+.+|..+|++++|..++++..+-... .-...||...++...+.+...+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998762110 112478988888777766665554
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.62 E-value=0.00031 Score=53.61 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 398 EPNAIVWGALLAGCRLHKK---TDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
.+|...|..+..++...++ .++|..+++++++++|+++.+...++..+.+.|++++|...|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888765554 79999999999999999999999999999999999999999999998654
No 202
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.59 E-value=0.00026 Score=71.24 Aligned_cols=116 Identities=10% Similarity=0.067 Sum_probs=88.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---hh
Q 044872 376 VDLLGRSGQLDEAHELIKSM---------PMEPNA-IVWGALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNS---GN 437 (604)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~ 437 (604)
+.-+.+.|++++|.+++++. +..|+. .+++.|...|...|++++|+.+++++++ +.|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34466778888888888765 122333 3788899999999999999999998874 345544 56
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHH
Q 044872 438 YVLLSNIYSASHKWNDAAKIRSMMGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLK 509 (604)
Q Consensus 438 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~ 509 (604)
+..|+.+|..+|++++|..++++..+--. . +-...||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999876211 0 113479999999888888887775
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00033 Score=55.27 Aligned_cols=66 Identities=14% Similarity=-0.052 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
+...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999998753
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.41 E-value=0.0015 Score=54.23 Aligned_cols=90 Identities=10% Similarity=-0.075 Sum_probs=56.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHccCCCCchhHHHHHHHHHh---
Q 044872 375 MVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRL----HKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSA--- 447 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 447 (604)
|..+|...+.+++|.++|++.-..-+...+..|...|.. .++.++|...++++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444445555555555554212345555555555555 66777777777777665 355677777777777
Q ss_pred -cCChHHHHHHHHHHhhCCC
Q 044872 448 -SHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 448 -~g~~~~A~~~~~~m~~~~~ 466 (604)
.+++++|.+.+++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 7777777777777776654
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.28 E-value=0.00082 Score=50.59 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999998874
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.00067 Score=68.17 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=65.0
Q ss_pred cCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCc---hhHHHHHH
Q 044872 382 SGQLDEAHELIKSM---------PMEPNAI-VWGALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNS---GNYVLLSN 443 (604)
Q Consensus 382 ~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 443 (604)
.|++++|..++++. +..|+.. +++.|..+|...|++++|+.+++++++ ++|+++ ..+..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777776654 3345443 788899999999999999999999874 445554 56888999
Q ss_pred HHHhcCChHHHHHHHHHHhh
Q 044872 444 IYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 444 ~~~~~g~~~~A~~~~~~m~~ 463 (604)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999876
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.26 E-value=0.0002 Score=60.16 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChHHHHHHHHHHHccCCCCc
Q 044872 385 LDEAHELIKSM-PMEPN-AIVWGALLAGCRLH-----------KKTDLAEHVLNQLIALEPWNS 435 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~ 435 (604)
+++|+..|++. .+.|+ ..+|..+..+|... |++++|.+.|+++++++|++.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 34666666555 44443 34666666666655 589999999999999999875
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.25 E-value=0.0026 Score=66.57 Aligned_cols=150 Identities=13% Similarity=-0.005 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCc----------HHHHHHHHHHchhhcCCCCchHHHHHHHHHH
Q 044872 311 NGYVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGCTHAGL----------VDEGRQFFNSMSRVFSLTPMIEHYGCMVDLL 379 (604)
Q Consensus 311 ~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 379 (604)
....++|++.++++.. +.|+. ..|+.--.++...|+ ++++.+.++.+.+. -+.+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3445788999999998 66765 445554445555565 89999999999864 233566777777788
Q ss_pred hhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHccCCCCchhHHHHHHHHHhc------
Q 044872 380 GRSG--QLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHK-KTDLAEHVLNQLIALEPWNSGNYVLLSNIYSAS------ 448 (604)
Q Consensus 380 ~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 448 (604)
.+.| +++++++.++++ ...| +..+|+--.......| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8889 779999999998 3334 7779998888888888 899999999999999999999999999888774
Q ss_pred --------CChHHHHHHHHHHhhC
Q 044872 449 --------HKWNDAAKIRSMMGDK 464 (604)
Q Consensus 449 --------g~~~~A~~~~~~m~~~ 464 (604)
++++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5678898888888753
No 209
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.23 E-value=0.027 Score=44.76 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=103.9
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHH
Q 044872 309 SMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEA 388 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 388 (604)
.-.|..++..++..+...+ .+..-++.++.-....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3467888888888887663 245566666665555666666677777665543332 36666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 389 HELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 389 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
..-+-.++. +......-+.....+|.-++-.+++..++.-+|.++....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666642 44555667788889999999999999987766768899999999999999999999999999999985
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.12 E-value=0.0087 Score=57.70 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=28.1
Q ss_pred CCcccHHHHHHHHH--hCC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 044872 296 KDQVVWNAVVSGLS--MNG---YVKVAFGVFGQLEKCGIQPNG-NTFVGLLCGC 343 (604)
Q Consensus 296 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~ 343 (604)
.+...|...+.+.. ..+ ...+|..+|++..+ ..|+. ..+..+..++
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 46677777776543 223 34788999999988 66764 3444433333
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.11 E-value=0.0021 Score=51.03 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=52.6
Q ss_pred HHHHHHHchhhcCCCC-chHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 044872 352 GRQFFNSMSRVFSLTP-MIEHYGCMVDLLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLI 428 (604)
Q Consensus 352 a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 428 (604)
+...|+...+ ..| +...+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555542 233 3556666667777777777777777766 3333 45577777778888888888888888888
Q ss_pred ccCCC
Q 044872 429 ALEPW 433 (604)
Q Consensus 429 ~~~p~ 433 (604)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77664
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.05 E-value=0.0072 Score=49.96 Aligned_cols=110 Identities=13% Similarity=0.010 Sum_probs=75.9
Q ss_pred CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHH
Q 044872 110 GNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAK----CGNMEKA 185 (604)
Q Consensus 110 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A 185 (604)
+++++|++.|++..+.| .|+.. +...+...+..+.|...++...+.| ++..+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888887776 23322 5555666667777888888877765 56677777777777 6777777
Q ss_pred HHHHccCCC-CCcchHHHHHHHHHh----CCCchHHHHHHHHHHHCC
Q 044872 186 RRVFDQMPE-KDIVSWSSMIQGYAS----NGFPKEALDMFYNMQREN 227 (604)
Q Consensus 186 ~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 227 (604)
.+.|++..+ .+..++..|...|.. .+++++|+..|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777776543 455666677777776 677777777777776654
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.97 E-value=0.0042 Score=62.32 Aligned_cols=93 Identities=10% Similarity=-0.077 Sum_probs=64.3
Q ss_pred cCcHHHHHHHHHHchhhc--CCC---Cc-hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHH
Q 044872 346 AGLVDEGRQFFNSMSRVF--SLT---PM-IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPNAI-VWGALLA 409 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~ 409 (604)
.|++++|..+++...+.. -+. |+ ..+++.|..+|...|++++|..++++. +..|+.. +++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666544321 112 22 356777777888888888887777665 3456654 7889999
Q ss_pred HHHhcCChHHHHHHHHHHHc-----cCCCCchhH
Q 044872 410 GCRLHKKTDLAEHVLNQLIA-----LEPWNSGNY 438 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 438 (604)
.|..+|++++|+.+++++++ ++|+.+.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999875 567776543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0074 Score=60.62 Aligned_cols=100 Identities=12% Similarity=-0.122 Sum_probs=68.0
Q ss_pred HHHhccCcHHHHHHHHHHchhhc--CCCCc----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCHH-HH
Q 044872 341 CGCTHAGLVDEGRQFFNSMSRVF--SLTPM----IEHYGCMVDLLGRSGQLDEAHELIKSM---------PMEPNAI-VW 404 (604)
Q Consensus 341 ~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~ 404 (604)
..+...|++++|...++...+.. -+.|+ ..+++.+..+|...|++++|+.++++. +..|+.. ++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33445667777777766554321 11222 346677777788888888887777655 3445544 78
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHc-----cCCCCchhHHH
Q 044872 405 GALLAGCRLHKKTDLAEHVLNQLIA-----LEPWNSGNYVL 440 (604)
Q Consensus 405 ~~ll~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 440 (604)
+.|...|..+|++++|+.+++++++ ++|+.+.+-..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 8899999999999999999998875 56877655443
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.86 E-value=0.0074 Score=50.01 Aligned_cols=65 Identities=9% Similarity=-0.122 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 399 PNAIVWGALLAGCRLHK---KTDLAEHVLNQLIALE-P-WNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 399 p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++..+.-.+..++.+.+ +.++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666666777777776 5668888888888877 6 4567788888888888888888888888876
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.84 E-value=0.0026 Score=48.81 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=25.1
Q ss_pred HHhcCChHHHHHHHHHHHccCCCCch-hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 411 CRLHKKTDLAEHVLNQLIALEPWNSG-NYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 411 ~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+...|++++|...++++++.+|+++. .+..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444444444444444444444444 444444444444444444444444443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.78 E-value=0.0062 Score=46.62 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=59.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCCh
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEP-NAI-VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 451 (604)
....+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345677888899998888877 3344 556 78888888999999999999999999999988776632 445
Q ss_pred HHHHHHHHHHh
Q 044872 452 NDAAKIRSMMG 462 (604)
Q Consensus 452 ~~A~~~~~~m~ 462 (604)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 218
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.68 E-value=0.0039 Score=48.14 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 299 VVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN-GNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 299 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
..|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.|+...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555555555442 222 2344444445555555555555555444
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.13 Score=56.42 Aligned_cols=154 Identities=16% Similarity=0.119 Sum_probs=95.6
Q ss_pred HHHHhCCChhHHHH-HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 044872 104 SGYINEGNLEEAIN-MFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNM 182 (604)
Q Consensus 104 ~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (604)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. . ..-...+..+|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCH
Confidence 33445677777766 4411 1 1122335666667777777777665431 1 1123456778999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 044872 183 EKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNE 262 (604)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (604)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999987764 457899999999999999999999988743 3334444445666666555554444433
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 044872 263 FLSNPVLGTTLIDMYAKCGRMAQACKVFRE 292 (604)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (604)
- ++....+|.++|++++|.+++.+
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 13334456667777777766544
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.46 E-value=0.12 Score=56.78 Aligned_cols=129 Identities=12% Similarity=0.185 Sum_probs=84.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChh
Q 044872 34 PFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLE 113 (604)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 113 (604)
..++..+...|..+.|.++.+ +. ..-.......|++++|.++.+.+. +...|..|...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 556666667777777665542 11 112345567899999999887764 5678999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHcc
