Query 044874
Match_columns 269
No_of_seqs 310 out of 2203
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 3E-19 6.5E-24 133.3 11.4 92 153-263 8-99 (103)
2 cd01807 GDX_N ubiquitin-like d 99.8 2.7E-19 5.9E-24 126.0 9.6 73 1-73 1-73 (74)
3 cd01793 Fubi Fubi ubiquitin-li 99.8 3.5E-19 7.6E-24 125.5 9.9 74 1-76 1-74 (74)
4 PTZ00044 ubiquitin; Provisiona 99.8 9.1E-19 2E-23 124.0 10.1 76 1-76 1-76 (76)
5 cd01802 AN1_N ubiquitin-like d 99.8 1.6E-18 3.4E-23 129.4 10.0 76 1-76 28-103 (103)
6 cd01797 NIRF_N amino-terminal 99.8 2.6E-18 5.6E-23 122.0 9.4 74 1-74 1-76 (78)
7 cd01803 Ubiquitin Ubiquitin. U 99.8 5.9E-18 1.3E-22 119.7 10.0 76 1-76 1-76 (76)
8 cd01806 Nedd8 Nebb8-like ubiq 99.8 7.4E-18 1.6E-22 119.2 10.4 76 1-76 1-76 (76)
9 cd01810 ISG15_repeat2 ISG15 ub 99.8 5.8E-18 1.3E-22 119.2 9.3 74 3-76 1-74 (74)
10 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 5.7E-18 1.2E-22 118.5 8.4 71 1-71 2-72 (73)
11 cd01804 midnolin_N Ubiquitin-l 99.7 7E-18 1.5E-22 119.9 9.0 76 1-77 2-77 (78)
12 cd01807 GDX_N ubiquitin-like d 99.7 5.9E-18 1.3E-22 119.2 8.4 72 186-263 1-72 (74)
13 cd01793 Fubi Fubi ubiquitin-li 99.7 8.7E-18 1.9E-22 118.3 8.3 74 186-268 1-74 (74)
14 cd01805 RAD23_N Ubiquitin-like 99.7 2.4E-17 5.2E-22 117.0 10.1 74 1-74 1-76 (77)
15 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.5E-17 3.2E-22 116.4 8.2 70 186-261 2-71 (73)
16 cd01794 DC_UbP_C dendritic cel 99.7 2.9E-17 6.3E-22 114.1 8.3 69 3-71 1-69 (70)
17 cd01797 NIRF_N amino-terminal 99.7 2.7E-17 5.8E-22 116.7 8.2 72 186-263 1-74 (78)
18 cd01810 ISG15_repeat2 ISG15 ub 99.7 2.5E-17 5.4E-22 116.0 7.7 70 188-263 1-70 (74)
19 cd01809 Scythe_N Ubiquitin-lik 99.7 8.3E-17 1.8E-21 112.6 9.5 72 1-72 1-72 (72)
20 cd01798 parkin_N amino-termina 99.7 5.5E-17 1.2E-21 113.0 8.4 70 3-72 1-70 (70)
21 PTZ00044 ubiquitin; Provisiona 99.7 6.2E-17 1.3E-21 114.6 8.6 72 186-263 1-72 (76)
22 cd01798 parkin_N amino-termina 99.7 7.4E-17 1.6E-21 112.4 7.6 69 188-262 1-69 (70)
23 cd01804 midnolin_N Ubiquitin-l 99.7 1.1E-16 2.4E-21 113.8 8.4 72 186-264 2-73 (78)
24 cd01794 DC_UbP_C dendritic cel 99.7 7.5E-17 1.6E-21 112.0 7.2 67 189-261 2-68 (70)
25 cd01792 ISG15_repeat1 ISG15 ub 99.7 1.1E-16 2.4E-21 114.4 8.2 74 1-74 3-78 (80)
26 cd01806 Nedd8 Nebb8-like ubiq 99.7 2.1E-16 4.6E-21 111.7 9.0 76 186-268 1-76 (76)
27 cd01803 Ubiquitin Ubiquitin. U 99.7 2.2E-16 4.8E-21 111.6 8.5 76 186-268 1-76 (76)
28 cd01808 hPLIC_N Ubiquitin-like 99.7 3.2E-16 6.9E-21 109.4 9.1 71 1-72 1-71 (71)
29 KOG0003 Ubiquitin/60s ribosoma 99.7 9.1E-18 2E-22 121.3 0.7 76 186-268 1-76 (128)
30 KOG0005 Ubiquitin-like protein 99.7 7.7E-17 1.7E-21 104.0 4.4 70 1-70 1-70 (70)
31 cd01805 RAD23_N Ubiquitin-like 99.7 4.1E-16 9E-21 110.6 8.7 71 186-262 1-73 (77)
32 KOG0003 Ubiquitin/60s ribosoma 99.7 7.9E-18 1.7E-22 121.6 -0.2 77 1-77 1-77 (128)
33 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.9E-16 6.3E-21 112.2 7.6 74 186-265 3-78 (80)
34 PF00240 ubiquitin: Ubiquitin 99.7 6.4E-16 1.4E-20 107.2 8.4 68 6-73 1-68 (69)
35 KOG0004 Ubiquitin/40S ribosoma 99.6 1.2E-16 2.7E-21 123.9 4.5 77 1-77 1-77 (156)
36 cd01809 Scythe_N Ubiquitin-lik 99.6 1.2E-15 2.6E-20 106.6 8.7 71 186-262 1-71 (72)
37 cd01796 DDI1_N DNA damage indu 99.6 9.7E-16 2.1E-20 106.9 8.0 68 3-70 1-70 (71)
38 cd01800 SF3a120_C Ubiquitin-li 99.6 1.2E-15 2.5E-20 108.0 8.5 70 8-77 5-74 (76)
39 cd01796 DDI1_N DNA damage indu 99.6 7.4E-16 1.6E-20 107.5 7.3 67 188-260 1-69 (71)
40 cd01808 hPLIC_N Ubiquitin-like 99.6 1E-15 2.2E-20 106.9 8.0 70 186-262 1-70 (71)
41 KOG0005 Ubiquitin-like protein 99.6 5.3E-16 1.2E-20 100.2 4.5 70 186-261 1-70 (70)
42 cd01790 Herp_N Homocysteine-re 99.6 1.9E-15 4.1E-20 106.4 7.5 71 1-71 2-78 (79)
43 KOG0004 Ubiquitin/40S ribosoma 99.6 3.4E-16 7.4E-21 121.5 3.9 76 186-268 1-76 (156)
44 cd01790 Herp_N Homocysteine-re 99.6 1.9E-15 4.2E-20 106.4 7.2 72 186-261 2-77 (79)
45 PF00240 ubiquitin: Ubiquitin 99.6 4.3E-15 9.3E-20 103.0 8.8 66 191-262 1-66 (69)
46 cd01763 Sumo Small ubiquitin-r 99.6 7.4E-15 1.6E-19 106.5 10.2 76 1-76 12-87 (87)
47 cd01813 UBP_N UBP ubiquitin pr 99.6 4.8E-15 1E-19 104.1 8.3 70 1-71 1-73 (74)
48 cd01812 BAG1_N Ubiquitin-like 99.6 5.4E-15 1.2E-19 103.1 8.1 70 1-71 1-70 (71)
49 cd01800 SF3a120_C Ubiquitin-li 99.6 6.6E-15 1.4E-19 104.1 7.6 65 194-264 6-70 (76)
50 cd01812 BAG1_N Ubiquitin-like 99.6 1.7E-14 3.6E-19 100.6 8.0 69 186-261 1-69 (71)
51 cd01813 UBP_N UBP ubiquitin pr 99.5 2.3E-14 5E-19 100.6 8.0 69 186-261 1-72 (74)
52 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 9.8E-15 2.1E-19 101.4 5.2 56 205-263 19-75 (75)
53 cd01763 Sumo Small ubiquitin-r 99.5 1.1E-13 2.4E-18 100.4 10.3 76 182-263 8-83 (87)
54 smart00213 UBQ Ubiquitin homol 99.5 7E-14 1.5E-18 95.1 7.9 64 1-65 1-64 (64)
55 TIGR00601 rad23 UV excision re 99.5 1E-13 2.2E-18 125.6 9.6 75 1-75 1-78 (378)
56 TIGR00601 rad23 UV excision re 99.5 2E-13 4.4E-18 123.6 8.5 73 186-264 1-76 (378)
57 cd01799 Hoil1_N Ubiquitin-like 99.4 4.6E-13 9.9E-18 94.2 7.5 69 2-71 2-74 (75)
58 cd01799 Hoil1_N Ubiquitin-like 99.4 4.8E-13 1E-17 94.1 7.6 62 193-261 10-73 (75)
59 cd01815 BMSC_UbP_N Ubiquitin-l 99.4 4E-13 8.6E-18 93.4 5.5 53 19-71 19-74 (75)
60 smart00213 UBQ Ubiquitin homol 99.4 2.8E-12 6E-17 87.1 7.2 64 186-256 1-64 (64)
61 KOG0011 Nucleotide excision re 99.3 6.1E-12 1.3E-16 109.1 7.6 75 1-75 1-77 (340)
62 cd01769 UBL Ubiquitin-like dom 99.3 1.3E-11 2.9E-16 85.0 8.0 67 5-71 2-68 (69)
63 KOG0010 Ubiquitin-like protein 99.3 4E-12 8.7E-17 115.7 6.8 74 1-75 16-89 (493)
64 cd01814 NTGP5 Ubiquitin-like N 99.3 4.9E-12 1.1E-16 93.8 5.5 74 2-75 6-93 (113)
65 PF11976 Rad60-SLD: Ubiquitin- 99.3 2.2E-11 4.9E-16 85.0 7.8 71 1-71 1-72 (72)
66 cd01795 USP48_C USP ubiquitin- 99.3 2E-11 4.4E-16 87.9 7.1 63 12-74 16-79 (107)
67 KOG0011 Nucleotide excision re 99.2 1.3E-11 2.8E-16 107.1 6.7 73 186-262 1-73 (340)
68 cd01814 NTGP5 Ubiquitin-like N 99.2 3.8E-11 8.2E-16 89.1 7.9 63 110-172 19-94 (113)
69 KOG0010 Ubiquitin-like protein 99.2 1.9E-11 4.2E-16 111.3 6.9 75 184-265 14-88 (493)
70 cd01769 UBL Ubiquitin-like dom 99.2 5.3E-11 1.1E-15 82.0 7.6 67 190-262 2-68 (69)
71 PF11976 Rad60-SLD: Ubiquitin- 99.2 1.3E-10 2.8E-15 81.1 8.4 70 186-261 1-71 (72)
72 cd01795 USP48_C USP ubiquitin- 99.1 1E-10 2.2E-15 84.3 6.3 60 198-262 16-76 (107)
73 cd01789 Alp11_N Ubiquitin-like 99.0 2.3E-09 5E-14 77.1 9.7 73 187-264 3-82 (84)
74 cd01789 Alp11_N Ubiquitin-like 99.0 3.1E-09 6.7E-14 76.4 8.5 70 2-71 3-80 (84)
75 KOG0001 Ubiquitin and ubiquiti 99.0 9.1E-09 2E-13 71.0 9.7 72 3-74 2-73 (75)
76 cd01788 ElonginB Ubiquitin-lik 98.9 8.8E-09 1.9E-13 76.2 7.7 76 1-76 1-84 (119)
77 PLN02560 enoyl-CoA reductase 98.9 7E-09 1.5E-13 92.0 8.5 69 1-69 1-80 (308)
78 KOG0001 Ubiquitin and ubiquiti 98.8 2.1E-08 4.5E-13 69.1 8.4 69 188-262 2-70 (75)
79 KOG4248 Ubiquitin-like protein 98.8 7.8E-09 1.7E-13 101.3 6.8 73 2-75 4-76 (1143)
80 PF14560 Ubiquitin_2: Ubiquiti 98.8 2.7E-08 5.8E-13 72.1 7.6 71 2-72 3-83 (87)
81 PF14560 Ubiquitin_2: Ubiquiti 98.8 4.9E-08 1.1E-12 70.7 8.4 74 187-265 3-85 (87)
82 PLN02560 enoyl-CoA reductase 98.8 2.4E-08 5.2E-13 88.6 7.9 70 186-261 1-81 (308)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.6 1.8E-07 4E-12 70.5 8.6 73 2-74 4-90 (111)
84 KOG4248 Ubiquitin-like protein 98.6 6E-08 1.3E-12 95.2 6.8 73 186-265 3-75 (1143)
85 cd01801 Tsc13_N Ubiquitin-like 98.6 1.6E-07 3.4E-12 66.4 6.9 68 2-69 2-74 (77)
86 cd01801 Tsc13_N Ubiquitin-like 98.6 1.4E-07 2.9E-12 66.7 6.6 53 204-260 20-74 (77)
87 PF13881 Rad60-SLD_2: Ubiquiti 98.6 6E-07 1.3E-11 67.7 10.0 77 186-262 3-87 (111)
88 cd01811 OASL_repeat1 2'-5' oli 98.6 4.7E-07 1E-11 61.8 8.0 72 1-73 1-77 (80)
89 cd01788 ElonginB Ubiquitin-lik 98.6 2.4E-07 5.3E-12 68.6 6.9 69 186-261 3-78 (119)
90 PF11543 UN_NPL4: Nuclear pore 98.5 2.9E-07 6.2E-12 65.4 4.9 69 1-70 5-78 (80)
91 cd00196 UBQ Ubiquitin-like pro 98.4 2.5E-06 5.5E-11 56.0 8.2 67 5-71 2-68 (69)
92 PF11543 UN_NPL4: Nuclear pore 98.3 1.2E-06 2.7E-11 62.2 5.9 71 185-262 4-79 (80)
93 cd00196 UBQ Ubiquitin-like pro 98.2 9.2E-06 2E-10 53.3 7.6 63 194-262 6-68 (69)
94 KOG1769 Ubiquitin-like protein 98.2 1.9E-05 4.1E-10 57.3 9.3 76 2-77 22-97 (99)
95 KOG3493 Ubiquitin-like protein 98.2 6.7E-07 1.5E-11 59.1 1.3 69 2-70 3-71 (73)
96 KOG1872 Ubiquitin-specific pro 98.1 9.3E-06 2E-10 74.2 7.5 75 3-78 6-81 (473)
97 KOG0006 E3 ubiquitin-protein l 98.1 7.7E-06 1.7E-10 71.0 6.3 73 1-73 1-77 (446)
98 cd01811 OASL_repeat1 2'-5' oli 98.1 1.9E-05 4.1E-10 54.0 6.9 72 91-170 2-78 (80)
99 KOG0006 E3 ubiquitin-protein l 97.8 5.3E-05 1.2E-09 65.9 6.1 64 197-265 14-77 (446)
100 KOG4495 RNA polymerase II tran 97.6 9.5E-05 2.1E-09 53.0 4.1 62 1-62 1-65 (110)
101 KOG1769 Ubiquitin-like protein 97.6 0.00091 2E-08 48.7 9.0 78 184-267 19-96 (99)
102 PF11470 TUG-UBL1: GLUT4 regul 97.3 0.0012 2.6E-08 44.8 6.8 63 192-260 3-65 (65)
103 PF11470 TUG-UBL1: GLUT4 regul 97.3 0.0013 2.7E-08 44.7 6.5 63 7-69 3-65 (65)
104 KOG4495 RNA polymerase II tran 97.3 0.00059 1.3E-08 49.0 4.9 61 186-253 3-65 (110)
105 PF13019 Telomere_Sde2: Telome 97.2 0.0027 5.9E-08 50.7 9.0 77 1-77 1-89 (162)
106 PF08817 YukD: WXG100 protein 97.2 0.00093 2E-08 47.2 5.6 68 2-69 4-78 (79)
107 KOG3493 Ubiquitin-like protein 97.2 0.00019 4.1E-09 47.7 1.6 69 187-261 3-71 (73)
108 COG5227 SMT3 Ubiquitin-like pr 97.1 0.00076 1.7E-08 47.9 4.2 76 2-77 26-101 (103)
109 KOG1872 Ubiquitin-specific pro 97.1 0.0012 2.5E-08 60.8 6.5 68 187-261 5-73 (473)
110 PF08817 YukD: WXG100 protein 97.1 0.0023 5.1E-08 45.2 6.6 69 186-260 3-78 (79)
111 PF00789 UBX: UBX domain; Int 97.1 0.0062 1.4E-07 43.1 8.7 69 2-70 8-81 (82)
112 PF10302 DUF2407: DUF2407 ubiq 97.0 0.0022 4.8E-08 47.2 5.8 58 3-60 3-65 (97)
113 KOG0013 Uncharacterized conser 96.9 0.0018 3.9E-08 53.4 5.1 64 9-72 155-218 (231)
114 PF10302 DUF2407: DUF2407 ubiq 96.8 0.0034 7.3E-08 46.2 5.8 52 197-251 12-65 (97)
115 PF00789 UBX: UBX domain; Int 96.8 0.017 3.6E-07 40.9 8.8 72 184-261 5-81 (82)
116 smart00166 UBX Domain present 96.7 0.017 3.8E-07 40.7 8.6 68 2-69 6-78 (80)
117 COG5417 Uncharacterized small 96.6 0.026 5.7E-07 38.8 8.3 67 190-260 11-80 (81)
118 COG5227 SMT3 Ubiquitin-like pr 96.6 0.0056 1.2E-07 43.6 5.1 81 181-267 20-100 (103)
119 KOG1639 Steroid reductase requ 96.4 0.007 1.5E-07 51.3 5.7 69 1-69 1-76 (297)
120 COG5417 Uncharacterized small 96.4 0.024 5.3E-07 38.9 7.2 69 1-69 5-80 (81)
121 cd01770 p47_UBX p47-like ubiqu 96.4 0.029 6.3E-07 39.6 8.1 66 2-67 6-75 (79)
122 smart00166 UBX Domain present 96.3 0.036 7.7E-07 39.1 8.2 70 185-260 4-78 (80)
123 cd01772 SAKS1_UBX SAKS1-like U 96.2 0.067 1.5E-06 37.7 8.9 67 2-69 6-77 (79)
124 cd01767 UBX UBX (ubiquitin reg 96.2 0.058 1.3E-06 37.7 8.6 64 2-66 4-72 (77)
125 cd01767 UBX UBX (ubiquitin reg 96.1 0.055 1.2E-06 37.8 8.1 67 186-260 3-74 (77)
126 KOG0013 Uncharacterized conser 96.1 0.01 2.2E-07 49.1 4.7 63 197-265 157-219 (231)
127 PRK06437 hypothetical protein; 96.0 0.057 1.2E-06 36.8 7.7 59 195-268 9-67 (67)
128 KOG1639 Steroid reductase requ 96.0 0.015 3.3E-07 49.3 5.6 71 187-261 2-77 (297)
129 cd01774 Faf1_like2_UBX Faf1 ik 96.0 0.073 1.6E-06 38.1 8.5 69 185-260 4-82 (85)
130 cd01773 Faf1_like1_UBX Faf1 ik 95.9 0.12 2.5E-06 36.8 8.7 69 2-71 7-80 (82)
131 cd01773 Faf1_like1_UBX Faf1 ik 95.8 0.11 2.3E-06 37.0 8.4 70 185-261 5-79 (82)
132 cd01772 SAKS1_UBX SAKS1-like U 95.7 0.091 2E-06 37.0 7.9 68 186-260 5-77 (79)
133 cd01774 Faf1_like2_UBX Faf1 ik 95.7 0.13 2.9E-06 36.8 8.8 68 2-70 6-83 (85)
134 PF13019 Telomere_Sde2: Telome 95.5 0.11 2.3E-06 41.7 8.2 77 186-268 1-88 (162)
135 cd01770 p47_UBX p47-like ubiqu 95.5 0.11 2.4E-06 36.6 7.5 68 186-258 5-75 (79)
136 PRK08364 sulfur carrier protei 95.3 0.21 4.5E-06 34.3 8.3 66 186-268 5-70 (70)
137 cd01771 Faf1_UBX Faf1 UBX doma 95.2 0.22 4.8E-06 35.2 8.3 69 185-260 4-77 (80)
138 cd01771 Faf1_UBX Faf1 UBX doma 95.2 0.23 4.9E-06 35.1 8.3 68 2-70 6-78 (80)
139 cd00754 MoaD Ubiquitin domain 94.8 0.19 4.1E-06 35.1 7.1 65 197-268 16-80 (80)
140 cd00565 ThiS ThiaminS ubiquiti 94.7 0.14 3.1E-06 34.5 6.1 57 201-268 9-65 (65)
141 PRK06488 sulfur carrier protei 94.5 0.28 6.2E-06 33.0 7.1 60 194-268 6-65 (65)
142 KOG3206 Alpha-tubulin folding 94.3 0.14 3.1E-06 42.3 6.3 62 13-74 15-83 (234)
143 PF14836 Ubiquitin_3: Ubiquiti 94.2 0.55 1.2E-05 33.7 8.4 66 11-77 14-85 (88)
144 PF02597 ThiS: ThiS family; I 94.0 0.25 5.5E-06 34.1 6.3 65 198-268 13-77 (77)
145 PF15044 CLU_N: Mitochondrial 93.9 0.11 2.3E-06 36.5 4.2 56 203-262 1-57 (76)
146 PF15044 CLU_N: Mitochondrial 93.9 0.13 2.8E-06 36.0 4.5 58 17-74 1-60 (76)
147 TIGR01683 thiS thiamine biosyn 93.8 0.28 6E-06 32.9 6.0 56 202-268 9-64 (64)
148 PF11620 GABP-alpha: GA-bindin 93.8 0.17 3.6E-06 35.9 4.9 56 115-170 11-66 (88)
149 PF09379 FERM_N: FERM N-termin 93.3 0.74 1.6E-05 32.0 7.8 58 5-62 1-65 (80)
150 PRK06437 hypothetical protein; 93.3 1.2 2.5E-05 30.3 8.4 58 9-75 9-66 (67)
151 PRK07440 hypothetical protein; 93.1 0.88 1.9E-05 31.2 7.6 62 185-262 4-65 (70)
152 TIGR01687 moaD_arch MoaD famil 92.8 0.92 2E-05 32.3 7.8 67 197-268 16-88 (88)
153 KOG4583 Membrane-associated ER 92.7 0.058 1.3E-06 47.8 1.6 62 186-251 10-73 (391)
154 PRK06488 sulfur carrier protei 92.7 1.2 2.7E-05 29.8 7.8 65 1-76 1-65 (65)
155 TIGR01682 moaD molybdopterin c 92.5 0.99 2.2E-05 31.6 7.5 64 197-268 16-80 (80)
156 PLN02799 Molybdopterin synthas 92.4 0.59 1.3E-05 32.9 6.2 62 197-268 19-82 (82)
157 PF11620 GABP-alpha: GA-bindin 92.0 0.65 1.4E-05 33.0 5.8 63 12-74 4-66 (88)
158 PF14533 USP7_C2: Ubiquitin-sp 91.8 2.3 5.1E-05 35.8 10.2 117 11-134 34-160 (213)
159 cd06406 PB1_P67 A PB1 domain i 91.7 0.66 1.4E-05 32.7 5.6 36 12-47 12-47 (80)
160 cd06409 PB1_MUG70 The MUG70 pr 91.6 0.85 1.8E-05 32.7 6.2 44 2-45 2-48 (86)
161 KOG3206 Alpha-tubulin folding 91.6 0.79 1.7E-05 38.1 6.8 60 200-264 16-82 (234)
162 PRK08364 sulfur carrier protei 91.4 2.2 4.8E-05 29.1 8.0 56 12-76 15-70 (70)
163 PF12436 USP7_ICP0_bdg: ICP0-b 91.1 1.8 3.8E-05 37.5 8.9 142 88-235 67-223 (249)
164 PF14453 ThiS-like: ThiS-like 91.0 1.8 3.9E-05 28.4 6.7 55 1-71 1-55 (57)
165 PRK05863 sulfur carrier protei 90.6 1 2.2E-05 30.3 5.6 60 194-268 6-65 (65)
166 PRK06083 sulfur carrier protei 90.3 2.9 6.2E-05 29.8 7.9 68 184-268 17-84 (84)
167 KOG4583 Membrane-associated ER 90.1 0.12 2.6E-06 45.9 0.8 73 2-74 11-89 (391)
168 COG2104 ThiS Sulfur transfer p 90.1 1.7 3.7E-05 29.7 6.3 52 201-262 12-63 (68)
169 PRK08053 sulfur carrier protei 90.0 1.7 3.7E-05 29.2 6.4 61 194-268 6-66 (66)
170 cd00754 MoaD Ubiquitin domain 89.8 2.3 5.1E-05 29.4 7.2 60 12-76 17-80 (80)
171 PLN02799 Molybdopterin synthas 89.6 1.9 4E-05 30.3 6.6 70 1-75 2-81 (82)
172 PRK11130 moaD molybdopterin sy 89.5 2.9 6.2E-05 29.4 7.5 57 206-268 25-81 (81)
173 cd01760 RBD Ubiquitin-like dom 89.4 1.6 3.5E-05 30.1 5.9 45 3-47 2-46 (72)
174 PF10790 DUF2604: Protein of U 89.0 2.7 5.8E-05 28.2 6.3 66 9-74 4-73 (76)
175 smart00455 RBD Raf-like Ras-bi 88.9 2 4.3E-05 29.5 6.1 45 3-47 2-46 (70)
176 PRK05659 sulfur carrier protei 88.7 2.1 4.6E-05 28.6 6.1 52 201-262 10-61 (66)
177 PF09379 FERM_N: FERM N-termin 88.6 5 0.00011 27.7 8.2 58 190-253 1-65 (80)
178 smart00666 PB1 PB1 domain. Pho 88.5 2.6 5.7E-05 29.3 6.7 44 2-46 3-46 (81)
179 cd06407 PB1_NLP A PB1 domain i 88.2 2.5 5.4E-05 30.0 6.4 45 1-46 1-46 (82)
180 KOG4598 Putative ubiquitin-spe 88.1 0.96 2.1E-05 44.2 5.3 202 12-235 878-1105(1203)
181 PRK07696 sulfur carrier protei 88.1 2.3 5E-05 28.8 5.9 56 194-262 6-62 (67)
182 KOG0012 DNA damage inducible p 87.6 0.88 1.9E-05 40.9 4.4 75 1-75 1-79 (380)
183 PRK05863 sulfur carrier protei 87.4 4.9 0.00011 26.9 7.2 65 1-76 1-65 (65)
184 PRK05659 sulfur carrier protei 87.3 6.3 0.00014 26.2 7.8 66 1-76 1-66 (66)
185 PRK06944 sulfur carrier protei 86.7 4.4 9.6E-05 26.9 6.7 60 194-268 6-65 (65)
186 PF11069 DUF2870: Protein of u 86.3 0.86 1.9E-05 33.2 3.0 33 138-171 3-35 (98)
187 PF08337 Plexin_cytopl: Plexin 85.9 3.1 6.8E-05 39.9 7.5 65 197-264 202-290 (539)
188 PF14453 ThiS-like: ThiS-like 85.9 2.9 6.4E-05 27.4 5.1 47 200-262 9-55 (57)
189 smart00455 RBD Raf-like Ras-bi 85.7 3.8 8.2E-05 28.1 6.0 44 189-238 3-46 (70)
190 PRK08053 sulfur carrier protei 85.6 8.6 0.00019 25.7 8.2 66 1-76 1-66 (66)
191 cd06408 PB1_NoxR The PB1 domai 83.8 6.3 0.00014 28.2 6.5 44 3-47 3-47 (86)
192 cd06406 PB1_P67 A PB1 domain i 83.6 5.5 0.00012 28.1 6.0 45 190-240 5-49 (80)
193 cd01760 RBD Ubiquitin-like dom 83.3 4.3 9.4E-05 28.0 5.4 45 188-238 2-46 (72)
194 cd00565 ThiS ThiaminS ubiquiti 83.3 8.6 0.00019 25.6 6.9 61 9-76 5-65 (65)
195 smart00295 B41 Band 4.1 homolo 83.2 14 0.0003 30.2 9.6 61 2-62 5-72 (207)
196 PF10790 DUF2604: Protein of U 83.0 8 0.00017 25.9 6.2 64 197-262 6-70 (76)
197 PF08337 Plexin_cytopl: Plexin 83.0 8.9 0.00019 36.9 9.1 92 49-170 174-291 (539)
198 PF14451 Ub-Mut7C: Mut7-C ubiq 82.2 5.7 0.00012 28.1 5.8 52 197-262 23-75 (81)
199 KOG2086 Protein tyrosine phosp 82.2 3.9 8.3E-05 37.3 6.0 68 185-257 305-375 (380)
200 TIGR01682 moaD molybdopterin c 82.2 14 0.0003 25.6 7.9 60 12-76 17-80 (80)
201 PF02196 RBD: Raf-like Ras-bin 81.9 6.2 0.00013 27.1 5.8 55 3-57 3-59 (71)
202 COG1977 MoaD Molybdopterin con 81.9 4.6 9.9E-05 28.6 5.3 61 203-268 24-84 (84)
203 PRK07440 hypothetical protein; 81.8 14 0.0003 25.2 7.5 61 9-76 10-70 (70)
204 PF12436 USP7_ICP0_bdg: ICP0-b 80.9 4.7 0.0001 34.8 6.1 72 184-260 67-149 (249)
205 PF14533 USP7_C2: Ubiquitin-sp 80.9 32 0.0007 28.9 11.3 129 112-250 39-193 (213)
206 PF12754 Blt1: Cell-cycle cont 80.8 0.5 1.1E-05 41.7 0.0 58 20-77 103-182 (309)
207 PF10209 DUF2340: Uncharacteri 80.8 5.9 0.00013 30.2 5.8 60 202-262 21-107 (122)
208 PRK06083 sulfur carrier protei 80.5 12 0.00027 26.6 7.1 61 9-76 24-84 (84)
209 TIGR01683 thiS thiamine biosyn 80.2 13 0.00029 24.6 6.9 61 9-76 4-64 (64)
210 TIGR01687 moaD_arch MoaD famil 79.5 15 0.00033 25.9 7.5 62 11-76 16-88 (88)
211 PF10209 DUF2340: Uncharacteri 79.1 5.7 0.00012 30.3 5.2 57 16-72 21-108 (122)
212 PRK11840 bifunctional sulfur c 79.0 5.9 0.00013 35.5 6.1 62 194-269 6-67 (326)
213 PRK07696 sulfur carrier protei 79.0 17 0.00037 24.5 7.7 66 1-76 1-67 (67)
214 KOG2982 Uncharacterized conser 78.9 2.5 5.5E-05 37.6 3.7 55 16-70 353-415 (418)
215 TIGR02958 sec_mycoba_snm4 secr 78.8 14 0.00029 35.0 8.8 75 2-77 4-85 (452)
216 PF00564 PB1: PB1 domain; Int 78.7 8.3 0.00018 26.8 5.8 43 3-46 4-47 (84)
217 PF02597 ThiS: ThiS family; I 78.1 8 0.00017 26.3 5.5 63 12-76 13-77 (77)
218 smart00295 B41 Band 4.1 homolo 76.9 19 0.00042 29.3 8.5 63 185-253 3-72 (207)
219 cd01764 Urm1 Urm1-like ubuitin 76.2 11 0.00023 27.4 5.9 60 201-268 23-94 (94)
220 PRK06944 sulfur carrier protei 75.8 20 0.00043 23.6 8.3 65 1-76 1-65 (65)
221 cd06411 PB1_p51 The PB1 domain 74.8 8.1 0.00018 27.1 4.6 36 11-46 7-42 (78)
222 KOG0012 DNA damage inducible p 74.0 6.6 0.00014 35.5 5.0 62 195-261 11-74 (380)
223 cd01817 RGS12_RBD Ubiquitin do 73.1 18 0.00039 25.0 5.9 44 5-48 4-47 (73)
224 TIGR02958 sec_mycoba_snm4 secr 72.9 19 0.00041 34.0 8.2 74 187-262 4-79 (452)
225 cd06410 PB1_UP2 Uncharacterize 72.4 18 0.00038 26.5 6.2 40 5-45 17-56 (97)
226 cd05992 PB1 The PB1 domain is 71.8 22 0.00047 24.4 6.5 44 2-46 2-46 (81)
227 cd06396 PB1_NBR1 The PB1 domai 71.5 16 0.00034 25.9 5.5 36 8-45 7-44 (81)
228 PF02196 RBD: Raf-like Ras-bin 71.5 17 0.00036 24.9 5.6 52 188-245 3-56 (71)
229 PTZ00380 microtubule-associate 71.2 10 0.00022 29.0 4.8 64 10-73 40-106 (121)
230 KOG2086 Protein tyrosine phosp 71.0 8.4 0.00018 35.2 5.0 66 2-67 307-376 (380)
231 PF02505 MCR_D: Methyl-coenzym 70.7 52 0.0011 26.1 10.5 105 115-251 12-121 (153)
232 PF11069 DUF2870: Protein of u 69.3 7.8 0.00017 28.3 3.6 35 42-76 3-38 (98)
233 cd01818 TIAM1_RBD Ubiquitin do 67.1 24 0.00053 24.5 5.5 49 190-244 4-52 (77)
234 KOG2982 Uncharacterized conser 66.8 6.7 0.00015 35.0 3.4 55 201-260 352-414 (418)
235 cd06409 PB1_MUG70 The MUG70 pr 66.4 26 0.00056 25.1 5.8 42 189-236 4-48 (86)
236 PF14732 UAE_UbL: Ubiquitin/SU 66.2 12 0.00027 26.7 4.2 52 206-261 8-67 (87)
237 PRK11840 bifunctional sulfur c 65.9 37 0.00081 30.5 8.0 67 1-77 1-67 (326)
238 PF12754 Blt1: Cell-cycle cont 65.2 2.1 4.5E-05 38.0 0.0 56 115-170 102-179 (309)
239 cd06411 PB1_p51 The PB1 domain 64.6 17 0.00037 25.5 4.5 38 197-239 7-44 (78)
240 COG2104 ThiS Sulfur transfer p 63.9 43 0.00094 22.7 7.4 66 2-75 2-67 (68)
241 cd06407 PB1_NLP A PB1 domain i 63.1 32 0.00069 24.3 5.8 40 195-239 8-48 (82)
242 smart00666 PB1 PB1 domain. Pho 62.7 35 0.00076 23.4 6.0 38 195-237 9-46 (81)
243 cd01818 TIAM1_RBD Ubiquitin do 60.3 44 0.00095 23.3 5.8 40 4-43 3-42 (77)
244 KOG4250 TANK binding protein k 58.7 25 0.00055 34.8 6.0 42 8-49 322-363 (732)
245 cd01768 RA RA (Ras-associating 58.6 51 0.0011 22.9 6.4 35 10-44 12-48 (87)
246 cd06398 PB1_Joka2 The PB1 doma 57.4 46 0.001 24.0 5.9 39 8-46 7-51 (91)
247 KOG2561 Adaptor protein NUB1, 57.0 3.5 7.6E-05 38.4 -0.0 59 14-72 53-111 (568)
248 PF01191 RNA_pol_Rpb5_C: RNA p 55.5 24 0.00052 24.5 3.9 50 208-268 16-65 (74)
249 cd01787 GRB7_RA RA (RAS-associ 55.3 48 0.001 23.6 5.5 55 3-57 5-66 (85)
250 PF00788 RA: Ras association ( 54.9 60 0.0013 22.6 6.3 41 4-44 6-52 (93)
251 smart00144 PI3K_rbd PI3-kinase 54.8 83 0.0018 23.3 7.1 64 10-73 28-105 (108)
252 TIGR03260 met_CoM_red_D methyl 53.7 44 0.00096 26.4 5.6 53 186-251 67-119 (150)
253 KOG3439 Protein conjugation fa 53.3 77 0.0017 23.8 6.4 54 183-241 28-84 (116)
254 PRK09570 rpoH DNA-directed RNA 52.4 34 0.00074 24.1 4.3 50 208-268 19-68 (79)
255 cd01777 SNX27_RA Ubiquitin dom 51.7 33 0.00071 24.6 4.2 41 2-42 3-43 (87)
256 COG5100 NPL4 Nuclear pore prot 51.5 88 0.0019 29.0 7.8 72 1-73 1-80 (571)
257 KOG2689 Predicted ubiquitin re 50.2 90 0.0019 27.4 7.4 71 184-260 209-284 (290)
258 PF14451 Ub-Mut7C: Mut7-C ubiq 49.6 90 0.0019 22.0 6.6 54 10-72 22-76 (81)
259 PF14836 Ubiquitin_3: Ubiquiti 49.2 97 0.0021 22.3 6.6 60 110-170 17-82 (88)
260 PF02017 CIDE-N: CIDE-N domain 48.4 45 0.00099 23.4 4.4 50 21-73 21-72 (78)
261 PF00276 Ribosomal_L23: Riboso 47.9 49 0.0011 23.8 4.8 40 10-49 20-60 (91)
262 PF02991 Atg8: Autophagy prote 47.3 42 0.00091 24.9 4.4 57 15-72 37-98 (104)
263 cd01764 Urm1 Urm1-like ubuitin 47.0 61 0.0013 23.4 5.2 60 15-76 23-94 (94)
264 PF14732 UAE_UbL: Ubiquitin/SU 46.9 57 0.0012 23.2 4.9 57 114-170 6-71 (87)
265 PF11834 DUF3354: Domain of un 46.5 73 0.0016 21.7 5.1 50 110-165 19-68 (69)
266 cd01615 CIDE_N CIDE_N domain, 46.4 75 0.0016 22.3 5.3 49 21-72 21-71 (78)
267 COG5100 NPL4 Nuclear pore prot 46.0 81 0.0018 29.3 6.7 70 187-261 2-77 (571)
268 cd06397 PB1_UP1 Uncharacterize 45.8 96 0.0021 21.9 5.7 57 2-59 2-63 (82)
269 KOG4572 Predicted DNA-binding 45.8 50 0.0011 33.5 5.7 62 9-70 3-68 (1424)
270 cd01611 GABARAP Ubiquitin doma 45.7 50 0.0011 24.8 4.7 58 15-73 45-107 (112)
271 PF14847 Ras_bdg_2: Ras-bindin 45.5 81 0.0018 23.4 5.7 36 3-38 3-38 (105)
272 cd06539 CIDE_N_A CIDE_N domain 45.2 71 0.0015 22.4 5.0 47 21-69 21-69 (78)
273 cd01817 RGS12_RBD Ubiquitin do 44.8 95 0.0021 21.5 5.5 44 190-239 4-47 (73)
274 smart00266 CAD Domains present 42.7 78 0.0017 21.9 4.8 48 21-71 19-68 (74)
275 cd01782 AF6_RA_repeat1 Ubiquit 42.3 1.4E+02 0.0029 22.4 6.3 37 1-37 24-62 (112)
276 PF00794 PI3K_rbd: PI3-kinase 42.0 1.1E+02 0.0023 22.4 6.0 70 2-71 18-101 (106)
277 smart00314 RA Ras association 42.0 1.2E+02 0.0026 21.2 6.6 29 10-38 15-43 (90)
278 TIGR03636 L23_arch archaeal ri 41.9 64 0.0014 22.5 4.4 34 10-43 14-47 (77)
279 KOG2689 Predicted ubiquitin re 41.9 87 0.0019 27.5 6.1 68 2-69 212-284 (290)
280 PF10407 Cytokin_check_N: Cdc1 41.8 1.1E+02 0.0024 21.1 5.5 61 11-72 3-70 (73)
281 PRK05738 rplW 50S ribosomal pr 41.5 65 0.0014 23.2 4.6 40 10-49 20-60 (92)
282 cd01777 SNX27_RA Ubiquitin dom 40.6 71 0.0015 22.9 4.5 39 187-231 3-41 (87)
283 PF02991 Atg8: Autophagy prote 39.2 1.4E+02 0.0029 22.2 6.1 66 88-154 15-81 (104)
284 PRK01777 hypothetical protein; 39.2 1.5E+02 0.0032 21.5 7.9 52 197-262 17-75 (95)
285 PF02037 SAP: SAP domain; Int 38.4 36 0.00079 19.6 2.3 20 206-231 3-22 (35)
286 PF00564 PB1: PB1 domain; Int 38.3 1.3E+02 0.0028 20.5 6.1 36 197-237 11-47 (84)
287 cd01775 CYR1_RA Ubiquitin doma 38.2 1.6E+02 0.0034 21.6 6.2 65 7-71 9-86 (97)
288 PF08825 E2_bind: E2 binding d 37.1 81 0.0018 22.4 4.4 64 201-266 1-74 (84)
289 PRK14548 50S ribosomal protein 36.7 83 0.0018 22.4 4.4 34 10-43 21-54 (84)
290 COG0089 RplW Ribosomal protein 36.4 91 0.002 22.7 4.6 38 10-47 21-59 (94)
291 PF00794 PI3K_rbd: PI3-kinase 36.1 1.7E+02 0.0037 21.3 6.9 67 184-251 15-85 (106)
292 KOG0007 Splicing factor 3a, su 35.1 17 0.00036 33.0 0.7 51 192-248 289-340 (341)
293 KOG0007 Splicing factor 3a, su 35.0 14 0.00031 33.4 0.3 38 115-152 302-339 (341)
294 PF09269 DUF1967: Domain of un 34.9 22 0.00048 24.2 1.2 39 201-261 25-63 (69)
295 cd01787 GRB7_RA RA (RAS-associ 34.2 1.7E+02 0.0038 20.8 6.9 33 187-220 4-36 (85)
296 KOG3439 Protein conjugation fa 34.0 91 0.002 23.4 4.3 39 12-50 46-84 (116)
