Query 044874
Match_columns 269
No_of_seqs 310 out of 2203
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:09:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 9.1E-34 3.1E-38 228.1 19.2 150 1-170 3-155 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 1.3E-33 4.6E-38 230.0 17.1 150 1-170 21-170 (172)
3 3u30_A Ubiquitin, linear DI-ub 100.0 1.4E-32 4.9E-37 223.9 18.5 157 85-268 16-172 (172)
4 3rt3_B Ubiquitin-like protein 100.0 2.1E-32 7.2E-37 220.1 19.1 152 90-267 3-157 (159)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 9.5E-32 3.3E-36 214.3 19.6 150 1-170 1-150 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 1.9E-30 6.5E-35 206.7 19.7 152 90-268 1-152 (152)
7 3phx_B Ubiquitin-like protein 99.8 1.4E-19 4.7E-24 128.1 10.7 75 1-75 5-79 (79)
8 3plu_A Ubiquitin-like modifier 99.8 1.2E-19 4E-24 130.5 10.0 75 181-261 17-91 (93)
9 4fbj_B NEDD8; effector-HOST ta 99.8 1.2E-19 4E-24 131.2 9.9 78 1-78 1-78 (88)
10 3plu_A Ubiquitin-like modifier 99.8 1.5E-19 5E-24 129.9 10.0 70 1-70 22-91 (93)
11 1ndd_A NEDD8, protein (ubiquit 99.8 5.8E-19 2E-23 123.5 10.8 76 1-76 1-76 (76)
12 3a9j_A Ubiquitin; protein comp 99.8 1.3E-18 4.4E-23 121.8 11.1 76 1-76 1-76 (76)
13 2kk8_A Uncharacterized protein 99.8 5E-19 1.7E-23 126.7 8.9 73 1-73 11-84 (84)
14 2uyz_B Small ubiquitin-related 99.8 5.5E-19 1.9E-23 125.0 9.0 76 1-76 4-79 (79)
15 3dbh_I NEDD8; cell cycle, acti 99.8 6.1E-19 2.1E-23 127.2 8.9 76 1-76 13-88 (88)
16 4hcn_B Polyubiquitin, ubiquiti 99.8 9.5E-19 3.2E-23 129.0 10.0 76 1-76 23-98 (98)
17 3n3k_B Ubiquitin; hydrolase, p 99.8 1.1E-18 3.7E-23 125.0 9.6 77 1-77 4-80 (85)
18 1sif_A Ubiquitin; hydrophobic 99.8 1.1E-18 3.9E-23 126.0 9.6 77 1-77 10-86 (88)
19 1uh6_A Ubiquitin-like 5; beta- 99.8 8.8E-19 3E-23 128.3 9.0 74 182-261 25-98 (100)
20 4dwf_A HLA-B-associated transc 99.8 1.7E-18 5.8E-23 125.5 10.3 76 1-77 6-81 (90)
21 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2.2E-18 7.5E-23 126.4 10.9 78 1-78 2-79 (96)
22 1wy8_A NP95-like ring finger p 99.8 2.6E-18 8.9E-23 124.2 10.6 77 1-77 8-86 (89)
23 1wyw_B Ubiquitin-like protein 99.8 1.5E-18 5.3E-23 127.6 9.4 76 1-76 22-97 (97)
24 1uh6_A Ubiquitin-like 5; beta- 99.8 9E-19 3.1E-23 128.3 7.9 71 1-71 29-99 (100)
25 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.3E-18 8E-23 123.2 9.9 77 1-77 4-80 (85)
26 2lxa_A Ubiquitin-like protein 99.8 7E-19 2.4E-23 126.4 7.1 74 1-74 2-79 (87)
27 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.5E-18 8.4E-23 123.8 9.9 77 1-77 8-84 (87)
28 3v6c_B Ubiquitin; structural g 99.8 2.4E-18 8.2E-23 125.1 9.7 74 1-74 18-91 (91)
29 1yx5_B Ubiquitin; proteasome, 99.8 4E-18 1.4E-22 125.6 11.0 77 1-77 1-77 (98)
30 2hj8_A Interferon-induced 17 k 99.8 1E-18 3.4E-23 126.3 7.4 77 1-77 5-81 (88)
31 2faz_A Ubiquitin-like containi 99.8 3.6E-18 1.2E-22 120.4 10.0 73 1-73 3-77 (78)
32 4eew_A Large proline-rich prot 99.8 3.4E-18 1.2E-22 123.4 10.0 86 157-262 2-87 (88)
33 2kan_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 125.1 9.8 76 1-77 16-92 (94)
34 1uel_A HHR23B, UV excision rep 99.8 9.7E-18 3.3E-22 122.8 12.1 77 1-77 1-80 (95)
35 3phx_B Ubiquitin-like protein 99.8 5.8E-18 2E-22 119.6 10.3 72 185-262 4-75 (79)
36 3vdz_A Ubiquitin-40S ribosomal 99.8 5.8E-18 2E-22 127.6 10.6 76 1-76 36-111 (111)
37 4fbj_B NEDD8; effector-HOST ta 99.8 5.4E-18 1.8E-22 122.4 10.0 76 186-268 1-76 (88)
38 3v6c_B Ubiquitin; structural g 99.8 8E-18 2.7E-22 122.3 10.9 78 179-262 11-88 (91)
39 3dbh_I NEDD8; cell cycle, acti 99.7 9.5E-18 3.3E-22 120.9 11.1 78 184-268 11-88 (88)
40 4hcn_B Polyubiquitin, ubiquiti 99.7 6E-18 2.1E-22 124.6 9.9 81 181-268 18-98 (98)
41 4eew_A Large proline-rich prot 99.7 6.9E-18 2.4E-22 121.8 9.9 71 1-72 18-88 (88)
42 2l7r_A Ubiquitin-like protein 99.7 5.1E-18 1.8E-22 123.8 8.9 74 1-76 20-93 (93)
43 3m62_B UV excision repair prot 99.7 3.5E-18 1.2E-22 127.7 7.9 75 1-75 2-76 (106)
44 2wyq_A HHR23A, UV excision rep 99.7 1.4E-17 4.9E-22 119.2 10.4 74 1-74 6-82 (85)
45 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1.7E-17 5.7E-22 119.4 10.7 81 181-268 3-83 (87)
46 4a20_A Ubiquitin-like protein 99.7 7.7E-18 2.6E-22 123.6 9.0 74 1-74 20-97 (98)
47 1wgd_A Homocysteine-responsive 99.7 7.7E-18 2.6E-22 122.9 8.9 77 1-77 8-90 (93)
48 4dwf_A HLA-B-associated transc 99.7 1.6E-17 5.4E-22 120.4 10.4 75 183-264 3-77 (90)
49 2kk8_A Uncharacterized protein 99.7 1.1E-17 3.8E-22 119.6 9.0 73 184-262 9-82 (84)
50 3l0w_B Monoubiquitinated proli 99.7 2.2E-17 7.5E-22 133.4 11.4 78 1-78 1-78 (169)
51 2dzi_A Ubiquitin-like protein 99.7 1.4E-17 4.6E-22 118.1 8.9 73 1-73 8-80 (81)
52 2fnj_B Transcription elongatio 99.7 1.2E-17 4E-22 125.8 8.5 75 1-76 1-83 (118)
53 1uel_A HHR23B, UV excision rep 99.7 4.5E-17 1.6E-21 119.2 11.0 77 186-268 1-80 (95)
54 2ojr_A Ubiquitin; lanthide-bin 99.7 4.3E-17 1.5E-21 122.8 11.1 76 1-76 36-111 (111)
55 3q3f_A Ribonuclease/ubiquitin 99.7 8.2E-18 2.8E-22 137.5 7.6 77 1-77 106-182 (189)
56 2uyz_B Small ubiquitin-related 99.7 1.9E-17 6.5E-22 117.0 8.4 73 185-263 3-75 (79)
57 1yqb_A Ubiquilin 3; structural 99.7 2.5E-17 8.5E-22 121.7 9.4 76 1-77 23-98 (100)
58 2bwf_A Ubiquitin-like protein 99.7 4E-17 1.4E-21 114.5 10.0 72 1-73 5-76 (77)
59 3b1l_X E3 ubiquitin-protein li 99.6 4.7E-19 1.6E-23 124.3 0.0 75 1-75 1-75 (76)
60 3n3k_B Ubiquitin; hydrolase, p 99.7 2.9E-17 1E-21 117.5 9.4 76 185-266 3-78 (85)
61 3m63_B Ubiquitin domain-contai 99.7 7E-18 2.4E-22 124.9 6.3 93 149-263 7-99 (101)