Q 044872 114 EAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQ 191 (604)
Q Consensus 114 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 191 (604)
.|.++|.++.. |..+...+...++.+....+-+.....| -++.-..+|.++|++++|.+++.+
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988743 4444555555677776666655555543 123334456666777777666433
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.45 E-value=0.051 Score=52.39 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHhc-----cCcHHHHHHHHHHchhhcCCCCc-hHHHHHHHHHHh----hcCC-------HHHHHHH
Q 044872 329 IQPNGNTFVGLLCGCTH-----AGLVDEGRQFFNSMSRVFSLTPM-IEHYGCMVDLLG----RSGQ-------LDEAHEL 391 (604)
Q Consensus 329 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g~-------~~~A~~~ 391 (604)
.+.+...|...+.+... .....+|..+|++..+ +.|+ ...|..+.-+|. ..+. +..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34455666666655432 2346889999999884 4676 334443332221 1111 1223332
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 392 IKSMPM-EPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 392 ~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
...+.. ..+..+|.++...+...|+++.|...++++++++| +...|..++.++.-.|++++|.+.+++....+.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 233322 34677888887777788999999999999999997 467888999999999999999999999987543
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.44 E-value=0.011 Score=54.58 Aligned_cols=87 Identities=8% Similarity=0.068 Sum_probs=70.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHccCCCC-chhHHHHHHHHHhc-CChHH
Q 044872 385 LDEAHELIKSM-PMEPN---AIVWGALLAGCRL-----HKKTDLAEHVLNQLIALEPWN-SGNYVLLSNIYSAS-HKWND 453 (604)
Q Consensus 385 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 453 (604)
..+|...+++. .+.|+ ...|..|...|.. -|+.++|++.|+++++++|+. ..+++.+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555556555 55666 4578888888888 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHhhCCCccCCc
Q 044872 454 AAKIRSMMGDKGIQKIRG 471 (604)
Q Consensus 454 A~~~~~~m~~~~~~~~~~ 471 (604)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999999876664454
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.02 E-value=0.043 Score=42.50 Aligned_cols=71 Identities=11% Similarity=-0.018 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHH
Q 044872 371 HYGCMVDLLGRSGQLDEAHELIKSM-----P----MEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLL 441 (604)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 441 (604)
-+-.|...+.+.|+++.|...|+.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445556666667777776666654 1 113456888899999999999999999999999999987665554
No 224
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.88 E-value=0.033 Score=42.15 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=52.3
Q ss_pred CchHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 367 PMIEHYGCMVDLLGRSGQ---LDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
++...+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...|+++++.+|.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 456667777777754444 68888888887 4455 45577777788899999999999999999999873
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.23 Score=42.23 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=83.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHH
Q 044872 275 DMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQ 354 (604)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 354 (604)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788888888887776 4567888888888888888888888887643 3344445556677666555
Q ss_pred HHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 044872 355 FFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQL 427 (604)
Q Consensus 355 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 427 (604)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|.... ....+|-.+.|.++.+++
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 44433322 1 134444556668888888888888754332221 123467777777776654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.57 E-value=0.043 Score=45.45 Aligned_cols=73 Identities=18% Similarity=0.024 Sum_probs=46.7
Q ss_pred CchHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 367 PMIEHYGCMVDLLGRSG---QLDEAHELIKSM-PME-P--NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
++..+.-.+..++.+.+ +.+++..++++. ... | +...+-.|.-+|.+.|++++|.+.++++++.+|++..+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34444444444555554 344555555544 112 3 2335556777889999999999999999999998864433
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.37 E-value=3.2 Score=43.37 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHH
Q 044872 313 YVKVAFGVFGQLEKCG-IQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAH 389 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 389 (604)
+.+.|..+|....... ..+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 6677888887775432 222221 2222232333444244455555544322 222222223333334668888888
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHc
Q 044872 390 ELIKSMPMEP-N-AIVWGALLAGCRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 390 ~~~~~~~~~p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 429 (604)
..|+.|+..+ + ....-=+..+....|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 8888885332 2 22122233456677888888888887764
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.34 E-value=0.12 Score=41.09 Aligned_cols=44 Identities=11% Similarity=-0.007 Sum_probs=20.9
Q ss_pred HHHHHHHHHccC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 420 AEHVLNQLIALE-P-WNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 420 a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
++.+++.++..+ | ........|+-++.+.|++++|.+..+.+.+
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444444444433 2 2233444455555555555555555555543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.79 Score=38.86 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=80.7
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHH
Q 044872 73 NLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKW 152 (604)
Q Consensus 73 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 152 (604)
.....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455778888888887665 3567788888888888888888888887643 4444445556677776666
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 044872 153 IHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNM 223 (604)
Q Consensus 153 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 223 (604)
+-+.....| -++.-...+.-.|+++++.++|.+..+.. --+......|..+.|.++..++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 655555544 13344445566688888888876654411 1111112245555666665554
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.97 E-value=0.0029 Score=62.32 Aligned_cols=238 Identities=11% Similarity=0.086 Sum_probs=166.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 044872 64 DEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQ 143 (604)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 143 (604)
.+.+|..|..++.+.+++.+|..-|- ...|+..|..+|....+.|.+++-+..+...++..- ++..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 46788889999988888888887663 345778899999999999999998888876665433 33444567888999
Q ss_pred CCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC------------------------CCcch
Q 044872 144 LGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE------------------------KDIVS 199 (604)
Q Consensus 144 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------~~~~~ 199 (604)
.+++.+-++++. .||+.-...+.+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888776555442 46666667788888888999988888877652 36778
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 044872 200 WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAK 279 (604)
Q Consensus 200 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 279 (604)
|-.+-.+|...+.+.-|.-.--.+.- .||. ...++.-|...|.+++-..+++.-+.. -.....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHh
Confidence 99999999999888766544333332 2221 123444566777777777776665532 13467888889888987
Q ss_pred cCCHHHHHHHHHhcCC----C-------CcccHHHHHHHHHhCCCHHHHHH
Q 044872 280 CGRMAQACKVFREMKD----K-------DQVVWNAVVSGLSMNGYVKVAFG 319 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~~ 319 (604)
- ++++-.+-++.... | ....|.-++-.|.+..+++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 44444444443322 1 45678888888888888886643
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.36 E-value=0.074 Score=52.63 Aligned_cols=197 Identities=13% Similarity=0.168 Sum_probs=109.2
Q ss_pred hcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 044872 7 SNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALK 86 (604)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 86 (604)
..++..+|++-|-+. -|+..|..++.++.+.|.++.-...+....+. ..++.+-+.|+-+|++.+++.+-++
T Consensus 66 ~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEe 137 (624)
T 3lvg_A 66 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEE 137 (624)
T ss_dssp TSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTS
T ss_pred ccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHH
Confidence 344555555544221 25566777777777777777666666555443 3344555677777777766554332
Q ss_pred ----------------------------HhccCC------------------------CCCcccHHHHHHHHHhCCChhH
Q 044872 87 ----------------------------VFDDIP------------------------DKNVVSWTAIISGYINEGNLEE 114 (604)
Q Consensus 87 ----------------------------~f~~~~------------------------~~~~~~~~~li~~~~~~g~~~~ 114 (604)
+|..++ ..++.+|-.+-.+|...+.+.-
T Consensus 138 fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 138 FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTT
T ss_pred HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHH
Confidence 222221 0244555555555555555554
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCC
Q 044872 115 AINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPE 194 (604)
Q Consensus 115 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 194 (604)
|.-+--.++- .|| -+..++..|-..|.+++-..+++..+... ......++-|.-.|+|- +.++-.+.++..-.
T Consensus 218 AqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 218 AQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp TTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 4433322221 111 12233444555566666555555544211 34667888888888886 34444444433221
Q ss_pred ----C-------CcchHHHHHHHHHhCCCchHHHH
Q 044872 195 ----K-------DIVSWSSMIQGYASNGFPKEALD 218 (604)
Q Consensus 195 ----~-------~~~~~~~li~~~~~~g~~~~A~~ 218 (604)
| ....|.-++-.|.+-.+++.|..
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 2 44579999999999999887754
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.11 E-value=1.7 Score=35.11 Aligned_cols=66 Identities=8% Similarity=-0.067 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHccCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 398 EPNAIVWGALLAGCRLHK---KTDLAEHVLNQLIALEPW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 398 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.|+..+--.+..++.+.. +..+++.+++.++...|. .......|+-.+.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345444444444554444 345677777777776664 345566777788888888888888887776
No 233
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.95 E-value=0.22 Score=38.38 Aligned_cols=65 Identities=11% Similarity=-0.152 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHccC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 400 NAIVWGALLAGCRLHKKTDLAEHVLNQLIALE-------PWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 400 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
+..-+..|...+...++++.|...++++++.. +..+..+..|+.+|.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999998642 334567899999999999999999999999763
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.75 E-value=0.8 Score=36.35 Aligned_cols=74 Identities=19% Similarity=0.031 Sum_probs=47.3
Q ss_pred CchHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHH
Q 044872 367 PMIEHYGCMVDLLGRSGQLDE---AHELIKSM-PME-P-N-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYV 439 (604)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 439 (604)
|+..+--.+..++.+.....+ ++.+++.. ... | + ....-.|.-++.+.|+++.|.+.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444445555555555444 55666555 222 3 1 223445666789999999999999999999998865544
Q ss_pred H
Q 044872 440 L 440 (604)
Q Consensus 440 ~ 440 (604)
.
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.31 E-value=0.24 Score=40.39 Aligned_cols=54 Identities=7% Similarity=-0.058 Sum_probs=38.7
Q ss_pred hcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 413 LHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 413 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
..+|.++|.++|+.++++...-+..+...+..-.++|+.+.|++++.+....+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 336788888888888766444455666666767788888888888888877554
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.30 E-value=0.097 Score=48.36 Aligned_cols=63 Identities=10% Similarity=0.177 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCChHHHHHHHHHHHccCCC
Q 044872 371 HYGCMVDLLGRS-----GQLDEAHELIKSM-PMEPN--AIVWGALLAGCRL-HKKTDLAEHVLNQLIALEPW 433 (604)
Q Consensus 371 ~~~~li~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~p~ 433 (604)
.|..+...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.+.+.+.++++++..|.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444555555552 5666666666555 34442 3444445555444 36666666666666665554
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.80 E-value=1 Score=48.05 Aligned_cols=53 Identities=15% Similarity=-0.046 Sum_probs=49.8
Q ss_pred HHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHh
Q 044872 410 GCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 410 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 462 (604)
-|...|+++.|.++.+++...-|.+-.+|..|+.+|...|+|+.|.-.++.+.