297 PF11525 CopK: Copper resistan 33.8 23 0.0005 24.2 1.1 16 247-262 7-22 (73)
298 cd01615 CIDE_N CIDE_N domain, 33.8 98 0.0021 21.7 4.3 40 110-149 14-55 (78)
299 PF11834 DUF3354: Domain of un 32.5 81 0.0018 21.5 3.6 33 19-52 24-56 (69)
300 TIGR03595 Obg_CgtA_exten Obg f 32.3 29 0.00062 23.6 1.4 18 244-261 46-63 (69)
301 PF02192 PI3K_p85B: PI3-kinase 32.3 68 0.0015 22.5 3.3 22 13-34 2-23 (78)
302 cd06536 CIDE_N_ICAD CIDE_N dom 32.0 1.3E+02 0.0028 21.2 4.6 49 21-72 21-73 (80)
303 cd06537 CIDE_N_B CIDE_N domain 31.4 1.3E+02 0.0028 21.2 4.6 47 21-70 21-69 (81)
304 PF06234 TmoB: Toluene-4-monoo 31.3 2E+02 0.0043 20.6 6.7 60 12-71 16-83 (85)
305 smart00266 CAD Domains present 31.1 1E+02 0.0022 21.4 3.9 39 111-149 13-53 (74)
306 cd01612 APG12_C Ubiquitin-like 30.6 1.2E+02 0.0026 21.6 4.4 58 14-72 19-81 (87)
307 smart00513 SAP Putative DNA-bi 30.4 67 0.0015 18.4 2.6 20 206-231 3-22 (35)
308 PRK01777 hypothetical protein; 30.3 2.1E+02 0.0046 20.7 7.6 65 1-74 4-78 (95)
309 PTZ00380 microtubule-associate 30.1 70 0.0015 24.5 3.3 55 201-261 45-103 (121)
310 PF09469 Cobl: Cordon-bleu ubi 29.7 35 0.00077 23.8 1.5 39 216-262 3-44 (79)
311 cd01776 Rin1_RA Ubiquitin doma 29.6 1.2E+02 0.0025 21.6 4.0 42 12-53 15-61 (87)
312 cd01766 Ufm1 Urm1-like ubiquit 29.5 2E+02 0.0042 20.0 5.5 61 14-74 19-80 (82)
313 cd05992 PB1 The PB1 domain is 29.2 1.8E+02 0.004 19.5 5.3 37 197-238 10-47 (81)
314 PF02505 MCR_D: Methyl-coenzym 28.1 1.3E+02 0.0029 23.9 4.6 43 13-59 77-120 (153)
315 CHL00030 rpl23 ribosomal prote 27.9 1.5E+02 0.0032 21.5 4.6 40 9-48 18-58 (93)
316 cd06398 PB1_Joka2 The PB1 doma 27.6 2.3E+02 0.0051 20.3 5.9 37 197-238 10-52 (91)
317 cd06538 CIDE_N_FSP27 CIDE_N do 27.5 1.7E+02 0.0037 20.6 4.6 48 21-72 21-70 (79)
318 KOG2561 Adaptor protein NUB1, 27.3 53 0.0011 30.9 2.6 51 115-165 58-108 (568)
319 smart00143 PI3K_p85B PI3-kinas 27.2 82 0.0018 22.1 3.0 22 13-34 2-23 (78)
320 PRK11130 moaD molybdopterin sy 25.5 2.3E+02 0.005 19.5 7.4 56 15-75 19-80 (81)
321 cd01666 TGS_DRG_C TGS_DRG_C: 25.2 2.4E+02 0.0051 19.5 5.3 65 186-261 2-74 (75)
322 TIGR03260 met_CoM_red_D methyl 25.1 2.1E+02 0.0045 22.7 5.2 44 13-60 76-119 (150)
323 COG2012 RPB5 DNA-directed RNA 24.2 1.4E+02 0.003 20.9 3.6 50 208-268 22-71 (80)
324 KOG1364 Predicted ubiquitin re 24.1 87 0.0019 28.4 3.3 65 2-66 279-349 (356)
325 PF03931 Skp1_POZ: Skp1 family 23.5 63 0.0014 21.2 1.8 32 1-32 1-32 (62)
326 KOG1364 Predicted ubiquitin re 23.3 1.3E+02 0.0029 27.3 4.3 67 187-258 279-350 (356)
327 PF12195 End_beta_barrel: Beta 23.3 62 0.0013 22.5 1.7 23 246-268 22-44 (83)
328 PF06234 TmoB: Toluene-4-monoo 23.0 2.9E+02 0.0062 19.7 6.0 61 199-261 17-82 (85)
329 KOG0400 40S ribosomal protein 22.8 52 0.0011 25.5 1.4 43 206-256 27-69 (151)
330 smart00144 PI3K_rbd PI3-kinase 22.7 3.2E+02 0.0069 20.1 8.1 77 185-262 17-103 (108)
331 cd06404 PB1_aPKC PB1 domain is 21.7 2.4E+02 0.0051 20.1 4.4 38 8-45 7-45 (83)
332 cd06408 PB1_NoxR The PB1 domai 20.8 3.2E+02 0.007 19.5 6.6 46 186-239 3-48 (86)
333 PF08783 DWNN: DWNN domain; I 20.5 3E+02 0.0065 19.0 5.7 31 206-239 20-50 (74)
334 PF11816 DUF3337: Domain of un 20.3 1.7E+02 0.0038 26.3 4.6 59 14-72 251-327 (331)
335 PRK12280 rplW 50S ribosomal pr 20.2 2.3E+02 0.005 22.7 4.7 39 10-48 22-61 (158)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.81 E-value=3e-19 Score=133.27 Aligned_cols=92 Identities=13% Similarity=0.225 Sum_probs=85.3
Q ss_pred cccCCCCCCEEEEEEccCCCCCCCCCCCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCce
Q 044874 153 RDCELMDNAEIDVHVRPSPTATSTTSSGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGY 232 (269)
Q Consensus 153 ~~y~i~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q 232 (269)
-.|++.+-+++|+.+++++ .|+|+|++..| +++.++|++++||.+||++|++++ |+|+++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~-------------~M~I~Vk~l~G-~~~~leV~~~~TV~~lK~kI~~~~-----gip~~~Q 68 (103)
T cd01802 8 PFFNEDNMGPFHYKLPFYD-------------TMELFIETLTG-TCFELRVSPFETVISVKAKIQRLE-----GIPVAQQ 68 (103)
T ss_pred CccccCCcceeEEeeccCC-------------CEEEEEEcCCC-CEEEEEeCCCCcHHHHHHHHHHHh-----CCChHHE
Confidence 3577888999999999873 49999999998 999999999999999999999987 9999999
Q ss_pred EEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 233 FFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 233 ~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
+|+|+|+.|+|+.+|++|+|+++++|+++..
T Consensus 69 rLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~ 99 (103)
T cd01802 69 HLIWNNMELEDEYCLNDYNISEGCTLKLVLA 99 (103)
T ss_pred EEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 9999999999999999999999999999864
No 2
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.80 E-value=2.7e-19 Score=126.05 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=71.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+||+.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++++++++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=3.5e-19 Score=125.48 Aligned_cols=74 Identities=24% Similarity=0.365 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+||+ +++++++|++++||+++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++++++++..||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 8999998 4789999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.79 E-value=9.1e-19 Score=124.02 Aligned_cols=76 Identities=20% Similarity=0.401 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+||+.+|+++++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++++++++++.++..||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998765
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.78 E-value=1.6e-18 Score=129.39 Aligned_cols=76 Identities=30% Similarity=0.586 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++.+|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++.+||
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998875
No 6
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.77 E-value=2.6e-18 Score=121.96 Aligned_cols=74 Identities=27% Similarity=0.375 Sum_probs=71.0
Q ss_pred CEEEEEcCCCCE-EEEE-EcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKA-FTIE-VGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~-~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
|+|+||+.+|++ ++++ +++++||++||++|++.+|+|+++|||+|+|+.|+|+.+|++|||+++++|++++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999999875
No 7
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.76 E-value=5.9e-18 Score=119.70 Aligned_cols=76 Identities=32% Similarity=0.535 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+++++++|++.++..||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998875
No 8
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.76 E-value=7.4e-18 Score=119.19 Aligned_cols=76 Identities=28% Similarity=0.477 Sum_probs=73.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++.+|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|.|+.+|++|+++++++|+++++.+||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998765
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=5.8e-18 Score=119.23 Aligned_cols=74 Identities=14% Similarity=0.297 Sum_probs=71.6
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+||++.|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||++++++++.++..||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998765
No 10
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.75 E-value=5.7e-18 Score=118.50 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=68.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|+|+|+++.|+.+.+++++++||++||++|+++.|+|+++|||+|+|+.|+|+.+|++|||.++++|||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 11
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.75 E-value=7e-18 Score=119.92 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++..|+.+.+++++++||++||++|+++.++++++|+|+|+|+.|+|+ +|++|||+++++|+++....+|.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 89999999999999999999999999999999999999999999999999998 99999999999999999998774
No 12
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.75 E-value=5.9e-18 Score=119.21 Aligned_cols=72 Identities=18% Similarity=0.346 Sum_probs=68.7
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|+|++.+| +++.++|++++||++||++|+++. |+|+++|+|+|+|+.|+|+.+|++|||+++++|+++.+
T Consensus 1 m~i~vk~~~G-~~~~l~v~~~~tV~~lK~~i~~~~-----gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQG-RECSLQVSEKESVSTLKKLVSEHL-----NVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEc
Confidence 6899999998 899999999999999999999987 99999999999999999999999999999999999853
No 13
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.74 E-value=8.7e-18 Score=118.35 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=67.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|+. + +++.++|++++||++||++|++++ |+|+++|+|+|+|+.|+|+++|++|||++++||+++. |+
T Consensus 1 mqi~vk~--~-~~~~l~v~~~~tV~~lK~~i~~~~-----gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~-~l 71 (74)
T cd01793 1 MQLFVRA--Q-NTHTLEVTGQETVSDIKAHVAGLE-----GIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAG-RL 71 (74)
T ss_pred CEEEEEC--C-CEEEEEECCcCcHHHHHHHHHhhh-----CCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEE-ec
Confidence 6899986 3 689999999999999999999987 9999999999999999999999999999999999985 34
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 72 ~GG 74 (74)
T cd01793 72 LGG 74 (74)
T ss_pred CCC
Confidence 443
No 14
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.74 E-value=2.4e-17 Score=116.98 Aligned_cols=74 Identities=35% Similarity=0.593 Sum_probs=71.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCC--CCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGI--PVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
|+|+|++.+|+++.+++++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||++++++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999999999999999999999999999999 99999999999999999999999999999999998764
No 15
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.73 E-value=1.5e-17 Score=116.41 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=67.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
|.|+|++..| +.+.+++++++||.+||++|+++. ++|+++|+|+|.|++|+|+.+|++|||++|++||+.
T Consensus 2 ~~i~vkt~~G-k~~~~~v~~~~TV~~LK~~I~~~~-----~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLG-KKVRVKCNPDDTIGDLKKLIAAQT-----GTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCC-CEEEEEeCCCCcHHHHHHHHHHHh-----CCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999988 999999999999999999999986 899999999999999999999999999999999986
No 16
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.72 E-value=2.9e-17 Score=114.13 Aligned_cols=69 Identities=23% Similarity=0.382 Sum_probs=66.6
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
+.||..+|+++++++++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++||+++
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 368899999999999999999999999999999999999999999999999999999999999999986
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.72 E-value=2.7e-17 Score=116.74 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=67.0
Q ss_pred eeEEEEecCCCeE-EEEE-ecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKR-IPVE-VNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~-~~l~-v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|+|++.+| ++ +.++ +++++||.+||++|++++ |+|+++|+|+|+|+.|+|+.+|++|||++|++|+++..
T Consensus 1 M~I~vk~~~G-~~~~~l~~v~~~~TV~~lK~~i~~~~-----gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~ 74 (78)
T cd01797 1 MWIQVRTMDG-KETRTVDSLSRLTKVEELREKIQELF-----NVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVR 74 (78)
T ss_pred CEEEEEcCCC-CEEEEeeccCCcCcHHHHHHHHHHHh-----CCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 7899999999 64 7895 899999999999999987 99999999999999999999999999999999999853
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=2.5e-17 Score=116.01 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=66.8
Q ss_pred EEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 188 LLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 188 i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|++..| +++.+++++++||++||++|+++. |+|+++|+|+|+|+.|+|+++|++|||+++++|+++..
T Consensus 1 i~vk~~~g-~~~~l~v~~~~tV~~lK~~I~~~~-----gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~ 70 (74)
T cd01810 1 ILVRNDKG-RSSIYEVQLTQTVATLKQQVSQRE-----RVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLR 70 (74)
T ss_pred CEEECCCC-CEEEEEECCcChHHHHHHHHHHHh-----CCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 58899998 999999999999999999999987 99999999999999999999999999999999999864
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.71 E-value=8.3e-17 Score=112.57 Aligned_cols=72 Identities=31% Similarity=0.496 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|+|+||..+|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||++++++++++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999864
No 20
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.71 E-value=5.5e-17 Score=112.99 Aligned_cols=70 Identities=24% Similarity=0.483 Sum_probs=67.6
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|+||+.+|+++++++++++||+++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++++++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999864
No 21
>PTZ00044 ubiquitin; Provisional
Probab=99.70 E-value=6.2e-17 Score=114.56 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=69.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|+|++.+| +++.+++++++||++||++|+++. |+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++..
T Consensus 1 m~i~vk~~~G-~~~~l~v~~~~tv~~lK~~i~~~~-----gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~ 72 (76)
T PTZ00044 1 MQILIKTLTG-KKQSFNFEPDNTVQQVKMALQEKE-----GIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQ 72 (76)
T ss_pred CEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEE
Confidence 6899999999 899999999999999999999987 99999999999999999999999999999999999864
No 22
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.69 E-value=7.4e-17 Score=112.36 Aligned_cols=69 Identities=20% Similarity=0.401 Sum_probs=65.8
Q ss_pred EEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 188 LLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 188 i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+|++..| +++.+++++++||++||++|+++. |+|+++|+|+|+|++|+|+.+|++|||++||+||++.
T Consensus 1 i~vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTG-HTFPVEVDPDTDIKQLKEVVAKRQ-----GVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCC-CEEEEEECCCChHHHHHHHHHHHH-----CCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 57888888 999999999999999999999987 9999999999999999999999999999999999975
No 23
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.69 E-value=1.1e-16 Score=113.79 Aligned_cols=72 Identities=14% Similarity=0.349 Sum_probs=68.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
|+|+|++.+| +.+.+++++++||++||++|+++. ++|+++|+|+|+|++|+|+ +|++|||++|++|+++.+-
T Consensus 2 m~I~Vk~~~G-~~~~l~v~~~~TV~~LK~~I~~~~-----~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~ 73 (78)
T cd01804 2 MNLNIHSTTG-TRFDLSVPPDETVEGLKKRISQRL-----KVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV 73 (78)
T ss_pred eEEEEEECCC-CEEEEEECCcCHHHHHHHHHHHHh-----CCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence 8999999998 889999999999999999999986 8999999999999999999 9999999999999998743
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.69 E-value=7.5e-17 Score=112.04 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=63.6
Q ss_pred EEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 189 LVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 189 ~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
-|+..+| +++.+++++++||.+||++|++.+ |+|+++|+|+|+|++|+|+.+|.+|+|+++++|||+
T Consensus 2 ~vk~~~G-~~~~l~v~~~~TV~~lK~~I~~~~-----gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTG-KDVKLSVSSKDTVGQLKKQLQAAE-----GVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCC-CEEEEEECCcChHHHHHHHHHHHh-----CCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 4677788 999999999999999999999987 999999999999999999999999999999999997
No 25
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.69 E-value=1.1e-16 Score=114.36 Aligned_cols=74 Identities=26% Similarity=0.284 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEE--EEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTL--VFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L--~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
|+|+|+..+|+++.+++++++||++||++|++..|+|+++|+| +|+|+.|+|+.+|++||+.++++|+++++..
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~ 78 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC 78 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence 7899999999999999999999999999999999999999999 8999999999999999999999999999854
No 26
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.68 E-value=2.1e-16 Score=111.67 Aligned_cols=76 Identities=21% Similarity=0.439 Sum_probs=70.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|++.+| +++.+++++++||++||++|+++. ++|++.|+|+|+|+.|+|+.+|++|+|++|++|+++.. .
T Consensus 1 m~i~v~~~~g-~~~~~~v~~~~tv~~lK~~i~~~~-----g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~-~ 73 (76)
T cd01806 1 MLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKE-----GIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA-L 73 (76)
T ss_pred CEEEEEeCCC-CEEEEEECCCCCHHHHHHHHhHhh-----CCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE-c
Confidence 6899999998 889999999999999999999986 99999999999999999999999999999999999874 3
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~gg 76 (76)
T cd01806 74 RGG 76 (76)
T ss_pred cCC
Confidence 443
No 27
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.68 E-value=2.2e-16 Score=111.59 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=70.6
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|++.+| +.+.+++++++||++||++|+++. ++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.. +
T Consensus 1 m~i~v~~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~-~ 73 (76)
T cd01803 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR-L 73 (76)
T ss_pred CEEEEEcCCC-CEEEEEECCcCcHHHHHHHHHHHh-----CCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEE-c
Confidence 6899999998 899999999999999999999986 99999999999999999999999999999999999874 5
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~gg 76 (76)
T cd01803 74 RGG 76 (76)
T ss_pred cCC
Confidence 554
No 28
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.67 E-value=3.2e-16 Score=109.45 Aligned_cols=71 Identities=21% Similarity=0.341 Sum_probs=67.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|+|+||+.+|+ ..+++++++||++||++|++..|+++++|+|+|+|+.|+|+.+|++||++++++|+++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 589999999999999999999999999999999999999999999999999999999874
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=9.1e-18 Score=121.34 Aligned_cols=76 Identities=24% Similarity=0.474 Sum_probs=70.5
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+++|+++.| +++.+++++++||..+|++|+.++ |+|+++|+|+|+|+.|+|+.||++|||+..|||+++. ++
T Consensus 1 ~~~~~~~~~G-KT~~le~EpS~ti~~vKA~i~~~~-----Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~-rL 73 (128)
T KOG0003|consen 1 MQIFVKTLTG-KTITLEVEPSDTIDNVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL-RL 73 (128)
T ss_pred CcEEEEEeeC-ceEEEEecccchHHHHHHHhcccc-----CCCHHHHHHHhcccccccCCcccccCccchhhhhhhH-HH
Confidence 4678999999 999999999999999999999998 9999999999999999999999999999999999987 34
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~GG 76 (128)
T KOG0003|consen 74 RGG 76 (128)
T ss_pred hcC
Confidence 444
No 30
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.7e-17 Score=104.04 Aligned_cols=70 Identities=31% Similarity=0.564 Sum_probs=68.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|.|.|++++|+.+.++++|+++|+.+|++|+++.||||.+|||+|.|+++.|+.+-++|++.-|+++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999974
No 31
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.66 E-value=4.1e-16 Score=110.58 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=67.4
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCC--CCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHL--PQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~--p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+|+|++..| +++.+++++++||.+||++|++.. ++ |+++|+|+|+|+.|+|+.+|++|||++||+|+++.
T Consensus 1 m~i~vk~~~g-~~~~l~v~~~~TV~~lK~~i~~~~-----~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~ 73 (77)
T cd01805 1 MKITFKTLKQ-QTFPIEVDPDDTVAELKEKIEEEK-----GCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMV 73 (77)
T ss_pred CEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHhh-----CCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEE
Confidence 6899999998 999999999999999999999986 88 99999999999999999999999999999999874
No 32
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=7.9e-18 Score=121.65 Aligned_cols=77 Identities=31% Similarity=0.510 Sum_probs=75.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+++++++.|++.+++++|++||..+|.+|..+.|+||+.|+|+|+|++|+|..|+++||++..+|+++++++.||+
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999986
No 33
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.66 E-value=2.9e-16 Score=112.21 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=69.6
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEE--EecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFF--IYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l--~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|+|++.+| +++.+++++++||.+||++|++.. ++|+++|+| +|+|+.|+|+.+|++|||++|++|+++..
T Consensus 3 ~~i~Vk~~~G-~~~~~~v~~~~TV~~lK~~I~~~~-----~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGG-NEFLVSLRDSMTVSELKQQIAQKI-----GVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCC-CEEEEEcCCCCcHHHHHHHHHHHh-----CCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 8899999998 999999999999999999999986 899999999 89999999999999999999999999865
Q ss_pred cc
Q 044874 264 SV 265 (269)
Q Consensus 264 ~~ 265 (269)
..
T Consensus 77 ~~ 78 (80)
T cd01792 77 NC 78 (80)
T ss_pred cc
Confidence 44
No 34
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.65 E-value=6.4e-16 Score=107.24 Aligned_cols=68 Identities=38% Similarity=0.618 Sum_probs=65.5
Q ss_pred EcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 6 EPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 6 k~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+.+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|||.++++|++.+++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 56889999999999999999999999999999999999999999999999999999999999999875
No 35
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.2e-16 Score=123.92 Aligned_cols=77 Identities=31% Similarity=0.529 Sum_probs=75.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+.+.+++.++++.+++||..+|++|++.+|||+++|||+|.|++|+|..+|+||+|+..++++++++..||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999886
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.64 E-value=1.2e-15 Score=106.64 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=67.6
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+|+|+...| +++.+++++++||.+||++|++.. |+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus 1 i~i~vk~~~g-~~~~~~v~~~~tv~~lK~~i~~~~-----gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDS-QTHTFTVEEEITVLDLKEKIAEEV-----GIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 6899999998 899999999999999999999986 9999999999999999999999999999999999974
No 37
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.64 E-value=9.7e-16 Score=106.92 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=64.4
Q ss_pred EEEEcC-CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCC-CccccCCCCCCCEEEEE
Q 044874 3 VIFEPQ-RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDD-RDVEHCEILQNSRIQLL 70 (269)
Q Consensus 3 i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~i~~~~~i~l~ 70 (269)
|+|++. +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++++++++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578998 999999999999999999999999999999999999999999987 68999999999999874
No 38
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=1.2e-15 Score=107.99 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=67.1
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 8 QRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 8 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
++|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..||.