62 2lxa_A Ubiquitin-like protein 99.7 1.1E-17 3.7E-22 120.2 6.6 71 186-262 2-76 (87)
63 1wx8_A Riken cDNA 4931431F19; 99.7 1.4E-17 4.7E-22 122.2 7.3 77 1-78 18-94 (96)
64 2hj8_A Interferon-induced 17 k 99.7 2.8E-17 9.6E-22 118.6 8.7 76 185-266 4-79 (88)
65 1wju_A NEDD8 ultimate buster-1 99.7 2.4E-17 8.2E-22 120.7 8.3 63 197-264 30-92 (100)
66 1wyw_B Ubiquitin-like protein 99.7 3.4E-17 1.2E-21 120.4 9.2 80 182-268 18-97 (97)
67 2l7r_A Ubiquitin-like protein 99.7 3E-17 1E-21 119.7 8.8 81 179-268 13-93 (93)
68 3mtn_B UBA80, ubcep1, ubiquiti 99.7 6.7E-17 2.3E-21 115.5 10.5 75 185-265 3-77 (85)
69 2kan_A Uncharacterized protein 99.7 7E-17 2.4E-21 117.9 10.5 79 183-268 13-92 (94)
70 4ajy_B Transcription elongatio 99.7 4.1E-17 1.4E-21 122.3 9.3 76 1-76 1-84 (118)
71 1ndd_A NEDD8, protein (ubiquit 99.7 7.3E-17 2.5E-21 112.7 10.1 76 186-268 1-76 (76)
72 1sif_A Ubiquitin; hydrophobic 99.7 5.9E-17 2E-21 116.9 9.9 77 185-268 9-85 (88)
73 1wy8_A NP95-like ring finger p 99.7 1.2E-16 4.1E-21 115.4 11.5 76 183-263 5-81 (89)
74 2wyq_A HHR23A, UV excision rep 99.7 9.1E-17 3.1E-21 115.0 10.5 74 185-264 5-81 (85)
75 4a20_A Ubiquitin-like protein 99.7 5.3E-17 1.8E-21 119.1 9.4 75 184-264 18-96 (98)
76 1ttn_A DC-UBP, dendritic cell- 99.7 3.7E-17 1.3E-21 122.1 8.7 76 1-76 24-99 (106)
77 1v2y_A 3300001G02RIK protein; 99.7 2.6E-17 8.8E-22 121.9 7.6 73 184-262 6-94 (105)
78 2faz_A Ubiquitin-like containi 99.7 8.6E-17 2.9E-21 113.3 9.9 73 185-263 2-76 (78)
79 2kdi_A Ubiquitin, vacuolar pro 99.7 1.1E-16 3.7E-21 121.1 11.0 77 1-77 10-86 (114)
80 1v5o_A 1700011N24RIK protein; 99.7 3.6E-17 1.2E-21 121.4 8.2 78 1-78 8-90 (102)
81 2klc_A Ubiquilin-1; ubiquitin- 99.7 1E-16 3.6E-21 118.6 10.7 74 1-75 26-99 (101)
82 2dzi_A Ubiquitin-like protein 99.7 9E-17 3.1E-21 113.9 9.9 75 183-263 5-79 (81)
83 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.4E-16 4.9E-21 118.9 11.1 77 1-78 18-94 (106)
84 1wju_A NEDD8 ultimate buster-1 99.7 7.3E-17 2.5E-21 118.1 9.0 73 3-76 18-94 (100)
85 3m62_B UV excision repair prot 99.7 6.3E-17 2.2E-21 120.8 8.8 72 186-263 2-73 (106)
86 1v2y_A 3300001G02RIK protein; 99.7 1.7E-17 6E-22 122.9 5.6 77 1-77 8-100 (105)
87 2fnj_B Transcription elongatio 99.7 6.1E-17 2.1E-21 121.9 8.6 73 186-263 1-80 (118)
88 1wgh_A Ubiquitin-like 3, HCG-1 99.7 1.3E-16 4.4E-21 120.3 10.3 77 1-77 17-103 (116)
89 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.5E-16 5.1E-21 116.6 10.3 73 186-264 2-74 (96)
90 3a9j_A Ubiquitin; protein comp 99.7 1.9E-16 6.6E-21 110.6 10.5 76 186-268 1-76 (76)
91 1j8c_A Ubiquitin-like protein 99.7 1.3E-16 4.4E-21 122.5 10.4 76 1-77 33-108 (125)
92 3vdz_A Ubiquitin-40S ribosomal 99.7 1.9E-16 6.5E-21 119.2 11.0 78 184-268 34-111 (111)
93 1we6_A Splicing factor, putati 99.7 5.1E-17 1.7E-21 122.4 7.5 77 1-77 28-108 (111)
94 2bwf_A Ubiquitin-like protein 99.7 2.7E-16 9.2E-21 110.3 10.7 71 186-263 5-75 (77)
95 1se9_A Ubiquitin family; ubiqu 99.7 1.2E-16 3.9E-21 121.7 9.3 77 1-77 17-107 (126)
96 4ajy_B Transcription elongatio 99.7 1.3E-16 4.3E-21 119.6 9.3 73 186-263 1-80 (118)
97 4dbg_A Ranbp-type and C3HC4-ty 99.7 2.4E-16 8.1E-21 116.3 10.0 73 1-73 25-100 (105)
98 2ojr_A Ubiquitin; lanthide-bin 99.7 1.8E-16 6.1E-21 119.4 9.5 79 183-268 33-111 (111)
99 1ttn_A DC-UBP, dendritic cell- 99.7 2.5E-16 8.5E-21 117.6 10.1 77 182-264 20-96 (106)
100 3u5e_m 60S ribosomal protein L 99.7 3.8E-18 1.3E-22 131.8 0.1 77 1-77 1-77 (128)
101 1wx8_A Riken cDNA 4931431F19; 99.7 2.3E-16 7.9E-21 115.6 9.5 78 182-266 14-91 (96)
102 1wgd_A Homocysteine-responsive 99.7 3.7E-16 1.3E-20 113.9 9.8 77 184-264 6-86 (93)
103 2gow_A HCG-1 protein, ubiquiti 99.7 1.6E-16 5.4E-21 121.5 7.8 77 1-77 18-104 (125)
104 1wgh_A Ubiquitin-like 3, HCG-1 99.7 8E-16 2.7E-20 116.0 11.5 79 183-262 14-97 (116)
105 1v5o_A 1700011N24RIK protein; 99.7 4.3E-16 1.5E-20 115.5 9.9 75 184-263 6-84 (102)
106 1yx5_B Ubiquitin; proteasome, 99.7 6.3E-16 2.2E-20 113.7 10.4 73 186-264 1-73 (98)
107 3u5c_f 40S ribosomal protein S 99.7 8.2E-18 2.8E-22 133.2 0.0 77 1-77 1-77 (152)
108 1yqb_A Ubiquilin 3; structural 99.7 8.4E-16 2.9E-20 113.5 10.6 75 182-263 19-93 (100)
109 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.1E-15 3.6E-20 113.2 10.9 74 184-264 24-97 (101)
110 3l0w_B Monoubiquitinated proli 99.6 7.5E-16 2.6E-20 124.3 10.8 76 186-268 1-76 (169)
111 2kdb_A Homocysteine-responsive 99.6 3.1E-16 1E-20 115.3 7.6 73 184-261 22-99 (99)
112 1j8c_A Ubiquitin-like protein 99.6 1.3E-15 4.5E-20 116.8 11.5 76 183-265 30-105 (125)
113 4dbg_A Ranbp-type and C3HC4-ty 99.6 1.5E-15 5.3E-20 112.0 10.8 75 183-262 22-98 (105)
114 1wx7_A Ubiquilin 3; ubiquitin- 99.6 1.6E-15 5.5E-20 113.2 11.1 73 183-262 15-87 (106)
115 2kdb_A Homocysteine-responsive 99.6 2.7E-16 9.2E-21 115.6 6.7 70 1-70 24-99 (99)
116 3m63_B Ubiquitin domain-contai 99.6 1.4E-16 4.7E-21 117.9 5.0 72 1-73 29-100 (101)
117 1we7_A SF3A1 protein; structur 99.6 7.7E-16 2.6E-20 116.6 9.2 77 1-77 26-112 (115)
118 1wia_A Hypothetical ubiquitin- 99.6 8.8E-16 3E-20 112.3 9.1 74 1-77 8-82 (95)
119 1v5t_A 8430435I17RIK protein; 99.6 5.4E-16 1.9E-20 112.3 7.7 74 1-75 8-85 (90)
120 1v5t_A 8430435I17RIK protein; 99.6 9.7E-16 3.3E-20 111.0 9.0 74 183-263 5-82 (90)
121 2gow_A HCG-1 protein, ubiquiti 99.6 1.2E-15 4.3E-20 116.5 10.0 73 184-262 16-98 (125)
122 1se9_A Ubiquitin family; ubiqu 99.6 1.2E-15 4.1E-20 116.1 9.7 78 185-263 16-102 (126)
123 1wgg_A Ubiquitin carboxyl-term 99.6 7.3E-16 2.5E-20 112.9 8.2 73 1-75 8-81 (96)