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36778999999999999999999999999999999999999999999999885
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.30 E-value=0.92 Score=37.05 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=41.9
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 381 RSGQLDEAHELIKSM-PME-PNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
..++.++|.++|+.+ ... .=...|-....--.++|++..|.+++.+++++.|.+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 346777777777766 111 1156777777777889999999999999999988764443
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.63 E-value=1.8 Score=34.52 Aligned_cols=46 Identities=9% Similarity=0.004 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHccCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 418 DLAEHVLNQLIALEPW-NSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 418 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+++.+++.+++.+|. ....+..|+-++.+.|++++|.+..+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455555555554442 233445555555566666666655555544
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.52 E-value=7 Score=31.29 Aligned_cols=117 Identities=13% Similarity=0.050 Sum_probs=71.7
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----------------------HhcCChHHHHHHhccCCCCCccc
Q 044872 41 AREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLY----------------------VHCGYLADALKVFDDIPDKNVVS 98 (604)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~----------------------~~~g~~~~A~~~f~~~~~~~~~~ 98 (604)
...|..+++.++.....+.. +..-+|-.|--. ..||.+......+-.+. .+...
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-~~se~ 93 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNEH 93 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-chHHH
Confidence 34577788888877776653 333333333222 23444444444443332 23444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 99 WTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 99 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
.+.-+..+...|+-++-.+++..+.. +.+|++..+..+..||.+.|+..++.+++.++-+.|.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 55666777777777777777777543 3466777777777888888888888888777777764
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.27 E-value=4 Score=30.60 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 313 YVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 313 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
+.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+-. ...|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455677777888888899999999999999999999999999999998754433 456766654
No 242
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.03 E-value=23 Score=33.40 Aligned_cols=167 Identities=12% Similarity=0.041 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHHHHCCCCCCHHHHHHHHHHHHc
Q 044872 169 ATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMF----YNMQRENLKPEYYTMVGVLSACAS 244 (604)
Q Consensus 169 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 244 (604)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44566678899999999987533 233455667766655544 444456788888777777777765
Q ss_pred cCchH-HHHHHHHHH----HHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHH
Q 044872 245 LGALE-LGVWASSFM----ERNE--FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 245 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 317 (604)
...-+ .-..+...+ .+.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 54311 112223333 3333 344778888999999999999999998843222222455444433333322111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchh
Q 044872 318 FGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 318 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
+|...-..++ -|...+++..|...++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1222222333 34456778888776665543
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.92 E-value=2.1 Score=35.65 Aligned_cols=123 Identities=16% Similarity=0.110 Sum_probs=60.4
Q ss_pred CCCCCCHH--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch-------HHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 044872 327 CGIQPNGN--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI-------EHYGCMVDLLGRSGQLDEAHELIKSM-- 395 (604)
Q Consensus 327 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-- 395 (604)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45555443 34444556666777777777666544332223331 24445556777777777777776663
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 396 -----PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 396 -----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
+-.|+. ..++. ...... .-..+ +.+...-.-++.+|.+.|++++|..+++.+..
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCc--ccccc----ccCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111111 10000 000000 00001 22335666799999999999999999887643
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.70 E-value=25 Score=37.53 Aligned_cols=55 Identities=20% Similarity=0.054 Sum_probs=45.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 044872 138 LTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP 193 (604)
Q Consensus 138 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 193 (604)
...|...|+++.|..+-...+... +.+-.+|..|..+|.+.|+++.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667889999999988888764 4567789999999999999999999988887
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.36 E-value=24 Score=32.99 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCChhhHHHHHHHHh
Q 044872 67 VKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINM----FRRLLHRGLKPDSFSIVRVLTACT 142 (604)
Q Consensus 67 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 142 (604)
.+.++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .+...+.++++|..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3455677788899999999887432 2345667777666654 455556788889888888887776
Q ss_pred cCCChH-HHHHHHHHHH----HhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhC
Q 044872 143 QLGDLS-TAKWIHGYVN----EAGK--GRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASN 210 (604)
Q Consensus 143 ~~g~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 210 (604)
....-+ .-..+...++ +.|- .-++.....+...|.+.|++.+|+..|-.-...|...+..++.-+.+.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 543211 1233333333 3332 247788999999999999999999887633222455555555444443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.78 E-value=9.1 Score=28.54 Aligned_cols=87 Identities=16% Similarity=0.090 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 044872 247 ALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLEK 326 (604)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 326 (604)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-++-. .+.|..+++...+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667777777666553 22222223445667899999999999999999999987765 467888888888888877
Q ss_pred CCCCCCHHHHHH
Q 044872 327 CGIQPNGNTFVG 338 (604)
Q Consensus 327 ~g~~p~~~t~~~ 338 (604)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 455555543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.70 E-value=2.3 Score=41.76 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCccCCc
Q 044872 404 WGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD-----KGIQKIRG 471 (604)
Q Consensus 404 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 471 (604)
...++.++...|+.+.+...++.++..+|-+...+..+..+|.++|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345566777889999999999999999999888999999999999999999999888764 37765543
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.67 E-value=9.8 Score=28.42 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=59.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHHHHHHHHH
Q 044872 246 GALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 325 (604)
...++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||...|-++-.. +.|..+++...+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345667777776666553 222222233456678999999999999999999999887653 5677778877777777
Q ss_pred HCCCCCCHHHHHH
Q 044872 326 KCGIQPNGNTFVG 338 (604)
Q Consensus 326 ~~g~~p~~~t~~~ 338 (604)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 665 455555543
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.97 E-value=29 Score=32.75 Aligned_cols=133 Identities=13% Similarity=0.106 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHHHHCCCCCChhhHHHHHHHHhc
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMF----RRLLHRGLKPDSFSIVRVLTACTQ 143 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 143 (604)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +.+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34456678899999999998643 134456677776665554 555667889999888888888776
Q ss_pred CCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCC
Q 044872 144 LGDLS-TAKWIHGYVN----EAG--KGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNG 211 (604)
Q Consensus 144 ~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 211 (604)
...-+ .-..+...++ +.| ..-|+.....+...|.+.+++.+|+..|-.-.++.+..+..|+.-+.+.+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 65422 1223333333 333 33477888889999999999999998884322222355655554444433
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.34 E-value=5.4 Score=33.20 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=14.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC
Q 044872 375 MVDLLGRSGQLDEAHELIKSMPM 397 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~ 397 (604)
+...|.+.|++++|+.+++.+|.
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHCCHHHHHHHHhcCCc
Confidence 44556666666666666666643
No 251
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.45 E-value=19 Score=37.81 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=19.2
Q ss_pred chhHHHHHHH-----HHhcCChHHHHHHHHHHh
Q 044872 435 SGNYVLLSNI-----YSASHKWNDAAKIRSMMG 462 (604)
Q Consensus 435 ~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~ 462 (604)
..++..|.++ +...|+|++|.+.++++.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 3455544433 378999999998888753
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.40 E-value=7.5 Score=29.18 Aligned_cols=61 Identities=23% Similarity=0.281 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 044872 113 EEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVD 174 (604)
Q Consensus 113 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 174 (604)
-+..+-++.+...++.|++......|++|.+.+|+..|.++++-+...- .....+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3555666666777788888888888888888888888888888775542 222445655543
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.27 E-value=13 Score=27.65 Aligned_cols=87 Identities=11% Similarity=0.117 Sum_probs=61.4
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
..-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||+..|-+|-. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345677777776666553 33333333455778899999999999999999999988765 47788888887777777
Q ss_pred HCCCCCCHHHHH
Q 044872 225 RENLKPEYYTMV 236 (604)
Q Consensus 225 ~~g~~p~~~t~~ 236 (604)
.+| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 765 45444443
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=81.64 E-value=14 Score=27.55 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 224 (604)
..-++|.-|-+.+...+. ...+--.-+..+...|++++|..+.+.+.-||+..|-+|-.. +.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345677777776666553 333333334557788999999999999999999999888654 6677777777777776
Q ss_pred HCCCCCCHHHHH
Q 044872 225 RENLKPEYYTMV 236 (604)
Q Consensus 225 ~~g~~p~~~t~~ 236 (604)
.+| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 665 45444443
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.02 E-value=6.7 Score=31.18 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHH
Q 044872 314 VKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVD 377 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 377 (604)
.-+..+-++.+....+-|+.....+.|.+|.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 445667777777788999999999999999999999999999999987543 44556766654
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.70 E-value=37 Score=33.76 Aligned_cols=185 Identities=11% Similarity=0.099 Sum_probs=118.2
Q ss_pred CCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc-CCCCch--hHHHHHHHHHHhcCC
Q 044872 211 GFPKEALDMFYNMQRE-----NLKPEYYTMVGVLSACASLGALELGVWASSFMERN-EFLSNP--VLGTTLIDMYAKCGR 282 (604)
Q Consensus 211 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~li~~~~~~g~ 282 (604)
|++++|++.+..+.+. +..........++..|...++++...+....+.+. |..+.. ...+.+++.......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6789999888766542 23445667888999999999999988877766553 322221 112223333333333
Q ss_pred H--HHHHHHHHhcCCC-Cc---------ccHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhc
Q 044872 283 M--AQACKVFREMKDK-DQ---------VVWNAVVSGLSMNGYVKVAFGVFGQLEKC--GIQPNG---NTFVGLLCGCTH 345 (604)
Q Consensus 283 ~--~~A~~~~~~~~~~-~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~ 345 (604)
. +.-..+.+..... +- .....|...|...|++.+|.+++.++... |..+.. ..+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 2 2333444443321 11 12345677888999999999999998652 333222 356666788999
Q ss_pred cCcHHHHHHHHHHchhh-cCC--CCc--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 346 AGLVDEGRQFFNSMSRV-FSL--TPM--IEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 346 ~g~~~~a~~~~~~~~~~-~~~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
.+++.+|..+...+... +.. .|+ ...+.+++..+...+++.+|.+.|.++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999887431 112 222 245677788888899999988877665
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.15 E-value=42 Score=31.38 Aligned_cols=168 Identities=8% Similarity=0.007 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHccCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 044872 168 VATSLVDLYAKCGNMEKARRVFDQMPEKDIVSWSSMIQGYASNGFPKEALDM----FYNMQRENLKPEYYTMVGVLSACA 243 (604)
Q Consensus 168 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 243 (604)
.+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.++++|......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344566678888888888887533 23345566776665554 344445677888777777777665
Q ss_pred ccC-----chHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhC---CC
Q 044872 244 SLG-----ALELGVWASSFMERNE--FLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMN---GY 313 (604)
Q Consensus 244 ~~~-----~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 313 (604)
... ...-.........+.| ..-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 532 1122223333333333 2347888899999999999999999887633222344444443333222 33
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchh
Q 044872 314 VKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSR 361 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 361 (604)
..++ |...-..++ -|...+++..|..+|+...+
T Consensus 184 ~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred cchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 2221 111112222 24456788888888876654
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=78.53 E-value=83 Score=34.46 Aligned_cols=248 Identities=12% Similarity=0.022 Sum_probs=129.3
Q ss_pred HHHhcCCHHHHHHHHccCCCC----Cc--chHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCC---HH--HHHHHHHH
Q 044872 175 LYAKCGNMEKARRVFDQMPEK----DI--VSWSSMIQGYASNGFPKEALDMFYNMQRENL--KPE---YY--TMVGVLSA 241 (604)
Q Consensus 175 ~y~~~g~~~~A~~~~~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~--t~~~ll~~ 241 (604)
+....|+.++++.+++.-... +. ..-..+.-+....|..+++++++.......- .-+ .. .-..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345668888888888876541 21 1223344566677777788888877665311 001 11 11122222
Q ss_pred HHccCc-hHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C--cccHHHHHHHHHhCCCHH
Q 044872 242 CASLGA-LELGVWASSFMERNEFLSNP--VLGTTLIDMYAKCGRMAQACKVFREMKDK-D--QVVWNAVVSGLSMNGYVK 315 (604)
Q Consensus 242 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~ 315 (604)
.+..|. -+++...+..++...- +.. ...-+|.-.|...|+-+....++..+.+. + +.-.-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 232332 2344444444443221 111 12223444456678877777777765432 2 222233334555789999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHH---HHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHH
Q 044872 316 VAFGVFGQLEKCGIQPNG-NTFV---GLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHEL 391 (604)
Q Consensus 316 ~A~~~~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (604)
.+..+.+.+... +|. .-|. .+.-+|+..|+.....+++..+.+. ...++.....+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888888763 233 2233 3445788889988888888888753 223333333333344456766666667
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 044872 392 IKSMP--MEPNAIVWGALLAGCRLHKKT-DLAEHVLNQLI 428 (604)
Q Consensus 392 ~~~~~--~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~ 428 (604)
++.+. ..|.+..-..+.-+....|+. ..+...+..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66552 223333222233333333332 45666666654
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=78.53 E-value=25 Score=28.41 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchh
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGN 437 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 437 (604)
..--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 33446668999999999999999999999988544
No 260
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.14 E-value=11 Score=36.91 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=38.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHchh----hcCCCCchHH
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMSR----VFSLTPMIEH 371 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 371 (604)
++..+...|++.+|+..+..+.. ..| +...+..++.++...|+..+|.+.|+...+ ..|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44455566666666666666655 233 555666666666666666666666665432 3466665543
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.69 E-value=30 Score=29.84 Aligned_cols=101 Identities=11% Similarity=0.177 Sum_probs=69.4
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHc--cCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 044872 387 EAHELIKSM-PMEPNAI---VWGALLAGCRLHKKTDLAEHVLNQLIA--LEPWNSGNYVLLSNIYSASHKWNDAAKIRSM 460 (604)
Q Consensus 387 ~A~~~~~~~-~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 460 (604)
.+...|... ..+-|.. .|-..+..| ..++...+..+|..|.. ++-.-+..|...+..+...|++.+|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444 2344554 454444443 24457788999998874 5566778899999999999999999999999
Q ss_pred HhhCCCccCCceeEEEECCEEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCC
Q 044872 461 MGDKGIQKIRGCSWVEVDGVVHEFLVGDNSHPLSEKIYSKLDELATKLKAAGF 513 (604)
Q Consensus 461 m~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 513 (604)
-++++-+|. ........+...+|.+.++
T Consensus 141 GI~~~A~P~-------------------------~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 141 GAENNCRPY-------------------------NRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp HHHTTCBSH-------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHcCCccH-------------------------HHHHHHHHHHHHHHHhcCC
Confidence 888765432 2333445677778888887
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=74.67 E-value=30 Score=27.49 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhH
Q 044872 403 VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNY 438 (604)
Q Consensus 403 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 438 (604)
.+--|.-|+.+.|+++.|.+..+.+++.+|+|..+.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 455566678899999999999999999999885443
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.52 E-value=40 Score=30.39 Aligned_cols=16 Identities=0% Similarity=0.104 Sum_probs=9.2
Q ss_pred HHHhcCCHHHHHHHHH
Q 044872 276 MYAKCGRMAQACKVFR 291 (604)
Q Consensus 276 ~~~~~g~~~~A~~~~~ 291 (604)
..++.|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3345566666666665
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.73 E-value=14 Score=29.41 Aligned_cols=57 Identities=12% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHH
Q 044872 48 LGVRSHSLIVKAGLDCDEFVKTSLLNLYVHCGYLADALKVFDDIPD---KNVVSWTAIIS 104 (604)
Q Consensus 48 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 104 (604)
+.++-++.+....+-|++.+..+-+.++-+.+++.-|.++|+.+.. +....|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 4444445554555555666666666666666666666666654432 22334555544
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.22 E-value=44 Score=30.30 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=31.8
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 308 LSMNGYVKVAFGVFGQLEKCGIQP-NGNTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 308 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
..+.|..++|++....-++. .| |...-..++..++-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44566777777766666663 34 44444555666677777777777666655
No 266
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=71.79 E-value=65 Score=30.04 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=43.3
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 392 IKSMPMEPNAI--VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 392 ~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
|...++.|... +..+-++.+.+++|+..|..+.++++++.|... ..+.|.++.....+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 33336666433 677778889999999999999999999998532 235677777766554
No 267
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=71.63 E-value=1.2e+02 Score=33.15 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH
Q 044872 134 IVRVLTACTQLGDLSTAKWIHGYVNE 159 (604)
Q Consensus 134 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 159 (604)
|..+++.....++.+.+.++|..+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66667777778888888888887764
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.50 E-value=69 Score=36.37 Aligned_cols=140 Identities=12% Similarity=0.055 Sum_probs=71.9
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCC----C----------------
Q 044872 238 VLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDK----D---------------- 297 (604)
Q Consensus 238 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~---------------- 297 (604)
++..+...+..+.+.++.... +.++...-.+..+|..+|++++|...|.+.... +
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 333444445444444433221 223333344566777888888888888775421 0
Q ss_pred ------cccHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCC
Q 044872 298 ------QVVWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNG--N--TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTP 367 (604)
Q Consensus 298 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 367 (604)
..-|..++..+.++|.++.++++-+..++..-+-+. . .|..+..++...|++++|...+-.+... ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~-- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL-- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--
Confidence 011444556666666666666666655543211111 1 3555666666777777776666555421 11
Q ss_pred chHHHHHHHHHHhhcCCH
Q 044872 368 MIEHYGCMVDLLGRSGQL 385 (604)
Q Consensus 368 ~~~~~~~li~~~~~~g~~ 385 (604)
-......||..++..|..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 233445555545544443
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.73 E-value=80 Score=30.63 Aligned_cols=57 Identities=9% Similarity=-0.086 Sum_probs=27.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCcHHHHHHHHHHch
Q 044872 304 VVSGLSMNGYVKVAFGVFGQLEKCGIQPNG-----NTFVGLLCGCTHAGLVDEGRQFFNSMS 360 (604)
Q Consensus 304 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~ 360 (604)
++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 455555666666666666555542111111 123333344555555555555555443
No 270
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.13 E-value=58 Score=36.95 Aligned_cols=63 Identities=10% Similarity=-0.172 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHccCC-CCc----hhHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 044872 404 WGALLAGCRLHKKTDLAEHVLNQLIALEP-WNS----GNYVLLSNIYSASHKWNDAAKIRSMMGDKGI 466 (604)
Q Consensus 404 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 466 (604)
|.-++..+.+++.++.+.+..+.+++..+ ++. ..|..+...+...|++++|...+-.+.+...
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 44555666677777777777776665432 222 1455566666777777777777766655433
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.75 E-value=9.9 Score=34.51 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=36.9
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC
Q 044872 378 LLGRSGQLDEAHELIKSM-PMEP-NAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN 434 (604)
Q Consensus 378 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 434 (604)
.+.+.|.+++|++....- ...| |...-..|+.-++..|++++|.+-++...+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 355677777777665544 3334 44455566667777777777777777777777754
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.96 E-value=68 Score=28.75 Aligned_cols=20 Identities=10% Similarity=-0.127 Sum_probs=10.4
Q ss_pred HHHHHHhcCChHHHHHHhcc
Q 044872 71 LLNLYVHCGYLADALKVFDD 90 (604)
Q Consensus 71 li~~~~~~g~~~~A~~~f~~ 90 (604)
.+...+..|+.+-+..+++.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444455666555555544
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.11 E-value=1.4e+02 Score=31.00 Aligned_cols=421 Identities=9% Similarity=-0.041 Sum_probs=208.1
Q ss_pred hhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHH
Q 044872 6 VSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAG-LDCDEFVKTSLLNLYVHCGYLADA 84 (604)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A 84 (604)
.+.|++..+..+...+....+. .-..|..+..... ..... ++-..+.+.. .+.....-+.-+..+.+.+++...