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999998764
No 39
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.64 E-value=7.4e-16 Score=107.51 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=62.4
Q ss_pred EEEEec-CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC-CccccccCCCCCEEEE
Q 044874 188 LLVLTQ-CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD-RSFRWHHVGQGDTIEI 260 (269)
Q Consensus 188 i~V~~~-~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l 260 (269)
|+|++. .| +++.+++++++||++||++|++++ |+|+++|+|+|+|+.|+|+ .+|++|||++||+|+|
T Consensus 1 l~v~~~~~g-~~~~l~v~~~~TV~~lK~~I~~~~-----gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSE-TTFSLDVDPDLELENFKALCEAES-----GIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCC-CEEEEEECCcCCHHHHHHHHHHHh-----CCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence 467888 66 899999999999999999999987 9999999999999999998 6899999999999997
No 40
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.64 E-value=1e-15 Score=106.91 Aligned_cols=70 Identities=19% Similarity=0.367 Sum_probs=64.9
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
++|+|++.+| + ..+++++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus 1 ~~i~vk~~~g-~-~~l~v~~~~TV~~lK~~I~~~~-----~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKD-K-EEIEIAEDASVKDFKEAVSKKF-----KANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVI 70 (71)
T ss_pred CEEEEEcCCC-C-EEEEECCCChHHHHHHHHHHHh-----CCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEE
Confidence 4689999988 5 4899999999999999999986 8999999999999999999999999999999999974
No 41
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.3e-16 Score=100.17 Aligned_cols=70 Identities=20% Similarity=0.423 Sum_probs=66.9
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
|.|.|+++.| +.+.++++++|+|+.+|+.+++++ |+|+.+|+|+|.|+.|.||.|-++|++.-||++|++
T Consensus 1 m~iKvktLt~-KeIeidIep~DkverIKErvEEke-----GIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKE-----GIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeecc-ceEEEeeCcchHHHHHHHHhhhhc-----CCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 4678899998 999999999999999999999998 999999999999999999999999999999999985
No 42
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.61 E-value=1.9e-15 Score=106.43 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=63.6
Q ss_pred CEEEEEcCCCCE--EEEEEcCCCCHHHHHHHHHHHhC--CCCCcEEEEEcCEEcCCCCccccCC--CCCCCEEEEEE
Q 044874 1 MDVIFEPQRGKA--FTIEVGFFDTVLEIKEKIEKYQG--IPVPKQTLVFNGQVLQDDRDVEHCE--ILQNSRIQLLV 71 (269)
Q Consensus 1 M~i~vk~~~g~~--~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~G~~L~d~~tL~~~~--i~~~~~i~l~~ 71 (269)
|.|+||+++++. +.+++++++||.+||++|++..+ .++++|||+|+|+.|+|+.+|++|. +.++.+|||+.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 579999999998 44555899999999999999874 5579999999999999999999996 99999999985
No 43
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.4e-16 Score=121.46 Aligned_cols=76 Identities=24% Similarity=0.475 Sum_probs=70.8
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|+++.+ +++.+++++++||+.+|++|++.+ +||+++|+|||.|+.|+|+++|+||+|+..+||+++.. +
T Consensus 1 m~ifVk~l~~-kti~~eve~~~ti~~~Kakiq~~e-----gIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~-l 73 (156)
T KOG0004|consen 1 MQIFVKTLTG-KTITLEVEANDTIDNVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR-L 73 (156)
T ss_pred Cccchhhccc-cceeeeecccccHHHHHHhhhccc-----CCCchhhhhhhhhcccccCCccccccccccceEEEEEE-e
Confidence 6799999998 999999999999999999999998 99999999999999999999999999999999999863 4
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~Gg 76 (156)
T KOG0004|consen 74 RGG 76 (156)
T ss_pred cCC
Confidence 444
No 44
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.61 E-value=1.9e-15 Score=106.39 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=63.0
Q ss_pred eeEEEEecCCCeE--EEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCcccccc--CCCCCEEEEe
Q 044874 186 LKLLVLTQCGNKR--IPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHH--VGQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~--~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~--i~~~~~i~l~ 261 (269)
+.|.|+++++ +. +.+++++++||.+||++|++..+ ...|+++|+|||+||+|+|+.||++|+ +++|.||||+
T Consensus 2 i~l~IK~~~~-~~~~~~ve~~~~~TV~~lK~~i~~~~~---~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV 77 (79)
T cd01790 2 VTLLIKSPNQ-KYEDQTVSCFLNWTVGELKTHLSRVYP---SKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLV 77 (79)
T ss_pred eEEEEECCCC-CeEEEEEecCCcChHHHHHHHHHHhcC---CCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEE
Confidence 6889999988 66 66777999999999999998631 135679999999999999999999997 9999999997
No 45
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.61 E-value=4.3e-15 Score=103.04 Aligned_cols=66 Identities=26% Similarity=0.471 Sum_probs=62.2
Q ss_pred EecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 191 LTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 191 ~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
++.+| +.+.++|++++||.+||++|++.. ++|++.|+|+|+|+.|+|+.+|.+|||++|++|+++.
T Consensus 1 k~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~ 66 (69)
T PF00240_consen 1 KTLSG-KTFTLEVDPDDTVADLKQKIAEET-----GIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVI 66 (69)
T ss_dssp EETTS-EEEEEEEETTSBHHHHHHHHHHHH-----TSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEE
T ss_pred CCCCC-cEEEEEECCCCCHHHhhhhccccc-----ccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEE
Confidence 45677 899999999999999999999987 9999999999999999999999999999999999874
No 46
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.60 E-value=7.4e-15 Score=106.55 Aligned_cols=76 Identities=13% Similarity=0.303 Sum_probs=73.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++.+|+.+.++|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+++|+++++++|+++++..||
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999876
No 47
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.60 E-value=4.8e-15 Score=104.10 Aligned_cols=70 Identities=24% Similarity=0.382 Sum_probs=65.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE---cCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF---NGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|.|.|+. +|+++.+++++++||++||++|++.+|+|+++|+|+| .|+.|.|+.+|++|+|.+++.|+|+.
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 6788884 7899999999999999999999999999999999996 89999999999999999999999874
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.59 E-value=5.4e-15 Score=103.09 Aligned_cols=70 Identities=19% Similarity=0.345 Sum_probs=66.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|+|+||.. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++||+.+|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999986 99999999999999999999999999999999999999999999999999999999999874
No 49
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=6.6e-15 Score=104.14 Aligned_cols=65 Identities=18% Similarity=0.304 Sum_probs=61.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
+| +++.+++++++||++||++|+... |+|+++|+|+|+|+.|+|+++|++|+|++|++|+|+...
T Consensus 6 ~g-~~~~l~v~~~~TV~~lK~~i~~~~-----gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~ 70 (76)
T cd01800 6 NG-QMLNFTLQLSDPVSVLKVKIHEET-----GMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKE 70 (76)
T ss_pred CC-eEEEEEECCCCcHHHHHHHHHHHH-----CCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEec
Confidence 56 899999999999999999999986 999999999999999999999999999999999998643
No 50
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.56 E-value=1.7e-14 Score=100.61 Aligned_cols=69 Identities=16% Similarity=0.313 Sum_probs=64.7
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
++|.|+.. | +.+.+++++++||++||++|+++. |+|++.|+|+|+|+.|+|+.+|++|||++|++|+++
T Consensus 1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i~~~~-----gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-G-ESHDLSISSQATFGDLKKMLAPVT-----GVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHHhh-----CCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 47888875 6 899999999999999999999986 999999999999999999999999999999999987
No 51
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.55 E-value=2.3e-14 Score=100.64 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=63.6
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe---cCeeecCCCccccccCCCCCEEEEe
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY---KQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~---~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
|.|.|+. .| +++.+++++++||++||++|+++. ++|+++|+|+| +|+.|+|+.+|++|+|++|+.|+|+
T Consensus 1 ~~i~vk~-~g-~~~~v~v~~~~Tv~~lK~~i~~~t-----gvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GG-QEYSVTTLSEDTVLDLKQFIKTLT-----GVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CC-EEEEEEECCCCCHHHHHHHHHHHH-----CCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4577774 56 899999999999999999999986 99999999996 9999999999999999999999987
No 52
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.53 E-value=9.8e-15 Score=101.37 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=49.4
Q ss_pred CCCcHHHHHHHHHHhhhccCCCC-CCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 205 ASDNVSELRKELQKLHQRYHFHL-PQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 205 ~~~tV~~lK~~i~~~~~~~~~~~-p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
.++||.+||++|+++. ..++ |+++|+|||+|++|+|++||++|||++|++||++++
T Consensus 19 ~~~TV~~LK~kI~~~~---~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQL---PDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhh---ccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEeC
Confidence 4789999999999983 0156 499999999999999999999999999999999863
No 53
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.52 E-value=1.1e-13 Score=100.35 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=71.5
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+..|+|+|+...| +.+.++|.+++++..||++++++. |+|+++|+|+|+|+.|+++.|+++|++++||+|+++
T Consensus 8 ~~~~i~I~v~~~~g-~~~~~~v~~~~~l~~l~~~y~~~~-----gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 8 ISEHINLKVKGQDG-NEVFFKIKRSTPLKKLMEAYCQRQ-----GLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCCeEEEEEECCCC-CEEEEEEcCCCHHHHHHHHHHHHh-----CCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 45679999999988 899999999999999999999997 999999999999999999999999999999999998
Q ss_pred cC
Q 044874 262 NG 263 (269)
Q Consensus 262 ~~ 263 (269)
-.
T Consensus 82 l~ 83 (87)
T cd01763 82 LE 83 (87)
T ss_pred Ee
Confidence 53
No 54
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.51 E-value=7e-14 Score=95.10 Aligned_cols=64 Identities=39% Similarity=0.620 Sum_probs=61.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNS 65 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~ 65 (269)
|+|+|+..+ +.+.+++++++||++||++|+..+|+|+++|+|+|+|+.|.|+.+|++||+.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999999875
No 55
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.49 E-value=1e-13 Score=125.57 Aligned_cols=75 Identities=33% Similarity=0.577 Sum_probs=72.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhC---CCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQG---IPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+||+++|+++.|+|++++||.+||++|+...| +++++|||+|+|+.|+|+.+|++|+|+++++|++++....
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k 78 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK 78 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999988753
No 56
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2e-13 Score=123.62 Aligned_cols=73 Identities=16% Similarity=0.353 Sum_probs=68.5
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCC---CCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFH---LPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~---~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+|+||+..| +++.++|++++||.+||++|++.. | +|+++|+|+|+|++|+|+++|++|+|+++++|+++.
T Consensus 1 MkItVKtl~g-~~~~IeV~~~~TV~dLK~kI~~~~-----g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQ-QKFKIDMEPDETVKELKEKIEAEQ-----GKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCC-CEEEEEeCCcChHHHHHHHHHHhh-----CCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEe
Confidence 6899999998 999999999999999999999975 6 999999999999999999999999999999999885
Q ss_pred Cc
Q 044874 263 GS 264 (269)
Q Consensus 263 ~~ 264 (269)
+.
T Consensus 75 ~k 76 (378)
T TIGR00601 75 SK 76 (378)
T ss_pred cc
Confidence 43
No 57
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.43 E-value=4.6e-13 Score=94.15 Aligned_cols=69 Identities=23% Similarity=0.195 Sum_probs=61.2
Q ss_pred EEEEE--cCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcC-CCCccccCCCC-CCCEEEEEE
Q 044874 2 DVIFE--PQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQ-DDRDVEHCEIL-QNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-d~~tL~~~~i~-~~~~i~l~~ 71 (269)
++.|. ...|.++++++++++||++||++|+.++|+|++.|+| |+|+.|. |+.+|++||++ +|+++++.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34554 4568899999999999999999999999999999999 9999885 77999999999 889999865
No 58
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.43 E-value=4.8e-13 Score=94.05 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=56.8
Q ss_pred cCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeec-CCCccccccCC-CCCEEEEe
Q 044874 193 QCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMD-DDRSFRWHHVG-QGDTIEIF 261 (269)
Q Consensus 193 ~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~-d~~tL~~~~i~-~~~~i~l~ 261 (269)
..| .++.+++++++||++||++|+++. |+|+++|+| |.|+.|. |+++|++|||+ +|++++|+
T Consensus 10 ~~~-~t~~l~v~~~~TV~~lK~kI~~~~-----gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~ 73 (75)
T cd01799 10 SHT-VTIWLTVRPDMTVAQLKDKVFLDY-----GFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY 73 (75)
T ss_pred cCC-CeEEEEECCCCcHHHHHHHHHHHH-----CcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence 345 899999999999999999999987 999999999 9999996 66899999999 88999986
No 59
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.41 E-value=4e-13 Score=93.35 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHh--CCC-CCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 19 FFDTVLEIKEKIEKYQ--GIP-VPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 19 ~~~tV~~lK~~I~~~~--gi~-~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
.++||.+||++|+++. +++ +++|||+|+|+.|+|+.+|++|||+++++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4789999999999995 574 8999999999999999999999999999999975
No 60
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.36 E-value=2.8e-12 Score=87.12 Aligned_cols=64 Identities=34% Similarity=0.535 Sum_probs=59.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGD 256 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~ 256 (269)
|+|+|+..+ ..+.+++++++||++||++|+.+. ++|++.|+|+|+|+.|+|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~-----~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD--GTITLEVKPSDTVSELKEKIAELT-----GIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC--ceEEEEECCCCcHHHHHHHHHHHH-----CCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 578898876 588999999999999999999975 9999999999999999999999999999986
No 61
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.30 E-value=6.1e-12 Score=109.12 Aligned_cols=75 Identities=32% Similarity=0.572 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhC--CCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQG--IPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+||++.+.+|++++.|++||.++|.+|+...| +|...|+|+|+|+.|.|+.++.+|+|.++..|.++++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k 77 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK 77 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998874
No 62
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.30 E-value=1.3e-11 Score=84.96 Aligned_cols=67 Identities=34% Similarity=0.609 Sum_probs=63.6
Q ss_pred EEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 5 FEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 5 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|+..+|+.+.++++++.||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999999864
No 63
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.30 E-value=4e-12 Score=115.70 Aligned_cols=74 Identities=23% Similarity=0.468 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
++|+||+.++ .+.+.|..+.||.+||++|...+++++++++|+|+||.|+|+.+|..|||++|.||||+++...
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~ 89 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQP 89 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCC
Confidence 4799999888 7999999999999999999999999999999999999999999999999999999999998763
No 64
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.28 E-value=4.9e-12 Score=93.80 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=63.0
Q ss_pred EEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHH-----hCCC--CCcEEEEEcCEEcCCCCccccCC------CCCCCEE
Q 044874 2 DVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKY-----QGIP--VPKQTLVFNGQVLQDDRDVEHCE------ILQNSRI 67 (269)
Q Consensus 2 ~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~-----~gi~--~~~q~L~~~G~~L~d~~tL~~~~------i~~~~~i 67 (269)
.|.+|..+|. .=+..+++++||++||++|++. +++| +++|+|+|+|+.|+|+.||++|+ +....|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 4677777774 4466788999999999999944 4555 99999999999999999999999 7788999
Q ss_pred EEEEecCC
Q 044874 68 QLLVASDN 75 (269)
Q Consensus 68 ~l~~~~~~ 75 (269)
||++++..
T Consensus 86 Hvvlr~~~ 93 (113)
T cd01814 86 HVVVQPPL 93 (113)
T ss_pred EEEecCCC
Confidence 99998764
No 65
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.27 E-value=2.2e-11 Score=84.99 Aligned_cols=71 Identities=25% Similarity=0.392 Sum_probs=66.1
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC-CcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV-PKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|+|+|+..+|+.+.+.|.+++++..|++.++++.++|+ +.++|+|+|+.|.++.|++++|++++++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 78999999999999999999999999999999999999 999999999999999999999999999999864
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.26 E-value=2e-11 Score=87.91 Aligned_cols=63 Identities=21% Similarity=0.204 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcC-CCCccccCCCCCCCEEEEEEecC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQ-DDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
...++|++++||.+||.+|.+.++++|.+|+|+|+|+.|. |..||++|||..+++|+|.+..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 4678899999999999999999999999999999999995 57899999999999999998654
No 67
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.24 E-value=1.3e-11 Score=107.12 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=67.9
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+|+||++.+ .+|++++.+.+||.++|++|+...+ -.+|+++|+|||+|++|.|+.|+.+|+|++++.|.|+.
T Consensus 1 m~lt~KtL~q-~~F~iev~Pe~tV~evK~kIet~~g---~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMl 73 (340)
T KOG0011|consen 1 MKLTVKTLKQ-QTFTIEVKPEDTVVEVKKKIETEKG---PDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVML 73 (340)
T ss_pred CeeEeeeccC-ceeEeecCcchhHHHHHHHHHhccC---CCCchhhheeeecceeccCCcchhhhccccCceEEEEE
Confidence 6899999998 9999999999999999999999751 13999999999999999999999999999999999984
No 68
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.23 E-value=3.8e-11 Score=89.11 Aligned_cols=63 Identities=27% Similarity=0.390 Sum_probs=54.5
Q ss_pred eeecCCcchHHHHHHhhh-----hhcCCC--CcceEEEeCCeeeccCCcccccC------CCCCCEEEEEEccCCC
Q 044874 110 PLDMDVNDTVLRLKEKIH-----EMESIP--VNRLLVQSSGAELQDHRSLRDCE------LMDNAEIDVHVRPSPT 172 (269)
Q Consensus 110 ~~~v~~~~TV~~lK~~I~-----~~~gip--~~~q~L~~~g~~L~d~~~L~~y~------i~~~~~i~l~~~~~~~ 172 (269)
........||++||++|+ .++|+| +++|+|+|+|+.|+|++||++|+ +....|+||+++++..
T Consensus 19 p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~~~ 94 (113)
T cd01814 19 PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPPLA 94 (113)
T ss_pred ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCCCC
Confidence 344557899999999999 555667 99999999999999999999999 7778999999998743
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.22 E-value=1.9e-11 Score=111.30 Aligned_cols=75 Identities=21% Similarity=0.383 Sum_probs=68.7
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
..++|.||+.+. ...+.|....||.+||+.|..+ ++.|+++++|||.||+|+|+.||..|||++|.||||+.+
T Consensus 14 ~~irV~Vkt~~d--k~~~~V~~~ssV~qlKE~I~~~-----f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 14 SLIRVTVKTPKD--KYEVNVASDSSVLQLKELIAQR-----FGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred ceeEEEEecCCc--ceeEecccchHHHHHHHHHHHh-----cCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEec
Confidence 468999998775 7788999999999999999997 499999999999999999999999999999999999976
Q ss_pred cc
Q 044874 264 SV 265 (269)
Q Consensus 264 ~~ 265 (269)
.-
T Consensus 87 ~~ 88 (493)
T KOG0010|consen 87 SQ 88 (493)
T ss_pred cC
Confidence 54
No 70
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.22 E-value=5.3e-11 Score=81.96 Aligned_cols=67 Identities=25% Similarity=0.449 Sum_probs=61.0
Q ss_pred EEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 190 VLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 190 V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+..+| +.+.++++++.||.+||++|+... ++|++.|+|+|+|+.|+|+.+|.+|++.++++|++..
T Consensus 2 v~~~~~-~~~~~~~~~~~ti~~lK~~i~~~~-----~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTG-KTFELEVSPDDTVAELKAKIAAKE-----GVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCC-CEEEEEECCCChHHHHHHHHHHHH-----CcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 455566 888999999999999999999975 8999999999999999999999999999999999863
No 71
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.19 E-value=1.3e-10 Score=81.13 Aligned_cols=70 Identities=23% Similarity=0.377 Sum_probs=64.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC-CceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ-DGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~-~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
|+|.|+..+| +.+.+.|.+++++..|++..+++. ++|. +.++|+|.|+.|+++.|+++||+++||+|++.
T Consensus 1 I~i~v~~~~~-~~~~~~v~~~~~~~~l~~~~~~~~-----~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDG-KEIKFKVKPTTTVSKLIEKYCEKK-----GIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTS-EEEEEEEETTSCCHHHHHHHHHHH-----TTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHhh-----CCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 5788998888 899999999999999999999986 9999 89999999999999999999999999999885
No 72
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.15 E-value=1e-10 Score=84.29 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=55.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC-CccccccCCCCCEEEEec
Q 044874 198 RIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD-RSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 198 ~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~ 262 (269)
...++|++++||.+||.+|++.. ++|++.|+|+|+|+.|.|+ +||.+|||..+++|.|.-
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f-----~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Lli 76 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAF-----SVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKA 76 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHh-----cCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEe
Confidence 56788999999999999999985 9999999999999999876 699999999999998863
No 73
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.04 E-value=2.3e-09 Score=77.08 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=59.0
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE-ecCe-----ee-cCCCccccccCCCCCEEE
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI-YKQN-----VM-DDDRSFRWHHVGQGDTIE 259 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~-~~g~-----~L-~d~~tL~~~~i~~~~~i~ 259 (269)
.|+|............++++.||.+||++++..- |+|++.|+|. |.|+ .| +|+.+|.+||+++|.+||
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~-----G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~Ih 77 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVV-----GTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIH 77 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHH-----CCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEE
Confidence 4455443222556667999999999999999975 9999999995 8888 56 667899999999999999
Q ss_pred EecCc
Q 044874 260 IFNGS 264 (269)
Q Consensus 260 l~~~~ 264 (269)
|.+.+
T Consensus 78 VvD~~ 82 (84)
T cd01789 78 VIDVS 82 (84)
T ss_pred EEeCC
Confidence 99754
No 74
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.98 E-value=3.1e-09 Score=76.44 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=57.3
Q ss_pred EEEEEcCC-CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE-EcCE-----Ec-CCCCccccCCCCCCCEEEEEE
Q 044874 2 DVIFEPQR-GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV-FNGQ-----VL-QDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~G~-----~L-~d~~tL~~~~i~~~~~i~l~~ 71 (269)
.|+|.... .......++++.||.+||++++..+|+||..|+|. |.|+ .| +|+.+|++|++++|.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45665533 33344459999999999999999999999999995 7776 45 678899999999999999874
No 75
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.95 E-value=9.1e-09 Score=70.99 Aligned_cols=72 Identities=33% Similarity=0.561 Sum_probs=68.4
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
+++++..|+++.+++.+..+|..+|.+|+...+++++.|++.+.|+.|+|+.++.+|+|..++++++..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 567788999999999999999999999999999999999999999999999999999999999999998765
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.88 E-value=8.8e-09 Score=76.22 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=65.7
Q ss_pred CEEEEEcCC-CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCC-------CCCCEEEEEEe
Q 044874 1 MDVIFEPQR-GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEI-------LQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~-g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i-------~~~~~i~l~~~ 72 (269)
|-+|+.... ..++.+++.++.||.+||++|+.....||..|+|+-.+..|+|++||++||+ +..+++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 556666543 3467889999999999999999999999999999977788999999999999 77999999999
Q ss_pred cCCC
Q 044874 73 SDNK 76 (269)
Q Consensus 73 ~~~g 76 (269)
...|
T Consensus 81 ~~d~ 84 (119)
T cd01788 81 SSDD 84 (119)
T ss_pred cCCC
Confidence 7544
No 77
>PLN02560 enoyl-CoA reductase
Probab=98.88 E-value=7e-09 Score=91.98 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=62.0
Q ss_pred CEEEEEcCCCCEE---EEEEcCCCCHHHHHHHHHHHhCC-CCCcEEEEEc---C----EEcCCCCccccCCCCCCCEEEE
Q 044874 1 MDVIFEPQRGKAF---TIEVGFFDTVLEIKEKIEKYQGI-PVPKQTLVFN---G----QVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 1 M~i~vk~~~g~~~---~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~~~---G----~~L~d~~tL~~~~i~~~~~i~l 69 (269)
|+|+|+..+|+.+ ++++++++||++||++|+++.++ ++++|||.+. | ..|+|+.+|+++|+++++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999889987 79999999999999999999986 8999999983 3 3789999999999999998664
No 78
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.84 E-value=2.1e-08 Score=69.14 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=64.0
Q ss_pred EEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 188 LLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 188 i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+++.+..| +++.+++.+.++|..+|.+|+..+ ++|.+.|++.|.|+.|+|+.+|.+|+|..+++++++.
T Consensus 2 ~~~~~~~g-k~~~~~~~~~~~i~~~k~~i~~~~-----~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~ 70 (75)
T KOG0001|consen 2 IFVKTLDG-KTITLEVSPSDTIEVVKAKIRDKE-----GIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVL 70 (75)
T ss_pred EEEEecCC-CEEEEEecCCCHHHHHHHHHHhhc-----CCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEE
Confidence 46667777 999999999999999999999987 9999999999999999999999999999999999874
No 79
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.8e-09 Score=101.26 Aligned_cols=73 Identities=29% Similarity=0.466 Sum_probs=69.8
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
.|+||+++.++.++.+...+||.+||+.|.++.+|+...|||+|.|++|.|++++.+|+| +|.+|||+-+++.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 478999999999999999999999999999999999999999999999999999999999 9999999998653
No 80
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.79 E-value=2.7e-08 Score=72.06 Aligned_cols=71 Identities=24% Similarity=0.331 Sum_probs=56.9
Q ss_pred EEEEEcCCC--CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc----CE---Ec-CCCCccccCCCCCCCEEEEEE
Q 044874 2 DVIFEPQRG--KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN----GQ---VL-QDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~----G~---~L-~d~~tL~~~~i~~~~~i~l~~ 71 (269)
+|+|..... ......++++.||.+||.+|+..+|+|++.|+|.+. +. .+ +|+.+|.+||+.+|.+|++.=
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 566665543 488899999999999999999999999999999886 21 24 578999999999999999874
Q ss_pred e
Q 044874 72 A 72 (269)
Q Consensus 72 ~ 72 (269)
.
T Consensus 83 ~ 83 (87)
T PF14560_consen 83 T 83 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 81
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.77 E-value=4.9e-08 Score=70.68 Aligned_cols=74 Identities=23% Similarity=0.361 Sum_probs=56.2
Q ss_pred eEEEEecCC-CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec----C---eee-cCCCccccccCCCCCE
Q 044874 187 KLLVLTQCG-NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK----Q---NVM-DDDRSFRWHHVGQGDT 257 (269)
Q Consensus 187 ~i~V~~~~g-~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~----g---~~L-~d~~tL~~~~i~~~~~ 257 (269)
+|+|..... .......++.+.||.+||.+|+..- |+|++.|+|.+. + ..| +|+.+|.+||+++|.+
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-----Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~ 77 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-----GIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMR 77 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-----TS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-----CCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCE
Confidence 455554332 1478889999999999999999985 999999999976 1 123 5678999999999999
Q ss_pred EEEecCcc
Q 044874 258 IEIFNGSV 265 (269)
Q Consensus 258 i~l~~~~~ 265 (269)
|+|...+-
T Consensus 78 i~V~D~~p 85 (87)
T PF14560_consen 78 IHVVDTNP 85 (87)
T ss_dssp EEEEE-T-
T ss_pred EEEEeCCC
Confidence 99987543
No 82
>PLN02560 enoyl-CoA reductase
Probab=98.76 E-value=2.4e-08 Score=88.60 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=60.4
Q ss_pred eeEEEEecCCCeEE---EEEecCCCcHHHHHHHHHHhhhccCCCC-CCCceEEEec-------CeeecCCCccccccCCC
Q 044874 186 LKLLVLTQCGNKRI---PVEVNASDNVSELRKELQKLHQRYHFHL-PQDGYFFIYK-------QNVMDDDRSFRWHHVGQ 254 (269)
Q Consensus 186 ~~i~V~~~~g~~~~---~l~v~~~~tV~~lK~~i~~~~~~~~~~~-p~~~q~l~~~-------g~~L~d~~tL~~~~i~~ 254 (269)
|+|.|+..+| +.+ .++++++.||++||++|+++. +. ++++|+|++. |+.|+|+++|.+||+++
T Consensus 1 M~I~Vk~~~G-k~i~~~~lev~~~aTV~dLK~~Isk~~-----~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~ 74 (308)
T PLN02560 1 MKVTVVSRSG-REIIKGGLEVPDSATVADLKKAIHKRK-----KKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGD 74 (308)
T ss_pred CEEEEEcCCC-CeecceeEEcCCCCcHHHHHHHHHHHc-----CCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCC
Confidence 5688887777 665 799999999999999999986 54 8999999983 34899999999999999
Q ss_pred CCEEEEe
Q 044874 255 GDTIEIF 261 (269)
Q Consensus 255 ~~~i~l~ 261 (269)
|++|++=
T Consensus 75 gstLy~k 81 (308)
T PLN02560 75 GGTVVFK 81 (308)
T ss_pred CceEEEE
Confidence 9999874
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.65 E-value=1.8e-07 Score=70.51 Aligned_cols=73 Identities=21% Similarity=0.368 Sum_probs=55.0
Q ss_pred EEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHh-------CCCCCcEEEEEcCEEcCCCCccccCCCCCCC------EE
Q 044874 2 DVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQ-------GIPVPKQTLVFNGQVLQDDRDVEHCEILQNS------RI 67 (269)
Q Consensus 2 ~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~-------gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~------~i 67 (269)
.|+++..+|. +-.+.+++++||++||+.|...- -..++..||+|.|+.|+|+.+|+++.+..+. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 4666777899 88999999999999999999753 1345678999999999999999999988655 67
Q ss_pred EEEEecC
Q 044874 68 QLLVASD 74 (269)
Q Consensus 68 ~l~~~~~ 74 (269)
||+++..