124 3q3f_A Ribonuclease/ubiquitin 99.6 1.2E-15 4.3E-20 124.6 10.3 78 184-268 104-181 (189)
125 1we6_A Splicing factor, putati 99.6 1.1E-15 3.9E-20 114.9 9.2 77 185-268 27-107 (111)
126 1wgg_A Ubiquitin carboxyl-term 99.6 1.2E-15 4E-20 111.8 9.0 71 184-262 6-77 (96)
127 2kdi_A Ubiquitin, vacuolar pro 99.6 1.9E-15 6.4E-20 114.2 10.3 73 185-263 9-81 (114)
128 2kd0_A LRR repeats and ubiquit 99.6 1.5E-15 5E-20 108.8 9.2 71 3-73 14-84 (85)
129 1x1m_A Ubiquitin-like protein 99.6 1.7E-15 5.8E-20 113.2 9.1 75 1-75 13-102 (107)
130 3b1l_X E3 ubiquitin-protein li 99.4 5.3E-17 1.8E-21 113.7 0.0 71 186-262 1-71 (76)
131 2daf_A FLJ35834 protein; hypot 99.6 4.7E-15 1.6E-19 110.5 10.1 75 2-76 17-92 (118)
132 2kd0_A LRR repeats and ubiquit 99.6 4.9E-15 1.7E-19 106.1 9.7 70 187-262 13-82 (85)
133 1wxv_A BAG-family molecular ch 99.6 3.6E-15 1.2E-19 108.4 8.8 74 1-75 8-87 (92)
134 1wia_A Hypothetical ubiquitin- 99.6 6.6E-15 2.3E-19 107.6 10.2 72 183-263 5-77 (95)
135 1v86_A DNA segment, CHR 7, way 99.6 3.5E-15 1.2E-19 109.1 8.2 76 181-264 13-88 (95)
136 2dzj_A Synaptic glycoprotein S 99.6 3.8E-15 1.3E-19 107.2 7.8 70 185-260 10-85 (88)
137 2dzm_A FAS-associated factor 1 99.6 2E-15 6.9E-20 110.9 6.3 75 1-76 9-85 (100)
138 1v86_A DNA segment, CHR 7, way 99.6 1E-15 3.6E-20 111.9 4.7 74 1-76 18-91 (95)
139 1wxv_A BAG-family molecular ch 99.6 1.5E-14 5.2E-19 105.0 10.6 74 184-264 6-85 (92)
140 2dzm_A FAS-associated factor 1 99.6 7.7E-15 2.6E-19 107.8 8.9 76 185-267 8-85 (100)
141 4b6w_A Tubulin-specific chaper 99.6 5.2E-15 1.8E-19 106.0 7.6 66 195-265 13-85 (86)
142 2dzj_A Synaptic glycoprotein S 99.6 2.5E-15 8.4E-20 108.2 5.2 69 1-69 11-85 (88)
143 1x1m_A Ubiquitin-like protein 99.6 2.2E-14 7.7E-19 107.1 10.7 84 179-265 6-101 (107)
144 3u5c_f 40S ribosomal protein S 99.6 2.6E-16 8.8E-21 124.5 0.0 75 186-266 1-75 (152)
145 1we7_A SF3A1 protein; structur 99.6 1.9E-14 6.6E-19 108.8 10.3 68 194-268 44-111 (115)
146 2daf_A FLJ35834 protein; hypot 99.6 2.9E-14 1E-18 106.2 11.0 73 186-263 16-88 (118)
147 2kjr_A CG11242; UBL, ubiquitin 99.6 2.1E-14 7.2E-19 104.7 9.9 75 183-262 13-94 (95)
148 3u5e_m 60S ribosomal protein L 99.6 3E-16 1E-20 121.1 0.0 72 186-263 1-72 (128)
149 2xzm_9 RPS31E; ribosome, trans 99.6 3.5E-16 1.2E-20 127.1 0.0 72 1-77 1-72 (189)
150 2kj6_A Tubulin folding cofacto 99.5 3.9E-14 1.3E-18 103.6 9.3 76 184-264 13-96 (97)
151 2kjr_A CG11242; UBL, ubiquitin 99.5 4.2E-14 1.4E-18 103.1 9.4 69 2-70 17-93 (95)
152 3ai5_A Yeast enhanced green fl 99.5 2.7E-14 9.2E-19 124.8 9.5 73 1-73 234-306 (307)
153 2io1_B Small ubiquitin-related 99.5 6.6E-14 2.3E-18 101.9 9.3 77 1-77 8-84 (94)
154 4b6w_A Tubulin-specific chaper 99.5 3.3E-14 1.1E-18 101.8 7.2 67 8-74 12-85 (86)
155 2io1_B Small ubiquitin-related 99.5 1.5E-13 5.2E-18 99.9 9.9 80 182-267 4-83 (94)
156 1oqy_A HHR23A, UV excision rep 99.5 5.3E-14 1.8E-18 126.2 8.7 79 184-265 6-84 (368)
157 1v6e_A Cytoskeleton-associated 99.5 2.5E-13 8.4E-18 99.2 10.2 75 185-264 7-88 (95)
158 1oqy_A HHR23A, UV excision rep 99.5 4.1E-14 1.4E-18 127.0 7.3 77 1-77 8-88 (368)
159 1wf9_A NPL4 family protein; be 99.5 9.6E-14 3.3E-18 103.6 7.8 72 184-262 6-93 (107)
160 2kj6_A Tubulin folding cofacto 99.5 1.1E-13 3.8E-18 101.2 7.6 70 2-71 16-94 (97)
161 2io0_B Small ubiquitin-related 99.5 5.2E-13 1.8E-17 96.4 10.4 77 1-77 6-82 (91)
162 3ai5_A Yeast enhanced green fl 99.5 2.9E-13 9.9E-18 118.3 10.5 73 184-262 232-304 (307)
163 1wf9_A NPL4 family protein; be 99.4 9E-14 3.1E-18 103.8 5.2 73 1-74 8-96 (107)
164 1v6e_A Cytoskeleton-associated 99.4 3.4E-13 1.2E-17 98.5 7.4 70 2-71 9-86 (95)
165 2d07_B Ubiquitin-like protein 99.4 1.4E-12 4.9E-17 94.6 10.0 76 1-76 18-93 (93)
166 2xzm_9 RPS31E; ribosome, trans 99.4 2.2E-14 7.4E-19 116.6 0.2 71 186-268 1-71 (189)
167 2io0_B Small ubiquitin-related 99.4 2.2E-12 7.7E-17 93.1 10.0 80 183-268 3-82 (91)
168 1wm3_A Ubiquitin-like protein 99.4 2.1E-12 7.2E-17 89.3 9.2 70 1-70 2-71 (72)
169 1t0y_A Tubulin folding cofacto 99.4 1.9E-12 6.6E-17 98.8 9.3 73 1-73 7-87 (122)
170 1t0y_A Tubulin folding cofacto 99.4 2.4E-12 8.1E-17 98.3 9.8 76 185-265 6-88 (122)
171 2kzr_A Ubiquitin thioesterase 99.4 6E-13 2E-17 95.3 5.6 72 1-73 1-78 (86)
172 3a4r_A Nfatc2-interacting prot 99.3 6.5E-12 2.2E-16 88.4 10.0 75 182-261 4-78 (79)
173 2eke_C Ubiquitin-like protein 99.3 4.4E-12 1.5E-16 93.9 9.4 75 1-76 32-106 (106)
174 1wz0_A Ubiquitin-like protein 99.3 1.9E-12 6.6E-17 95.7 7.4 77 1-77 25-101 (104)
175 1wm3_A Ubiquitin-like protein 99.3 9.8E-12 3.4E-16 85.9 9.2 70 186-261 2-71 (72)
176 3a4r_A Nfatc2-interacting prot 99.3 1.1E-11 3.9E-16 87.1 9.5 70 1-70 8-78 (79)
177 3shq_A UBLCP1; phosphatase, hy 99.3 1.8E-12 6.3E-17 114.5 5.9 74 1-75 6-82 (320)
178 1wz0_A Ubiquitin-like protein 99.3 1.3E-11 4.5E-16 91.2 9.5 79 183-267 22-100 (104)
179 2kzr_A Ubiquitin thioesterase 99.3 5.5E-12 1.9E-16 90.2 7.1 71 186-263 1-77 (86)
180 2k8h_A Small ubiquitin protein 99.3 3E-12 1E-16 95.4 5.7 77 1-77 27-103 (110)
181 2d07_B Ubiquitin-like protein 99.3 2.8E-11 9.5E-16 87.8 9.7 76 183-264 15-90 (93)
182 3shq_A UBLCP1; phosphatase, hy 99.3 7.8E-12 2.7E-16 110.5 8.2 73 184-263 4-79 (320)
183 2eke_C Ubiquitin-like protein 99.3 4.7E-11 1.6E-15 88.3 10.7 77 181-264 27-103 (106)
184 2k8h_A Small ubiquitin protein 99.2 2.6E-11 9E-16 90.3 8.8 78 182-265 23-100 (110)
185 1wjn_A Tubulin-folding protein 99.2 2.7E-10 9.2E-15 83.2 10.7 79 184-268 8-97 (97)
186 1wjn_A Tubulin-folding protein 99.1 4.6E-10 1.6E-14 82.0 7.9 72 2-73 11-93 (97)