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 3556666666665544322111 1123333332221 11233 4444444432 111223445556777788999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH--HHHHHHHHHHhC-
Q 044872 85 LKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLST--AKWIHGYVNEAG- 161 (604)
Q Consensus 85 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~--a~~~~~~~~~~g- 161 (604)
...+.. +..+...-.....+....|+..+|......+-..|- ........++..+.+.|.+.. ..+=+..+...|
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~ 169 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGN 169 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Confidence 987776 433554455566778888998888888887766553 344566777777766554433 111122222222
Q ss_pred ----------CCCCh-hHHHHHHHHHHhcCCHHHHHHHHccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 044872 162 ----------KGRNV-FVATSLVDLYAKCGNMEKARRVFDQMPEKDIV---SWSSMIQGYASNGFPKEALDMFYNMQREN 227 (604)
Q Consensus 162 ----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g 227 (604)
++++. .....++..+.+- ..+....... .++.. ....-+.-+.+ .+.+.|...|.......
T Consensus 170 ~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~ 244 (618)
T 1qsa_A 170 TGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ 244 (618)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc
Confidence 11111 1112222222221 1112222111 11111 11112233333 37789999998886543
Q ss_pred CCCCHHHHHHHH----HHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCc--cc-
Q 044872 228 LKPEYYTMVGVL----SACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQ--VV- 300 (604)
Q Consensus 228 ~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~- 300 (604)
..+......+- ......+....+...+....... .+.....-.+..-.+.|+++.|...|+.|..... .-
T Consensus 245 -~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~ 321 (618)
T 1qsa_A 245 -QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEW 321 (618)
T ss_dssp -TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhH
Confidence 22332222222 22333442445555555544433 2333333444555678999999999999986421 11
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCc-h---H--HHHH
Q 044872 301 WNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPM-I---E--HYGC 374 (604)
Q Consensus 301 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~--~~~~ 374 (604)
.-=+..++...|+.++|..+|.++.. +. +|-.++.+ .+.|..-. .. ...+.+. . . ....
T Consensus 322 ~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~~-~~~~~~~~~~~~~~~~~~~ 386 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------LK-IDKAPQNVDSALTQGPEMA 386 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------CC-CCCCCSCCCCHHHHSHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------CC-CCCCChhHHhhhccChHHH
Confidence 12244567788999999999999864 22 34444422 22221000 00 0001110 0 0 1112
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCC---CCchhHHHHHHHHHhcCCh
Q 044872 375 MVDLLGRSGQLDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEP---WNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~ 451 (604)
-+..+...|...+|...+.......+......+.......|..+.+.....+....+. .-+..|..++.-+++.-.+
T Consensus 387 r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv 466 (618)
T 1qsa_A 387 RVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEI 466 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSS
T ss_pred HHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCC
Confidence 3456778899999988777662223444344454555678888887766654332210 0123455555555555555
Q ss_pred HHHHH
Q 044872 452 NDAAK 456 (604)
Q Consensus 452 ~~A~~ 456 (604)
+.+.-
T Consensus 467 ~~~ll 471 (618)
T 1qsa_A 467 PQSYA 471 (618)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 55443
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.95 E-value=59 Score=26.57 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=51.2
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHc--cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 044872 387 EAHELIKSM-PMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIA--LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGD 463 (604)
Q Consensus 387 ~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 463 (604)
.+...|... ..+-|..-...-+.--... +.+..+|..+.. ++-.-+..|...+..+...|++.+|.++++.-++
T Consensus 53 rc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 53 HLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555444 3344554333222222122 337788888875 4455677888999999999999999999998888
Q ss_pred CCCcc
Q 044872 464 KGIQK 468 (604)
Q Consensus 464 ~~~~~ 468 (604)
++-+|
T Consensus 130 ~~A~P 134 (152)
T 4a1g_A 130 NQAEP 134 (152)
T ss_dssp TTCBS
T ss_pred cCCcc
Confidence 76543
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.94 E-value=64 Score=28.14 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=27.9
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHhcc
Q 044872 38 KACAREHDFQLGVRSHSLIVKAGLDCDEF--VKTSLLNLYVHCGYLADALKVFDD 90 (604)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~ 90 (604)
...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 33445677766666666655555443322 122234444556666666655554
No 276
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.43 E-value=1.4e+02 Score=29.59 Aligned_cols=144 Identities=9% Similarity=0.063 Sum_probs=84.8
Q ss_pred CCHHHHHHHHccCCC-----CCc----chHHHHHHHHHhCCCchHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----Hcc
Q 044872 180 GNMEKARRVFDQMPE-----KDI----VSWSSMIQGYASNGFPKEALDMFYNMQR-ENLKPEYYTMVGVLSAC----ASL 245 (604)
Q Consensus 180 g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~----~~~ 245 (604)
|+++.|.+.+-.+.+ .|. .....++..+...|+++...+.+.-+.. .|..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 677888776644432 222 2466678888899999888777766554 3333322 23333332 223
Q ss_pred CchHHHHH--HHHHHHH--cC-CCC---chhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CC-----cccHHHHHHHH
Q 044872 246 GALELGVW--ASSFMER--NE-FLS---NPVLGTTLIDMYAKCGRMAQACKVFREMKD----KD-----QVVWNAVVSGL 308 (604)
Q Consensus 246 ~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~ 308 (604)
...+.-.. +...+.. .| +-. ...+...|...|...|++.+|.+++..+.. .+ +..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33222111 1111100 11 111 223446688889999999999999888752 11 24566667788
Q ss_pred HhCCCHHHHHHHHHHHH
Q 044872 309 SMNGYVKVAFGVFGQLE 325 (604)
Q Consensus 309 ~~~g~~~~A~~~~~~m~ 325 (604)
...+++..|..++.+..
T Consensus 188 l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 88899999998888864
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.06 E-value=76 Score=26.28 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=40.0
Q ss_pred HHHHHHHHHc--cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCcc
Q 044872 420 AEHVLNQLIA--LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQK 468 (604)
Q Consensus 420 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 468 (604)
+..+|..|.. ++-.-+..|...+..+...|++.+|.++++.-++++-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 6677887764 556667789999999999999999999999988876543
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.37 E-value=64 Score=31.81 Aligned_cols=96 Identities=9% Similarity=-0.063 Sum_probs=53.4
Q ss_pred cHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHH----
Q 044872 300 VWNAVVSGLSMNGYVKVAFGVFGQLEKCGIQPN--GNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYG---- 373 (604)
Q Consensus 300 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~---- 373 (604)
++..+..-|.+.|+.++|.+.|.+++..-..+. ...+..+++.+...+++..+..+...+.....-.++...-+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566666666666666666666665322222 23555666677777777777777776653322222222111
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 044872 374 CMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~~ 395 (604)
+-.-.+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1122234567788887777654
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.60 E-value=90 Score=26.64 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 044872 64 DEFVKTSLLNLYVHCGYLADALKVFDDIPDKNVVSWTAIISGYINEGN 111 (604)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 111 (604)
+..+-...+..+.+.|..+....+.+.+.++|...-...+.++.+.+.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333334444444443333333333333444333334444444443
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.44 E-value=72 Score=29.08 Aligned_cols=17 Identities=0% Similarity=-0.353 Sum_probs=7.6
Q ss_pred HHHHhcCChHHHHHHhc
Q 044872 73 NLYVHCGYLADALKVFD 89 (604)
Q Consensus 73 ~~~~~~g~~~~A~~~f~ 89 (604)
...+..|..+-+..+++
T Consensus 67 ~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 67 HQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHTTSSSCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33344455444444444
No 281
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.49 E-value=1.4e+02 Score=28.96 Aligned_cols=17 Identities=12% Similarity=0.129 Sum_probs=9.5
Q ss_pred HHhcCCHHHHHHHHHhc
Q 044872 277 YAKCGRMAQACKVFREM 293 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~~ 293 (604)
.+..|+.+-...+++.-
T Consensus 252 A~~~g~~~~v~~Ll~~~ 268 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQ 268 (437)
T ss_dssp HHHTTCHHHHHHHHTTT
T ss_pred HHHCCCHHHHHHHHhcC
Confidence 34556666666555543
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.14 E-value=27 Score=34.56 Aligned_cols=60 Identities=12% Similarity=-0.033 Sum_probs=27.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHchhhc-CCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 336 FVGLLCGCTHAGLVDEGRQFFNSMSRVF-SLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 336 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
...+..-+.+.|+++.|.+.+..+.... +..--...+-..+.++...+++..+...++++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344445555555555555555554321 11111334444445555555555555554443
No 283
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=54.11 E-value=91 Score=27.08 Aligned_cols=84 Identities=12% Similarity=-0.007 Sum_probs=49.0
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCccc--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCC
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFT--FPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEF--VKTSLLNLYVHCGY 80 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~ 80 (604)
.++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++.. .....+...+..|.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 91 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHRS 91 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 4567888777777776666665544321 123444555667764 445556677655432 12234455567788
Q ss_pred hHHHHHHhccCC
Q 044872 81 LADALKVFDDIP 92 (604)
Q Consensus 81 ~~~A~~~f~~~~ 92 (604)
.+-+..+++...
T Consensus 92 ~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 92 PTCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHcCC
Confidence 887777776654
No 284
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.02 E-value=1.1e+02 Score=26.13 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCC
Q 044872 266 NPVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAVVSGLSMNG 312 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 312 (604)
+..+-...+.++.+.|+.+....+...+.+++...-...+.++...+
T Consensus 125 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44444444444444444333333333333333333333333343333
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=51.59 E-value=2.3e+02 Score=29.60 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=18.2
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC
Q 044872 379 LGRSGQLDEAHELIKSMPMEPN 400 (604)
Q Consensus 379 ~~~~g~~~~A~~~~~~~~~~p~ 400 (604)
+...|++++|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 3678999999999999976664
No 286
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.51 E-value=1.1e+02 Score=25.80 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHHhcCC
Q 044872 165 NVFVATSLVDLYAKCGN 181 (604)
Q Consensus 165 ~~~~~~~li~~y~~~g~ 181 (604)
+..+-...+.+..+.+.
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444433
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.37 E-value=20 Score=32.14 Aligned_cols=52 Identities=10% Similarity=-0.162 Sum_probs=28.4
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCccc-------HHHHHHHHH--ccCChHHHHHHHHHH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFT-------FPFVLKACA--REHDFQLGVRSHSLI 56 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 56 (604)
.++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+.++.+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3566777777677776666665554322 223333321 456666666665543
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=50.00 E-value=67 Score=27.86 Aligned_cols=21 Identities=5% Similarity=-0.160 Sum_probs=11.0
Q ss_pred HHHHHccCchHHHHHHHHHHH
Q 044872 239 LSACASLGALELGVWASSFME 259 (604)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~ 259 (604)
+......|+.+-+..+.+.-.