T Consensus 84 Hlvvrp~ 90 (111)
T PF13881_consen 84 HLVVRPN 90 (111)
T ss_dssp EEEE-SS
T ss_pred EEEecCC
Confidence 7777655
No 84
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=6e-08 Score=95.21 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=67.6
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
..+.||+++. ++.++.|...+||.++|.+|.+.- +|+.+.|||||.|++|.|++++.+|+| +|-+|||+.+.-
T Consensus 3 ~~v~vktld~-r~~t~~ig~q~ti~~~~d~~r~~~-----ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 3 PNVLVKTLDS-RTRTFIIGAQMTIKEFKDHIRASV-----NIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred cceeeeeccc-ceeEEEechHHHHHHHHHHHHHhc-----ccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 4589999997 999999999999999999999975 999999999999999999999999999 999999997543
No 85
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.61 E-value=1.6e-07 Score=66.38 Aligned_cols=68 Identities=18% Similarity=0.221 Sum_probs=53.5
Q ss_pred EEEEEcCC-CCEEEEEE-cCCCCHHHHHHHHHHHhC-CCCCcEEEE--EcCEEcCCCCccccCCCCCCCEEEE
Q 044874 2 DVIFEPQR-GKAFTIEV-GFFDTVLEIKEKIEKYQG-IPVPKQTLV--FNGQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 2 ~i~vk~~~-g~~~~l~v-~~~~tV~~lK~~I~~~~g-i~~~~q~L~--~~G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
+|.++... .....+++ +++.||.+||..|+...+ +++++|||. +.|+.|.|+.+|.+||+.++++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45555544 22222444 488999999999999976 689999996 6799999999999999999998876
No 86
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.61 E-value=1.4e-07 Score=66.74 Aligned_cols=53 Identities=21% Similarity=0.266 Sum_probs=46.6
Q ss_pred cCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecCCCccccccCCCCCEEEE
Q 044874 204 NASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 204 ~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
.++.||.+||+.|.... -.+++++|+|. +.|+.|.|+.+|.+|||++|++||+
T Consensus 20 ~~~aTV~dlk~~i~~~~----~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSS----PQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHc----CCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 57789999999999864 14688998885 8999999999999999999999987
No 87
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.59 E-value=6e-07 Score=67.71 Aligned_cols=77 Identities=14% Similarity=0.272 Sum_probs=53.8
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCC--CCceEEEecCeeecCCCccccccCCCCC------E
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLP--QDGYFFIYKQNVMDDDRSFRWHHVGQGD------T 257 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p--~~~q~l~~~g~~L~d~~tL~~~~i~~~~------~ 257 (269)
+.|.....+|.....+..++++||.+||+.|.......--.-| ++..+|||.||+|+|+.||+++++..|+ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 4455555688337888999999999999999985422111112 3469999999999999999999999888 4
Q ss_pred EEEec
Q 044874 258 IEIFN 262 (269)
Q Consensus 258 i~l~~ 262 (269)
+||+-
T Consensus 83 mHlvv 87 (111)
T PF13881_consen 83 MHLVV 87 (111)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 56663
No 88
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.57 E-value=4.7e-07 Score=61.76 Aligned_cols=72 Identities=25% Similarity=0.374 Sum_probs=63.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc---C--EEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN---G--QVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~---G--~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
++|+|+..++..+++.|+|..+|.++|++|....+++- .|||.|. | +.|.+..+|++|||..+..|.|+-..
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 58999999999999999999999999999999999985 9999994 3 35789999999999988888877553
No 89
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.56 E-value=2.4e-07 Score=68.64 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=58.2
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccC-------CCCCEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHV-------GQGDTI 258 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i-------~~~~~i 258 (269)
+.+.|+-.. .++-+..+++.||.+||++|+..- ..|++.|+|+-.+.+|+|++||++||+ +.-.+|
T Consensus 3 vFlmIrR~K--TTiF~dakes~tVlelK~~iegI~-----k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~v 75 (119)
T cd01788 3 VFLMIRRHK--TTIFTDAKESTTVYELKRIVEGIL-----KRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATV 75 (119)
T ss_pred eEEEEEecc--eEEEeecCCcccHHHHHHHHHHHh-----cCChhHheeecCceeecccccHHHcCccccccccCCCCeE
Confidence 456666533 588899999999999999999975 899999999988889999999999999 666666
Q ss_pred EEe
Q 044874 259 EIF 261 (269)
Q Consensus 259 ~l~ 261 (269)
-|.
T Consensus 76 gLa 78 (119)
T cd01788 76 GLA 78 (119)
T ss_pred EEE
Confidence 554
No 90
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.46 E-value=2.9e-07 Score=65.41 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=44.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc---CEEc--CCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN---GQVL--QDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~---G~~L--~d~~tL~~~~i~~~~~i~l~ 70 (269)
|-|.|++.+| .+.+++++++|+.+|+++|++..++|...|.|+.+ ...| .++.+|+++|+++|+.|+|.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 6688888766 57889999999999999999999999999988654 2345 47899999999999999874
No 91
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.40 E-value=2.5e-06 Score=56.04 Aligned_cols=67 Identities=28% Similarity=0.427 Sum_probs=60.5
Q ss_pred EEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 5 FEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 5 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|+..++....+.+.++.|+.++|+++..+.|++++.++|+++|..+.+...+.+|++.+++.+++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444688899999999999999999999999999999999999999998888899999999998864
No 92
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.35 E-value=1.2e-06 Score=62.17 Aligned_cols=71 Identities=17% Similarity=0.312 Sum_probs=43.2
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec---Ceee--cCCCccccccCCCCCEEE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK---QNVM--DDDRSFRWHHVGQGDTIE 259 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~---g~~L--~d~~tL~~~~i~~~~~i~ 259 (269)
+|-|.|+..+| ...+++++++|+.+|+++|++. +++|.+.+.|..+ ...| .++.+|+++||+-||.||
T Consensus 4 ~milRvrS~dG--~~Rie~~~~~t~~~L~~kI~~~-----l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmly 76 (80)
T PF11543_consen 4 SMILRVRSKDG--MKRIEVSPSSTLSDLKEKISEQ-----LSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLY 76 (80)
T ss_dssp --EEEEE-SSE--EEEEEE-TTSBHHHHHHHHHHH-----S---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE
T ss_pred cEEEEEECCCC--CEEEEcCCcccHHHHHHHHHHH-----cCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEE
Confidence 57888888888 7788999999999999999996 4899888777522 2244 467899999999999999
Q ss_pred Eec
Q 044874 260 IFN 262 (269)
Q Consensus 260 l~~ 262 (269)
|.+
T Consensus 77 L~~ 79 (80)
T PF11543_consen 77 LKP 79 (80)
T ss_dssp ---
T ss_pred Eec
Confidence 863
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.20 E-value=9.2e-06 Score=53.26 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=57.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.+ ....+.+.+..|+.++|++|.++. +.+++.+.|.++|..+++...+.+|++.++++|++..
T Consensus 6 ~~-~~~~~~~~~~~tv~~l~~~i~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DG-KTVELLVPSGTTVADLKEKLAKKL-----GLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CC-CEEEEEcCCCCcHHHHHHHHHHHH-----CcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 44 777888889999999999999986 7899999999999999999988999999999999864
No 94
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.9e-05 Score=57.32 Aligned_cols=76 Identities=12% Similarity=0.248 Sum_probs=70.6
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
++.|+..++....+.|....+...|+...+++.|++.+..|+.|+|+.+.+.+|-.+.+.++++.|.++....||.
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 5677777788889999999999999999999999999999999999999999999999999999999999888775
No 95
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=6.7e-07 Score=59.14 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=61.3
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
++.+...-|+...+.+++++||+++|..|++++|-.++...|--.+..++|.-+|++|.|.+|-.+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 456666779999999999999999999999999999998888777778899999999999999887764
No 96
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=9.3e-06 Score=74.23 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=68.0
Q ss_pred EEEEcCCCCEEEEE-EcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 044874 3 VIFEPQRGKAFTIE-VGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQ 78 (269)
Q Consensus 3 i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~ 78 (269)
|.|| ..|+.+.++ ++.++|+..||++++..+|++|++|++.+.|..+.|+-.+...+|+++.+++|+.+...++.
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~~~e 81 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEAGLE 81 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccccccc
Confidence 4454 578899998 99999999999999999999999999999999999999999999999999999988875544
No 97
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=7.7e-06 Score=71.01 Aligned_cols=73 Identities=25% Similarity=0.522 Sum_probs=63.4
Q ss_pred CEEEEEcC---CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE-Eec
Q 044874 1 MDVIFEPQ---RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL-VAS 73 (269)
Q Consensus 1 M~i~vk~~---~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~-~~~ 73 (269)
|.+.|... .-..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|+.|.++.++..+.+..-+.+|++ +++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 66777653 23458889999999999999999999999999999999999999999999999888888877 444
No 98
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.08 E-value=1.9e-05 Score=54.02 Aligned_cols=72 Identities=17% Similarity=0.198 Sum_probs=58.3
Q ss_pred EEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeC---C--eeeccCCcccccCCCCCCEEEE
Q 044874 91 HLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSS---G--AELQDHRSLRDCELMDNAEIDV 165 (269)
Q Consensus 91 ~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~---g--~~L~d~~~L~~y~i~~~~~i~l 165 (269)
+|.|+...... .........+|..+|++|+...|++- .|+|.|. | +.|.+..+|++|||.....|.|
T Consensus 2 qVtV~q~g~~d-------l~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~l 73 (80)
T cd01811 2 QVTVEQTGYSD-------WILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICL 73 (80)
T ss_pred EEEeeecCCCc-------eEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEE
Confidence 56676666655 56666778999999999999999996 9999983 3 4578999999999999888888
Q ss_pred EEccC
Q 044874 166 HVRPS 170 (269)
Q Consensus 166 ~~~~~ 170 (269)
.-..+
T Consensus 74 leT~p 78 (80)
T cd01811 74 LETFP 78 (80)
T ss_pred EecCC
Confidence 75543
No 99
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=5.3e-05 Score=65.89 Aligned_cols=64 Identities=19% Similarity=0.322 Sum_probs=59.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
..++++|+.+.++++||+.+..+. |+|+++.++||.|++|.|+.++..+.+...+.+|++..|.
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~-----gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQ-----GVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhh-----CCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 678899999999999999999986 9999999999999999999999999999999999985543
No 100
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.59 E-value=9.5e-05 Score=53.04 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=50.8
Q ss_pred CEEEEEcC-CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE-cC-EEcCCCCccccCCCC
Q 044874 1 MDVIFEPQ-RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF-NG-QVLQDDRDVEHCEIL 62 (269)
Q Consensus 1 M~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~G-~~L~d~~tL~~~~i~ 62 (269)
|.+|++.. ...++.++++++.||-+||.+++....-|++.|||+. .. +.|+|.++|+++|..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 44555533 3456888999999999999999999999999999987 33 578999999999653
No 101
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00091 Score=48.66 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=68.6
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
..+++-|+-..+ ..+.+.|..+.....|.+.-+++. |++.+..+|.|+|+.+.+..|=.+-+.++||.|.++.-
T Consensus 19 ~hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~r~-----Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 19 EHINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCERQ-----GLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred ceEEEEEecCCC-CEEEEEeecCChHHHHHHHHHHHc-----CCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEee
Confidence 457788877555 778899999999999999999987 99999999999999999999999999999999999865
Q ss_pred cccC
Q 044874 264 SVTG 267 (269)
Q Consensus 264 ~~~~ 267 (269)
-++|
T Consensus 93 q~gG 96 (99)
T KOG1769|consen 93 QTGG 96 (99)
T ss_pred cccC
Confidence 4444
No 102
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.33 E-value=0.0012 Score=44.79 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=46.0
Q ss_pred ecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 192 TQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 192 ~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
..++ +.+.+.+.++.++.++-++.+.+. ++.++.+.|.|+++.|+-+.+++-.|+.+|+.+.+
T Consensus 3 ~~~~-rr~~vkvtp~~~l~~VL~eac~k~-----~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNF-RRFKVKVTPNTTLNQVLEEACKKF-----GLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS--EEEE---TTSBHHHHHHHHHHHT-----T--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCC-cEEEEEECCCCCHHHHHHHHHHHc-----CCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 3456 899999999999999999999985 99999999999999999999999999999999875
No 103
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.29 E-value=0.0013 Score=44.68 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=47.1
Q ss_pred cCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEE
Q 044874 7 PQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 7 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
..+++.+.+.+.|+.++.++-+....++++++++-.|.|+++.|+-+.++.-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 457889999999999999999999999999999999999999999999999999999998865
No 104
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.27 E-value=0.00059 Score=49.04 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=49.5
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe-cC-eeecCCCccccccCC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY-KQ-NVMDDDRSFRWHHVG 253 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~-~g-~~L~d~~tL~~~~i~ 253 (269)
+.+.|+-.. .++-+..+++.||.+||++++..- .-|++.|+|.- .- ..|+|.+||.++|..
T Consensus 3 ~f~~VrR~k--ttif~da~es~tV~elK~~l~gi~-----~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHK--TTIFTDAKESSTVFELKRKLEGIL-----KRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eeeeeeecc--eeEEeecCccccHHHHHHHHHHHH-----hCCCcchheeecCHHHHhhccchhhhcccc
Confidence 455666543 578889999999999999999975 78999999885 33 789999999999654
No 105
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.24 E-value=0.0027 Score=50.70 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=59.1
Q ss_pred CEEEEEcCCC----CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEc-CEEc--CCCCccccCCCCCC----CEEE
Q 044874 1 MDVIFEPQRG----KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFN-GQVL--QDDRDVEHCEILQN----SRIQ 68 (269)
Q Consensus 1 M~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~-G~~L--~d~~tL~~~~i~~~----~~i~ 68 (269)
|+|+|++++| .++.+.++++.||.+|+..|....+++...| .|.+. ++.| .++..++.+.-.+. .+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 7899999999 6899999999999999999999999998885 45553 4455 45555666544333 4677
Q ss_pred EEEecCCCC
Q 044874 69 LLVASDNKP 77 (269)
Q Consensus 69 l~~~~~~g~ 77 (269)
+..+..||-
T Consensus 81 l~~rl~GGK 89 (162)
T PF13019_consen 81 LSLRLRGGK 89 (162)
T ss_pred EEEeccCCC
Confidence 778887763
No 106
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.22 E-value=0.00093 Score=47.25 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=48.5
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc------EEEE-EcCEEcCCCCccccCCCCCCCEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK------QTLV-FNGQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~------q~L~-~~G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
+|+|...+|+.+.+.+..+.+|++|...+.+..+.+... .+|. -+|..|.++.+|+++||.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 567776557899999999999999999999988763332 3344 3588999999999999999999886
No 107
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00019 Score=47.67 Aligned_cols=69 Identities=14% Similarity=0.302 Sum_probs=57.2
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+.++..-| +.+.++..+.+||.|+|+.|.... |-.++...|---+.+++|.-+|++|.|.+|--+.+.
T Consensus 3 ev~~nDrLG-KKVRvKCn~dDtiGD~KKliaaQt-----GT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLG-KKVRVKCNTDDTIGDLKKLIAAQT-----GTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcC-ceEEEEeCCcccccCHHHHHHHhh-----CCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 345555567 899999999999999999999864 888887666666778899999999999999887764
No 108
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00076 Score=47.90 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=67.7
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
.+.|...+|.++.+.+..+.+...|....+...|-..+..|+.|+|+.++.++|-++++.++++.|.++....||.
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 3556667888999999999999999999999999999999999999999999999999999999888776666654
No 109
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0012 Score=60.77 Aligned_cols=68 Identities=22% Similarity=0.367 Sum_probs=60.8
Q ss_pred eEEEEecCCCeEEEEE-ecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 187 KLLVLTQCGNKRIPVE-VNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~-v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+.|+ ..| +.+.++ ++..+|+..||+++.... |+|+++|+++..|..+.|+-.+..-+|++|.+|+++
T Consensus 5 ~v~VK-W~g-k~y~v~~l~~d~t~~vlKaqlf~LT-----gV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMm 73 (473)
T KOG1872|consen 5 TVIVK-WGG-KKYPVETLSTDETPSVLKAQLFALT-----GVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMM 73 (473)
T ss_pred eEeee-ecC-ccccceeccCCCchHHHHHHHHHhc-----CCCccceeEEEecccccccccccccccCCCCEEEee
Confidence 34454 344 888887 999999999999999986 999999999999999999999999999999999997
No 110
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.09 E-value=0.0023 Score=45.18 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=48.3
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCC---CC---ceEEE-ecCeeecCCCccccccCCCCCEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLP---QD---GYFFI-YKQNVMDDDRSFRWHHVGQGDTI 258 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p---~~---~q~l~-~~g~~L~d~~tL~~~~i~~~~~i 258 (269)
..|+|....| +.+-+.+....+|++|-..|-+.- +.+ .. .+.|. -+|..|+++.||++|||.+|+++
T Consensus 3 ~rVtv~~~~~-~~~Dl~lP~~vpv~~li~~l~~~~-----~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L 76 (79)
T PF08817_consen 3 CRVTVDAGNG-RQVDLALPADVPVAELIPELVELL-----GLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVL 76 (79)
T ss_dssp EEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS--------S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EE
T ss_pred EEEEEEcCCC-cEEEEEcCCCCcHHHHHHHHHHHh-----CCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEE
Confidence 3556655444 899999999999999999988853 332 22 35666 67999999999999999999999
Q ss_pred EE
Q 044874 259 EI 260 (269)
Q Consensus 259 ~l 260 (269)
+|
T Consensus 77 ~L 78 (79)
T PF08817_consen 77 VL 78 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 111
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.07 E-value=0.0062 Score=43.13 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=58.4
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEE--EcCEEcCCC--CccccCCCCCCCEEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLV--FNGQVLQDD--RDVEHCEILQNSRIQLL 70 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~--~~G~~L~d~--~tL~~~~i~~~~~i~l~ 70 (269)
+|.||..+|+.+.-.+.+++||.+|.+-|......+... ..|+ |..+.+.++ .+|++.|+.++++|++.
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 578999999999999999999999999999988776654 7776 457788543 69999999999998874
No 112
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.98 E-value=0.0022 Score=47.15 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=44.8
Q ss_pred EEEEcCC-CCEEEEEEc--CCCCHHHHHHHHHHHhC--CCCCcEEEEEcCEEcCCCCccccCC
Q 044874 3 VIFEPQR-GKAFTIEVG--FFDTVLEIKEKIEKYQG--IPVPKQTLVFNGQVLQDDRDVEHCE 60 (269)
Q Consensus 3 i~vk~~~-g~~~~l~v~--~~~tV~~lK~~I~~~~g--i~~~~q~L~~~G~~L~d~~tL~~~~ 60 (269)
|+|+..+ -..+.++++ ...||..||.+|.+..+ ..-.++||+|+|+.|.|+..|...-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 5566544 234677777 78999999999999983 5555789999999999988876643
No 113
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.0018 Score=53.37 Aligned_cols=64 Identities=33% Similarity=0.509 Sum_probs=57.1
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.++.+.+.+...+|+.++|.++++..++++..|+++|+|..|-|...|..|+++.+....+-+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4677888889999999999999999999999999999999999999999999999965555443
No 114
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.85 E-value=0.0034 Score=46.20 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=38.2
Q ss_pred eEEEEEec--CCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCcccccc
Q 044874 197 KRIPVEVN--ASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHH 251 (269)
Q Consensus 197 ~~~~l~v~--~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~ 251 (269)
..+.+++. .+.||..||+.|.+.-. -......++|||+|+.|.|...|...-
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p---~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLP---PEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcC---CCCccccEEeeecCcccCccchhhhhh
Confidence 44666666 78899999999999630 012223599999999999988776544
No 115
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.76 E-value=0.017 Score=40.89 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=58.3
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEE--ecCeeecCC--CccccccCCCCCEE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFI--YKQNVMDDD--RSFRWHHVGQGDTI 258 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~--~~g~~L~d~--~tL~~~~i~~~~~i 258 (269)
....|.|+.++| ..+.-....++||.+|..-|.... ..+... +.|+ |-.+.+.++ .||.+.|+.+..+|
T Consensus 5 ~~~~I~vRlpdG-~~l~~~F~~~~tl~~l~~~v~~~~-----~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l 78 (82)
T PF00789_consen 5 DVVRIQVRLPDG-SRLQRRFPKSDTLQDLYDFVESQL-----FSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATL 78 (82)
T ss_dssp SEEEEEEEETTS-TEEEEEEETTSBHHHHHHHHHHHH-----HCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEE
T ss_pred CEEEEEEECCCC-CEEEEEECCcchHHHHHHHHHHhc-----CCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEE
Confidence 357888899998 888889999999999999998864 333333 6776 778888665 59999999999998
Q ss_pred EEe
Q 044874 259 EIF 261 (269)
Q Consensus 259 ~l~ 261 (269)
+|-
T Consensus 79 ~v~ 81 (82)
T PF00789_consen 79 IVE 81 (82)
T ss_dssp EEE
T ss_pred EEE
Confidence 873
No 116
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.72 E-value=0.017 Score=40.74 Aligned_cols=68 Identities=13% Similarity=0.057 Sum_probs=56.1
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcCC---CCccccCCCCCCCEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQD---DRDVEHCEILQNSRIQL 69 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d---~~tL~~~~i~~~~~i~l 69 (269)
+|-||..+|+.+.-.+..++||.++.+-|....+.......|+. ..+.+.+ +.+|.+.|+...+++.+
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 57899999999999999999999999999766666666677764 4677753 47999999998888876
No 117
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.62 E-value=0.026 Score=38.76 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=53.3
Q ss_pred EEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCC-C--CceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 190 VLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLP-Q--DGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 190 V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p-~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
.+..+| .++-+.++...++..|-..+-+.. ...++ . .+.+.+-+++.|.++..|.+|+|.+||.+.+
T Consensus 11 ~t~y~g-~~yDLrl~d~~pikklIdivwe~~---kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 11 FTNYNG-GTYDLRLPDYLPIKKLIDIVWESL---KISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred eEecCC-ceEEEeccccchHHHHHHHHHHHh---hccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 356676 899999999999998887776654 12222 2 3477889999999999999999999999876
No 118
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0056 Score=43.56 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 181 MGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 181 ~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
+.++.+.+.|....| .++-++|..+.+...|-+..+.+. |=..+..|+.|+|+..+-++|=.+.+.++++.|..
T Consensus 20 p~t~hinLkvv~qd~-telfFkiKktT~f~klm~af~~rq-----GK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 20 PITKHINLKVVDQDG-TELFFKIKKTTTFKKLMDAFSRRQ-----GKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred ccccccceEEecCCC-CEEEEEEeccchHHHHHHHHHHHh-----CcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 344567888877777 788899999999999999888876 77788899999999999999999999999999988
Q ss_pred ecCcccC
Q 044874 261 FNGSVTG 267 (269)
Q Consensus 261 ~~~~~~~ 267 (269)
+..-|.|
T Consensus 94 v~eQvGG 100 (103)
T COG5227 94 VTEQVGG 100 (103)
T ss_pred HHHHhcC
Confidence 7665554
No 119
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.44 E-value=0.007 Score=51.30 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=53.5
Q ss_pred CEEEEEcCCCC-EEE-EEEcCCCCHHHHHHHHHHH-hCCCCCcEEEEE----cCEEcCCCCccccCCCCCCCEEEE
Q 044874 1 MDVIFEPQRGK-AFT-IEVGFFDTVLEIKEKIEKY-QGIPVPKQTLVF----NGQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 1 M~i~vk~~~g~-~~~-l~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~----~G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
|.|++.+.++. ..+ ...+...|+.|+++++.++ ..+.+.++|+.+ +|+.|.|+.+|++|+..+++++.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 78999877652 333 5677889999999777666 467776666655 599999999999999999977664
No 120
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.43 E-value=0.024 Score=38.91 Aligned_cols=69 Identities=10% Similarity=0.209 Sum_probs=55.9
Q ss_pred CEEEEE--cCCCCEEEEEEcCCCCHHHHHHHHHHHhCCC-----CCcEEEEEcCEEcCCCCccccCCCCCCCEEEE
Q 044874 1 MDVIFE--PQRGKAFTIEVGFFDTVLEIKEKIEKYQGIP-----VPKQTLVFNGQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 1 M~i~vk--~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~-----~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
|+|+|. .-+|.++.+.++...++..|-..+.+...+. -++.|..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 345554 4479999999999999999998888776532 24568888899999999999999999998764
No 121
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.43 E-value=0.029 Score=39.61 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=52.5
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCC-CCCcEEEE--EcCEEcC-CCCccccCCCCCCCEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGI-PVPKQTLV--FNGQVLQ-DDRDVEHCEILQNSRI 67 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~--~~G~~L~-d~~tL~~~~i~~~~~i 67 (269)
+|-||..+|+.+...++.++||++|.+-|....+- ......|. |-.+.|. ++.||.+.|+.+...+
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 57889999999999999999999999999987643 23456675 5678774 4889999999865443
No 122
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.33 E-value=0.036 Score=39.12 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=55.9
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecC---CCccccccCCCCCEEE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDD---DRSFRWHHVGQGDTIE 259 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~ 259 (269)
...|.|+.++| ..+.-....++|+.+|.+-+.... +.....+.|+ |-.+.+.+ +.||.+.|+-+..+|.
T Consensus 4 ~~~I~iRlPdG-~ri~~~F~~~~tl~~v~~~v~~~~-----~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~ 77 (80)
T smart00166 4 QCRLQIRLPDG-SRLVRRFPSSDTLRTVYEFVSAAL-----TDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLV 77 (80)
T ss_pred eEEEEEEcCCC-CEEEEEeCCCCcHHHHHHHHHHcc-----cCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEE
Confidence 36788888898 888889999999999999996543 4444456665 77888865 4799999999998887
Q ss_pred E
Q 044874 260 I 260 (269)
Q Consensus 260 l 260 (269)
|
T Consensus 78 v 78 (80)
T smart00166 78 L 78 (80)
T ss_pred E
Confidence 6
No 123
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.19 E-value=0.067 Score=37.69 Aligned_cols=67 Identities=10% Similarity=0.195 Sum_probs=54.5
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE--EcCEEcCC---CCccccCCCCCCCEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV--FNGQVLQD---DRDVEHCEILQNSRIQL 69 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~d---~~tL~~~~i~~~~~i~l 69 (269)
+|.||..+|+.+.-.++.++|+.++.+-|....+-+ ....|+ |..+.+.+ +.+|.+.|+.+.+++.|
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 578899999999999999999999999998765433 446665 45777753 58999999999988876
No 124
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.19 E-value=0.058 Score=37.71 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=50.9
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcC---CCCccccCCCCCCCE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQ---DDRDVEHCEILQNSR 66 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~---d~~tL~~~~i~~~~~ 66 (269)
+|.||..+|+.+.-.++.++||.+|.+-|.....- .....|+. ..+.+. .+.+|.+.|+.+.+.
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~ 72 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVV 72 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceE
Confidence 57899999999999999999999999999876543 45566664 467774 488999999995443
No 125
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=96.11 E-value=0.055 Score=37.81 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=52.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecC---CCccccccCCCCCEEEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDD---DRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~l 260 (269)
..|.|+.++| ..+.-..+.++||.+|.+=|.... .....+.|+ |-.+.+.| +.||.+.|+. .+++.+
T Consensus 3 t~i~iRlpdG-~~~~~~F~~~~tl~~l~~fv~~~~------~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDG-KRLEQRFNSTHKLSDVRDFVESNG------PPAEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred EEEEEEcCCC-CEEEEEeCCCCCHHHHHHHHHHcC------CCCCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 4677888898 788889999999999999998753 224456666 77888865 7899999999 455544
No 126
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.01 Score=49.11 Aligned_cols=63 Identities=13% Similarity=0.195 Sum_probs=55.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
+.+.+.+...+||.++|.+++..+ +..+..|+..|+|+.|-|...|.+|+|+.|.. |++..+|
T Consensus 157 ~d~~lta~~~Dtv~eik~~L~Aae-----g~D~~sQrif~Sg~~l~dkt~LeEc~iekg~r-YvlqviV 219 (231)
T KOG0013|consen 157 EDFWLTAPHYDTVGEIKRALRAAE-----GVDPLSQRIFFSGGVLVDKTDLEECKIEKGQR-YVLQVIV 219 (231)
T ss_pred hheeecccCcCcHHHHHHHHHHhh-----ccchhhheeeccCCceeccccceeeeecCCCE-EEEEEEe
Confidence 789999999999999999999998 78877899999999999999999999999975 4444444
No 127
>PRK06437 hypothetical protein; Provisional
Probab=96.04 E-value=0.057 Score=36.81 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=46.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 195 GNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 195 g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
|++.-.++++...||.+|=+++ ++++....+..+|+++. .++-+++||.|.++. .|+||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L---------gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~-~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL---------GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE-VFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc---------CCCCccEEEEECCEECC-----CceEcCCCCEEEEEe-cccCC
Confidence 4477778888888998886544 78888888889999997 667889999999985 44444
No 128
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.02 E-value=0.015 Score=49.33 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=49.9
Q ss_pred eEEEEecCCCeEEE-EEecCCCcHHHHHHHHHHhhhccCCCCCCCc----eEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 187 KLLVLTQCGNKRIP-VEVNASDNVSELRKELQKLHQRYHFHLPQDG----YFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 187 ~i~V~~~~g~~~~~-l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~----q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.|++...+++...+ ...+...|+.|+++.+..++ ..+.+.. .++.-+|+.|-|+.+|++||..+|++|++=
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~----~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKN----LKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhh----hccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 34444433323333 45566889999998888875 3444433 444567999999999999999999999874
No 129
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.02 E-value=0.073 Score=38.14 Aligned_cols=69 Identities=9% Similarity=0.187 Sum_probs=55.9
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeec--------CCCccccccCCC
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMD--------DDRSFRWHHVGQ 254 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~--------d~~tL~~~~i~~ 254 (269)
..+|.++.++| ..+.-....++||++|..=|... +..++.+.|+ |--+++. .+.||.+.|+.+
T Consensus 4 ~~~I~iRlp~G-~Rl~rrF~~~~tl~~l~~fv~~~------~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~ 76 (85)
T cd01774 4 TVKIVFKLPNG-TRVERRFLFTQSLRVIHDFLFSL------KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSN 76 (85)
T ss_pred eEEEEEECCCC-CEEEEEeCCCCcHHHHHHHHHhC------CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCC
Confidence 47888888898 78888888999999999999764 4455778888 4448886 367999999999
Q ss_pred CCEEEE
Q 044874 255 GDTIEI 260 (269)
Q Consensus 255 ~~~i~l 260 (269)
..+|.|
T Consensus 77 s~~L~V 82 (85)
T cd01774 77 SEVLFV 82 (85)
T ss_pred ccEEEE
Confidence 888776
No 130
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.85 E-value=0.12 Score=36.78 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=58.8
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEc---CCCCccccCCCCCCCEEEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVL---QDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L---~d~~tL~~~~i~~~~~i~l~~ 71 (269)
+|.||..+|+...-.+..++++.+|-.-+.. .|.+++...|+. --+.+ +.+.||.+.|+.+..++.+--
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 6889999999999999999999999999998 578888899875 46666 335899999999999988753
No 131
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.81 E-value=0.11 Score=36.97 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=59.5
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecC---CCccccccCCCCCEEE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDD---DRSFRWHHVGQGDTIE 259 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~ 259 (269)
.-+|.|+.++| ..+.-....++++++|..=+... |.+.+.+.|+ |--|++.. +.||.+.|+.+..+|+
T Consensus 5 ~t~i~vRlP~G-~r~~rrF~~~~~L~~v~~fv~~~------g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~Lf 77 (82)
T cd01773 5 KARLMLRYPDG-KREQIALPEQAKLLALVRHVQSK------GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVF 77 (82)
T ss_pred eeEEEEECCCC-CEEEEEeCCCCcHHHHHHHHHhc------CCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEE
Confidence 46888999999 88888899999999999998884 6788888888 77887743 4799999999999998
Q ss_pred Ee
Q 044874 260 IF 261 (269)
Q Consensus 260 l~ 261 (269)
|=
T Consensus 78 Vq 79 (82)
T cd01773 78 VQ 79 (82)
T ss_pred Ee
Confidence 74
No 132
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.74 E-value=0.091 Score=37.02 Aligned_cols=68 Identities=6% Similarity=0.153 Sum_probs=54.7
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecC---CCccccccCCCCCEEEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDD---DRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~l 260 (269)
..|.|+.++| ..+.-..+.++|+++|++-++... +- ...+.|+ |-.+++.+ +.||.+.|+.+..+|+|
T Consensus 5 ~~i~iRlp~G-~~~~~~F~~~~tl~~v~~fV~~~~-----~~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDG-TTLKQTFKAREQLAAVRLFVELNT-----GN-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCC-CEEEEEeCCCChHHHHHHHHHHcC-----CC-CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5678888898 788888999999999999998742 21 2446666 88998864 47999999999998876
No 133
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.71 E-value=0.13 Score=36.76 Aligned_cols=68 Identities=13% Similarity=0.132 Sum_probs=55.9
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc--CEEcC--------CCCccccCCCCCCCEEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN--GQVLQ--------DDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~--G~~L~--------d~~tL~~~~i~~~~~i~l~ 70 (269)
+|-||..+|+.+.-.+..++||++|..-|.. .+..+....|+++ -+.+. .+.||++.|+.+..++.+.