187 3kyd_D Small ubiquitin-related 99.0 2E-09 7E-14 80.3 10.6 74 1-74 41-114 (115)
188 3kyd_D Small ubiquitin-related 98.9 1.3E-08 4.5E-13 75.9 10.1 75 183-263 38-112 (115)
189 3pge_A SUMO-modified prolifera 98.9 1E-08 3.6E-13 83.9 9.8 76 1-77 30-105 (200)
190 3tix_A Ubiquitin-like protein 98.8 9.8E-09 3.3E-13 82.5 7.5 76 1-77 58-133 (207)
191 3pge_A SUMO-modified prolifera 98.8 3E-08 1E-12 81.2 10.0 79 183-268 27-105 (200)
192 3tix_A Ubiquitin-like protein 98.7 3.8E-08 1.3E-12 79.1 8.4 78 183-267 55-132 (207)
193 3v7o_A Minor nucleoprotein VP3 98.6 4.9E-09 1.7E-13 85.4 0.2 76 1-77 22-97 (227)
194 3goe_A DNA repair protein RAD6 98.6 4.3E-07 1.5E-11 62.0 9.4 69 3-71 12-81 (82)
195 2pjh_A Protein NPL4, nuclear p 98.5 3.6E-08 1.2E-12 69.2 3.1 69 1-70 5-78 (80)
196 3v7o_A Minor nucleoprotein VP3 98.5 1.8E-08 6.2E-13 82.1 0.4 79 183-268 19-97 (227)
197 2jxx_A Nfatc2-interacting prot 98.4 2.5E-06 8.6E-11 61.7 9.8 75 182-261 22-96 (97)
198 2jxx_A Nfatc2-interacting prot 98.4 1.8E-06 6.3E-11 62.4 8.9 69 2-70 27-96 (97)
199 3goe_A DNA repair protein RAD6 98.3 7.1E-06 2.4E-10 56.0 10.1 71 185-261 9-80 (82)
200 2pjh_A Protein NPL4, nuclear p 98.3 4.1E-07 1.4E-11 63.7 4.1 71 185-262 4-79 (80)
201 4efo_A Serine/threonine-protei 98.2 5.5E-06 1.9E-10 59.3 8.0 56 7-62 20-77 (94)
202 3uf8_A Ubiquitin-like protein 98.2 5.4E-06 1.8E-10 68.7 8.7 75 2-77 23-97 (209)
203 2l76_A Nfatc2-interacting prot 98.1 2.2E-05 7.5E-10 56.0 8.9 72 1-73 22-93 (95)
204 3ix6_A TS, tsase, thymidylate 98.1 4.4E-07 1.5E-11 80.4 0.1 77 2-79 23-99 (360)
205 3uf8_A Ubiquitin-like protein 98.0 3.6E-05 1.2E-09 63.7 9.7 77 183-266 19-95 (209)
206 2al3_A TUG long isoform; TUG U 97.9 4.1E-05 1.4E-09 54.1 7.7 74 1-74 10-83 (90)
207 2l76_A Nfatc2-interacting prot 97.9 0.00011 3.9E-09 52.3 9.9 73 183-262 19-91 (95)
208 4efo_A Serine/threonine-protei 97.9 7.6E-05 2.6E-09 53.4 9.0 70 187-261 14-86 (94)
209 2al3_A TUG long isoform; TUG U 97.8 0.00012 4E-09 51.7 8.6 74 186-265 10-83 (90)
210 2kc2_A Talin-1, F1; FERM, adhe 97.8 3.5E-05 1.2E-09 58.3 5.9 70 3-72 14-122 (128)
211 3ix6_A TS, tsase, thymidylate 97.8 3.1E-06 1.1E-10 75.1 0.0 76 183-265 19-94 (360)
212 2kc2_A Talin-1, F1; FERM, adhe 97.7 0.00011 3.8E-09 55.6 7.6 71 187-263 13-122 (128)
213 4da1_A Protein phosphatase 1K, 97.7 5.6E-06 1.9E-10 75.0 0.0 76 2-78 32-107 (389)
214 2bps_A YUKD protein; ubiquitin 97.6 0.00021 7E-09 49.7 7.5 70 185-260 4-80 (81)
215 2bps_A YUKD protein; ubiquitin 97.5 0.00022 7.5E-09 49.6 6.4 68 2-69 6-80 (81)
216 4da1_A Protein phosphatase 1K, 97.5 1.5E-05 5.1E-10 72.2 0.0 77 183-266 28-104 (389)
217 3ivf_A Talin-1; FERM domain, c 97.4 0.0084 2.9E-07 53.5 16.8 144 3-170 6-169 (371)
218 3ivf_A Talin-1; FERM domain, c 97.3 0.012 4.1E-07 52.6 16.9 131 109-261 15-165 (371)
219 3qx1_A FAS-associated factor 1 97.3 0.0015 5E-08 45.7 8.4 71 184-261 6-81 (84)
220 3qx1_A FAS-associated factor 1 97.2 0.0024 8.3E-08 44.6 8.6 69 2-71 9-82 (84)
221 2ylm_A Ubiquitin carboxyl-term 97.0 0.0063 2.2E-07 57.1 12.2 216 13-235 38-286 (530)
222 2dzk_A UBX domain-containing p 97.0 0.0077 2.6E-07 44.2 9.9 74 183-262 11-89 (109)
223 1ryj_A Unknown; beta/alpha pro 96.7 0.02 6.7E-07 38.4 9.5 67 185-268 4-70 (70)
224 4e71_A Plexin-B2, MM1; transme 96.6 0.019 6.5E-07 42.0 9.3 63 197-262 24-109 (111)
225 2dzk_A UBX domain-containing p 96.5 0.015 5.1E-07 42.7 8.3 73 2-74 15-92 (109)
226 1wj4_A KIAA0794 protein; UBX d 96.4 0.034 1.1E-06 41.8 10.2 76 184-266 42-122 (124)
227 2r2o_A Plexin-B1; effector dom 96.4 0.024 8.2E-07 43.0 8.9 65 197-264 41-129 (138)
228 2l32_A Small archaeal modifier 96.3 0.013 4.6E-07 39.8 6.9 66 186-268 1-66 (74)
229 1wj4_A KIAA0794 protein; UBX d 96.3 0.015 5.1E-07 43.7 7.5 70 2-72 45-119 (124)
230 1tyg_B YJBS; alpha beta barrel 96.2 0.018 6.2E-07 40.4 7.3 73 179-268 14-87 (87)
231 2cr5_A Reproduction 8; UBX dom 96.2 0.028 9.7E-07 41.1 8.6 72 183-261 21-96 (109)
232 2daj_A KIAA0977 protein, COBL- 95.9 0.053 1.8E-06 37.4 7.9 70 184-262 9-81 (91)
233 4e74_A Plexin-A4; RBD, structu 95.6 0.071 2.4E-06 39.4 8.3 65 197-264 27-115 (117)
234 3h6n_A Plexin-D1; structural g 95.3 0.15 5.1E-06 38.1 9.3 64 197-263 17-104 (127)
235 2kl0_A Putative thiamin biosyn 95.3 0.046 1.6E-06 37.0 6.1 61 194-269 6-66 (73)
236 4e71_A Plexin-B2, MM1; transme 95.3 0.12 4.3E-06 37.7 8.7 62 10-71 23-109 (111)
237 2cr5_A Reproduction 8; UBX dom 95.3 0.069 2.4E-06 39.0 7.4 70 2-72 25-98 (109)
238 2l32_A Small archaeal modifier 95.2 0.046 1.6E-06 37.1 5.7 67 1-77 1-67 (74)
239 2ylm_A Ubiquitin carboxyl-term 95.0 0.076 2.6E-06 49.7 8.7 143 113-260 42-214 (530)
240 2daj_A KIAA0977 protein, COBL- 95.0 0.042 1.5E-06 37.9 5.0 62 2-63 12-76 (91)
241 3jyu_A Ubiquitin carboxyl-term 95.0 0.14 5E-06 42.5 9.4 65 13-77 154-225 (231)
242 1s3s_G P47 protein; AAA ATPase 95.0 0.11 3.6E-06 39.1 7.8 67 2-68 54-124 (127)
243 2k5p_A THis protein, thiamine- 94.9 0.063 2.2E-06 36.8 5.8 62 194-269 6-70 (78)
244 3rpf_C Molybdopterin convertin 94.8 0.17 6E-06 33.9 7.9 57 201-268 16-74 (74)
245 4a3p_A Ubiquitin carboxyl-term 94.7 0.11 3.7E-06 42.8 8.0 65 12-76 141-212 (217)
246 3kuz_A Plexin-C1; structural g 94.7 0.51 1.7E-05 35.1 10.7 65 197-262 39-125 (126)
247 1s3s_G P47 protein; AAA ATPase 94.5 0.11 3.7E-06 39.1 6.9 69 185-258 52-123 (127)
248 3h6n_A Plexin-D1; structural g 94.1 0.52 1.8E-05 35.1 9.6 66 9-74 15-106 (127)
249 1ryj_A Unknown; beta/alpha pro 94.1 0.48 1.7E-05 31.4 8.7 66 1-76 5-70 (70)
250 1vjk_A Molybdopterin convertin 94.0 0.45 1.5E-05 33.7 9.0 77 186-268 10-98 (98)