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHhhh
Confidence 444455666666655555433
No 289
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.41 E-value=86 Score=26.30 Aligned_cols=56 Identities=7% Similarity=0.156 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHccC-CC---CCcchHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC
Q 044872 176 YAKCGNMEKARRVFDQM-PE---KDIVSWSSMIQGYASNGFPKEALDMFYNMQRENLKPE 231 (604)
Q Consensus 176 y~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 231 (604)
.++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..|+
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 34556666665555543 11 2333333333333222222223445555555555544
No 290
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=49.28 E-value=1.9e+02 Score=27.95 Aligned_cols=28 Identities=4% Similarity=-0.155 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHchhh
Q 044872 333 GNTFVGLLCGCTHAGLVDEGRQFFNSMSRV 362 (604)
Q Consensus 333 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 362 (604)
.+++..+...+.- ..++++.....|+..
T Consensus 316 rIsl~~iA~~l~l--s~~evE~~L~~lI~d 343 (394)
T 3txn_A 316 RVQVAHVAESIQL--PMPQVEKKLSQMILD 343 (394)
T ss_dssp EEEHHHHHHHHTC--CHHHHHHHHHHHHHT
T ss_pred eeeHHHHHHHHCc--CHHHHHHHHHHHHHC
Confidence 3455555555433 567777777777654
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.00 E-value=1.9e+02 Score=27.96 Aligned_cols=320 Identities=12% Similarity=0.090 Sum_probs=157.0
Q ss_pred HHHHHHHhCCCCCCccc--HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHhccC
Q 044872 16 EFYNSMRNEGFLPTNFT--FPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEF--VKTSLLNLYVHCGYLADALKVFDDI 91 (604)
Q Consensus 16 ~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~ 91 (604)
++++.+.+.|..|+... ..+.+...+..|+.+.++.+ ++.|..++.. ...+.+...+..|..+-+.-+++.-
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCC
Confidence 34555556666554321 23455556677887655444 4556544321 2233455566788888888888764
Q ss_pred CCC---CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC
Q 044872 92 PDK---NVVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPD---SFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRN 165 (604)
Q Consensus 92 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 165 (604)
..+ +..-++.|. ..++.|+.+-...++ +.+..++ .... +.+...+..|+.+.++ .+++.|..++
T Consensus 104 a~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~----~Ll~~g~~~~ 173 (437)
T 1n11_A 104 ANPNLATTAGHTPLH-IAAREGHVETVLALL----EKEASQACMTKKGF-TPLHVAAKYGKVRVAE----LLLERDAHPN 173 (437)
T ss_dssp CCTTCCCTTCCCHHH-HHHHHTCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHHHTTCHHHHH----HHHHTTCCTT
T ss_pred CCCCCCCCCCCcHHH-HHHHcCCHHHHHHHH----hCCCCCcCCCCCCC-CHHHHHHHcCCHHHHH----HHHhCCCCCC
Confidence 433 233334443 345567665444443 4443322 1222 2344455667766444 4445565443
Q ss_pred hh--HHHHHHHHHHhcCCHHHHHHHHccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHH
Q 044872 166 VF--VATSLVDLYAKCGNMEKARRVFDQMPEKDI---VSWSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYT--MVGV 238 (604)
Q Consensus 166 ~~--~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l 238 (604)
.. ...+.+...+..|+.+-..-+++.-..++. ..++.| ...+..|+.+- ++.+.+.|..++... -.+.
T Consensus 174 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~ 248 (437)
T 1n11_A 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPL-HIAAKQNQVEV----ARSLLQYGGSANAESVQGVTP 248 (437)
T ss_dssp CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCH
Confidence 22 112344555778888888777776544322 223333 33455666543 334444454433211 1122
Q ss_pred HHHHHccCchHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCCHHHHHHHHHhcCC---CCcccHHHHHHHHHhCCC
Q 044872 239 LSACASLGALELGVWASSFMERNEFLSNPV--LGTTLIDMYAKCGRMAQACKVFREMKD---KDQVVWNAVVSGLSMNGY 313 (604)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 313 (604)
+...+..|..+.... +.+.+..++.. ...+.+...++.|+.+-+..+++.-.. .|..-++.|.. .+..|+
T Consensus 249 L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~ 323 (437)
T 1n11_A 249 LHLAAQEGHAEMVAL----LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV-ASHYGN 323 (437)
T ss_dssp HHHHHHTTCHHHHHH----HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHH-HHHSSC
T ss_pred HHHHHHCCCHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHH-HHHcCc
Confidence 333445666654443 44444333211 111223344567888877777775433 23334444443 345666
Q ss_pred HHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch
Q 044872 314 VKVAFGVFGQLEKCGIQPNGN---TFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI 369 (604)
Q Consensus 314 ~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 369 (604)
.+ +.+.+.+.|..++.. -.+.+- .....|..+-...+++ .|..|+.
T Consensus 324 ~~----~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~iv~~Ll~-----~ga~~~~ 372 (437)
T 1n11_A 324 IK----LVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTDIVTLLLK-----NGASPNE 372 (437)
T ss_dssp SH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHH-----TTCCSCC
T ss_pred HH----HHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHHHHHHHHH-----CcCCCCC
Confidence 54 444555666665432 122232 2334566654444433 2656554
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.10 E-value=56 Score=25.79 Aligned_cols=62 Identities=15% Similarity=0.286 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC---cccHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCC
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKN---VVSWTAIISGYINEGN--LEEAINMFRRLLHRGLKP 129 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 129 (604)
.+.++.-|...|+.++|.+.++++..|. ..+..++..++-+.+. .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3556777778888888888888876542 2233444445544432 345667777777666543
No 293
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=47.39 E-value=81 Score=27.40 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=12.7
Q ss_pred HHHHHccCchHHHHHHHHHHHH
Q 044872 239 LSACASLGALELGVWASSFMER 260 (604)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~ 260 (604)
+......++.+.+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344556666666666666554
No 294
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.26 E-value=1.1e+02 Score=28.51 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=43.4
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 044872 392 IKSMPMEPNAI--VWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKG 465 (604)
Q Consensus 392 ~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 465 (604)
|...++.|... +..+-++.+.+++|+..|....++++++.|... ..+.|.++.....+.+
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 34446666433 677778889999999999999999999988522 2355777777766543
No 295
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.01 E-value=91 Score=28.36 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=7.8
Q ss_pred HHHHHHHCCCCCCHH
Q 044872 219 MFYNMQRENLKPEYY 233 (604)
Q Consensus 219 ~~~~m~~~g~~p~~~ 233 (604)
+.+.+.+.|..|+..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 344445556666543
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.28 E-value=87 Score=24.67 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCC
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKDKD---QVVWNAVVSGLSMNGY--VKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 332 (604)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567778888889999999888887552 2233444445554432 3456777777777665443
No 297
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.18 E-value=1.4e+02 Score=25.13 Aligned_cols=17 Identities=6% Similarity=-0.040 Sum_probs=7.3
Q ss_pred chhHHHHHHHHHHhcCC
Q 044872 266 NPVLGTTLIDMYAKCGR 282 (604)
Q Consensus 266 ~~~~~~~li~~~~~~g~ 282 (604)
+..+-...+.++.+.|+
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444444444444
No 298
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.78 E-value=1.4e+02 Score=24.30 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHHHHhccCCCCC-----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 044872 82 ADALKVFDDIPDKN-----VVSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDS 131 (604)
Q Consensus 82 ~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 131 (604)
+++..+|..|.... ..-|..-...+-..|++.+|.++|+.-++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34777777766543 344777777888899999999999999888777743
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.28 E-value=1.7e+02 Score=25.11 Aligned_cols=57 Identities=5% Similarity=0.025 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCcccHHHH
Q 044872 248 LELGVWASSFMERNEFLSN-PVLGTTLIDMYAKCGRMAQACKVFREMKDKDQVVWNAV 304 (604)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 304 (604)
......+|..|...|+... ...|......+...|++.+|.++|+.-.+........|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL 152 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRL 152 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 4455556666655554433 34455555556666666666666665544444333333
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.09 E-value=87 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=20.1
Q ss_pred CCchHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 044872 366 TPMIEHYGCMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 366 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 395 (604)
.++.......+..+.|.|+-++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 334455556667788888888888877443
No 301
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.39 E-value=1.2e+02 Score=28.88 Aligned_cols=184 Identities=14% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 100 TAIISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKC 179 (604)
Q Consensus 100 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 179 (604)
..+|.-|...++.++|...++++......|.......-...=.+...-+.+-.++..+. .++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred CCHH-------------HHHHHHccCCCCCcch-----------------------------------------------
Q 044872 180 GNME-------------KARRVFDQMPEKDIVS----------------------------------------------- 199 (604)
Q Consensus 180 g~~~-------------~A~~~~~~~~~~~~~~----------------------------------------------- 199 (604)
.++. -|+.+.+.+..+.-..
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~veel 216 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHL 216 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHHH
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHHH
Q ss_pred ---HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 044872 200 ---WSSMIQGYASNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACAS-LGALELGVWASSFMERNEFLSNPVLGTTLID 275 (604)
Q Consensus 200 ---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 275 (604)
.+.++.-|...|+.+||.+.++++......+..+.....+..-.. ....+...+++..+.+.|+-+.......+..
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_pred HHHhcCCHH
Q 044872 276 MYAKCGRMA 284 (604)
Q Consensus 276 ~~~~~g~~~ 284 (604)
.+....++.
T Consensus 297 vl~~ldDl~ 305 (358)
T 3eiq_C 297 IYNEIPDIN 305 (358)
T ss_dssp HHHHHHHHH
T ss_pred HHHhccHhh
No 302
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=40.35 E-value=10 Score=22.81 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=8.7
Q ss_pred cccccCChhH
Q 044872 560 NLRVCGDCHE 569 (604)
Q Consensus 560 ~l~~c~~~~~ 569 (604)
+.|+|.+|+.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 7899999984
No 303
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.94 E-value=71 Score=30.30 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChHHHHHHhccCCCCCc-ccHHHHHHH
Q 044872 29 TNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEF--VKTSLLNLYVHCGYLADALKVFDDIPDKNV-VSWTAIISG 105 (604)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~ 105 (604)
|..-++.| ...+..|+.+..+.+ ++.|..++.. ...+.+...+..|..+-+..+++.-...+. .-++. +..