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 6788999999999999999999999999965 4556678888865 36775 3679999999988877663
No 134
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.50 E-value=0.11 Score=41.73 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=53.3
Q ss_pred eeEEEEecCCC---eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEe-cCeee--cCCCccccccCCCCC--
Q 044874 186 LKLLVLTQCGN---KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIY-KQNVM--DDDRSFRWHHVGQGD-- 256 (269)
Q Consensus 186 ~~i~V~~~~g~---~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~-~g~~L--~d~~tL~~~~i~~~~-- 256 (269)
|+|+|.++.|- .++.+.++.+.||.+|+..|.+.. ++|... +.|.+ .++.| .++..+..+.-.+.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~-----~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~ 75 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERL-----PIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSD 75 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhc-----CCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCC
Confidence 57889988873 588899999999999999999975 777765 44555 35555 455566666554443
Q ss_pred --EEEEecCcccCC
Q 044874 257 --TIEIFNGSVTGG 268 (269)
Q Consensus 257 --~i~l~~~~~~~~ 268 (269)
++.+.. ++.||
T Consensus 76 ~~~l~l~~-rl~GG 88 (162)
T PF13019_consen 76 FITLRLSL-RLRGG 88 (162)
T ss_pred ceEEEEEE-eccCC
Confidence 455544 34443
No 135
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.45 E-value=0.11 Score=36.61 Aligned_cols=68 Identities=13% Similarity=0.240 Sum_probs=51.8
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecC-CCccccccCCCCCEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDD-DRSFRWHHVGQGDTI 258 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d-~~tL~~~~i~~~~~i 258 (269)
.+|.|+.++| +.+....+.++||.+|++-+..... ......+.|+ |-.+.|.| +.||.+.|+.+...+
T Consensus 5 t~iqiRlpdG-~r~~~rF~~~~tv~~l~~~v~~~~~----~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 5 TSIQIRLADG-KRLVQKFNSSHRVSDVRDFIVNARP----EFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eEEEEECCCC-CEEEEEeCCCCcHHHHHHHHHHhCC----CCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 5788888998 8888899999999999999987431 1112346665 78888866 579999999975543
No 136
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.28 E-value=0.21 Score=34.27 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=47.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|.++... ....++++...||.+|-+++ +++.....+..+|..... ++-+++||.|.+++ .|
T Consensus 5 m~v~vng~~--~~~~~~~~~~~tv~~ll~~l---------~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~-~V 67 (70)
T PRK08364 5 IRVKVIGRG--IEKEIEWRKGMKVADILRAV---------GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIP-VV 67 (70)
T ss_pred EEEEEeccc--cceEEEcCCCCcHHHHHHHc---------CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEc-cc
Confidence 455554321 24567788888999988655 677666777889998853 66689999999985 45
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
+||
T Consensus 68 ~GG 70 (70)
T PRK08364 68 SGG 70 (70)
T ss_pred cCC
Confidence 554
No 137
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.20 E-value=0.22 Score=35.19 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=57.5
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeec---CCCccccccCCCCCEEE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMD---DDRSFRWHHVGQGDTIE 259 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~ 259 (269)
..+|.++.++| ..+.-....++++.+|..=+... +.+...+.|+ |--+++. .+.||.+.|+.+..+|.
T Consensus 4 ~~~i~iRlP~G-~r~~rrF~~t~~L~~l~~fv~~~------~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~ 76 (80)
T cd01771 4 ISKLRVRTPSG-DFLERRFLGDTPLQVLLNFVASK------GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLI 76 (80)
T ss_pred eEEEEEECCCC-CEEEEEeCCCCcHHHHHHHHHhc------CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEE
Confidence 36788888898 78888899999999999999874 6677778887 8888884 24699999999999987
Q ss_pred E
Q 044874 260 I 260 (269)
Q Consensus 260 l 260 (269)
|
T Consensus 77 V 77 (80)
T cd01771 77 L 77 (80)
T ss_pred E
Confidence 7
No 138
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.17 E-value=0.23 Score=35.14 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=57.0
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcC---CCCccccCCCCCCCEEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQ---DDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~---d~~tL~~~~i~~~~~i~l~ 70 (269)
+|-||..+|+...-.+..++++.+|-.-+... |.++...+|+. --+.+. .+.+|.+.|+....++.+-
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 67889999999999999999999999999875 77777888874 466663 3579999999988888764
No 139
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.78 E-value=0.19 Score=35.06 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=44.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
....++++...||.+|.+.+.+..... .+.......+.-+|+... .++-+++||.|.+++ .++||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~p-pv~GG 80 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGL-LEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIP-PVSGG 80 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchH-HHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeC-CCCCC
Confidence 456778877899999999998853100 011223455667888776 456799999999986 56665
No 140
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=94.73 E-value=0.14 Score=34.48 Aligned_cols=57 Identities=28% Similarity=0.425 Sum_probs=42.3
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
++++...||.+|.+++ +++.+...+..+|+....+ ...++-+++||.|.++. .++||
T Consensus 9 ~~~~~~~tv~~ll~~l---------~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~-~v~GG 65 (65)
T cd00565 9 REVEEGATLAELLEEL---------GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVT-AVGGG 65 (65)
T ss_pred EEcCCCCCHHHHHHHc---------CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEE-eccCC
Confidence 3566778999888665 6777777888999988654 45556799999999985 45554
No 141
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=94.47 E-value=0.28 Score=32.97 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=42.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+| +.+.+ + ..|+.+|.+.+ +++.....+-.++..+.- ....+.-+++||.|.++. .|+||
T Consensus 6 Ng-~~~~~--~-~~tl~~Ll~~l---------~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~-~V~GG 65 (65)
T PRK06488 6 NG-ETLQT--E-ATTLALLLAEL---------DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILS-PMQGG 65 (65)
T ss_pred CC-eEEEc--C-cCcHHHHHHHc---------CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEE-eccCC
Confidence 45 66655 3 35888887654 566655667789998863 356678899999999985 45554
No 142
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.14 Score=42.32 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=50.5
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE-EcC-----EEc-CCCCccccCCCCCCCEEEEEEecC
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV-FNG-----QVL-QDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~G-----~~L-~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
.....+++.||++||.+++..+|.+++.++|. |.| ..| +++..|..|+..+|..||++=...
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~ 83 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNA 83 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCc
Confidence 34456899999999999999999999999885 443 246 467889999999999999885543
No 143
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.24 E-value=0.55 Score=33.73 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=47.0
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc----CE-Ec-CCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN----GQ-VL-QDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~----G~-~L-~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
..++..++..|||+.+...+.+.+.| ...-||.-. +. .| +.+.|+.+.++.+|.+|.+-.+..+|.
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGt 85 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDGT 85 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS-
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCCC
Confidence 46777889999999999999999999 566787542 33 36 456799999999999999999887764
No 144
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=94.01 E-value=0.25 Score=34.07 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=49.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 198 RIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 198 ~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
...+.+....||.+|.+.+..+..+.. ......+..+|+...+ .-.++-+++||.|.+++ .++||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~---~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~p-pvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELA---LRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILP-PVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGH---TTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEE-STSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccc---cCccEEEEECCEEcCC--ccCCcCcCCCCEEEEEC-CCCCC
Confidence 455778889999999999988642111 3356778899999988 36677889999999986 56655
No 145
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.93 E-value=0.11 Score=36.46 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=46.5
Q ss_pred ecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCcccccc-CCCCCEEEEec
Q 044874 203 VNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHH-VGQGDTIEIFN 262 (269)
Q Consensus 203 v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~-i~~~~~i~l~~ 262 (269)
|.+.++|.++|+-+.... .-..-..+.|.++|+.|+|...|.+.. +++|.+|.|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~----~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESP----ETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCc----cccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 567899999999998864 134445688999999999988888875 99999999985
No 146
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.85 E-value=0.13 Score=36.05 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=46.6
Q ss_pred EcCCCCHHHHHHHHHHHhC-CCCCcEEEEEcCEEcCCCCccccC-CCCCCCEEEEEEecC
Q 044874 17 VGFFDTVLEIKEKIEKYQG-IPVPKQTLVFNGQVLQDDRDVEHC-EILQNSRIQLLVASD 74 (269)
Q Consensus 17 v~~~~tV~~lK~~I~~~~g-i~~~~q~L~~~G~~L~d~~tL~~~-~i~~~~~i~l~~~~~ 74 (269)
|+++++|.++++-+..... ..-....|.++|..|++...|++. |+++++++.++..+-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~pY 60 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEPY 60 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecCC
Confidence 5788999999999988754 444557888999999998888887 688899888886543
No 147
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=93.81 E-value=0.28 Score=32.94 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=40.6
Q ss_pred EecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 202 EVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 202 ~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
++....||.+|.+.+ +++++...+..+|+....+ ...++-+++||.|.++. .|+||
T Consensus 9 ~~~~~~tv~~ll~~l---------~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~-~V~GG 64 (64)
T TIGR01683 9 EVEDGLTLAALLESL---------GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVT-FVGGG 64 (64)
T ss_pred EcCCCCcHHHHHHHc---------CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEE-eccCC
Confidence 456677888888754 6677777778899988533 34567799999999985 44444
No 148
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=93.79 E-value=0.17 Score=35.87 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=40.5
Q ss_pred CcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCCCEEEEEEccC
Q 044874 115 VNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDNAEIDVHVRPS 170 (269)
Q Consensus 115 ~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~~~i~l~~~~~ 170 (269)
...++..||..++++.|+..+...+...+..|+++++|.+-+++-...+.+.+...
T Consensus 11 I~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 11 IREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp SSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred cCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 45678899999999999999999998888889999999999999999999877655
No 149
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=93.33 E-value=0.74 Score=31.98 Aligned_cols=58 Identities=19% Similarity=0.147 Sum_probs=47.1
Q ss_pred EEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCC-cEEEEE----cC--EEcCCCCccccCCCC
Q 044874 5 FEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVP-KQTLVF----NG--QVLQDDRDVEHCEIL 62 (269)
Q Consensus 5 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~----~G--~~L~d~~tL~~~~i~ 62 (269)
|+.++|...+++++++.|+.++=++|++..++... -.-|.| +| .-|+.+++|.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 56789999999999999999999999999997644 367888 22 247888899988776
No 150
>PRK06437 hypothetical protein; Provisional
Probab=93.25 E-value=1.2 Score=30.30 Aligned_cols=58 Identities=19% Similarity=0.211 Sum_probs=45.9
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
+++...++++...|+.+|-+. .++++....+..+|..+. .++-+++|+.|.++--..|
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccC
Confidence 566788888888999988765 588888888889999987 5566778999988765444
No 151
>PRK07440 hypothetical protein; Provisional
Probab=93.08 E-value=0.88 Score=31.20 Aligned_cols=62 Identities=18% Similarity=0.307 Sum_probs=45.7
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.|+|.+ +| +. +++....||.+|-+++ ++++....+-.+|.++.-+ ...++-+++||.|.++.
T Consensus 4 ~m~i~v---NG-~~--~~~~~~~tl~~lL~~l---------~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 4 PITLQV---NG-ET--RTCSSGTSLPDLLQQL---------GFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVT 65 (70)
T ss_pred ceEEEE---CC-EE--EEcCCCCCHHHHHHHc---------CCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 466666 45 54 4566778888776432 7888788888999998743 56667799999999984
No 152
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=92.78 E-value=0.92 Score=32.31 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=43.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCC-CC-----CCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHF-HL-----PQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~-~~-----p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
....++++ ..||.+|.+.+.++.++... -+ ..+...+..+|+....+.. .-+++||.|.+++ .|+||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~P-pvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFP-PVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeC-CCcCC
Confidence 45667776 88999999999886421000 01 1123455667776654432 5789999999987 67766
No 153
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=0.058 Score=47.78 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=46.8
Q ss_pred eeEEEEecCC-CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC-ceEEEecCeeecCCCcccccc
Q 044874 186 LKLLVLTQCG-NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD-GYFFIYKQNVMDDDRSFRWHH 251 (269)
Q Consensus 186 ~~i~V~~~~g-~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~-~q~l~~~g~~L~d~~tL~~~~ 251 (269)
..++++..+- .+.+.+..+...||.+||..+..... +=|.. .|||+|.|+.|.|...|.|.=
T Consensus 10 v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyP----skpl~~dqrliYsgkllld~qcl~d~l 73 (391)
T KOG4583|consen 10 VTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYP----SKPLELDQRLIYSGKLLLDHQCLTDWL 73 (391)
T ss_pred eEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCC----CCCchhhHHHHhhccccccchhHHHHH
Confidence 5666666553 45677888899999999999988652 22222 499999999999998887643
No 154
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=92.65 E-value=1.2 Score=29.80 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+| +|+.+.+ + ..|+.+|.+.+ ++++....+-.++..+. .....+.-+.+|+.|.++-...||
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 66766 5676666 3 35899888764 67776667788898776 344567778899999988665544
No 155
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=92.51 E-value=0.99 Score=31.57 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=43.6
Q ss_pred eEEEEEecCC-CcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 197 KRIPVEVNAS-DNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 197 ~~~~l~v~~~-~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
....+++... .||.+|++.+.++.+. +.-......+..+++...+ +.-+++||.|.+++ .|+||
T Consensus 16 ~~~~~~~~~~~~tv~~L~~~L~~~~p~--l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~P-pvsGG 80 (80)
T TIGR01682 16 DEETLELPDESTTVGELKEHLAKEGPE--LAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIP-PVSGG 80 (80)
T ss_pred CeEEEECCCCCcCHHHHHHHHHHhCch--hhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeC-CCCCC
Confidence 4456778766 8999999999987521 0001122445567777663 56789999999987 67666
No 156
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.42 E-value=0.59 Score=32.90 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=42.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC--CceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ--DGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
....++++...||.+|++.+...++ ++.. ....+..+|+... .++-+++||+|.+++ .|+||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p----~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~P-pvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFP----SLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIP-PISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCh----hHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeC-CCCCC
Confidence 4566778888999999999987541 1111 1123556777654 345689999999986 56665
No 157
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=92.03 E-value=0.65 Score=32.96 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=45.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
.+...++-..++..||..++.+.+++-+.-.++..+..|+++++|.+.+++-...+.+.+...
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence 345567778899999999999999999999999999889999999999999999888886544
No 158
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=91.77 E-value=2.3 Score=35.82 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=58.2
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCCC---cEEEE--EcCEE---cCCCCccccCCCCCCCEEEEEEecCCCCCCccc
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQGIPVP---KQTLV--FNGQV---LQDDRDVEHCEILQNSRIQLLVASDNKPQVKTE 82 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~---~q~L~--~~G~~---L~d~~tL~~~~i~~~~~i~l~~~~~~g~~~~~~ 82 (269)
+.+.+-|+.+.||.+|.++++.+.+++.. ..||+ ++++. +..+..+.+. .+...+.+-.-+..-.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~----- 106 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEEL----- 106 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGS-----
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHh-----
Confidence 35788899999999999999999998765 34443 45654 6778888886 3444444432222111
Q ss_pred CCC-C-CceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCC
Q 044874 83 QSS-P-SKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPV 134 (269)
Q Consensus 83 ~~~-~-~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~ 134 (269)
+.. . ....-|.|.......................|..++|++|+++.|+|.
T Consensus 107 ~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 107 NLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp S--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred hcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 111 1 122344444433322112222334455678899999999999999993
No 159
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=91.67 E-value=0.66 Score=32.68 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG 47 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G 47 (269)
++.+.+.++.+..+|.++|.++.++|++...|.|..
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 899999999999999999999999999999999963
No 160
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=91.64 E-value=0.85 Score=32.68 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=38.3
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC---CcEEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV---PKQTLVF 45 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~---~~q~L~~ 45 (269)
.++++...|+.+.+.+.++..+.+|++.|.++.|+.. ....|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 3577888999999999999999999999999999886 4566666
No 161
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=0.79 Score=38.07 Aligned_cols=60 Identities=13% Similarity=0.302 Sum_probs=49.1
Q ss_pred EEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE-ecC-----eee-cCCCccccccCCCCCEEEEecCc
Q 044874 200 PVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI-YKQ-----NVM-DDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 200 ~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~-~~g-----~~L-~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
..+...+.||+++|.+++-.- |.+++.+.|. |.| -.| +++..|..|+..+|-.||++...
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~-----G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLT-----GTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhh-----CCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 346677899999999999986 9999998876 655 245 45679999999999999999643
No 162
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.36 E-value=2.2 Score=29.13 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=42.1
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
...++++...|+.+|-+.+ ++++..-.+..+|..+.. ++-+++|+.|.++--..||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 5677888889999988764 777777778889998853 5567789998887554443
No 163
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=91.06 E-value=1.8 Score=37.48 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=81.5
Q ss_pred ceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeC----C--eeeccCCcccccCCCCCC
Q 044874 88 KKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSS----G--AELQDHRSLRDCELMDNA 161 (269)
Q Consensus 88 ~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~----g--~~L~d~~~L~~y~i~~~~ 161 (269)
..+-||+|....... ..............+|+++-..|.+..|+|++...++|. + ..++...++....+++|+
T Consensus 67 ~~iLlFlK~fDp~~q-~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~Gd 145 (249)
T PF12436_consen 67 DDILLFLKYFDPETQ-TLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGD 145 (249)
T ss_dssp TEEEEEEEEEETTTT-EEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTE
T ss_pred CcEEEEEEeeCCCCC-EEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCC
Confidence 456666666544321 112223444556788999999999999999988777763 2 346779999999999999
Q ss_pred EEEEEEccCCCCCCCCCCCCC-------CcceeEEEEecCC--CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCce
Q 044874 162 EIDVHVRPSPTATSTTSSGMG-------PRKLKLLVLTQCG--NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGY 232 (269)
Q Consensus 162 ~i~l~~~~~~~~~~~~~~~~~-------~~~~~i~V~~~~g--~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q 232 (269)
.|-.-........+...-... -.++.|.+..... ...|.+.++..+|-.+|-++|.++- ++.++..
T Consensus 146 Ii~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l-----~~dP~~l 220 (249)
T PF12436_consen 146 IICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHL-----NVDPEHL 220 (249)
T ss_dssp EEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHH-----TS-GGGE
T ss_pred EEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHH-----CCChHHE
Confidence 988876554200000000000 0135556655322 2589999999999999999999974 8888887
Q ss_pred EEE
Q 044874 233 FFI 235 (269)
Q Consensus 233 ~l~ 235 (269)
+|.
T Consensus 221 r~~ 223 (249)
T PF12436_consen 221 RFF 223 (249)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 164
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=90.99 E-value=1.8 Score=28.43 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=39.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|+|+|. |+ .+++..+.|+.+||.++.. +.--++++|-+..++..| ++++.|.+.-
T Consensus 1 M~I~vN---~k--~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L-----~e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKVN---EK--EIETEENTTLFELRKESKP------DADIVILNGFPTKEDIEL-----KEGDEVFLIK 55 (57)
T ss_pred CEEEEC---CE--EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCcccc-----CCCCEEEEEe
Confidence 777774 44 5677788899999988544 333789999988775554 5588887754
No 165
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=90.58 E-value=1 Score=30.34 Aligned_cols=60 Identities=20% Similarity=0.417 Sum_probs=41.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+| +.. ++.+..|+.+|=+ + ++++.....+.+++.++.-+ ....+ +++||.|.++. .|.||
T Consensus 6 NG-~~~--~~~~~~tl~~ll~---~------l~~~~~~vav~~N~~iv~r~-~~~~~-L~~gD~ieIv~-~VgGG 65 (65)
T PRK05863 6 NE-EQV--EVDEQTTVAALLD---S------LGFPEKGIAVAVDWSVLPRS-DWATK-LRDGARLEVVT-AVQGG 65 (65)
T ss_pred CC-EEE--EcCCCCcHHHHHH---H------cCCCCCcEEEEECCcCcChh-Hhhhh-cCCCCEEEEEe-eccCC
Confidence 45 444 4556677776654 3 27888888889999977544 33456 99999999985 44444
No 166
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=90.29 E-value=2.9 Score=29.82 Aligned_cols=68 Identities=22% Similarity=0.492 Sum_probs=47.8
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
..|+|+| +| +.. +++...||.+|=+.+ +++.....+-.+|.++.- .....+-+++||.|.++.
T Consensus 17 ~~m~I~V---NG-~~~--~~~~~~tl~~LL~~l---------~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~- 79 (84)
T PRK06083 17 VLITISI---ND-QSI--QVDISSSLAQIIAQL---------SLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQ- 79 (84)
T ss_pred ceEEEEE---CC-eEE--EcCCCCcHHHHHHHc---------CCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEE-
Confidence 3466665 45 544 456677887776532 788877888899999953 367788899999999984
Q ss_pred cccCC
Q 044874 264 SVTGG 268 (269)
Q Consensus 264 ~~~~~ 268 (269)
.|.||
T Consensus 80 ~VgGG 84 (84)
T PRK06083 80 AIAGG 84 (84)
T ss_pred EecCC
Confidence 34443
No 167
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=0.12 Score=45.86 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=52.9
Q ss_pred EEEEEcCCCC--EEEEEEcCCCCHHHHHHHHHHHhC--CCCCcEEEEEcCEEcCCCCccccCCCC--CCCEEEEEEecC
Q 044874 2 DVIFEPQRGK--AFTIEVGFFDTVLEIKEKIEKYQG--IPVPKQTLVFNGQVLQDDRDVEHCEIL--QNSRIQLLVASD 74 (269)
Q Consensus 2 ~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~g--i~~~~q~L~~~G~~L~d~~tL~~~~i~--~~~~i~l~~~~~ 74 (269)
.+++|..+.+ .+.|..+..-||++||..++..+- --+..|||+|.|+.|.|...|.+.-.+ ...++||+...+
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcnsk 89 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNSK 89 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 4567776644 556666778899999999998864 223469999999999999999887553 345556555443
No 168
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=90.09 E-value=1.7 Score=29.67 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=41.6
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
++++...|+++|=+++ +++.+...+..+|.+...+ .-.++-+++||.|.++.
T Consensus 12 ~e~~~~~tv~dLL~~l---------~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~ 63 (68)
T COG2104 12 VEIAEGTTVADLLAQL---------GLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVR 63 (68)
T ss_pred EEcCCCCcHHHHHHHh---------CCCCceEEEEECCEEccch-hhhhccccCCCEEEEEE
Confidence 4566678999987655 8998889999999998744 45667889999999984
No 169
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=89.96 E-value=1.7 Score=29.23 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=42.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+| +.+ ++....||.+|-+++ +++.....+-.++.++.-+ ....+-+++||.|.++. .+.||
T Consensus 6 Ng-~~~--~~~~~~tl~~ll~~l---------~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~-~v~GG 66 (66)
T PRK08053 6 ND-QPM--QCAAGQTVHELLEQL---------NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQ-VIAGG 66 (66)
T ss_pred CC-eEE--EcCCCCCHHHHHHHc---------CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEE-EccCC
Confidence 45 454 456677899888654 5555567778899988532 45666799999999985 44444
No 170
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.77 E-value=2.3 Score=29.36 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=44.0
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCC----CCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGI----PVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi----~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
...++++...||.+|.+.+...++- ......+..+|+... .++-+.+|+.|.++-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4667777789999999999987642 234557777898877 34568889999887655443
No 171
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=89.65 E-value=1.9 Score=30.30 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=46.3
Q ss_pred CEEEEEcCC------C-CEEEEEEcCCCCHHHHHHHHHHHhC-CCC--CcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQR------G-KAFTIEVGFFDTVLEIKEKIEKYQG-IPV--PKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~I~~~~g-i~~--~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|+|+|+... | ....++++...|+.+|.+.+..... +.. ..-.+..||+... .++-+++|+.|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 678887542 3 5677788889999999999987652 111 1124566787654 34456779998887
Q ss_pred EecCC
Q 044874 71 VASDN 75 (269)
Q Consensus 71 ~~~~~ 75 (269)
-...|
T Consensus 77 PpvsG 81 (82)
T PLN02799 77 PPISG 81 (82)
T ss_pred CCCCC
Confidence 54444
No 172
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=89.49 E-value=2.9 Score=29.35 Aligned_cols=57 Identities=26% Similarity=0.397 Sum_probs=33.6
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
..||.+|++.+.++......-+.....+.--++. +.. .+.-+++||.|.+++ .|+||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~-~~~----~~~~l~dgDeVai~P-PVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQT-LVS----FDHPLTDGDEVAFFP-PVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCE-EcC----CCCCCCCCCEEEEeC-CCCCC
Confidence 4799999999988642100011112222223343 322 244699999999997 67776
No 173
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=89.37 E-value=1.6 Score=30.13 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=40.5
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG 47 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G 47 (269)
+.|-..+|+...+.+.|++|+.++=+++.++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 456778999999999999999999999999999999988887764
No 174
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=88.99 E-value=2.7 Score=28.15 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=52.0
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhC---CCCCcEEEE-EcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQG---IPVPKQTLV-FNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~g---i~~~~q~L~-~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
+|+...++.++...+-...++-.+.+| -|++...|- -+|..|+-++.++|||+.++.++.+.++..
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence 688888999999888888777766654 555544443 258899999999999999999999887653
No 175
>smart00455 RBD Raf-like Ras-binding domain.
Probab=88.94 E-value=2 Score=29.48 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=40.4
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG 47 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G 47 (269)
..|-..+|+...+.+.|+.|+.++=+.+.++.|+.++.-.++..|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 346678899999999999999999999999999999998888855
No 176
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=88.70 E-value=2.1 Score=28.60 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=38.6
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+++....|+.++=+.+ +++.....+..+|.++.-. .-.++-+++||.|.++.
T Consensus 10 ~~~~~~~tl~~lL~~l---------~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~ 61 (66)
T PRK05659 10 RELPDGESVAALLARE---------GLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVH 61 (66)
T ss_pred EEcCCCCCHHHHHHhc---------CCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEE
Confidence 3566778888776433 7888888888999887644 44556689999999985
No 177
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=88.56 E-value=5 Score=27.67 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=45.3
Q ss_pred EEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEe----c--CeeecCCCccccccCC
Q 044874 190 VLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIY----K--QNVMDDDRSFRWHHVG 253 (269)
Q Consensus 190 V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~----~--g~~L~d~~tL~~~~i~ 253 (269)
|..++| ....++++++.|+.+|=++|+++- ++.... .-|.| + ..-|+.+++|.++...
T Consensus 1 V~llD~-~~~~~~v~~~~t~~~l~~~v~~~l-----~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDG-TTKTFEVDPKTTGQDLLEQVCDKL-----GLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSE-EEEEEEEETTSBHHHHHHHHHHHH-----TTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCC-CcEEEEEcCCCcHHHHHHHHHHHc-----CCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 456787 889999999999999999999975 777544 44667 1 3467889999999887
No 178
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=88.50 E-value=2.6 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=37.2
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN 46 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 46 (269)
+|.++. ++..+.+.++++.|..+|+.+|..+++.+....+|.|.
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~ 46 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ 46 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 345544 67889999999999999999999999988777888886
No 179
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=88.22 E-value=2.5 Score=29.97 Aligned_cols=45 Identities=13% Similarity=0.010 Sum_probs=36.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC-CcEEEEEc
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV-PKQTLVFN 46 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~~ 46 (269)
|+|.+. .+|..+.+.+.++.+..+|+++|++++++.. ....|.|-
T Consensus 1 ~~vK~~-~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~ 46 (82)
T cd06407 1 VRVKAT-YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYL 46 (82)
T ss_pred CEEEEE-eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEE
Confidence 445553 4778999999999999999999999999875 56777774
No 180
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=0.96 Score=44.21 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=103.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE----cCEEc--CCCCccccCCCCCCCEEEEEEecCCCCCCcccCCC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF----NGQVL--QDDRDVEHCEILQNSRIQLLVASDNKPQVKTEQSS 85 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~----~G~~L--~d~~tL~~~~i~~~~~i~l~~~~~~g~~~~~~~~~ 85 (269)
.+.+.|+.-+++..||+.|+...+++.+..+++- +|..+ .++.+|.. ..++++|.+.+-..=. +
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~--~~~~~~iTI~LG~~Lk--------~ 947 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSG--AFQSCFITIKLGAPLK--------S 947 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhh--hcccceEEEEecCcCC--------C
Confidence 5778899999999999999999999999998864 23333 46677776 4466766665533210 1
Q ss_pred CCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhh-hhhcCCC-------CcceEEEe-----CCeeecc-CCc
Q 044874 86 PSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKI-HEMESIP-------VNRLLVQS-----SGAELQD-HRS 151 (269)
Q Consensus 86 ~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I-~~~~gip-------~~~q~L~~-----~g~~L~d-~~~ 151 (269)
...+++|+.=......................||.+.|..+ .....|. ..+.|+.- -|+.+.| +.+
T Consensus 948 dE~~~KI~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~ 1027 (1203)
T KOG4598|consen 948 DEKMMKIILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDT 1027 (1203)
T ss_pred CceeeEEEeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchh
Confidence 11333443221111100011112334455678888886554 2222222 22222221 1344444 333
Q ss_pred ccccCCCCCCEEEEEEccC-CCCCCCCCCCCCCcceeEEEEecCCCeEEEE----Ee-cCCCcHHHHHHHHHHhhhccCC
Q 044874 152 LRDCELMDNAEIDVHVRPS-PTATSTTSSGMGPRKLKLLVLTQCGNKRIPV----EV-NASDNVSELRKELQKLHQRYHF 225 (269)
Q Consensus 152 L~~y~i~~~~~i~l~~~~~-~~~~~~~~~~~~~~~~~i~V~~~~g~~~~~l----~v-~~~~tV~~lK~~i~~~~~~~~~ 225 (269)
+.|.+- ...-++.+.-. ..+. .+.+...+.|+|+-++- .++.+ +| -..+.+.++|+.+.+..
T Consensus 1028 ~eD~~~--~~~~~~~~qE~~deV~----~~k~~~sL~i~vRRW~P-s~~e~~pFQEV~Ld~~~~~E~Re~LS~IS----- 1095 (1203)
T KOG4598|consen 1028 LEDRSY--NWCSHLYLQEITDEVM----IGKPGESLPIMVRRWRP-STVEVNPFQEVLLDANAEVEFREALSKIS----- 1095 (1203)
T ss_pred hhhhhh--hhHHHHHHHHHHhhcc----cCCCCccchhhheeccc-cceecCCceeEEecCcchHHHHHHHHHhc-----
Confidence 333321 00001110000 0000 01112246677766553 33222 11 22567899999999987
Q ss_pred CCCCCceEEE
Q 044874 226 HLPQDGYFFI 235 (269)
Q Consensus 226 ~~p~~~q~l~ 235 (269)
|||.+...+.
T Consensus 1096 gIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1096 GIPVDRLAIT 1105 (1203)
T ss_pred CCchhhhhhh
Confidence 9999875443
No 181
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=88.06 E-value=2.3 Score=28.79 Aligned_cols=56 Identities=29% Similarity=0.368 Sum_probs=40.5
Q ss_pred CCCeEEEEEecCC-CcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 194 CGNKRIPVEVNAS-DNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 194 ~g~~~~~l~v~~~-~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+| +.. ++... .||.+|-+ . +++++....+..+|.++.-+ ....+-+++||.|.++.