251 2juo_A GA-binding protein alph 93.8 0.21 7.3E-06 34.3 6.4 57 114-170 10-66 (89)
252 2cu3_A Unknown function protei 93.5 0.25 8.7E-06 32.1 6.4 60 194-268 5-64 (64)
253 1oey_A P67-PHOX, neutrophil cy 93.2 0.2 6.9E-06 34.6 5.6 44 1-46 6-49 (83)
254 3po0_A Small archaeal modifier 93.2 0.49 1.7E-05 32.7 7.9 66 197-268 18-89 (89)
255 4e74_A Plexin-A4; RBD, structu 93.1 0.52 1.8E-05 34.7 8.0 63 11-73 27-115 (117)
256 1f0z_A THis protein; ubiquitin 92.8 0.19 6.7E-06 32.9 5.0 56 202-268 11-66 (66)
257 1fm0_D Molybdopterin convertin 92.7 0.23 7.8E-06 33.8 5.4 65 197-268 17-81 (81)
258 2r2o_A Plexin-B1; effector dom 92.7 0.6 2.1E-05 35.3 8.0 64 11-74 41-130 (138)
259 2juo_A GA-binding protein alph 92.4 0.59 2E-05 32.1 6.9 62 13-74 5-66 (89)
260 2q5w_D Molybdopterin convertin 91.8 0.35 1.2E-05 32.4 5.5 60 197-268 16-77 (77)
261 3hm6_X Plexin-B1; structural g 91.3 1.1 3.6E-05 42.3 9.7 66 197-265 274-363 (644)
262 1rws_A Hypothetical protein PF 91.3 0.11 3.6E-06 35.4 2.3 53 201-268 25-77 (77)
263 3rpf_C Molybdopterin convertin 90.7 1 3.4E-05 30.0 6.8 71 1-76 1-74 (74)
264 3jyu_A Ubiquitin carboxyl-term 90.6 0.9 3.1E-05 37.6 7.9 58 198-260 153-217 (231)
265 4a3p_A Ubiquitin carboxyl-term 90.6 0.7 2.4E-05 37.9 7.1 59 198-261 141-206 (217)
266 1vjk_A Molybdopterin convertin 90.5 1.9 6.4E-05 30.4 8.5 67 1-72 10-94 (98)
267 3ig3_A Plxna3 protein; plexin 90.4 1.7 5.7E-05 40.9 10.1 66 197-265 247-336 (627)
268 3kuz_A Plexin-C1; structural g 89.5 2.6 9E-05 31.2 8.7 60 11-70 39-124 (126)
269 1tyg_B YJBS; alpha beta barrel 88.6 1.2 4.1E-05 31.0 6.0 61 9-76 26-87 (87)
270 1wgk_A Riken cDNA 2900073H19 p 88.4 1.5 5.3E-05 32.0 6.8 77 185-269 11-109 (114)
271 2kvr_A Ubiquitin carboxyl-term 88.1 0.52 1.8E-05 35.5 4.1 34 13-46 58-91 (130)
272 1oey_A P67-PHOX, neutrophil cy 87.7 1.6 5.5E-05 30.0 6.1 46 188-239 6-51 (83)
273 2kl0_A Putative thiamin biosyn 87.7 0.78 2.7E-05 30.7 4.4 66 1-77 1-66 (73)
274 2g1e_A Hypothetical protein TA 87.7 2.4 8.2E-05 29.0 7.2 64 202-268 20-90 (90)
275 3dwg_C 9.5 kDa culture filtrat 85.6 4.7 0.00016 27.9 7.9 65 201-268 21-93 (93)
276 3dwg_C 9.5 kDa culture filtrat 85.5 4.9 0.00017 27.7 7.9 74 1-76 1-93 (93)
277 2qjl_A URM1, ubiquitin-related 84.6 1.5 5.2E-05 31.0 4.9 67 196-268 19-99 (99)
278 1f0z_A THis protein; ubiquitin 84.3 1.7 5.7E-05 28.2 4.7 65 1-75 1-65 (66)
279 3po0_A Small archaeal modifier 84.1 7.9 0.00027 26.4 8.7 61 11-76 18-89 (89)
280 1ef1_A Moesin; membrane, FERM 81.2 8.5 0.00029 32.5 9.2 71 1-72 2-78 (294)
281 2k5p_A THis protein, thiamine- 80.9 1.7 5.7E-05 29.5 3.7 67 1-77 1-70 (78)
282 3ig3_A Plxna3 protein; plexin 80.4 11 0.00038 35.4 10.1 65 10-74 246-336 (627)
283 1h4r_A Merlin; FERM, neurofibr 80.2 10 0.00035 32.4 9.5 70 2-72 24-98 (314)
284 1y8x_B Ubiquitin-activating en 79.3 2.3 7.7E-05 30.3 4.1 69 197-266 5-87 (98)
285 2l52_A Methanosarcina acetivor 77.6 4.8 0.00016 28.3 5.5 61 206-268 27-99 (99)
286 3hm6_X Plexin-B1; structural g 76.9 12 0.00041 35.3 9.2 64 11-74 274-363 (644)
287 1vd2_A Protein kinase C, IOTA 76.7 11 0.00038 26.1 7.0 44 3-46 7-52 (89)
288 1ip9_A BEM1 protein; ubiquitin 76.6 7.5 0.00026 26.7 5.8 35 9-45 20-54 (85)
289 1wgk_A Riken cDNA 2900073H19 p 76.4 11 0.00036 27.4 7.2 75 1-77 12-109 (114)
290 1wgr_A Growth factor receptor- 76.2 11 0.00038 26.7 6.9 75 182-262 6-91 (100)
291 4eut_A Serine/threonine-protei 75.8 10 0.00035 33.2 8.4 54 9-62 320-375 (396)
292 3qij_A Protein 4.1; cytoskelet 74.8 14 0.00048 31.3 8.7 73 1-73 18-96 (296)
293 2kmc_A Fermitin family homolog 73.1 22 0.00074 25.1 8.6 70 2-71 21-98 (102)
294 2i1j_A Moesin; FERM, coiled-co 72.9 18 0.00061 33.9 9.6 70 2-72 6-81 (575)
295 2kmm_A Guanosine-3',5'-BIS(dip 72.8 5.6 0.00019 25.9 4.5 62 186-262 1-62 (73)
296 1vd2_A Protein kinase C, IOTA 71.8 22 0.00075 24.6 8.2 49 184-239 5-54 (89)
297 1v8c_A MOAD related protein; r 71.8 8.9 0.0003 29.9 6.1 65 201-269 18-88 (168)
298 2cu3_A Unknown function protei 71.6 10 0.00035 24.1 5.5 59 9-75 5-63 (64)
299 2kmm_A Guanosine-3',5'-BIS(dip 70.8 13 0.00044 24.0 6.0 63 1-72 1-63 (73)
300 2qjl_A URM1, ubiquitin-related 70.6 24 0.00082 24.5 9.1 75 1-76 2-99 (99)
301 1fm0_D Molybdopterin convertin 69.9 12 0.00041 24.8 5.8 59 11-75 17-80 (81)
302 2l52_A Methanosarcina acetivor 69.4 23 0.00079 24.7 7.4 71 1-75 4-98 (99)
303 2k9x_A Tburm1, uncharacterized 69.2 3.3 0.00011 30.0 2.9 64 197-268 21-102 (110)
304 2k9x_A Tburm1, uncharacterized 69.1 1.1 3.9E-05 32.5 0.4 75 1-77 5-103 (110)
305 2kvr_A Ubiquitin carboxyl-term 66.2 3.1 0.00011 31.1 2.2 28 114-141 63-90 (130)
306 1wgy_A RAP guanine nucleotide 65.8 34 0.0011 24.4 8.9 77 180-262 4-85 (104)
307 2q5w_D Molybdopterin convertin 65.4 9.2 0.00031 25.1 4.4 57 11-73 16-74 (77)
308 3ge3_C Toluene-4-monooxygenase 64.9 30 0.001 23.5 6.8 62 199-262 17-82 (84)
309 2hj1_A Hypothetical protein; s 62.9 15 0.00053 25.8 5.3 71 185-262 12-84 (97)
310 2i1j_A Moesin; FERM, coiled-co 59.3 39 0.0013 31.6 8.9 70 184-260 3-78 (575)
311 1ef1_A Moesin; membrane, FERM 59.3 52 0.0018 27.4 9.1 68 186-260 2-75 (294)
312 1q1o_A Cell division control p 59.2 11 0.00037 26.7 3.9 37 10-46 22-63 (98)
313 3u52_E Phenol hydroxylase comp 58.8 48 0.0017 24.1 7.3 59 12-70 39-107 (119)
314 1h4r_A Merlin; FERM, neurofibr 58.7 45 0.0015 28.2 8.7 69 183-258 20-93 (314)
315 1wgy_A RAP guanine nucleotide 58.4 47 0.0016 23.6 7.5 75 87-168 7-86 (104)
316 3qa8_A MGC80376 protein; kinas 58.4 8.2 0.00028 37.0 4.2 51 9-59 320-371 (676)