T Consensus 17 d~~g~t~L-~~Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~-L~~ 90 (364)
T 3ljn_A 17 DDENMEKI-HVAARKGQTDEVRRL----IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKP-IHL 90 (364)
T ss_dssp CHHHHHHH-HHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCH-HHH
T ss_pred CCCCCCHH-HHHHHcCCHHHHHHH----HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCH-HHH
Confidence 33334433 344456776544444 4455544332 122234445566777777766665443333 22333 333
Q ss_pred HHhCCChhHHHHHHHHHHHCCC
Q 044872 106 YINEGNLEEAINMFRRLLHRGL 127 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~ 127 (604)
.+..|+.+-+..+++.-...|.
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHhccccCC
Confidence 3455666555555554333343
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.83 E-value=51 Score=26.95 Aligned_cols=62 Identities=15% Similarity=0.286 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC---cccHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCC
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKN---VVSWTAIISGYINEGN--LEEAINMFRRLLHRGLKP 129 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 129 (604)
.+.++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3556777777888888888888876542 2233444444444322 345667777777665543
No 305
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.55 E-value=1.1e+02 Score=28.38 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC--cccHHHHHHHHHhCCCh--hHHHHHHHHHHH
Q 044872 68 KTSLLNLYVHCGYLADALKVFDDIPDKN--VVSWTAIISGYINEGNL--EEAINMFRRLLH 124 (604)
Q Consensus 68 ~~~li~~~~~~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~--~~A~~~~~~m~~ 124 (604)
...++.-|...|+.++|...++++..|. ...-..+|......++. +.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4567888888999999999999987654 11222333333333332 334456666654
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.65 E-value=1.5e+02 Score=26.33 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=12.4
Q ss_pred HHHHHhCCCchHHHHHHHHHH
Q 044872 204 IQGYASNGFPKEALDMFYNMQ 224 (604)
Q Consensus 204 i~~~~~~g~~~~A~~~~~~m~ 224 (604)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445556666666666665544
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.07 E-value=1.1e+02 Score=26.83 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHc--cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHhhCCCc
Q 044872 418 DLAEHVLNQLIA--LEPWNSGNYVLLSNIYSASHKWNDAAKIRSMMGDKGIQ 467 (604)
Q Consensus 418 ~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 467 (604)
+....+|..|.. ++-.-+..|...+..+...|++.+|.++|+.-++++-+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 456688888875 55666778999999999999999999999988876654
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.69 E-value=2.7e+02 Score=25.99 Aligned_cols=109 Identities=14% Similarity=0.055 Sum_probs=57.8
Q ss_pred hhhcCCchHHHHHHHHHHhCCC------CCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGF------LPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEFVKTSLLNLYVHC 78 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 78 (604)
+...|++++|+..|+..+..=+ +-+..-...++..|. .+-.|..+ ++.+..+..+....+.-+.+|...
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr---EYilal~i--El~Rr~l~~~~~kR~lELAAYFT~ 198 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAR---EYILGLSI--ELERRSLKEGNTVRMLELAAYFTK 198 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHH---HHHHHHHH--HHHHHTCCTTCHHHHHHHHHHGGG
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHH---HHHHHHHH--HHHHHhcCcccHHHHHHHHHHhcc
Confidence 3567888888888888765310 001112333444442 23333333 333333333333444444444433
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 044872 79 GYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEAINMFRRLLHRGL 127 (604)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 127 (604)
=+++-.-.. .+...-|....+.+++..|-.+-+++++.+.
T Consensus 199 c~LQp~H~~---------LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 199 AKLSPIHRT---------NALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp SCCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CCCcHHHHH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 333222222 2455566777788888888888888887654
No 309
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.65 E-value=1.7e+02 Score=25.02 Aligned_cols=60 Identities=18% Similarity=0.101 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCCCHH--HHH-----HHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHH
Q 044872 385 LDEAHELIKSMPMEPNAI--VWG-----ALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNI 444 (604)
Q Consensus 385 ~~~A~~~~~~~~~~p~~~--~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 444 (604)
++.|+.+++.+...-|.. .-. ..+..|.+.|.+++|.+++++..+..|.+...-.-|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 456777777763222211 111 233458888889999988888887666554444444333
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.54 E-value=1.9e+02 Score=24.80 Aligned_cols=22 Identities=9% Similarity=-0.117 Sum_probs=11.9
Q ss_pred HHHHHHhcCChHHHHHHhccCC
Q 044872 71 LLNLYVHCGYLADALKVFDDIP 92 (604)
Q Consensus 71 li~~~~~~g~~~~A~~~f~~~~ 92 (604)
.+...++.|+.+-+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 3444555666666655555433
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=36.53 E-value=1.8e+02 Score=24.19 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=54.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHhccCC-C---CCcccHHHHHHHHHhCC
Q 044872 37 LKACAREHDFQLGVRSHSLIVKAGLDCDEFV--KTSLLNLYVHCGYLADALKVFDDIP-D---KNVVSWTAIISGYINEG 110 (604)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g 110 (604)
+...+..|+.+ +.+.+++.|..++... ..+.+...+..|..+-+..+++.-. . +|..-++.|.. .++.|
T Consensus 43 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~ 117 (201)
T 3hra_A 43 LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP-AAEKG 117 (201)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHH-HHHTT
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHH-HHHcC
Confidence 33444556654 4444455665544321 2233444556778777777774432 1 23223333332 34455
Q ss_pred ChhHHHHHHHHHHHCC-CCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC
Q 044872 111 NLEEAINMFRRLLHRG-LKP---DSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRN 165 (604)
Q Consensus 111 ~~~~A~~~~~~m~~~g-~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 165 (604)
+.+- ++.+.+.| ..+ |..-.+.+..++........-.++.+.+++.|..++
T Consensus 118 ~~~~----v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 118 HIDN----VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CHHH----HHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred CHHH----HHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 5543 33333333 222 222233333333322223333556666666665554
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.31 E-value=56 Score=29.10 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=28.4
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhh-------HHHHHHHHh--cCCChHHHHHHHHHHH
Q 044872 106 YINEGNLEEAINMFRRLLHRGLKPDSFS-------IVRVLTACT--QLGDLSTAKWIHGYVN 158 (604)
Q Consensus 106 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~g~~~~a~~~~~~~~ 158 (604)
.++.|+.+....+++.+...|..++... .+.+..++. +.|+.+-++.+++.-.
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 3456677766666666666555544222 233333332 4566666666665543
No 313
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.98 E-value=81 Score=25.73 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---cccHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCC
Q 044872 270 GTTLIDMYAKCGRMAQACKVFREMKDKD---QVVWNAVVSGLSMNGY--VKVAFGVFGQLEKCGIQPN 332 (604)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 332 (604)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3567777888888888888888887552 2233444445544322 3456677777776664443
No 314
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=34.13 E-value=12 Score=22.31 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=12.9
Q ss_pred cCCcccee-ccccccCCCC
Q 044872 586 DNNRFHCF-IEGSCSCKDF 603 (604)
Q Consensus 586 ~~~~~h~~-~~g~~s~~~~ 603 (604)
.|-.-|.. .+|.|||+-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 35555666 5899999976
No 315
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=34.01 E-value=89 Score=24.88 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHcc
Q 044872 177 AKCGNMEKARRVFDQ 191 (604)
Q Consensus 177 ~~~g~~~~A~~~~~~ 191 (604)
++.|+.+-+.-+++.
T Consensus 109 ~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 109 VQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHTCHHHHHHHHTT
T ss_pred HHhChHHHHHHHHhc
Confidence 334444444444443
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=33.45 E-value=2.3e+02 Score=24.29 Aligned_cols=19 Identities=11% Similarity=-0.062 Sum_probs=10.2
Q ss_pred HHHHHhcCChHHHHHHhcc
Q 044872 72 LNLYVHCGYLADALKVFDD 90 (604)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~ 90 (604)
+...+..|+.+-+..+++.
T Consensus 48 L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 48 LMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHhC
Confidence 3344455666666555554
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=32.98 E-value=2.3e+02 Score=24.22 Aligned_cols=46 Identities=9% Similarity=0.083 Sum_probs=32.7
Q ss_pred HHHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044872 200 WSSMIQGYA---SNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLG 246 (604)
Q Consensus 200 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (604)
.-.+|+++. +..+++.|+-.+.+|++.| .|....-..++.+....|
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 334555554 4689999999999999999 776665556666665555
No 318
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.76 E-value=1.5e+02 Score=27.96 Aligned_cols=16 Identities=0% Similarity=-0.180 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHh
Q 044872 277 YAKCGRMAQACKVFRE 292 (604)
Q Consensus 277 ~~~~g~~~~A~~~~~~ 292 (604)
.+..|+.+-+..+++.
T Consensus 180 A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 180 AMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3455666666666554
No 319
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.16 E-value=5.1e+02 Score=28.47 Aligned_cols=111 Identities=11% Similarity=-0.203 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCchHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCH-------
Q 044872 331 PNGNTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMIEHYGCMVDLLGRSGQLDEAHELIKSM--PMEPNA------- 401 (604)
Q Consensus 331 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~------- 401 (604)
|+..+. ++..|...|.++-+.++.. -++.+...--.+..+|...|++++|.+.|+++ ++.++.
T Consensus 810 ~~~~~~--l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~ 881 (950)
T 4gq2_M 810 NDLVTE--LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLR 881 (950)
T ss_dssp CCHHHH--HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGH
T ss_pred CccHHH--HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchh
Q ss_pred ----------------HHHHHHHHHHHhcCChHHHHHHHHHHHc-cCCCCch----hHHHHHHHHHhcC
Q 044872 402 ----------------IVWGALLAGCRLHKKTDLAEHVLNQLIA-LEPWNSG----NYVLLSNIYSASH 449 (604)
Q Consensus 402 ----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~g 449 (604)
.-|.-++.-+-+++-++.+.+..+.+++ ..++++. .+..+..+.+..|
T Consensus 882 ~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 882 EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 320
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.71 E-value=1e+02 Score=24.72 Aligned_cols=37 Identities=14% Similarity=-0.010 Sum_probs=16.5
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 044872 145 GDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGN 181 (604)
Q Consensus 145 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 181 (604)
+..-.|.++++.+.+.+...+..|..--++.+...|-
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3334455555555444433333333334444444443
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.13 E-value=2.8e+02 Score=23.59 Aligned_cols=17 Identities=6% Similarity=-0.165 Sum_probs=8.3
Q ss_pred HHHhcCChHHHHHHhcc
Q 044872 74 LYVHCGYLADALKVFDD 90 (604)
Q Consensus 74 ~~~~~g~~~~A~~~f~~ 90 (604)
..+..|+.+-+..+++.