T Consensus 6 NG-~~~--~~~~~~~tv~~lL~---~------l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~ 62 (67)
T PRK07696 6 NG-NQI--EVPESVKTVAELLT---H------LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVT 62 (67)
T ss_pred CC-EEE--EcCCCcccHHHHHH---H------cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEE
Confidence 45 444 45544 57776654 3 27888778888999999754 56777899999999984
No 182
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=87.55 E-value=0.88 Score=40.95 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=62.8
Q ss_pred CEEEEEcC--CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCC--CCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQ--RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQD--DRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~--~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d--~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|.++|-.. ..+.+.+.+..+.....++..+....|++.+.--|+|+++.+.. ...+..||+..++++.+.-+..+
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 56666544 67789999999999999999999999999999999999999864 47799999999998887655443
No 183
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=87.42 E-value=4.9 Score=26.90 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=45.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+| +|+.+. +....|+.+|-.. .++++...-+.+++..+..+. ...+ +++|+.|.++--..||
T Consensus 1 m~i~v---NG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 1 MIVVV---NEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CEEEE---CCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 66766 466544 4567788877664 688988899999998775322 2345 8999999988655543
No 184
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=87.32 E-value=6.3 Score=26.24 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=46.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+| +|+. +++....|+.++-.. .++++..--+..+|..+... ...+.-+++|+.|.++--..||
T Consensus 1 m~i~v---NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 1 MNIQL---NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CEEEE---CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence 66666 4664 455667888887754 68888888888999877632 3455667889999987655443
No 185
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=86.66 E-value=4.4 Score=26.89 Aligned_cols=60 Identities=10% Similarity=0.224 Sum_probs=39.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+| +.+ ++....||.+|-+.+ +++ ....+..+|...... .-.+.-+++||.|.++. .|.||
T Consensus 6 Ng-~~~--~~~~~~tl~~ll~~l---------~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~-~v~GG 65 (65)
T PRK06944 6 NQ-QTL--SLPDGATVADALAAY---------GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQ-PVAGG 65 (65)
T ss_pred CC-EEE--ECCCCCcHHHHHHhh---------CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEe-eccCC
Confidence 45 444 566678999888765 343 235666788876532 24455589999999985 44444
No 186
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=86.25 E-value=0.86 Score=33.24 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=25.5
Q ss_pred EEEeCCeeeccCCcccccCCCCCCEEEEEEccCC
Q 044874 138 LVQSSGAELQDHRSLRDCELMDNAEIDVHVRPSP 171 (269)
Q Consensus 138 ~L~~~g~~L~d~~~L~~y~i~~~~~i~l~~~~~~ 171 (269)
.|-|.|++|..+.+|++| +-.+..-.+++++.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiivKl~~ 35 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIVKLQK 35 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEEEecc
Confidence 477999999999999999 555555666666653
No 187
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=85.94 E-value=3.1 Score=39.93 Aligned_cols=65 Identities=17% Similarity=0.404 Sum_probs=42.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCC------CCceEEEec----Ce-eecCC-------------CccccccC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLP------QDGYFFIYK----QN-VMDDD-------------RSFRWHHV 252 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p------~~~q~l~~~----g~-~L~d~-------------~tL~~~~i 252 (269)
..+.++|-.+|||..+|++|-+.-.+ +.| ++..-|.+. |+ +|.|. +||.+|+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk---~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V 278 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYK---NTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKV 278 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTT---TS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT-
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHc---CCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCC
Confidence 45778888899999999998875322 444 233445432 23 55552 48999999
Q ss_pred CCCCEEEEecCc
Q 044874 253 GQGDTIEIFNGS 264 (269)
Q Consensus 253 ~~~~~i~l~~~~ 264 (269)
.+|+++-+++..
T Consensus 279 ~dga~vaLv~k~ 290 (539)
T PF08337_consen 279 PDGATVALVPKQ 290 (539)
T ss_dssp -TTEEEEEEES-
T ss_pred CCCceEEEeecc
Confidence 999999999754
No 188
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=85.86 E-value=2.9 Score=27.43 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=36.3
Q ss_pred EEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 200 PVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 200 ~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.++++...|..+||+++.. +.-.+|++|=...++. -+++||.|++.+
T Consensus 9 ~~~~~~~~tl~~lr~~~k~-----------~~DI~I~NGF~~~~d~-----~L~e~D~v~~Ik 55 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP-----------DADIVILNGFPTKEDI-----ELKEGDEVFLIK 55 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC-----------CCCEEEEcCcccCCcc-----ccCCCCEEEEEe
Confidence 3578888999999987744 2337799999888775 457889998875
No 189
>smart00455 RBD Raf-like Ras-binding domain.
Probab=85.68 E-value=3.8 Score=28.06 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=37.5
Q ss_pred EEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC
Q 044874 189 LVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ 238 (269)
Q Consensus 189 ~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g 238 (269)
.|..++| +...+.+.+..|+.++=+.+.++. |+.++...+.+.|
T Consensus 3 ~v~LP~~-~~~~V~vrpg~tl~e~L~~~~~kr-----~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDN-QRTVVKVRPGKTVRDALAKALKKR-----GLNPECCVVRLRG 46 (70)
T ss_pred EEECCCC-CEEEEEECCCCCHHHHHHHHHHHc-----CCCHHHEEEEEcC
Confidence 4556787 888999999999999999999997 8998887777755
No 190
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=85.57 E-value=8.6 Score=25.74 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=45.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+| +|+.+ ++....|+.+|-+. .+++.....+-.++..+.. ....++-+++|+.|.++--..||
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILF---NDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence 67766 45654 44567789988865 4666666788889988752 33455568889999988665544
No 191
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=83.81 E-value=6.3 Score=28.22 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=35.4
Q ss_pred EEEEcC-CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC
Q 044874 3 VIFEPQ-RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG 47 (269)
Q Consensus 3 i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G 47 (269)
|.||.. +|....+.++++.+..+|.++|.+++++. ...++-|..
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykD 47 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKD 47 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEc
Confidence 445543 68899999999999999999999999995 456666654
No 192
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=83.61 E-value=5.5 Score=28.08 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=36.9
Q ss_pred EEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCee
Q 044874 190 VLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNV 240 (269)
Q Consensus 190 V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~ 240 (269)
||..-. -++.+.|.+.-+..+|+++|.++ +.+|++...|.|+-..
T Consensus 5 vKV~f~-~tIaIrvp~~~~y~~L~~ki~~k-----Lkl~~e~i~LsYkde~ 49 (80)
T cd06406 5 VKVHFK-YTVAIQVARGLSYATLLQKISSK-----LELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEE-EEEEEEcCCCCCHHHHHHHHHHH-----hCCCchhcEEEeccCC
Confidence 343333 38999999999999999999998 4899999999997553
No 193
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=83.31 E-value=4.3 Score=27.99 Aligned_cols=45 Identities=18% Similarity=0.088 Sum_probs=37.2
Q ss_pred EEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC
Q 044874 188 LLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ 238 (269)
Q Consensus 188 i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g 238 (269)
+.|..++| ..-.+.+.+..|+.++=.++.++. |+.++...+.+.|
T Consensus 2 ~~V~LPng-~~t~V~vrpg~ti~d~L~~~c~kr-----~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNG-QRTVVPVRPGMSVRDVLAKACKKR-----GLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCC-CeEEEEECCCCCHHHHHHHHHHHc-----CCCHHHEEEEEec
Confidence 45666788 788899999999999999999987 8988876666554
No 194
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=83.29 E-value=8.6 Score=25.58 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=43.6
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
+|+. ++++...|+.+|.+++ ++++....+..+|+.+.. ....++-+.+|+.|.++-...||
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 4554 4556678999888764 678888888899988754 23445568889999988665554
No 195
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=83.17 E-value=14 Score=30.17 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=44.1
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEEEc---C---EEcCCCCccccCCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLVFN---G---QVLQDDRDVEHCEIL 62 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~---G---~~L~d~~tL~~~~i~ 62 (269)
.+.|...+|....+.+++..|+.++-+.++.+.|++... .-|.+- + ..|+...++.+....
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 467788899999999999999999999999999995422 244432 1 235555555555443
No 196
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=83.00 E-value=8 Score=25.93 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=47.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE-ecCeeecCCCccccccCCCCCEEEEec
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI-YKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~-~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+-..++.+.+....-.+++--+ +.+..+-|++.-.|- -+|..|+-++.+.|||+..|-++++..
T Consensus 6 qPv~VEANvnaPLh~v~akALe--~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsL 70 (76)
T PF10790_consen 6 QPVQVEANVNAPLHPVRAKALE--QSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSL 70 (76)
T ss_pred CceeeecCCCCcchHHHHHHHh--hccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEe
Confidence 5566777777766666655433 234567888765554 579999999999999999999999874
No 197
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=82.97 E-value=8.9 Score=36.92 Aligned_cols=92 Identities=21% Similarity=0.351 Sum_probs=51.2
Q ss_pred EcCCCCccccCCCCCCCEEEEEEecCCCCCCcccCCCCCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhh
Q 044874 49 VLQDDRDVEHCEILQNSRIQLLVASDNKPQVKTEQSSPSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHE 128 (269)
Q Consensus 49 ~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~~~~~~~~~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~ 128 (269)
.|.+++.|.+ .| +..++.+.+...++.. .. |.|+.. ...||.++|++|-+
T Consensus 174 TLnE~~LLre-~i-d~~~ltl~v~~~~~~~---------~~--i~VkVL-----------------dCDTItQVKeKiLD 223 (539)
T PF08337_consen 174 TLNEDKLLRE-QI-DYKTLTLNVVPQEEGS---------EE--IPVKVL-----------------DCDTITQVKEKILD 223 (539)
T ss_dssp -SSCCCB--S-SS--S-EEEEEEECTTTSS---------TC--EEEEEE-----------------TTSBHHHHHHHHHH
T ss_pred eechhhhhcc-cc-ceEEEEEEEEecCCCC---------ce--EEEEEE-----------------ecCcccHHHHHHHH
Confidence 3667777766 44 4566666654443221 22 334332 26799999999976
Q ss_pred hc--CCC------CcceEEEe----CCe-eeccC-------------CcccccCCCCCCEEEEEEccC
Q 044874 129 ME--SIP------VNRLLVQS----SGA-ELQDH-------------RSLRDCELMDNAEIDVHVRPS 170 (269)
Q Consensus 129 ~~--gip------~~~q~L~~----~g~-~L~d~-------------~~L~~y~i~~~~~i~l~~~~~ 170 (269)
.. +.| +++.-|-+ .|+ .|+|. .||+.|+|.+|+++-|+-+..
T Consensus 224 avyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 224 AVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDGATVALVPKQH 291 (539)
T ss_dssp HHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TTEEEEEEES--
T ss_pred HHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCCceEEEeeccc
Confidence 43 555 45555543 223 45543 689999999999999997753
No 198
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=82.22 E-value=5.7 Score=28.10 Aligned_cols=52 Identities=12% Similarity=0.209 Sum_probs=38.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE-ecCeeecCCCccccccCCCCCEEEEec
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI-YKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~-~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
..+.+..+...||+++=+ . +|+|....-++ -+|+.-+= +|-+++||.|.+++
T Consensus 23 ~~~~~~~~~~~tvkd~IE---s------LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDVIE---S------LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CceEEecCCCCcHHHHHH---H------cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 567788888888877754 4 39998886555 46665543 48899999999985
No 199
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=82.17 E-value=3.9 Score=37.30 Aligned_cols=68 Identities=13% Similarity=0.229 Sum_probs=51.0
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecCC-CccccccCCCCCE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDDD-RSFRWHHVGQGDT 257 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d~-~tL~~~~i~~~~~ 257 (269)
.-.|-++..+| ..+....+.+.||.|+|.-|+.... +.+...+.|+ |--+.|.|+ .||++.|+.+--.
T Consensus 305 tTsIQIRLanG-~RlV~~fN~sHTv~DIR~fI~~aRp----~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 305 TTSIQIRLANG-TRLVLKFNHSHTVSDIREFIDTARP----GDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred cceEEEEecCC-ceeeeeccCcccHHHHHHHHHhcCC----CCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 34677788888 6777788889999999999999541 3444345555 788899775 5999999887543
No 200
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=82.16 E-value=14 Score=25.61 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=42.4
Q ss_pred EEEEEEcCC-CCHHHHHHHHHHHhC-CC--CCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 12 AFTIEVGFF-DTVLEIKEKIEKYQG-IP--VPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 12 ~~~l~v~~~-~tV~~lK~~I~~~~g-i~--~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
...+++..+ .|+.+|.+.+..+++ +- .....+..+++...+ +.-+++|+.|.+.-...||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 357788766 899999999998864 11 123466778887764 4567889998887555443
No 201
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=81.87 E-value=6.2 Score=27.06 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=40.2
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC--EEcCCCCccc
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG--QVLQDDRDVE 57 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G--~~L~d~~tL~ 57 (269)
+.|-..+|+...+.+.+..||.++-.++.++.++.++.-.++..| +.|.-+....
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBGG
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCcee
Confidence 456678999999999999999999999999999999887776544 4455444433
No 202
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=81.85 E-value=4.6 Score=28.65 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=35.1
Q ss_pred ecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 203 VNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 203 v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
.....||.+|++++.++..+..............+...+.+. ++-+++||+|.+++ .|+||
T Consensus 24 ~~~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~P-PVsGG 84 (84)
T COG1977 24 LTVGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFFP-PVSGG 84 (84)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEeC-CCCCC
Confidence 344679999999986643110011111111222333444443 45699999999997 67776
No 203
>PRK07440 hypothetical protein; Provisional
Probab=81.84 E-value=14 Score=25.21 Aligned_cols=61 Identities=11% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
+|+. .++....||.+|-. ..++++...-+-.+|..+.. ....++-+++|+.|.++--..||
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 5664 55567788888775 46788888888899988762 33566678889999987655543
No 204
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=80.88 E-value=4.7 Score=34.84 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=46.4
Q ss_pred cceeEEEEecCC-CeEE----EEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC------eeecCCCccccccC
Q 044874 184 RKLKLLVLTQCG-NKRI----PVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ------NVMDDDRSFRWHHV 252 (269)
Q Consensus 184 ~~~~i~V~~~~g-~~~~----~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g------~~L~d~~tL~~~~i 252 (269)
..+-||+|-.+- .+++ .+-|+..++|.+|-..|.++- |+|++.-.++|.- ..++.+.||..+.+
T Consensus 67 ~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~-----g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el 141 (249)
T PF12436_consen 67 DDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERA-----GLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAEL 141 (249)
T ss_dssp TEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHH-----T--TT--EEEEEEEETTEEEE--SSSBHHHTT-
T ss_pred CcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHc-----CCCCCCceEEEEEeccceeeEcCCCCchhhccc
Confidence 356667665432 1233 357899999999999999986 9999887777653 35688899999999
Q ss_pred CCCCEEEE
Q 044874 253 GQGDTIEI 260 (269)
Q Consensus 253 ~~~~~i~l 260 (269)
.+||+|.+
T Consensus 142 ~~GdIi~f 149 (249)
T PF12436_consen 142 QDGDIICF 149 (249)
T ss_dssp -TTEEEEE
T ss_pred CCCCEEEE
Confidence 99997654
No 205
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=80.88 E-value=32 Score=28.87 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=61.8
Q ss_pred ecCCcchHHHHHHhhhhhcCCCCc---ceEEE--eCCee---eccCCcccccCCCCCCEEEEEEccCCCCCCCCCCCCCC
Q 044874 112 DMDVNDTVLRLKEKIHEMESIPVN---RLLVQ--SSGAE---LQDHRSLRDCELMDNAEIDVHVRPSPTATSTTSSGMGP 183 (269)
Q Consensus 112 ~v~~~~TV~~lK~~I~~~~gip~~---~q~L~--~~g~~---L~d~~~L~~y~i~~~~~i~l~~~~~~~~~~~~~~~~~~ 183 (269)
......||.+|-+.++.+.+++.+ ..+|. ++++. +..+.++.+. .+...+++..-+..-. .. .....
T Consensus 39 ~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~--~~-~~~~~ 113 (213)
T PF14533_consen 39 LVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEEL--NL-DDESE 113 (213)
T ss_dssp --BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGS--S---TT--
T ss_pred EECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHh--hc-ccccc
Confidence 344588999999999999998865 45554 56654 5677888776 3444555542222110 00 00000
Q ss_pred cceeEEEEecCC------CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC---c--eEEEecC-----eeecCCC--
Q 044874 184 RKLKLLVLTQCG------NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD---G--YFFIYKQ-----NVMDDDR-- 245 (269)
Q Consensus 184 ~~~~i~V~~~~g------~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~---~--q~l~~~g-----~~L~d~~-- 245 (269)
..+-|.|-.... +.-|.+.|.+.++..++|+.|+.+- |++.. . ..++-.+ ..++|+.
T Consensus 114 ~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rl-----gv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~ 188 (213)
T PF14533_consen 114 GEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRL-----GVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDL 188 (213)
T ss_dssp TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH--------HHHHTT-EEEEEETTEE---EE--TT-T-
T ss_pred cceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHh-----CCChhhheeEEEEEEecCCcccceeccccchh
Confidence 124444433221 1456789999999999999999985 77732 2 3444344 4566654
Q ss_pred ccccc
Q 044874 246 SFRWH 250 (269)
Q Consensus 246 tL~~~ 250 (269)
.|.+.
T Consensus 189 il~~~ 193 (213)
T PF14533_consen 189 ILFDE 193 (213)
T ss_dssp ---GG
T ss_pred hhhhh
Confidence 44443
No 206
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=80.85 E-value=0.5 Score=41.74 Aligned_cols=58 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHH----------HhCCCCCcEE-----EEEcCEEcCCCCccccCCCC-------CCCEEEEEEecCCCC
Q 044874 20 FDTVLEIKEKIEK----------YQGIPVPKQT-----LVFNGQVLQDDRDVEHCEIL-------QNSRIQLLVASDNKP 77 (269)
Q Consensus 20 ~~tV~~lK~~I~~----------~~gi~~~~q~-----L~~~G~~L~d~~tL~~~~i~-------~~~~i~l~~~~~~g~ 77 (269)
+.+|.++|..+++ ++++|.+..+ |.|+.+.+.|.++|.+..-. .+.++.+.+...||.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence 6899999999999 8999999988 99999999899998887543 345555555555554
No 207
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=80.83 E-value=5.9 Score=30.19 Aligned_cols=60 Identities=23% Similarity=0.379 Sum_probs=41.6
Q ss_pred EecC-CCcHHHHHHHHHHhhhccCCCCCC------CceEEEec----------------C-eee---cCCCccccccCCC
Q 044874 202 EVNA-SDNVSELRKELQKLHQRYHFHLPQ------DGYFFIYK----------------Q-NVM---DDDRSFRWHHVGQ 254 (269)
Q Consensus 202 ~v~~-~~tV~~lK~~i~~~~~~~~~~~p~------~~q~l~~~----------------g-~~L---~d~~tL~~~~i~~ 254 (269)
.|+. +.||.+|++.+.+.- ...-|+|| +.+++++. . =+| +++.||.++||++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I-~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n 99 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDI-KTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN 99 (122)
T ss_pred cCCcccCcHHHHHHHHHHHH-hcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence 4676 889999999888753 11123443 33444432 1 366 7889999999999
Q ss_pred CCEEEEec
Q 044874 255 GDTIEIFN 262 (269)
Q Consensus 255 ~~~i~l~~ 262 (269)
+..|-+|.
T Consensus 100 ETEiSfF~ 107 (122)
T PF10209_consen 100 ETEISFFN 107 (122)
T ss_pred cceeeeeC
Confidence 99998885
No 208
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=80.54 E-value=12 Score=26.57 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=44.1
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
+|+.+ +++...||.+|-+. .++++...-+-.+|..+. ....+++-+++|+.|.++--..||
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 45544 44567788877664 578887778889999884 445677788999999988655543
No 209
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=80.18 E-value=13 Score=24.59 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
+|+.+ ++....|+.+|.+. .++++....+..+|..+.. ....++-+++|+.|.++--..||
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 55544 44567789988876 4677777788889987743 23445678899999988665544
No 210
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=79.54 E-value=15 Score=25.85 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCC------C-----CCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQGI------P-----VPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~gi------~-----~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
....++++ ..||.+|.+.+.+++.- . .....+..+|+....+.. .-+++|+.|.++-...||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 35677776 89999999999988641 0 123566778887654421 568889999887655543
No 211
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=79.15 E-value=5.7 Score=30.28 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=41.0
Q ss_pred EEcC-CCCHHHHHHHHHHHh----CCCCC------cEEEEEc-----------------CEEc---CCCCccccCCCCCC
Q 044874 16 EVGF-FDTVLEIKEKIEKYQ----GIPVP------KQTLVFN-----------------GQVL---QDDRDVEHCEILQN 64 (269)
Q Consensus 16 ~v~~-~~tV~~lK~~I~~~~----gi~~~------~q~L~~~-----------------G~~L---~d~~tL~~~~i~~~ 64 (269)
.|+. +.|+.+|++.+.+.. |++|- ..++++. ...| +++.+|.++||.++
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 4777 899999999888763 45443 3444442 2456 67889999999999
Q ss_pred CEEEEEEe
Q 044874 65 SRIQLLVA 72 (269)
Q Consensus 65 ~~i~l~~~ 72 (269)
..|-+...
T Consensus 101 TEiSfF~~ 108 (122)
T PF10209_consen 101 TEISFFNM 108 (122)
T ss_pred ceeeeeCH
Confidence 98877644
No 212
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=79.05 E-value=5.9 Score=35.55 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGGS 269 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 269 (269)
+| +. +++....||.+|-+++ +++.....+..||+++.-+ ...++-+++||.|.|+. .|.||+
T Consensus 6 NG-k~--~el~e~~TL~dLL~~L---------~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~-~VgGGs 67 (326)
T PRK11840 6 NG-EP--RQVPAGLTIAALLAEL---------GLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVH-FVGGGS 67 (326)
T ss_pred CC-EE--EecCCCCcHHHHHHHc---------CCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEE-EecCCC
Confidence 45 54 4566677877765432 7888888889999999643 56777899999999985 566664
No 213
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=78.97 E-value=17 Score=24.48 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=45.6
Q ss_pred CEEEEEcCCCCEEEEEEcCC-CCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFF-DTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~-~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+| +|+.+ ++... .||.+|-+ ..++++...-+-++|..+.. ....++-+++++.|.++--..||
T Consensus 1 m~I~v---NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 1 MNLKI---NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CEEEE---CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 66766 46655 44444 57777665 36888888888899998863 33566678899999987655543
No 214
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.89 E-value=2.5 Score=37.65 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=44.3
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCCcEEEEE---cCEE-----cCCCCccccCCCCCCCEEEEE
Q 044874 16 EVGFFDTVLEIKEKIEKYQGIPVPKQTLVF---NGQV-----LQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 16 ~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~-----L~d~~tL~~~~i~~~~~i~l~ 70 (269)
-++..-||.+||..+..+.|+.+.+++|+| .|+. ...+..|-.|+|++|+.+.+-
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 345567999999999999999999999998 3543 345677888999999987653
No 215
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=78.80 E-value=14 Score=35.01 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=56.8
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCC----CCCcEEEEE---cCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGI----PVPKQTLVF---NGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi----~~~~q~L~~---~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
+|+|...+ +...+-++.+.++.++-..|.+..+- +.....+.+ +|..|+.+.+|.+.+|.||+.+++.-...
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 56776543 45778888999999999999988764 222233333 68899999999999999999999997655
Q ss_pred CCC
Q 044874 75 NKP 77 (269)
Q Consensus 75 ~g~ 77 (269)
..+
T Consensus 83 ~~p 85 (452)
T TIGR02958 83 TEP 85 (452)
T ss_pred CCC
Confidence 444
No 216
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=78.69 E-value=8.3 Score=26.78 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=34.6
Q ss_pred EEEEcCCCCEEE-EEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc
Q 044874 3 VIFEPQRGKAFT-IEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN 46 (269)
Q Consensus 3 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 46 (269)
|.+.. ++.... +.+..+.+..+|+.+|+..++.+....+|.|.
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 34443 344555 89999999999999999999999888899885
No 217
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=78.08 E-value=8 Score=26.31 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=48.5
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCC--CCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGI--PVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
...+.+....||.+|.+.+.....- ......+..+|+...+ ...+.-+.+++.|.++-...||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5678888999999999999888631 2356788899998887 3566667889999987655544
No 218
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=76.92 E-value=19 Score=29.30 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=46.6
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEec---C---eeecCCCccccccCC
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIYK---Q---NVMDDDRSFRWHHVG 253 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~~---g---~~L~d~~tL~~~~i~ 253 (269)
.+.+.|..++| ....+.++++.||+++-..++.+- |++... .-|.+. + .-|+..++|.+...+
T Consensus 3 ~~~~~V~l~dg-~~~~~~~~~~~t~~ev~~~v~~~~-----~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDG-TTLEFEVDSSTTAEELLETVCRKL-----GIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCC-CEEEEEECCCCCHHHHHHHHHHHh-----CCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 35677777888 888999999999999999999975 786543 334432 1 346667788877765
No 219
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=76.24 E-value=11 Score=27.40 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=36.0
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe-cC------eeecCCC---cc--ccccCCCCCEEEEecCcccCC
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY-KQ------NVMDDDR---SF--RWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~-~g------~~L~d~~---tL--~~~~i~~~~~i~l~~~~~~~~ 268 (269)
++++...||.+|=+.+.+.. |...-.|.. .| .+|-+++ .| .++-+++||.|.+++ .+.||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~-------~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P-~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL-------LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIS-TLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC-------chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEEC-CCCCC
Confidence 34445679999999998853 222222221 11 2333332 33 367899999999997 56665
No 220
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=75.81 E-value=20 Score=23.62 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=42.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+| +|+. +++....|+.++-+.+ +++ ....+..+|.....+ ...+.-+++|+.|.++-...||
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccCC
Confidence 66666 4554 4556778999888764 443 345677888876432 2344557889999988655543
No 221
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=74.82 E-value=8.1 Score=27.08 Aligned_cols=36 Identities=6% Similarity=0.029 Sum_probs=32.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN 46 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 46 (269)
-|+.+.+.+..+..+|..+|+++...+++.-+|.|.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 356678899999999999999999999999999995
No 222
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=73.99 E-value=6.6 Score=35.54 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC--CccccccCCCCCEEEEe
Q 044874 195 GNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD--RSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 195 g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~--~tL~~~~i~~~~~i~l~ 261 (269)
..+.+.+.|........|+..+.-- .|++.+.--|+|++..+.++ .+|..||+.++|++.+-
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d-----~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr 74 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKD-----TGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALR 74 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHH-----hCcccchhhcccCCCccccchhhhhhhcccccceeEecc
Confidence 3478889999888999999877664 49999999999999999876 59999999999998775
No 223
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=73.08 E-value=18 Score=25.01 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=38.7
Q ss_pred EEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCE
Q 044874 5 FEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQ 48 (269)
Q Consensus 5 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~ 48 (269)
|-..+|+.-.+.+.+..||.++-.++.++.|+.++.-.++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 44578999999999999999999999999999999888877654
No 224
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=72.93 E-value=19 Score=34.01 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=54.0
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhc-cCCCCCCCceEEE-ecCeeecCCCccccccCCCCCEEEEec
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQR-YHFHLPQDGYFFI-YKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~-~~~~~p~~~q~l~-~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+++|.... +.+.+-++....|.+|-..|-+.-.. ....-++....|. -.|..|+.++||.+.||.|||++++.+
T Consensus 4 RVtV~~~~--~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p 79 (452)
T TIGR02958 4 RVTVLAGR--RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVP 79 (452)
T ss_pred EEEEeeCC--eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEee
Confidence 45665433 67888889999999999998885410 0001123345555 567899999999999999999999986
No 225
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=72.40 E-value=18 Score=26.54 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=33.9
Q ss_pred EEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE
Q 044874 5 FEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF 45 (269)
Q Consensus 5 vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~ 45 (269)
++-.+|.+..+.|+.+.+..+|+.++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 34567899999999999999999999999999866 55555
No 226
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=71.78 E-value=22 Score=24.39 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=34.7
Q ss_pred EEEEEcCCCCEEEEEEc-CCCCHHHHHHHHHHHhCCCCCcEEEEEc
Q 044874 2 DVIFEPQRGKAFTIEVG-FFDTVLEIKEKIEKYQGIPVPKQTLVFN 46 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 46 (269)
+|.++. +|....+.+. .+.|..+|+.+|.++++.+.....+.|.
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 345544 4677888888 9999999999999999988666677774
No 227
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=71.51 E-value=16 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=29.8
Q ss_pred CCCCEEEEEEcC--CCCHHHHHHHHHHHhCCCCCcEEEEE
Q 044874 8 QRGKAFTIEVGF--FDTVLEIKEKIEKYQGIPVPKQTLVF 45 (269)
Q Consensus 8 ~~g~~~~l~v~~--~~tV~~lK~~I~~~~gi~~~~q~L~~ 45 (269)
.+|.+..+.+++ +.+..+|++.|+..++++ ...|-|
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 478889999998 679999999999999999 444444
No 228
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=71.46 E-value=17 Score=24.89 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=35.8
Q ss_pred EEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe--cCeeecCCC
Q 044874 188 LLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY--KQNVMDDDR 245 (269)
Q Consensus 188 i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~--~g~~L~d~~ 245 (269)
+.|..++| ....+.+.+..|+.+.=..+.++. ++.++...+.. ..+.|+-+.
T Consensus 3 ~~v~LP~~-q~t~V~vrpg~ti~d~L~~~~~kr-----~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNG-QRTVVQVRPGMTIRDALSKACKKR-----GLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTT-EEEEEEE-TTSBHHHHHHHHHHTT-----T--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCC-CEEEEEEcCCCCHHHHHHHHHHHc-----CCCHHHEEEEEcCCCccccCCC
Confidence 45666888 888899999999999999999987 88887543332 455555443
No 229
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=71.20 E-value=10 Score=28.99 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=44.2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccC---CCCCCCEEEEEEec
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHC---EILQNSRIQLLVAS 73 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~---~i~~~~~i~l~~~~ 73 (269)
++...+-|+.+.||++|...|..+.++++++.-|+.++..+..+.++++. -=.++..+++...-
T Consensus 40 dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Ys~ 106 (121)
T PTZ00380 40 SKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSVRT 106 (121)
T ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEEcc
Confidence 34444579999999999999999999999885455566555666666543 11235566666543
No 230
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=71.02 E-value=8.4 Score=35.16 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=51.9
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCC-CCcEEEEE--cCEEcC-CCCccccCCCCCCCEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIP-VPKQTLVF--NGQVLQ-DDRDVEHCEILQNSRI 67 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~-~~~q~L~~--~G~~L~-d~~tL~~~~i~~~~~i 67 (269)
.|-|+..+|......++..-||.+++..|.....-. ...+.|++ --+.|. ++.||++.|+.+...+
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 366788899999999999999999999999987643 33566654 477785 5789999999876544
No 231
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=70.70 E-value=52 Score=26.14 Aligned_cols=105 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred CcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCCC----EEEEEEccCCCCCCCCCCCCCCcceeEEE
Q 044874 115 VNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDNA----EIDVHVRPSPTATSTTSSGMGPRKLKLLV 190 (269)
Q Consensus 115 ~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~~----~i~l~~~~~~~~~~~~~~~~~~~~~~i~V 190 (269)
...|.+.|-+.|....|| .|.+-.|..|-..- .||-..|. .-+-.+... ...+.+.|
T Consensus 12 ~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~------------g~~veL~V 72 (153)
T PF02505_consen 12 KPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVG------------GEEVELTV 72 (153)
T ss_pred CHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEEC------------CEEEEEEE
Confidence 367888888888777665 35555565554211 12211111 011111111 12356666
Q ss_pred EecCCCeEEEEEecC-CCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCcccccc
Q 044874 191 LTQCGNKRIPVEVNA-SDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHH 251 (269)
Q Consensus 191 ~~~~g~~~~~l~v~~-~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~ 251 (269)
+. | .+.++++. .+.++.+++.+++ .+|..-. ++.|+-+....|+.||-
T Consensus 73 ~v--G--ri~lele~~~~~ie~I~~iCee-------~lpf~y~--i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 73 KV--G--RIILELEDEEDVIEKIREICEE-------VLPFGYD--IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred EE--e--EEEEEecCcHHHHHHHHHHHHH-------hCCCceE--eeeeEEeccCCchhhhh
Confidence 54 6 67788888 7788888877766 3454321 34799999999999973
No 232
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=69.33 E-value=7.8 Score=28.33 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=25.1
Q ss_pred EEEEcCEEcCCCCccccC-CCCCCCEEEEEEecCCC
Q 044874 42 TLVFNGQVLQDDRDVEHC-EILQNSRIQLLVASDNK 76 (269)
Q Consensus 42 ~L~~~G~~L~d~~tL~~~-~i~~~~~i~l~~~~~~g 76 (269)
.|.|+|+.|..+.+|++| |-.+-+.|.+-+...|.