317 2g1e_A Hypothetical protein TA 55.9 41 0.0014 22.5 6.5 60 15-75 19-89 (90)
318 1wgr_A Growth factor receptor- 54.8 22 0.00076 25.1 4.9 67 3-69 12-89 (100)
319 1y8x_B Ubiquitin-activating en 51.9 29 0.00097 24.4 5.1 59 12-70 6-82 (98)
320 3onh_A Ubiquitin-activating en 50.3 47 0.0016 24.5 6.2 52 20-72 19-79 (127)
321 4eut_A Serine/threonine-protei 49.2 1E+02 0.0035 26.6 9.6 45 190-239 315-359 (396)
322 1eik_A RNA polymerase subunit 49.1 23 0.00077 23.8 4.0 50 208-268 18-67 (77)
323 1rws_A Hypothetical protein PF 48.9 6.5 0.00022 26.2 1.3 49 14-71 24-72 (77)
324 3r8s_T 50S ribosomal protein L 48.3 53 0.0018 22.8 6.0 39 10-48 27-66 (93)
325 3qij_A Protein 4.1; cytoskelet 45.8 75 0.0026 26.7 7.9 72 183-260 15-92 (296)
326 1hmj_A RPB5, protein (subunit 45.5 22 0.00076 23.9 3.5 50 208-268 16-65 (78)
327 2inc_C TOUB protein; DIIRON, 4 45.3 69 0.0024 21.7 8.9 61 12-72 14-82 (83)
328 3onh_A Ubiquitin-activating en 44.6 74 0.0025 23.4 6.5 51 206-262 19-78 (127)
329 2inc_C TOUB protein; DIIRON, 4 43.8 73 0.0025 21.6 7.9 60 200-261 16-80 (83)
330 3ge3_C Toluene-4-monooxygenase 43.0 76 0.0026 21.5 7.5 60 12-71 16-82 (84)
331 1ip9_A BEM1 protein; ubiquitin 42.4 79 0.0027 21.5 7.0 33 186-220 13-45 (85)
332 3au4_A Myosin-X; protein-prote 41.9 56 0.0019 30.2 7.0 56 1-56 217-278 (555)
333 2c7h_A RBBP6, retinoblastoma-b 41.2 73 0.0025 21.8 5.7 41 3-43 9-51 (86)
334 3qa8_A MGC80376 protein; kinas 40.0 41 0.0014 32.2 5.8 62 197-263 322-393 (676)
335 3tve_T 50S ribosomal protein L 39.5 65 0.0022 22.3 5.3 39 10-48 21-60 (92)
336 1c1y_B Proto-onkogene serine/t 39.0 85 0.0029 21.0 5.6 42 3-44 4-45 (77)
337 1wxm_A A-RAF proto-oncogene se 37.8 86 0.0029 21.4 5.5 43 3-45 10-52 (86)
338 2k0q_A Putative uncharacterize 37.6 15 0.00051 24.2 1.6 16 247-262 7-22 (74)
339 3h9d_A ATG8, microtubule-assoc 37.2 78 0.0027 23.0 5.7 58 15-72 52-113 (119)
340 2eel_A Cell death activator CI 36.4 80 0.0027 21.8 5.3 51 21-74 28-80 (91)
341 3hvz_A Uncharacterized protein 36.3 80 0.0028 20.9 5.3 61 187-262 7-67 (78)
342 2c7h_A RBBP6, retinoblastoma-b 35.3 1.1E+02 0.0036 21.0 6.4 15 206-220 28-42 (86)
343 1pqs_A Cell division control p 34.9 32 0.0011 23.0 3.0 35 12-46 3-42 (77)
344 1vq8_S 50S ribosomal protein L 33.9 61 0.0021 22.1 4.4 33 10-42 22-54 (85)
345 2zjd_A Microtubule-associated 33.2 68 0.0023 23.7 4.9 57 15-72 57-119 (130)
346 2l05_A Serine/threonine-protei 32.6 1.3E+02 0.0043 21.0 6.3 43 2-44 19-61 (95)
347 2dhz_A RAP guanine nucleotide 32.5 1.4E+02 0.0049 21.7 7.2 76 181-262 5-91 (120)
348 4gmv_A RAS-associated and plec 32.4 1.3E+02 0.0046 25.2 7.2 72 184-261 30-112 (281)
349 3pvl_A Myosin VIIA isoform 1; 32.4 97 0.0033 29.4 7.0 45 1-45 264-309 (655)
350 1h1j_S THO1 protein; SAP domai 32.0 36 0.0012 20.8 2.6 20 206-231 7-26 (51)
351 2v1y_A Phosphatidylinositol-4, 31.8 91 0.0031 22.3 5.1 63 7-70 26-102 (108)
352 1zrj_A E1B-55KDA-associated pr 30.5 39 0.0013 20.6 2.6 20 206-231 12-31 (50)
353 2kmc_A Fermitin family homolog 30.2 1.4E+02 0.0049 20.9 8.6 74 184-262 18-98 (102)
354 3j21_T 50S ribosomal protein L 29.8 83 0.0028 21.5 4.5 34 10-43 23-56 (86)
355 1j0g_A Hypothetical protein 18 29.8 1.3E+02 0.0044 20.3 5.2 65 12-76 25-90 (92)
356 2lgx_A Fermitin family homolog 29.4 22 0.00075 25.5 1.5 67 3-70 29-100 (112)
357 1f2r_I Inhibitor of caspase-ac 29.3 1E+02 0.0034 21.7 4.9 50 21-73 37-90 (100)
358 2zjr_Q 50S ribosomal protein L 29.0 86 0.003 21.8 4.6 37 12-48 24-61 (95)
359 2dhz_A RAP guanine nucleotide 28.1 1.7E+02 0.0059 21.2 6.6 74 88-168 8-92 (120)
360 3m95_A Autophagy related prote 27.4 88 0.003 23.0 4.6 58 15-73 57-119 (125)
361 2v1y_A Phosphatidylinositol-4, 27.2 1.2E+02 0.0041 21.6 5.1 77 184-262 18-103 (108)
362 3tca_A Amyloid beta A4 precurs 27.1 1.1E+02 0.0036 25.1 5.8 38 3-40 37-74 (291)
363 2do1_A Nuclear protein HCC-1; 26.9 58 0.002 20.2 3.0 20 206-231 12-31 (55)
364 2kvu_A MKL/myocardin-like prot 25.5 55 0.0019 21.8 2.8 20 206-231 28-47 (75)
365 2r2q_A Gamma-aminobutyric acid 24.1 97 0.0033 22.0 4.2 45 15-59 48-93 (110)
366 3lxf_A Ferredoxin; iron, iron- 23.9 88 0.003 21.7 3.9 32 2-37 2-33 (104)
367 4gmv_A RAS-associated and plec 23.8 1.4E+02 0.0049 25.0 5.9 67 3-69 34-111 (281)
368 1rrb_A RAF-1 RBD, RAF proto-on 22.9 2.1E+02 0.0071 20.3 6.1 42 3-44 21-62 (107)
369 3ny5_A Serine/threonine-protei 22.3 2E+02 0.0069 20.0 5.8 44 3-46 16-59 (96)
370 3chb_D Cholera toxin; toxin/re 22.2 98 0.0033 20.9 3.5 31 3-33 39-69 (104)
371 3hk0_A Growth factor receptor- 21.7 1.5E+02 0.005 24.5 5.5 56 3-58 11-73 (256)
372 3hk0_A Growth factor receptor- 21.4 1.8E+02 0.0061 24.0 5.9 56 186-247 9-71 (256)
373 1eo6_A GATE-16, golgi-associat 21.1 1.2E+02 0.004 21.9 4.2 59 15-73 49-111 (117)
374 4ayb_H DNA-directed RNA polyme 20.7 1E+02 0.0034 20.9 3.5 50 208-268 24-73 (84)
375 4gdk_A Ubiquitin-like protein 20.6 2.1E+02 0.0072 19.5 5.9 55 200-261 23-83 (91)
376 2eel_A Cell death activator CI 20.6 2.1E+02 0.0073 19.6 6.3 57 111-170 22-80 (91)
377 3rui_B Autophagy-related prote 20.4 1.6E+02 0.0054 21.2 4.8 58 15-72 51-112 (118)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=9.1e-34 Score=228.11 Aligned_cols=150 Identities=19% Similarity=0.288 Sum_probs=139.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE-E-cCEEcCCCCccccCCCCCCCEEEEEEec-CCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV-F-NGQVLQDDRDVEHCEILQNSRIQLLVAS-DNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~-~G~~L~d~~tL~~~~i~~~~~i~l~~~~-~~g~ 77 (269)
|+|+||+++|++++++|++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|.++++|+++++. ++