T Consensus 46 ~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 46 WACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHh
Confidence 33445555555555543
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.03 E-value=79 Score=23.40 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHHH
Q 044872 281 GRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVAF 318 (604)
Q Consensus 281 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 318 (604)
...+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887777765554
No 323
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.83 E-value=3.6e+02 Score=24.77 Aligned_cols=15 Identities=0% Similarity=-0.135 Sum_probs=7.2
Q ss_pred HhcCCHHHHHHHHHh
Q 044872 278 AKCGRMAQACKVFRE 292 (604)
Q Consensus 278 ~~~g~~~~A~~~~~~ 292 (604)
++.|+.+-+.-+++.
T Consensus 309 ~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 309 RRNYDHSLVKVLLSH 323 (337)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 345555554444443
No 324
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=26.71 E-value=3e+02 Score=23.49 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHH---hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044872 201 SSMIQGYA---SNGFPKEALDMFYNMQRENLKPEYYTMVGVLSACASLG 246 (604)
Q Consensus 201 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 246 (604)
-.+|+++. +..+++.|+-.+.+|++.|-.|....-..++.+....|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555554 45899999999999999998777666556666655554
No 325
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.60 E-value=3e+02 Score=23.44 Aligned_cols=86 Identities=10% Similarity=-0.030 Sum_probs=40.4
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCc----------------ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhh--
Q 044872 72 LNLYVHCGYLADALKVFDDIPDKNV----------------VSWTAIISGYINEGNLEEAINMFRRLLHRGLKPDSFS-- 133 (604)
Q Consensus 72 i~~~~~~g~~~~A~~~f~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-- 133 (604)
+...+..|..+-+..+++.-...+. .-++.|..+ +..|+. ++++.+.+.|..++...
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~ga~~~~~d~~ 153 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFA-ACVGSE----EIVRLLIEHGADIRAQDSL 153 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHH-HHHTCH----HHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHH-HHcCCH----HHHHHHHHCCCCCCCCCCC
Confidence 3444566777766666655333222 123333322 334443 23334444554443221
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 044872 134 IVRVLTACTQLGDLSTAKWIHGYVNEAGK 162 (604)
Q Consensus 134 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 162 (604)
-.+.+...+..|+.+.+..+.+.+.+.|.
T Consensus 154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 154 GNTVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp SCCHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 11233444555666666666666666654
No 326
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.52 E-value=1.3e+02 Score=30.24 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 044872 401 AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWN-------SGNYVLLSNIYSASHKWNDAAKIRSMMGDK 464 (604)
Q Consensus 401 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 464 (604)
...+|.+++.|...+.++.|..+..+.. .|.+ ...+..++.++.-.++|.+|.+.+.....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3467777777888888888888777764 2322 124455788888888898888888877654
No 327
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=26.09 E-value=21 Score=24.37 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=17.8
Q ss_pred ceEEEecCCccceeccccccCC
Q 044872 580 REIIVRDNNRFHCFIEGSCSCK 601 (604)
Q Consensus 580 ~~~~~~~~~~~h~~~~g~~s~~ 601 (604)
+.|=+.|.+..|+|+||+-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566889999999999997644
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=25.63 E-value=2.3e+02 Score=24.13 Aligned_cols=82 Identities=7% Similarity=-0.018 Sum_probs=40.8
Q ss_pred hhhcCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChH
Q 044872 5 FVSNDCFQHAIEFYNSMRNEGFLPTNFTFPFVLKACAREHDFQLGVRSHSLIVKAGLDCDEF--VKTSLLNLYVHCGYLA 82 (604)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~ 82 (604)
.++.|+.+....+++.-...-..++..-.+. +...+..|+.+. .+.+++.|..++.. ...+.+...+..|..+
T Consensus 13 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 87 (231)
T 3aji_A 13 LAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAASAGXDE 87 (231)
T ss_dssp HHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHH
Confidence 4567777777776665322111223333333 333445666544 44455666554432 1222334445567776
Q ss_pred HHHHHhccC
Q 044872 83 DALKVFDDI 91 (604)
Q Consensus 83 ~A~~~f~~~ 91 (604)
-+..+++.-
T Consensus 88 ~v~~Ll~~g 96 (231)
T 3aji_A 88 IVKALLVKG 96 (231)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 666666543
No 329
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=25.17 E-value=36 Score=24.76 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=23.8
Q ss_pred cchHHHHHHHHHHHHHHHHCCCccCCcccc
Q 044872 492 PLSEKIYSKLDELATKLKAAGFVPTTDHVL 521 (604)
Q Consensus 492 ~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~ 521 (604)
+...+++..+++...+++..|+.||-..+-
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G 42 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc
Confidence 445567777888888999999999987653
No 330
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.48 E-value=1.3e+02 Score=24.25 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=28.5
Q ss_pred HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 044872 122 LLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEAGKGRNVFVATSLVDLYAKCGNM 182 (604)
Q Consensus 122 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 182 (604)
+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 18 l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 18 IKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 444555543322 223344444444555666666666655444444444445555555543
No 331
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.08 E-value=2.4e+02 Score=28.45 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHchhhcCCCCch--HHHH-HHHHHHhhcCCHHHHHHHHHhC
Q 044872 334 NTFVGLLCGCTHAGLVDEGRQFFNSMSRVFSLTPMI--EHYG-CMVDLLGRSGQLDEAHELIKSM 395 (604)
Q Consensus 334 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~-~li~~~~~~g~~~~A~~~~~~~ 395 (604)
..++.+++.|.+.+.+++|..+.....--..-.++. ..|. .+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455666677777777777777777553100001111 1222 2234555567777776666554
No 332
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.75 E-value=4.6e+02 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHccCC
Q 044872 152 WIHGYVNEAGKGRNVFVATSLVDLYAKCGNMEKARRVFDQMP 193 (604)
Q Consensus 152 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 193 (604)
+++..+.+.|+.|...+..-++..+.+.=.++.+.++++.+.
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l 250 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF 250 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH
Confidence 566777777877777777777777777777777878777653
No 333
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.16 E-value=2.4e+02 Score=28.33 Aligned_cols=71 Identities=11% Similarity=0.017 Sum_probs=36.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHH
Q 044872 375 MVDLLGRSGQLDEAHELIKSM-PMEPN-AIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIY 445 (604)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 445 (604)
|.+...-...++.|...|..+ ...|+ ...||.|.-.....|+.-.|.-.|-+.+......+.+...|...+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 334444445556666666555 33343 335565555555555555555555555543333444555554444
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.11 E-value=1.2e+02 Score=25.03 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=38.1
Q ss_pred hHHHHHHHH-HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCCH
Q 044872 113 EEAINMFRR-LLHRGLKPDSFSIVRVLTACTQLGDLSTAKWIHGYVNEA--GKGRNVFVATSLVDLYAKCGNM 182 (604)
Q Consensus 113 ~~A~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~ 182 (604)
+.+++-+.+ +.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344444433 34456665443 234455555555666677777777766 5555544444455666666643
No 335
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.03 E-value=2.6e+02 Score=24.24 Aligned_cols=69 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHchhhcCCCCch------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 044872 349 VDEGRQFFNSMSRVFSLTPMI------EHYGCMVDLLGRSGQLDEAHELIKSM-PMEPNAIVWGALLAGCRLHKKT 417 (604)
Q Consensus 349 ~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~ 417 (604)
++.|..+|+.+.+...+.... -.--..+-.|.+.|.+++|.+++++. +..|+..-...-+....+.+|.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~ 163 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNL 163 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
No 336
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=21.58 E-value=2.3e+02 Score=20.43 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCHHHH
Q 044872 280 CGRMAQACKVFREMKDKDQVVWNAVVSGLSMNGYVKVA 317 (604)
Q Consensus 280 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 317 (604)
....+.|.++++.+..+...++..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45677888888888877777788777777776654433
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.35 E-value=2.6e+02 Score=22.31 Aligned_cols=59 Identities=7% Similarity=-0.083 Sum_probs=25.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 044872 223 MQRENLKPEYYTMVGVLSACASLGALELGVWASSFMERNEFLSNPVLGTTLIDMYAKCGR 282 (604)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 282 (604)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+.---++.+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 3344554443322 2233333333344455555555554444343333333444555444
No 338
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.81 E-value=1.8e+02 Score=30.40 Aligned_cols=64 Identities=17% Similarity=0.049 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHccCCCCchhHHHHHHHHHhcCCh
Q 044872 385 LDEAHELIKSMPMEPNAIVWGALLAGCRLHKKTDLAEHVLNQLIALEPWNSGNYVLLSNIYSASHKW 451 (604)
Q Consensus 385 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 451 (604)
.+.|.++.+.|+ ...............|++..|.++.+.++..+|+|..+-..++++|.+.|.-
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 345666666664 2233333445566889999999999999999999999999999998877743
No 339
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.55 E-value=1e+02 Score=22.76 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=28.3
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhCCChhHH
Q 044872 79 GYLADALKVFDDIPDKNVVSWTAIISGYINEGNLEEA 115 (604)
Q Consensus 79 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 115 (604)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4678888888888888888888888888766765544
No 340
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.42 E-value=80 Score=20.92 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 044872 112 LEEAINMFRRLLHRGLKPDSFSIVRVLTAC 141 (604)
Q Consensus 112 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 141 (604)
.++|.+.|.+|++..-.+..-||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467888888887754445567888888777
No 341
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.32 E-value=3.5e+02 Score=22.20 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=33.8
Q ss_pred hcCCHHHHHHHHHhC--CC-CC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHc
Q 044872 381 RSGQLDEAHELIKSM--PM-EP--NAIVWGALLA-G-----CRLHKKTDLAEHVLNQLIA 429 (604)
Q Consensus 381 ~~g~~~~A~~~~~~~--~~-~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 429 (604)
..|++-+|-++++.. .. .| +...|..||. . ..+.||...|..++++.++
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 348888998888887 21 23 3446777777 2 2456888888888887764
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.03 E-value=1.5e+02 Score=23.24 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=22.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 044872 102 IISGYINEGNLEEAINMFRRLLHRGLKPDSFSIVRVLTACTQLG 145 (604)
Q Consensus 102 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 145 (604)
++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555556666666655554445445444444444333
Done!