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~ 38 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQ 38 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCC
Confidence 578999999999999999 32344555555555543
No 233
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=67.06 E-value=24 Score=24.54 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=38.1
Q ss_pred EEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC
Q 044874 190 VLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD 244 (269)
Q Consensus 190 V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~ 244 (269)
|-.++| ...++.|.+.+||.++-+-.+.++ ++.++...|-.+-..++|.
T Consensus 4 V~lPn~-~~~~v~vrp~~tv~dvLe~aCk~~-----~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 4 VCLPDN-QPVLTYLRPGMSVEDFLESACKRK-----QLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EECCCC-ceEEEEECCCCCHHHHHHHHHHhc-----CCChhHheeEEEEEecCCc
Confidence 455677 888999999999999999999987 8888876655444445554
No 234
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.77 E-value=6.7 Score=35.05 Aligned_cols=55 Identities=11% Similarity=0.117 Sum_probs=44.1
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec---Ce-----eecCCCccccccCCCCCEEEE
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK---QN-----VMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~---g~-----~L~d~~tL~~~~i~~~~~i~l 260 (269)
.-|...-||-|++.++..+- |+.+.+++|.|- |+ .++.+..|.+|+|++||.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~V-----Gvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKV-----GVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhcccc-----ccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 45666789999999998874 999999998853 33 455577899999999998765
No 235
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=66.42 E-value=26 Score=25.07 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=33.0
Q ss_pred EEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC---ceEEEe
Q 044874 189 LVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD---GYFFIY 236 (269)
Q Consensus 189 ~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~---~q~l~~ 236 (269)
-.+.++| +.+-+.+.+++.+.+|+++|..+- |+..+ ...|.|
T Consensus 4 K~~~~~G-rvhRf~~~~s~~~~~L~~~I~~Rl-----~~d~~~~~~~~L~Y 48 (86)
T cd06409 4 KFKDPKG-RVHRFRLRPSESLEELRTLISQRL-----GDDDFETHLYALSY 48 (86)
T ss_pred EeeCCCC-CEEEEEecCCCCHHHHHHHHHHHh-----CCccccCCcccEEE
Confidence 3456788 999999999999999999999984 66653 455555
No 236
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=66.24 E-value=12 Score=26.69 Aligned_cols=52 Identities=8% Similarity=0.121 Sum_probs=28.2
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCc----eEEEecCee----ecCCCccccccCCCCCEEEEe
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDG----YFFIYKQNV----MDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~----q~l~~~g~~----L~d~~tL~~~~i~~~~~i~l~ 261 (269)
..|+.+|-+++-..+ +|+.... ..++|..-. -...++|+++||.+|+++.+-
T Consensus 8 ~~TL~~lv~~Vlk~~----Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKK----LGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp T-BHHHHHHHCCCCC----S--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hCcHHHHHHHHHHhc----cCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 568889888775542 4555422 333333322 122479999999999998875
No 237
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=65.86 E-value=37 Score=30.53 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=50.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+| ||+. +++..+.||.+|-+. .+++++..-+.+||+.+. .....++-+++|+.|.++--..||-
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGGs 67 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGGS 67 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCCC
Confidence 67766 4664 455667788887764 688988889999999885 3446677799999999988777664
No 238
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=65.25 E-value=2.1 Score=37.95 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=0.0
Q ss_pred CcchHHHHHHhhhh----------hcCCCCcceE-----EEeCCeeeccCCcccccCCC-------CCCEEEEEEccC
Q 044874 115 VNDTVLRLKEKIHE----------MESIPVNRLL-----VQSSGAELQDHRSLRDCELM-------DNAEIDVHVRPS 170 (269)
Q Consensus 115 ~~~TV~~lK~~I~~----------~~gip~~~q~-----L~~~g~~L~d~~~L~~y~i~-------~~~~i~l~~~~~ 170 (269)
...+|.++|..+++ ..++|.+... |.|+.+.+.|.++|.+..-. .+.++.+.+...
T Consensus 102 attSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVl 179 (309)
T PF12754_consen 102 ATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVL 179 (309)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEE
Confidence 36899999999999 8899999988 99999999999998887533 355566654444
No 239
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=64.61 E-value=17 Score=25.47 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=33.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN 239 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~ 239 (269)
-++.+.+.+.....+|+.+|.++ +.++++.-.|.|+-.
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~k-----L~l~~~~~~LSY~~~ 44 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQA-----LPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHH-----hcCChhhcEEEecCC
Confidence 57888999999999999999997 589999988988643
No 240
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=63.94 E-value=43 Score=22.74 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=45.7
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
.+++.. +|+ .++++...|+.+|-+. .++++..--+.++|..+.. ...++.-+++++.|.++--..|
T Consensus 2 ~m~i~~-ng~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr-~~~~~~~l~~gD~ievv~~v~G 67 (68)
T COG2104 2 PMTIQL-NGK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR-SQWADTILKEGDRIEVVRVVGG 67 (68)
T ss_pred cEEEEE-CCE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccc-hhhhhccccCCCEEEEEEeecC
Confidence 344432 355 4566666899988765 7899888889999998763 3356667778888887754443
No 241
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=63.09 E-value=32 Score=24.29 Aligned_cols=40 Identities=23% Similarity=0.411 Sum_probs=30.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC-CceEEEecCe
Q 044874 195 GNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ-DGYFFIYKQN 239 (269)
Q Consensus 195 g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~-~~q~l~~~g~ 239 (269)
|+..+.+.+.++.+..+|+++|.++- ++.. ....|-|..-
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~-----~~~~~~~f~LkY~Dd 48 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRF-----KLDDMSAFDLKYLDD 48 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCCCCeeEEEEECC
Confidence 33889999999999999999999974 5543 3455656443
No 242
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=62.67 E-value=35 Score=23.42 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec
Q 044874 195 GNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK 237 (269)
Q Consensus 195 g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~ 237 (269)
|+....+.++...+-.+|+.+|+.+- +++.....|-|.
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~-----~~~~~~~~l~Y~ 46 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRF-----GLDNQSFTLKYQ 46 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHh-----CCCCCCeEEEEE
Confidence 33888899999999999999999974 666555666665
No 243
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=60.32 E-value=44 Score=23.31 Aligned_cols=40 Identities=10% Similarity=-0.106 Sum_probs=35.1
Q ss_pred EEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEE
Q 044874 4 IFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTL 43 (269)
Q Consensus 4 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L 43 (269)
.|-..+|...++.+.+++|+.++-+...++.++.|..--|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~L 42 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYL 42 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHhee
Confidence 3567789999999999999999999999999999887544
No 244
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=58.66 E-value=25 Score=34.81 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=37.4
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEE
Q 044874 8 QRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQV 49 (269)
Q Consensus 8 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~ 49 (269)
.+...+.+-++++.|+..++..|+..+|+|...|-|+|.|..
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 356678888999999999999999999999999999998654
No 245
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=58.64 E-value=51 Score=22.94 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCC--CCcEEEE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIP--VPKQTLV 44 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~ 44 (269)
+...++.|+.++|..++-..+.+++++. ++...|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678899999999999999999999987 3444443
No 246
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=57.38 E-value=46 Score=23.99 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=31.4
Q ss_pred CCCCEEEEEEcC-----CCCHHHHHHHHHHHhCCCC-CcEEEEEc
Q 044874 8 QRGKAFTIEVGF-----FDTVLEIKEKIEKYQGIPV-PKQTLVFN 46 (269)
Q Consensus 8 ~~g~~~~l~v~~-----~~tV~~lK~~I~~~~gi~~-~~q~L~~~ 46 (269)
.+|....+.++. +.+..+|+++|++.+.+++ ....|.|.
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 366677777774 7999999999999999987 55677774
No 247
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.98 E-value=3.5 Score=38.38 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 14 TIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 14 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.++.+...|-.++...|++++||+.+..+.+.+|+.|...+||.+-|+..+...++.+.
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 34566777889999999999999999999999999999999999999998877766654
No 248
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=55.53 E-value=24 Score=24.50 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 208 NVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 208 tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+-++.++.+... ++..++ --+++.+|--..+||.+.||.|-+.+.+-+.|
T Consensus 16 s~eE~~~lL~~y------~i~~~q-----LP~I~~~DPv~r~~g~k~GdVvkI~R~S~taG 65 (74)
T PF01191_consen 16 SEEEKKELLKKY------NIKPEQ-----LPKILSSDPVARYLGAKPGDVVKIIRKSETAG 65 (74)
T ss_dssp -HHHHHHHHHHT------T--TTC-----SSEEETTSHHHHHTT--TTSEEEEEEEETTTS
T ss_pred CHHHHHHHHHHh------CCChhh-----CCcccccChhhhhcCCCCCCEEEEEecCCCCC
Confidence 345555555552 676665 46788888888999999999999998776665
No 249
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=55.26 E-value=48 Score=23.65 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=39.3
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEE-Ec-----CEEcCCCCccc
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLV-FN-----GQVLQDDRDVE 57 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~-~~-----G~~L~d~~tL~ 57 (269)
|.|-..+|..-.+.|+..+|+.++-+.+..+.+...+. -.|+ .. .+.++|+..+.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vv 66 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVV 66 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHH
Confidence 44556789999999999999999999999998865433 2332 11 34566765543
No 250
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=54.86 E-value=60 Score=22.60 Aligned_cols=41 Identities=24% Similarity=0.110 Sum_probs=32.1
Q ss_pred EEEcCCCC----EEEEEEcCCCCHHHHHHHHHHHhCC--CCCcEEEE
Q 044874 4 IFEPQRGK----AFTIEVGFFDTVLEIKEKIEKYQGI--PVPKQTLV 44 (269)
Q Consensus 4 ~vk~~~g~----~~~l~v~~~~tV~~lK~~I~~~~gi--~~~~q~L~ 44 (269)
.|-..++. .-++.|++.+|+.++-.++..++++ .+....|+
T Consensus 6 rVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 6 RVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 34444555 8899999999999999999999998 44455663
No 251
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=54.79 E-value=83 Score=23.30 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=42.6
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHh----C--CCCC-cEEEEEcCEE--cCCCCccccCC-----CCCCCEEEEEEec
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQ----G--IPVP-KQTLVFNGQV--LQDDRDVEHCE-----ILQNSRIQLLVAS 73 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~----g--i~~~-~q~L~~~G~~--L~d~~tL~~~~-----i~~~~~i~l~~~~ 73 (269)
...+++.+++++|+.++.+.+..+. + -+++ +..|--.|+. |..+..|.+|. +..+..++|++..
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 4579999999999999999888761 1 2222 4455556653 66677777763 3456666666543
No 252
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=53.75 E-value=44 Score=26.40 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=37.7
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCcccccc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHH 251 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~ 251 (269)
+.+.|+. | .+.+++...+.++.+++.+++ .+|.. +. +..|+-|....|+.||=
T Consensus 67 veL~V~V--G--rI~le~~~~~~i~~I~eiC~e-------~~pF~-y~-i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 67 VELRVQV--G--RIILELEDEDIVEEIEEICKE-------MLPFG-YE-VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred EEEEEEE--e--EEEEEecCHHHHHHHHHHHHh-------hCCCc-eE-eeeeeEeecCCchhhhh
Confidence 5555553 6 667788888899999887777 35532 11 34688999999999873
No 253
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=53.33 E-value=77 Score=23.78 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=40.1
Q ss_pred CcceeEEEEecCCC---eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeee
Q 044874 183 PRKLKLLVLTQCGN---KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVM 241 (269)
Q Consensus 183 ~~~~~i~V~~~~g~---~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L 241 (269)
.++++|..+...+. +.-...|++++|++.+-.-|... ++++++.+.++|=+...
T Consensus 28 ~~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~-----Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 28 IRKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKF-----LKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHH-----hCCcccCeEEEEEcCcc
Confidence 36677777665441 23356899999999999988886 59999998888766544
No 254
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=52.44 E-value=34 Score=24.06 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 208 NVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 208 tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+-++.++.+... ++..++ --+++.+|--..+||.+.||.|-+.+.+-+.|
T Consensus 19 s~eE~~~lL~~y------~i~~~q-----LP~I~~~DPv~r~~g~k~GdVvkI~R~S~taG 68 (79)
T PRK09570 19 SEEEAKKLLKEY------GIKPEQ-----LPKIKASDPVVKAIGAKPGDVIKIVRKSPTAG 68 (79)
T ss_pred CHHHHHHHHHHc------CCCHHH-----CCceeccChhhhhcCCCCCCEEEEEECCCCCC
Confidence 556666666553 666655 36778888889999999999999998766655
No 255
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=51.74 E-value=33 Score=24.60 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=35.8
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQT 42 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~ 42 (269)
.+.|-..+|....+++.-+++..++-+.+..+.|+|.+-+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 45666788999999999999999999999999999976543
No 256
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=51.45 E-value=88 Score=29.05 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=56.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHh--CCCCCcEEEEEc----CEE--cCCCCccccCCCCCCCEEEEEEe
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQ--GIPVPKQTLVFN----GQV--LQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~~q~L~~~----G~~--L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|-+.+|..+|. ..+++.++++.+-|-.++-.-. +..|++..+.-+ |.. +..+.++.+.|+.+|..+.|..+
T Consensus 1 Mi~rfRsk~G~-~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 1 MIFRFRSKEGQ-RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred CeEEEecCCCc-eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEec
Confidence 77888887775 6799999999999998887765 456666666543 332 45689999999999999999884
Q ss_pred c
Q 044874 73 S 73 (269)
Q Consensus 73 ~ 73 (269)
.
T Consensus 80 d 80 (571)
T COG5100 80 D 80 (571)
T ss_pred c
Confidence 3
No 257
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.21 E-value=90 Score=27.37 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=52.5
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecC---CCccccccCCCCCEE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDD---DRSFRWHHVGQGDTI 258 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i 258 (269)
..-.|.|+.++| .++.-+.+...+...++.-++... +...+-+.|. |-.+.+.+ .++|...++-+-++|
T Consensus 209 s~crlQiRl~DG-~Tl~~tF~a~E~L~~VR~wVd~n~-----~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~l 282 (290)
T KOG2689|consen 209 SQCRLQIRLPDG-QTLTQTFNARETLAAVRLWVDLNR-----GDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVL 282 (290)
T ss_pred cceEEEEEcCCC-CeeeeecCchhhHHHHHHHHHHhc-----cCCCCCeeeecCCCceecccccccccHHHhccccchhe
Confidence 345788898999 999999999999999999999875 3333233333 55555533 368888888888876
Q ss_pred EE
Q 044874 259 EI 260 (269)
Q Consensus 259 ~l 260 (269)
.+
T Consensus 283 il 284 (290)
T KOG2689|consen 283 IL 284 (290)
T ss_pred ec
Confidence 65
No 258
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=49.58 E-value=90 Score=21.96 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE-cCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF-NGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
+..+.+.+....||.++-+. .|+|..+-.+++ ||+...- +|-+++|+.|.+.-.
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPV 76 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEec
Confidence 45678888999998877654 899999886655 8886654 366778998887643
No 259
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=49.19 E-value=97 Score=22.25 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=40.7
Q ss_pred eeecCCcchHHHHHHhhhhhcCCCCcceEEEe----CCe-eecc-CCcccccCCCCCCEEEEEEccC
Q 044874 110 PLDMDVNDTVLRLKEKIHEMESIPVNRLLVQS----SGA-ELQD-HRSLRDCELMDNAEIDVHVRPS 170 (269)
Q Consensus 110 ~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~----~g~-~L~d-~~~L~~y~i~~~~~i~l~~~~~ 170 (269)
........||..+...+++.+.| ...-||-- ++. .|.+ +.|+.+-+|..|-+|-+..+..
T Consensus 17 t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 17 TKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred HhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 34455688999999999999999 67788862 333 3544 6799999999999999887765
No 260
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=48.38 E-value=45 Score=23.36 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 21 DTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
.++.+|+.+..++++++....+|+. +|..++|+.=+.. + +..++.|++..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~t--L-p~nT~lm~L~~ 72 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQT--L-PDNTVLMLLEK 72 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCC--S-SSSEEEEEEES
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhh--C-CCCCEEEEECC
Confidence 4899999999999999987777766 5777776533332 3 34555555544
No 261
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=47.86 E-value=49 Score=23.77 Aligned_cols=40 Identities=40% Similarity=0.473 Sum_probs=34.3
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEcCEE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFNGQV 49 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~~ 49 (269)
...+++.|+++.|=.++|+.|+..+|+++... .+.+.|+.
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 36799999999999999999999999998775 45667764
No 262
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=47.33 E-value=42 Score=24.88 Aligned_cols=57 Identities=12% Similarity=-0.017 Sum_probs=38.7
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCc-EEEEEcCEEcCCCCccccC----CCCCCCEEEEEEe
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPK-QTLVFNGQVLQDDRDVEHC----EILQNSRIQLLVA 72 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~G~~L~d~~tL~~~----~i~~~~~i~l~~~ 72 (269)
+-|+.+.||++|...|..+..+++++ .-|+.++..+..+.++++. . .++..+++...
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~elY~~~k-deDGFLY~~Ys 98 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGELYEKYK-DEDGFLYMTYS 98 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHHHHHHB--TTSSEEEEEE
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHHHHHhC-CCCCeEEEEec
Confidence 34789999999999999999998765 4455577666777777653 2 24555666554
No 263
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=47.02 E-value=61 Score=23.43 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=36.8
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc-C------EEcCCCCc---c--ccCCCCCCCEEEEEEecCCC
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN-G------QVLQDDRD---V--EHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~-G------~~L~d~~t---L--~~~~i~~~~~i~l~~~~~~g 76 (269)
++++...||.++-+.+.+.+ +..+.+++.. | ..|-++.. + .++-+++|+.|.+.-...||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 34446789999999998876 3334445443 2 12322222 2 45778899998887655543
No 264
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=46.91 E-value=57 Score=23.23 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=32.4
Q ss_pred CCcchHHHHHHhhhh-hcCCCCc----ceEEEeCCee----eccCCcccccCCCCCCEEEEEEccC
Q 044874 114 DVNDTVLRLKEKIHE-MESIPVN----RLLVQSSGAE----LQDHRSLRDCELMDNAEIDVHVRPS 170 (269)
Q Consensus 114 ~~~~TV~~lK~~I~~-~~gip~~----~q~L~~~g~~----L~d~~~L~~y~i~~~~~i~l~~~~~ 170 (269)
....|+.+|-++|.. +.|+..- .-+++|..-+ --..++|++++|.+|+.+.+.--..
T Consensus 6 ~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~~q 71 (87)
T PF14732_consen 6 TKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDFDQ 71 (87)
T ss_dssp TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEETTT
T ss_pred chhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEcCC
Confidence 457899999887654 6675542 2334443322 1236899999999999998876554
No 265
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=46.49 E-value=73 Score=21.74 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=33.4
Q ss_pred eeecCCcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCCCEEEE
Q 044874 110 PLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDNAEIDV 165 (269)
Q Consensus 110 ~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~~~i~l 165 (269)
........|+++|.....+++|++ ....+.-.|-+.+|=.. |.+|+.+.+
T Consensus 19 GKvi~lP~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~-----IRDgD~L~~ 68 (69)
T PF11834_consen 19 GKVIWLPDSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDV-----IRDGDHLYL 68 (69)
T ss_pred CEEEEcCccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEE-----EEcCCEEEE
Confidence 344455789999999999999997 44445556666665322 345665554
No 266
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=46.38 E-value=75 Score=22.28 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 21 DTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.+..+|+.+..++++++...-+|+. .|..++|+.=+.. +.++. ..|++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t--Lp~nT-~l~~l~ 71 (78)
T cd01615 21 SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT--LPDNT-VLMLLE 71 (78)
T ss_pred CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc--CCCCc-EEEEEC
Confidence 3799999999999999755566655 6888877543333 33344 444443
No 267
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=45.98 E-value=81 Score=29.26 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=50.3
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe----cCee--ecCCCccccccCCCCCEEEE
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY----KQNV--MDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~----~g~~--L~d~~tL~~~~i~~~~~i~l 260 (269)
-+.++...| ...++++++++...|-.+|-..- +.+..+++..++- .|.+ +..++|+.+.|++.|+.++|
T Consensus 2 i~rfRsk~G--~~Rve~qe~d~lg~l~~kll~~~---~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl 76 (571)
T COG5100 2 IFRFRSKEG--QRRVEVQESDVLGMLSPKLLAFF---EVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYL 76 (571)
T ss_pred eEEEecCCC--ceeeeccccchhhhhhHHHHhhh---ccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEE
Confidence 345566666 66789999999999988876632 2366666655553 2331 44567999999999999998
Q ss_pred e
Q 044874 261 F 261 (269)
Q Consensus 261 ~ 261 (269)
-
T Consensus 77 ~ 77 (571)
T COG5100 77 E 77 (571)
T ss_pred E
Confidence 5
No 268
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=45.84 E-value=96 Score=21.89 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=42.1
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc---CE--EcCCCCccccC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN---GQ--VLQDDRDVEHC 59 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~---G~--~L~d~~tL~~~ 59 (269)
+..|+ .+|.+..+.++..-|-+.|+++|...+.+|+...-+.|- |- .|.++.-|.++
T Consensus 2 ~fKv~-~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 2 QFKSS-FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred eEEEE-eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 34553 467778888888889999999999999999988888883 22 24555555544
No 269
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=45.78 E-value=50 Score=33.46 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=47.7
Q ss_pred CCCEEEEEEcC-CCCHHHHHHHHHHHhCCCCCcEEEEEc-CEEcCCCCccccCC-CC-CCCEEEEE
Q 044874 9 RGKAFTIEVGF-FDTVLEIKEKIEKYQGIPVPKQTLVFN-GQVLQDDRDVEHCE-IL-QNSRIQLL 70 (269)
Q Consensus 9 ~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~-G~~L~d~~tL~~~~-i~-~~~~i~l~ 70 (269)
.|.+.+++.+. ..|+.+||.+|+.+.|+....|.++-+ |..+..++.|..|. .. +-+.|++.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 47778887764 679999999999999999888877764 66788888898886 33 34445554
No 270
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=45.69 E-value=50 Score=24.80 Aligned_cols=58 Identities=16% Similarity=0.007 Sum_probs=40.1
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEcCEEcCCCCcccc----CCCCCCCEEEEEEec
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFNGQVLQDDRDVEH----CEILQNSRIQLLVAS 73 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~~L~d~~tL~~----~~i~~~~~i~l~~~~ 73 (269)
+-|+.+.||++|...|.....+.++.- -|+.++.....+.++++ |+- ++..+++....
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd-~DGfLyl~Ys~ 107 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKD-EDGFLYMTYSS 107 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCC-CCCEEEEEEec
Confidence 358999999999999999999887764 44445544455666644 342 35567766553
No 271
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=45.51 E-value=81 Score=23.42 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=28.5
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV 38 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~ 38 (269)
++|-..+|.+..|+|..--+-.++|.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 567778999999999999999999999999999886
No 272
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=45.18 E-value=71 Score=22.41 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHhCCCCCcEEE--EEcCEEcCCCCccccCCCCCCCEEEE
Q 044874 21 DTVLEIKEKIEKYQGIPVPKQTL--VFNGQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~q~L--~~~G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
.+..+|+.+..+.++++...-+| .-+|..++++.=+.. +.+++.+++
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~--LpdnT~lm~ 69 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT--LGDNTHFMV 69 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh--CCCCCEEEE
Confidence 37999999999999998655555 446888876544433 344554443
No 273
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=44.83 E-value=95 Score=21.47 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=34.1
Q ss_pred EEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe
Q 044874 190 VLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN 239 (269)
Q Consensus 190 V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~ 239 (269)
|..++| ..-.+.+.+..||.++=.++.++. |+..+..-+..-|.
T Consensus 4 V~LPdg-~~T~V~vrpG~ti~d~L~kllekR-----gl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDG-STTVVPTRPGESIRDLLSGLCEKR-----GINYAAVDLFLVGG 47 (73)
T ss_pred EECCCC-CeEEEEecCCCCHHHHHHHHHHHc-----CCChhHEEEEEecC
Confidence 445777 666789999999999999999986 88877655554453
No 274
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=42.70 E-value=78 Score=21.95 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 21 DTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
.+..+|+.+..++++++...-+|+. .|..++|+.=+.. +.++. ..|++
T Consensus 19 ~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t--Lp~nt-~l~~L 68 (74)
T smart00266 19 SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT--LPDNT-ELMAL 68 (74)
T ss_pred CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc--CCCCc-EEEEE
Confidence 4799999999999999866566654 6888877644333 33344 44444
No 275
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=42.26 E-value=1.4e+02 Score=22.43 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=30.5
Q ss_pred CEEEEEcCCCC--EEEEEEcCCCCHHHHHHHHHHHhCCC
Q 044874 1 MDVIFEPQRGK--AFTIEVGFFDTVLEIKEKIEKYQGIP 37 (269)
Q Consensus 1 M~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gi~ 37 (269)
|+.++...+++ +-.|.|+..+|+.++-+.+-+++.++
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 67788776665 45688999999999999999999854
No 276
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=42.05 E-value=1.1e+02 Score=22.38 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=42.7
Q ss_pred EEEEEcC-CCCEEEEEEcCCCCHHHHHHHHHHH--hCCCCC----cEEEEEcCEE--cCCCCccccCC-----CCCCCEE
Q 044874 2 DVIFEPQ-RGKAFTIEVGFFDTVLEIKEKIEKY--QGIPVP----KQTLVFNGQV--LQDDRDVEHCE-----ILQNSRI 67 (269)
Q Consensus 2 ~i~vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~--~gi~~~----~q~L~~~G~~--L~d~~tL~~~~-----i~~~~~i 67 (269)
.|.|... ....+++.++.+.|+.++-+.+..+ .+..+. +..|--.|+. |..+..|.+|. +..+..+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 3455555 4668999999999999999998877 222222 3455556653 66788888873 2345555
Q ss_pred EEEE
Q 044874 68 QLLV 71 (269)
Q Consensus 68 ~l~~ 71 (269)
+|.+
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 277
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=42.03 E-value=1.2e+02 Score=21.21 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=26.7
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCC
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPV 38 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~ 38 (269)
+...++.|+.++|..++-..+.++++++.
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~ 43 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTD 43 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 66789999999999999999999999875
No 278
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=41.92 E-value=64 Score=22.52 Aligned_cols=34 Identities=26% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTL 43 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L 43 (269)
.+.+++.|+++.|=.++|+.|+..+++.+..-+-
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3689999999999999999999999998877644
No 279
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.90 E-value=87 Score=27.45 Aligned_cols=68 Identities=9% Similarity=0.177 Sum_probs=52.0
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE--EcCEEcC---CCCccccCCCCCCCEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV--FNGQVLQ---DDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~---d~~tL~~~~i~~~~~i~l 69 (269)
.|-|+..+|+++...++...++.++..-|.-..+...+-..|. |-...+. -.++|...++.+.+++.+
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 4678889999999999999999999999999988765444443 2234442 247789989888887664
No 280
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=41.76 E-value=1.1e+02 Score=21.11 Aligned_cols=61 Identities=21% Similarity=0.163 Sum_probs=35.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhC-CCCCcEEEEEc------CEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQG-IPVPKQTLVFN------GQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~g-i~~~~q~L~~~------G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
+.|..-..++.|+.+|+..|.+++. +-|....+... |--|+.+..+++.= ..+++|.++++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DVf-~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDVF-NSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeeee-ccCCEEEEEec
Confidence 4456667899999999999999975 33444333321 33344444444421 24555555543
No 281
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=41.52 E-value=65 Score=23.25 Aligned_cols=40 Identities=33% Similarity=0.372 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEcCEE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFNGQV 49 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~~ 49 (269)
...+++.|++..|=.++|+.++..+++++..- .+...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 46899999999999999999999999998876 45566653
No 282
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=40.59 E-value=71 Score=22.89 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=32.6
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG 231 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~ 231 (269)
.+.|-.++| ..+.+++..+++.+++-+.+..+- ++|.+.
T Consensus 3 ~L~V~Lpdg-~~i~V~v~~s~~a~~Vleav~~kl-----~L~~e~ 41 (87)
T cd01777 3 ELRIALPDK-ATVTVRVRKNATTDQVYQALVAKA-----GMDSYT 41 (87)
T ss_pred EEEEEccCC-CEEEEEEEEcccHHHHHHHHHHHh-----CCCHHH
Confidence 445555678 999999999999999999999974 899774
No 283
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=39.17 E-value=1.4e+02 Score=22.17 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=38.4
Q ss_pred ceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcc-eEEEeCCeeeccCCcccc
Q 044874 88 KKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNR-LLVQSSGAELQDHRSLRD 154 (269)
Q Consensus 88 ~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~-q~L~~~g~~L~d~~~L~~ 154 (269)
.+|.|.|........ ..............||.++...|+.+..+++++ .-|+.++..+..+.++++
T Consensus 15 ~~IPVIvEr~~~s~l-p~ldk~KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 15 DKIPVIVERYPKSKL-PDLDKKKFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp TEEEEEEEE-TTSSS----SSSEEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred CccEEEEEEccCCCh-hhcCccEEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 456666655433320 111113334557889999999999999998765 445557655556666654
No 284
>PRK01777 hypothetical protein; Validated
Probab=39.15 E-value=1.5e+02 Score=21.53 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=34.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC--c-----eEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD--G-----YFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~--~-----q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
....+++....||.++=+.. |++.. . ..+.-+|+.-.- ++-+++||.|.|++
T Consensus 17 ~~~~l~vp~GtTv~dal~~s---------gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIyr 75 (95)
T PRK01777 17 YLQRLTLQEGATVEEAIRAS---------GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIYR 75 (95)
T ss_pred EEEEEEcCCCCcHHHHHHHc---------CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEec
Confidence 45678999999999886654 45443 1 233334555433 45789999999985
No 285
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=38.41 E-value=36 Score=19.65 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=15.7
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCc
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDG 231 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~ 231 (269)
..||.+||+.+..+ |+|...