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~-- 80 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDE-- 80 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCC--
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCC--
Confidence 89999999999999999999999999999999999999999999 9 7999999999999999999999999984 43
Q ss_pred CCcccCCCCCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCC
Q 044874 78 QVKTEQSSPSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCEL 157 (269)
Q Consensus 78 ~~~~~~~~~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i 157 (269)
.|+|+|+...... .........||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 81 -----------~m~i~vk~~~g~~-------~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i 142 (159)
T 3rt3_B 81 -----------PLSILVRNNKGRS-------STYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGL 142 (159)
T ss_dssp -----------CEEEEEECTTSCE-------EEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC
T ss_pred -----------cEEEEEECCCCCE-------EEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCC
Confidence 4689999875544 4556677899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEccC
Q 044874 158 MDNAEIDVHVRPS 170 (269)
Q Consensus 158 ~~~~~i~l~~~~~ 170 (269)
++|++|||+++++
T Consensus 143 ~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 143 KPLSTVFMNLRLR 155 (159)
T ss_dssp CTTCEEEEEECCC
T ss_pred CCCCEEEEEEecC
Confidence 9999999999998
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=230.03 Aligned_cols=150 Identities=27% Similarity=0.476 Sum_probs=137.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCc
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQVK 80 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~~~ 80 (269)
|+|+|++++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~--- 97 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM--- 97 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc---
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccCCCCCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCC
Q 044874 81 TEQSSPSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDN 160 (269)
Q Consensus 81 ~~~~~~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~ 160 (269)
+|+|+...... .........||.+||++|++++|+|+++|+|+|+|+.|+|+++|++|+|++|
T Consensus 98 ----------~i~Vk~~~g~~-------~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g 160 (172)
T 3u30_A 98 ----------QIFVKTLTGKT-------ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 160 (172)
T ss_dssp ----------EEEEEESSCCE-------EEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTT
T ss_pred ----------cceeecccCcc-------eeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCC
Confidence 78888765543 4455567889999999999999999999999999999999999999999999
Q ss_pred CEEEEEEccC
Q 044874 161 AEIDVHVRPS 170 (269)
Q Consensus 161 ~~i~l~~~~~ 170 (269)
++|||+++++
T Consensus 161 ~tl~l~~rlr 170 (172)
T 3u30_A 161 STLHLVLRLR 170 (172)
T ss_dssp CEEEECC---
T ss_pred CEEEEEEecC
Confidence 9999999987
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=223.93 Aligned_cols=157 Identities=22% Similarity=0.452 Sum_probs=138.4
Q ss_pred CCCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCCCEEE
Q 044874 85 SPSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDNAEID 164 (269)
Q Consensus 85 ~~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~~~i~ 164 (269)
++...|+|+|+...... .........||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+
T Consensus 16 ~~~~~m~i~Vk~~~g~~-------~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~ 88 (172)
T 3u30_A 16 PRGSHMQIFVKTLTGKT-------ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 88 (172)
T ss_dssp ---CCEEEEEEETTTEE-------EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEE
T ss_pred CCCCcEEEEEEeCCCCE-------EEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceee
Confidence 45678999999765543 44566778999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCCCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC
Q 044874 165 VHVRPSPTATSTTSSGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD 244 (269)
Q Consensus 165 l~~~~~~~~~~~~~~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~ 244 (269)
|+++++ ++ +.++|+..+| +++.++|++++||.+||++|++++ |+|+++|+|+|+|+.|+|+
T Consensus 89 l~~~~~--------gg-----~~i~Vk~~~g-~~~~l~v~~~~tV~~lK~~I~~~~-----gip~~~q~L~~~g~~L~D~ 149 (172)
T 3u30_A 89 LVLRLR--------GG-----MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDG 149 (172)
T ss_dssp EEECCC--------CC-----EEEEEEESSC-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGCCEEETTEECCTT
T ss_pred eeeccc--------cc-----ccceeecccC-cceeEEecCCCCHHHHHHHHHHHh-----CCCceeEEEEECCccCCCC
Confidence 999987 33 8999999998 999999999999999999999997 9999999999999999999
Q ss_pred CccccccCCCCCEEEEecCcccCC
Q 044874 245 RSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 245 ~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
++|.+|+|++|++|+|+. |+.||
T Consensus 150 ~tL~~y~i~~g~tl~l~~-rlrgG 172 (172)
T 3u30_A 150 RTLSDYNIQKESTLHLVL-RLRGG 172 (172)
T ss_dssp SBSGGGTCCTTCEEEECC------
T ss_pred CcHHHhCCCCCCEEEEEE-ecCCC
Confidence 999999999999999986 45444
No 4
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.1e-32 Score=220.12 Aligned_cols=152 Identities=17% Similarity=0.240 Sum_probs=135.7
Q ss_pred EEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEE-e-CCeeeccCCcccccCCCCCCEEEEEE