T Consensus 3 ~l~v~eLk~~l~~~------gL~~~G 22 (35)
T PF02037_consen 3 KLTVAELKEELKER------GLSTSG 22 (35)
T ss_dssp TSHHHHHHHHHHHT------TS-STS
T ss_pred cCcHHHHHHHHHHC------CCCCCC
Confidence 57899999999986 788764
No 286
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=38.25 E-value=1.3e+02 Score=20.52 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=28.7
Q ss_pred eEEE-EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec
Q 044874 197 KRIP-VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK 237 (269)
Q Consensus 197 ~~~~-l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~ 237 (269)
.... +.+....+..+|+.+|.++- +.+.....|.|.
T Consensus 11 ~~~~~~~~~~~~s~~~L~~~i~~~~-----~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 11 DIRRIISLPSDVSFDDLRSKIREKF-----GLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEEEECSTSHHHHHHHHHHHHH-----TTSTSSEEEEEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHh-----CCCCccEEEEee
Confidence 4444 88998999999999999975 776566777775
No 287
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=38.24 E-value=1.6e+02 Score=21.57 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=41.8
Q ss_pred cCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCC-cEEEE-E-cC--EEcCC-CC-------ccccCCCCCCCEEEEEE
Q 044874 7 PQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVP-KQTLV-F-NG--QVLQD-DR-------DVEHCEILQNSRIQLLV 71 (269)
Q Consensus 7 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~-~-~G--~~L~d-~~-------tL~~~~i~~~~~i~l~~ 71 (269)
..++...++.+..+.||.++-..+..++.++.. ..+|+ . +| ++|.. ++ .|...|..+.+-++.+.
T Consensus 9 r~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~lG 86 (97)
T cd01775 9 RSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIEDIG 86 (97)
T ss_pred ecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHHhC
Confidence 346667889999999999999999999987763 33333 3 33 34532 22 24455555555554443
No 288
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=37.07 E-value=81 Score=22.35 Aligned_cols=64 Identities=11% Similarity=0.265 Sum_probs=43.3
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCC---CCCceEEEecCe-eecC------CCccccccCCCCCEEEEecCccc
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHL---PQDGYFFIYKQN-VMDD------DRSFRWHHVGQGDTIEIFNGSVT 266 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~---p~~~q~l~~~g~-~L~d------~~tL~~~~i~~~~~i~l~~~~~~ 266 (269)
++++++.|..++-+.++++. ..++.= ....-.|++.+- .|++ +++|.+- +.+|+.|+|-...++
T Consensus 1 i~v~~~~TL~~lid~L~~~~-~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~~lp 74 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKP-EFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDPTLP 74 (84)
T ss_dssp EEESTTSBSHHHHHHHHHST-TT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEETTES
T ss_pred CCcCccchHHHHHHHHHhCh-hhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECCCCc
Confidence 57899999999999999963 112221 233445555444 2332 5799998 999999999876554
No 289
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.67 E-value=83 Score=22.36 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTL 43 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L 43 (269)
.+.+++.|++..+=.++|+.|+..+++.+..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 4689999999999999999999999998877654
No 290
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=36.42 E-value=91 Score=22.70 Aligned_cols=38 Identities=29% Similarity=0.294 Sum_probs=32.1
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEE-EEEcC
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQT-LVFNG 47 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~~G 47 (269)
.+.+++.|+++.|=.++|+.+++.+|+-+..-+ |...|
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~ 59 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKG 59 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCC
Confidence 478999999999999999999999999887764 44444
No 291
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=36.12 E-value=1.7e+02 Score=21.30 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=40.7
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCC-CC-ceEEEecCe--eecCCCcccccc
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLP-QD-GYFFIYKQN--VMDDDRSFRWHH 251 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p-~~-~q~l~~~g~--~L~d~~tL~~~~ 251 (269)
..+.|.|...+....+++.++.++|+++|-+++-.+.... ...+ .. .+.|-=.|+ -|..+..|.+|.
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~-~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKD-LLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHH-TT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhh-cCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 4577777776455889999999999999998876652110 1111 11 344443443 566677887775
No 292
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=35.05 E-value=17 Score=33.04 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=42.0
Q ss_pred ecCCCeEEEEEec-CCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccc
Q 044874 192 TQCGNKRIPVEVN-ASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFR 248 (269)
Q Consensus 192 ~~~g~~~~~l~v~-~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~ 248 (269)
..+| ....+.+. .+..+..||.++.+.. ++++..|.+.|.|..|.|+.++.
T Consensus 289 ~~dg-~~~~~~~~~~~~~~~~~k~k~~~~~-----~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADG-QVIKITVQSLSENVASLKEKIADES-----QIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCC-ceeeecccccccccccccccccccc-----ccchhheeeccCCcccCcccccc
Confidence 4455 66666666 7889999999999965 99999999999999999986553
No 293
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=35.00 E-value=14 Score=33.44 Aligned_cols=38 Identities=42% Similarity=0.632 Sum_probs=34.1
Q ss_pred CcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcc
Q 044874 115 VNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSL 152 (269)
Q Consensus 115 ~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L 152 (269)
....|..+|.++.+..+|++..|.+.+.|..|.|++.+
T Consensus 302 ~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 302 LSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred ccccccccccccccccccchhheeeccCCcccCccccc
Confidence 56778899999999999999999999999999998544
No 294
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=34.86 E-value=22 Score=24.16 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=23.8
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
++.+..+.+..+-+.++.. |+ +..|...|+++||+|.+-
T Consensus 25 ~~~~~~e~~~rf~~~L~~~------Gv----------------~~~L~~~G~~~GD~V~Ig 63 (69)
T PF09269_consen 25 TNFDDEESLRRFQRKLKKM------GV----------------EKALRKAGAKEGDTVRIG 63 (69)
T ss_dssp EEE-TGGGHHHHHHHHHHT------TH----------------HHHHHTTT--TT-EEEET
T ss_pred cCCCCHHHHHHHHHHHHHC------CH----------------HHHHHHcCCCCCCEEEEc
Confidence 3455566667776666663 22 357899999999999874
No 295
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=34.15 E-value=1.7e+02 Score=20.82 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=27.4
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLH 220 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~ 220 (269)
-|.|-..+| ....+.|+...|+.++=+.+.++.
T Consensus 4 vvkv~~~Dg-~sK~l~V~~~~Ta~dV~~~L~~K~ 36 (85)
T cd01787 4 VVKVYSEDG-ASKSLEVDERMTARDVCQLLVDKN 36 (85)
T ss_pred EEEEEecCC-CeeEEEEcCCCcHHHHHHHHHHHh
Confidence 344444677 888999999999999999999987
No 296
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=34.00 E-value=91 Score=23.39 Aligned_cols=39 Identities=5% Similarity=0.138 Sum_probs=33.5
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEc
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVL 50 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L 50 (269)
.-...|++++|++.+-..+....+++...+-++|=....
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 455678999999999999999999999999888865544
No 297
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=33.85 E-value=23 Score=24.16 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.2
Q ss_pred cccccCCCCCEEEEec
Q 044874 247 FRWHHVGQGDTIEIFN 262 (269)
Q Consensus 247 L~~~~i~~~~~i~l~~ 262 (269)
-..+-+++|+|+|+|+
T Consensus 7 ~ksi~LkDGstvyiFK 22 (73)
T PF11525_consen 7 KKSIPLKDGSTVYIFK 22 (73)
T ss_dssp EEEEEBTTSEEEEEET
T ss_pred heeEecCCCCEEEEEc
Confidence 3566789999999996
No 298
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=33.79 E-value=98 Score=21.70 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=30.6
Q ss_pred eeecCCcchHHHHHHhhhhhcCCCCcceEEE--eCCeeeccC
Q 044874 110 PLDMDVNDTVLRLKEKIHEMESIPVNRLLVQ--SSGAELQDH 149 (269)
Q Consensus 110 ~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d~ 149 (269)
........+..+|+.+.++++++|....+|+ -.|.+.+|+
T Consensus 14 ~k~GV~A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddE 55 (78)
T cd01615 14 RKKGVAASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDE 55 (78)
T ss_pred eeEEEEcCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccH
Confidence 3445568899999999999999976666655 478888664
No 299
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=32.51 E-value=81 Score=21.50 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCC
Q 044874 19 FFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQD 52 (269)
Q Consensus 19 ~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d 52 (269)
..+|+++|.+..++++|++ ....+.-+|...+|
T Consensus 24 lP~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdD 56 (69)
T PF11834_consen 24 LPDSLEELLKIASEKFGFS-ATKVLNEDGAEIDD 56 (69)
T ss_pred cCccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeE
Confidence 3479999999999999997 33334445665554
No 300
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=32.34 E-value=29 Score=23.60 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.6
Q ss_pred CCccccccCCCCCEEEEe
Q 044874 244 DRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 244 ~~tL~~~~i~~~~~i~l~ 261 (269)
+..|...|+++||+|.+-
T Consensus 46 ~~~L~~~G~~~GD~V~Ig 63 (69)
T TIGR03595 46 EDALRKAGAKDGDTVRIG 63 (69)
T ss_pred HHHHHHcCCCCCCEEEEc
Confidence 358999999999999874
No 301
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=32.30 E-value=68 Score=22.45 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=18.0
Q ss_pred EEEEEcCCCCHHHHHHHHHHHh
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQ 34 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~ 34 (269)
++++++.+.|+.++|+.+-++-
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A 23 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEA 23 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHG
T ss_pred eEEEccCcCcHHHHHHHHHHHH
Confidence 5788999999999999887764
No 302
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.96 E-value=1.3e+02 Score=21.25 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHhCCCCCc--EEEE--EcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 21 DTVLEIKEKIEKYQGIPVPK--QTLV--FNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~--q~L~--~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.+..+|+.+..+++.++... -+|+ -+|..++|+.=+.. +.+++ ..|++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~t--Lp~nT-~l~~L~ 73 (80)
T cd06536 21 SSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFLC--LPPNT-KFVLLA 73 (80)
T ss_pred CCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHhh--CCCCc-EEEEEC
Confidence 37999999999999998432 4554 46888877644433 33444 444443
No 303
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=31.41 E-value=1.3e+02 Score=21.23 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHhCCCCCcEEEE--EcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 21 DTVLEIKEKIEKYQGIPVPKQTLV--FNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
.+..+|+.+..+...++.. -+|. -+|..++++.=+.. +.+++.+++.
T Consensus 21 ~sL~EL~~K~~~~L~~~~~-~~lvLeeDGT~Vd~EeyF~t--LpdnT~lm~L 69 (81)
T cd06537 21 ASLQELLAKALETLLLSGV-LTLVLEEDGTAVDSEDFFEL--LEDDTCLMVL 69 (81)
T ss_pred cCHHHHHHHHHHHhCCCCc-eEEEEecCCCEEccHHHHhh--CCCCCEEEEE
Confidence 3799999999999998733 4444 36888876544333 3445544433
No 304
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=31.29 E-value=2e+02 Score=20.56 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=42.6
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHh-C--CCC--C-cEEEEEcC--EEcCCCCccccCCCCCCCEEEEEE
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQ-G--IPV--P-KQTLVFNG--QVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~-g--i~~--~-~q~L~~~G--~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
...+.|+..+|+.++=++++... | +++ . ..++.++| ..+..+.++++.||.+-..|.+..
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 35578999999999999998763 4 333 2 45777888 889999999999999988888765
No 305
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=31.08 E-value=1e+02 Score=21.41 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=30.3
Q ss_pred eecCCcchHHHHHHhhhhhcCCCCcceEEE--eCCeeeccC
Q 044874 111 LDMDVNDTVLRLKEKIHEMESIPVNRLLVQ--SSGAELQDH 149 (269)
Q Consensus 111 ~~v~~~~TV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d~ 149 (269)
.......+..+|+.+.++++++|....+|. -.|.+.+|+
T Consensus 13 k~GV~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddE 53 (74)
T smart00266 13 RKGVAASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDE 53 (74)
T ss_pred eEEEEcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccH
Confidence 444567899999999999999996665554 478888764
No 306
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=30.57 E-value=1.2e+02 Score=21.62 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=37.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEcCEEc-CCCCccccC---CCCCCCEEEEEEe
Q 044874 14 TIEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFNGQVL-QDDRDVEHC---EILQNSRIQLLVA 72 (269)
Q Consensus 14 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~~L-~d~~tL~~~---~i~~~~~i~l~~~ 72 (269)
.+-|+.+.|++++..-|.++.++.+++- -|+.+...+ ..+.++++. - ..+..+.+...
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys 81 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC 81 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence 3458999999999999999999887663 444454323 344555432 2 34566665544
No 307
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=30.42 E-value=67 Score=18.36 Aligned_cols=20 Identities=45% Similarity=0.559 Sum_probs=16.4
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCc
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDG 231 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~ 231 (269)
..+|.+||+.+.+. |+|.+.
T Consensus 3 ~l~~~~Lk~~l~~~------gl~~~G 22 (35)
T smart00513 3 KLKVSELKDELKKR------GLSTSG 22 (35)
T ss_pred cCcHHHHHHHHHHc------CCCCCC
Confidence 56899999999885 788754
No 308
>PRK01777 hypothetical protein; Validated
Probab=30.34 E-value=2.1e+02 Score=20.70 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=41.0
Q ss_pred CEEEEEc-CC--CCEEEEEEcCCCCHHHHHHHHHHHhCCCCC--c-----EEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEP-QR--GKAFTIEVGFFDTVLEIKEKIEKYQGIPVP--K-----QTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~-~~--g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~--~-----q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|+|.|-. .. .....+++....||.++-.+ .|++.. . -.+.-+|+.... +.-+++|+.|.+.
T Consensus 4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIy 74 (95)
T PRK01777 4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIY 74 (95)
T ss_pred eEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEe
Confidence 4555643 22 33467788999999987766 466544 2 245557776654 3456679998877
Q ss_pred EecC
Q 044874 71 VASD 74 (269)
Q Consensus 71 ~~~~ 74 (269)
-.+.
T Consensus 75 rPL~ 78 (95)
T PRK01777 75 RPLL 78 (95)
T ss_pred cCCC
Confidence 5443
No 309
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=30.06 E-value=70 Score=24.45 Aligned_cols=55 Identities=5% Similarity=0.004 Sum_probs=38.0
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccc----cccCCCCCEEEEe
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFR----WHHVGQGDTIEIF 261 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~----~~~i~~~~~i~l~ 261 (269)
+-|+.+.||.++...|+.+- ++++++..|.-++..+..+.++. .|. .++..+|+.
T Consensus 45 llVP~d~tV~qF~~iIRkrl-----~l~~~k~flfVnn~lp~~s~~mg~lYe~~K-DeDGFLYi~ 103 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQAL-----GTSAKKVTLAIEGSTPAVTATVGDIADACK-RDDGFLYVS 103 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHc-----CCChhHEEEEECCccCCccchHHHHHHHhc-CCCCeEEEE
Confidence 35889999999999999974 89998854445555555554443 344 346667775
No 310
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=29.66 E-value=35 Score=23.83 Aligned_cols=39 Identities=5% Similarity=0.105 Sum_probs=20.2
Q ss_pred HHHhhhccCCCCCCCceEEE---ecCeeecCCCccccccCCCCCEEEEec
Q 044874 216 LQKLHQRYHFHLPQDGYFFI---YKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 216 i~~~~~~~~~~~p~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+++- .+.++...|. .++.+|+=+++|.++||++ +|...
T Consensus 3 IC~KC-----Efdp~htvLLrD~~s~e~LdLsKSLndlGirE---LYA~D 44 (79)
T PF09469_consen 3 ICEKC-----EFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE---LYAWD 44 (79)
T ss_dssp HHHHT-----T--TTSEEEES-SS---B--TTS-HHHHT-SE---EEEEE
T ss_pred ccccc-----ccCcceEEEeecCCCCCcccccccHHHhhHHH---HHhhc
Confidence 56654 4555555555 4677899999999999985 55543
No 311
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=29.60 E-value=1.2e+02 Score=21.63 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=32.0
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCC-CCCcEEEEE--cC--EEcCCC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGI-PVPKQTLVF--NG--QVLQDD 53 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi-~~~~q~L~~--~G--~~L~d~ 53 (269)
.-++.|.|..|++++=..++.++.+ .|+...|++ +| ..|.|+
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 4678999999999999999999996 455566654 34 356654
No 312
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=29.52 E-value=2e+02 Score=19.98 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=48.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc-CEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 14 TIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN-GQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 14 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~-G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
.+.|........+-+-.++++.+|+..--++.+ |-=+...++-..+-++.|+.+.++-|.+
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 457777777777777888899999887777665 5557788888888889999998887765
No 313
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=29.19 E-value=1.8e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=27.0
Q ss_pred eEEEEEec-CCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC
Q 044874 197 KRIPVEVN-ASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ 238 (269)
Q Consensus 197 ~~~~l~v~-~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g 238 (269)
....+.+. ...+..+|+.+|+++- +++.....+-|..
T Consensus 10 ~~~~~~~~~~~~s~~~L~~~i~~~~-----~~~~~~~~l~y~D 47 (81)
T cd05992 10 EIRRFVVVSRSISFEDLRSKIAEKF-----GLDAVSFKLKYPD 47 (81)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHh-----CCCCCcEEEEeeC
Confidence 56667777 8999999999999974 6654445555543
No 314
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=28.11 E-value=1.3e+02 Score=23.88 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=30.3
Q ss_pred EEEEEcC-CCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccC
Q 044874 13 FTIEVGF-FDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHC 59 (269)
Q Consensus 13 ~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~ 59 (269)
+.+++.. .+.+.++++...+.+.++. . +.-|+-+....|+.||
T Consensus 77 i~lele~~~~~ie~I~~iCee~lpf~y---~-i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 77 IILELEDEEDVIEKIREICEEVLPFGY---D-IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEecCcHHHHHHHHHHHHHhCCCce---E-eeeeEEeccCCchhhh
Confidence 5577777 6777777776666554432 2 2358899999999998
No 315
>CHL00030 rpl23 ribosomal protein L23
Probab=27.87 E-value=1.5e+02 Score=21.50 Aligned_cols=40 Identities=25% Similarity=0.240 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEE-EEEcCE
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQT-LVFNGQ 48 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~~G~ 48 (269)
....+++.|+++.|=.++|++|+..+++.+..-+ +...|+
T Consensus 18 e~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 18 EKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred HCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 3578999999999999999999999999877654 344444
No 316
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.64 E-value=2.3e+02 Score=20.29 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=26.0
Q ss_pred eEEEEEec-----CCCcHHHHHHHHHHhhhccCCCCCCC-ceEEEecC
Q 044874 197 KRIPVEVN-----ASDNVSELRKELQKLHQRYHFHLPQD-GYFFIYKQ 238 (269)
Q Consensus 197 ~~~~l~v~-----~~~tV~~lK~~i~~~~~~~~~~~p~~-~q~l~~~g 238 (269)
....+.++ ++.+..+|+++|.++ +.++++ ...|.|..
T Consensus 10 ~~rRf~l~~~~~~~d~~~~~L~~kI~~~-----f~l~~~~~~~l~Y~D 52 (91)
T cd06398 10 TLRRFTFPVAENQLDLNMDGLREKVEEL-----FSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEEEeccccccCCCCHHHHHHHHHHH-----hCCCCCCcEEEEEEC
Confidence 55555555 468999999999997 478873 45555653
No 317
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=27.54 E-value=1.7e+02 Score=20.55 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhCCCCCcEEEE--EcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 21 DTVLEIKEKIEKYQGIPVPKQTLV--FNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~q~L~--~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.+..+|+.+..++++++. .-+|+ -.|..++|+.=+.. +.++ ++.|++.
T Consensus 21 ~sL~eL~~K~~~~l~l~~-~~~lvL~eDGT~Vd~EeyF~t--Lp~n-t~l~vL~ 70 (79)
T cd06538 21 DSLEDLLNKVLDALLLDC-ISSLVLDEDGTGVDTEEFFQA--LADN-TVFMVLG 70 (79)
T ss_pred CCHHHHHHHHHHHcCCCC-ccEEEEecCCcEEccHHHHhh--CCCC-cEEEEEC
Confidence 479999999999999963 34443 46888876544333 3334 4444443
No 318
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.29 E-value=53 Score=30.92 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=43.6
Q ss_pred CcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCCCEEEE
Q 044874 115 VNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDNAEIDV 165 (269)
Q Consensus 115 ~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~~~i~l 165 (269)
...|=.++...|.++.||+.+....+-+|+.|.-.+||.+-+++.+....+
T Consensus 58 L~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv 108 (568)
T KOG2561|consen 58 LHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMV 108 (568)
T ss_pred cccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHH
Confidence 355678899999999999999999999999999999999999877654433
No 319
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=27.18 E-value=82 Score=22.08 Aligned_cols=22 Identities=27% Similarity=0.131 Sum_probs=18.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHHh
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQ 34 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~ 34 (269)
+.+.++.+.|+.++|+.+-+.-
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A 23 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQA 23 (78)
T ss_pred eeEEccccccHHHHHHHHHHHH
Confidence 4688999999999999987764
No 320
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=25.55 E-value=2.3e+02 Score=19.47 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=33.5
Q ss_pred EEEcC-CCCHHHHHHHHHHHhC-----CCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 15 IEVGF-FDTVLEIKEKIEKYQG-----IPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 15 l~v~~-~~tV~~lK~~I~~~~g-----i~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
++++. ..||.+|++.+.+++. ......++..|+....+ +.-+.+|+.|-+.-...|
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsG 80 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCC
Confidence 44443 4799999999988762 11222344445543322 345778888887754444
No 321
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=25.16 E-value=2.4e+02 Score=19.47 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=37.2
Q ss_pred eeEEEEecCCCe--EEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE------ecCeeecCCCccccccCCCCCE
Q 044874 186 LKLLVLTQCGNK--RIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI------YKQNVMDDDRSFRWHHVGQGDT 257 (269)
Q Consensus 186 ~~i~V~~~~g~~--~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~------~~g~~L~d~~tL~~~~i~~~~~ 257 (269)
++|+.|...+.. .-.+.+....||.|+=.+|..-- ...-.+-.+ |.|+... .+|-+++||+
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di------~~~f~~A~v~g~s~~~~gq~Vg-----l~~~L~d~Dv 70 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL------VKQFKYALVWGSSVKHSPQRVG-----LDHVLEDEDV 70 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH------HHhCCeeEEeccCCcCCCeECC-----CCCEecCCCE
Confidence 456666554311 22466788999999999998511 011112223 3444333 3456788898
Q ss_pred EEEe
Q 044874 258 IEIF 261 (269)
Q Consensus 258 i~l~ 261 (269)
|.++
T Consensus 71 VeI~ 74 (75)
T cd01666 71 VQIV 74 (75)
T ss_pred EEEe
Confidence 8875
No 322
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=25.09 E-value=2.1e+02 Score=22.72 Aligned_cols=44 Identities=23% Similarity=0.151 Sum_probs=30.5
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCC
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCE 60 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~ 60 (269)
+.+++...+.+.++++...+.+-++. =+.-|+-+....|+.||-
T Consensus 76 I~le~~~~~~i~~I~eiC~e~~pF~y----~i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 76 IILELEDEDIVEEIEEICKEMLPFGY----EVRVGKFLRTKPTVTDYI 119 (150)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCce----EeeeeeEeecCCchhhhh
Confidence 45666677788888877666655442 134577888899998883
No 323
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=24.18 E-value=1.4e+02 Score=20.92 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 208 NVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 208 tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+-++.|+.+.+. ++.+++ --++-.+|---...|-+.||.|-+++.+-|.|
T Consensus 22 s~eE~~~vLk~l------~i~~~q-----LPkI~~~DPva~~lgak~GdvVkIvRkS~TaG 71 (80)
T COG2012 22 SEEEAKEVLKEL------GIEPEQ-----LPKIKASDPVAKALGAKPGDVVKIVRKSPTAG 71 (80)
T ss_pred CHHHHHHHHHHh------CCCHHH-----CCcccccChhHHHccCCCCcEEEEEecCCCCC
Confidence 345566666663 777766 35556666667888999999999998887776
No 324
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=87 Score=28.40 Aligned_cols=65 Identities=11% Similarity=-0.009 Sum_probs=52.1
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHh-CCCCCcEEEEEcC---EEc--CCCCccccCCCCCCCE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQ-GIPVPKQTLVFNG---QVL--QDDRDVEHCEILQNSR 66 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~L~~~G---~~L--~d~~tL~~~~i~~~~~ 66 (269)
.|-||..+|+.....+.+.++|..|=.-++... |.+-+..+|+++- +.| ..+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 377899999887777788999999988877764 6777788999875 555 4578999999998765
No 325
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=23.50 E-value=63 Score=21.15 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHH
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEK 32 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~ 32 (269)
|.|++.+.+|+.|.++...-.--.-|+.+++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 78999999999999986544444556666654
No 326
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=1.3e+02 Score=27.30 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=50.9
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC---eeecC--CCccccccCCCCCEE
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ---NVMDD--DRSFRWHHVGQGDTI 258 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g---~~L~d--~~tL~~~~i~~~~~i 258 (269)
.|.|+.++| +......-.+++|.-|..-+.... -+.+-..+.|+++- +.|.+ +.||.++||.+..++
T Consensus 279 ~i~vR~pdG-~R~qrkf~~sepv~ll~~~~~s~~----dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~~ 350 (356)
T KOG1364|consen 279 SIQVRFPDG-RRKQRKFLKSEPVQLLWSFCYSHM----DGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSETL 350 (356)
T ss_pred EEEEecCCc-cHHHHhhccccHHHHHHHHHHHhh----cccccccceeeecccchhhhhccccchHHHhccCccccc
Confidence 388999998 666556677899998888766643 26777778899876 65644 569999999998863
No 327
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=23.29 E-value=62 Score=22.49 Aligned_cols=23 Identities=30% Similarity=0.344 Sum_probs=12.7
Q ss_pred ccccccCCCCCEEEEecCcccCC
Q 044874 246 SFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 246 tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
.|.+||+..||.|...+..++|-
T Consensus 22 ~l~~HGl~vGD~VnFsnsa~tGv 44 (83)
T PF12195_consen 22 TLTDHGLFVGDFVNFSNSAVTGV 44 (83)
T ss_dssp E-TT----TT-EEEEES-SSTT-
T ss_pred EEccCceeecceEEEeccccccc
Confidence 68899999999999998777663
No 328
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=23.03 E-value=2.9e+02 Score=19.72 Aligned_cols=61 Identities=7% Similarity=-0.002 Sum_probs=41.2
Q ss_pred EEEEecCCCcHHHHHHHHHHhhhccCCCCCC-C--ceEEEecC--eeecCCCccccccCCCCCEEEEe
Q 044874 199 IPVEVNASDNVSELRKELQKLHQRYHFHLPQ-D--GYFFIYKQ--NVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 199 ~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~-~--~q~l~~~g--~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.-+-|+..+|...+=+++....- +.-+++ . ..++-++| ..+..+.++.+.||.+-+.|.++
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsV--GrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~ 82 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSV--GRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVR 82 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTT--TTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhc--ceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEE
Confidence 34688999999999999887530 112333 2 35666888 99999999999999999999875
No 329
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=22.75 E-value=52 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.191 Sum_probs=31.1
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCC
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGD 256 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~ 256 (269)
..+++++|++|..... .|+++++. |..|.|..-+..+..-.|.
T Consensus 27 K~~~ddvkeqI~K~ak---KGltpsqI-----GviLRDshGi~q~r~v~G~ 69 (151)
T KOG0400|consen 27 KLTADDVKEQIYKLAK---KGLTPSQI-----GVILRDSHGIGQVRFVTGN 69 (151)
T ss_pred hcCHHHHHHHHHHHHH---cCCChhHc-----eeeeecccCcchhheechh
Confidence 3588999999998653 49999984 8888887655555544443
No 330
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=22.67 E-value=3.2e+02 Score=20.11 Aligned_cols=77 Identities=10% Similarity=0.061 Sum_probs=47.2
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccC--CCCCCC-ceEEEecCe--eecCCCcccccc-----CCC
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYH--FHLPQD-GYFFIYKQN--VMDDDRSFRWHH-----VGQ 254 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~--~~~p~~-~q~l~~~g~--~L~d~~tL~~~~-----i~~ 254 (269)
++.+.|...+....+++.+++++++.+|-+.+-.+. +.. -.-+++ .+.|-=.|+ -|..+..|.+|. ++.
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~ 95 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKN 95 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhc
Confidence 455666554445779999999999999999876652 111 122232 455544444 455666776664 556
Q ss_pred CCEEEEec
Q 044874 255 GDTIEIFN 262 (269)
Q Consensus 255 ~~~i~l~~ 262 (269)
|..++++.
T Consensus 96 ~~~~~L~L 103 (108)
T smart00144 96 GREPHLVL 103 (108)
T ss_pred CCCceEEE
Confidence 66666654
No 331
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=21.72 E-value=2.4e+02 Score=20.06 Aligned_cols=38 Identities=11% Similarity=0.065 Sum_probs=31.4
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCC-cEEEEE
Q 044874 8 QRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVP-KQTLVF 45 (269)
Q Consensus 8 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~ 45 (269)
.+|..+...+++..|-++|.+++.+....... ...+.|
T Consensus 7 y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw 45 (83)
T cd06404 7 YNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKW 45 (83)
T ss_pred ecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEE
Confidence 36888999999999999999999999988754 345555
No 332
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=20.77 E-value=3.2e+02 Score=19.47 Aligned_cols=46 Identities=4% Similarity=0.117 Sum_probs=32.7
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN 239 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~ 239 (269)
++|-|. ..| ....+.|+++-+..+|..+|.++- ++. ....+-|..-
T Consensus 3 ikVKv~-~~~-Dv~~i~v~~~i~f~dL~~kIrdkf-----~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVH-AQD-DTRYIMIGPDTGFADFEDKIRDKF-----GFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEE-ecC-cEEEEEcCCCCCHHHHHHHHHHHh-----CCC-CceEEEEEcC
Confidence 444454 245 789999999999999999999974 664 2344545433
No 333
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=20.47 E-value=3e+02 Score=18.99 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=18.1
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN 239 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~ 239 (269)
.-+|.+||++|.+++ .+|-..+-...+|+..
T Consensus 20 ~Isv~dLKr~I~~~~---~lg~~~dfdL~i~na~ 50 (74)
T PF08783_consen 20 SISVFDLKREIIEKK---KLGKGTDFDLVIYNAQ 50 (74)
T ss_dssp EEEHHHHHHHHHHHH---T---TTTEEEEEEESS
T ss_pred eeEHHHHHHHHHHHh---CCCcCCcCCEEEECCC
Confidence 348999999998876 2344444344445433
No 334
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=20.33 E-value=1.7e+02 Score=26.27 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHh--------------C-CCCCcEEEEEcCEEcCCCCccccCCC---CCCCEEEEEEe
Q 044874 14 TIEVGFFDTVLEIKEKIEKYQ--------------G-IPVPKQTLVFNGQVLQDDRDVEHCEI---LQNSRIQLLVA 72 (269)
Q Consensus 14 ~l~v~~~~tV~~lK~~I~~~~--------------g-i~~~~q~L~~~G~~L~d~~tL~~~~i---~~~~~i~l~~~ 72 (269)
.|.++.-..|..++..|+++. . -|.++.-|+|+|++|..+.||+...= +.+.-|.|..|
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR 327 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYR 327 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEE
Confidence 566677788999999999998 2 45566789999999999999876532 34555555544
No 335
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=20.22 E-value=2.3e+02 Score=22.72 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEE-EEcCE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTL-VFNGQ 48 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L-~~~G~ 48 (269)
...+++.|+++.|=.++|..|+..+++.+...+- ...|+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 4689999999999999999999999999877654 44554
Done!