Q 044874 90 IHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQ-S-SGAELQDHRSLRDCELMDNAEIDVHV 167 (269)
Q Consensus 90 i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~-~-~g~~L~d~~~L~~y~i~~~~~i~l~~ 167 (269)
|+|+|+...... .........||++||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|++|++|+|++
T Consensus 3 m~i~vk~~~g~~-------~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~ 75 (159)
T 3rt3_B 3 WDLTVKMLAGNE-------FQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVV 75 (159)
T ss_dssp CEEEEEETTSCE-------EEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred eEEEEEECCCCE-------EEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence 578888655443 44566678999999999999999999999999 9 89999999999999999999999999
Q ss_pred cc-CCCCCCCCCCCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCc
Q 044874 168 RP-SPTATSTTSSGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRS 246 (269)
Q Consensus 168 ~~-~~~~~~~~~~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~t 246 (269)
+. + ..|+|+|+...| +++.++|++++||++||++|++++ |+|+++|+|+|+|+.|+|+++
T Consensus 76 ~~~~-------------~~m~i~vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gip~~~q~L~~~G~~L~d~~t 136 (159)
T 3rt3_B 76 DKSD-------------EPLSILVRNNKG-RSSTYEVRLTQTVAHLKQQVSGLE-----GVQDDLFWLTFEGKPLEDQLP 136 (159)
T ss_dssp CCCC-------------CCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTSB
T ss_pred cCCC-------------CcEEEEEECCCC-CEEEEEeCCCCCHHHHHHHHHHHH-----CCCHHHEEEEECCeecCCCCC
Confidence 84 4 139999999988 999999999999999999999987 999999999999999999999
Q ss_pred cccccCCCCCEEEEecCcccC
Q 044874 247 FRWHHVGQGDTIEIFNGSVTG 267 (269)
Q Consensus 247 L~~~~i~~~~~i~l~~~~~~~ 267 (269)
|++|||++|++|+++.+...|
T Consensus 137 L~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 137 LGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp GGGGTCCTTCEEEEEECCC--
T ss_pred HHHcCCCCCCEEEEEEecCCC
Confidence 999999999999998744333
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=9.5e-32 Score=214.28 Aligned_cols=150 Identities=27% Similarity=0.487 Sum_probs=139.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCCCc
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQVK 80 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~~~ 80 (269)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+..++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~---- 76 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG---- 76 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTC----
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ccCCCCCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCC
Q 044874 81 TEQSSPSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDN 160 (269)
Q Consensus 81 ~~~~~~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~ 160 (269)
|+|+|+...... .........||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|
T Consensus 77 ---------~~i~Vk~~~g~~-------~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~ 140 (152)
T 3b08_A 77 ---------MQIFVKTLTGKT-------ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 140 (152)
T ss_dssp ---------EEEEEEESSSCE-------EEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTT
T ss_pred ---------cceeeeecCCCE-------EEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCC
Confidence 478888765443 4445567899999999999999999999999999999999999999999999
Q ss_pred CEEEEEEccC
Q 044874 161 AEIDVHVRPS 170 (269)
Q Consensus 161 ~~i~l~~~~~ 170 (269)
++|+|+++++
T Consensus 141 ~~i~l~~r~~ 150 (152)
T 3b08_A 141 STLHLVLRLR 150 (152)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEecC
Confidence 9999999987
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.97 E-value=1.9e-30 Score=206.72 Aligned_cols=152 Identities=22% Similarity=0.444 Sum_probs=134.3
Q ss_pred EEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCCCEEEEEEcc
Q 044874 90 IHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDNAEIDVHVRP 169 (269)
Q Consensus 90 i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~~~i~l~~~~ 169 (269)
|+|+|+...... .........||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+.+.
T Consensus 1 M~i~vk~~~g~~-------~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKT-------ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCE-------EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCE-------EEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 467777644332 3344556889999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCcccc
Q 044874 170 SPTATSTTSSGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRW 249 (269)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~ 249 (269)
++ .|+|+|+...| +++.+++++++||.+||++|+++. |+|+++|+|+|+|+.|+|+.+|++
T Consensus 74 ~~-------------~~~i~Vk~~~g-~~~~~~v~~~~tv~~lK~~i~~~~-----gi~~~~qrL~~~g~~L~d~~tL~~ 134 (152)
T 3b08_A 74 RG-------------GMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSD 134 (152)
T ss_dssp TT-------------CEEEEEEESSS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTSBTGG
T ss_pred cc-------------ccceeeeecCC-CEEEEEeCCCCcHHHHHHHHHHHh-----CcChhhEEEEECCEECCCCCCHHH
Confidence 62 38999999998 999999999999999999999987 999999999999999999999999
Q ss_pred ccCCCCCEEEEecCcccCC
Q 044874 250 HHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 250 ~~i~~~~~i~l~~~~~~~~ 268 (269)
|||++|++|+++. |..||
T Consensus 135 ~~i~~~~~i~l~~-r~~GG 152 (152)
T 3b08_A 135 YNIQKESTLHLVL-RLRGG 152 (152)
T ss_dssp GTCCTTCEEEEEE-CCCC-
T ss_pred cCCCCCCEEEEEE-ecCCC
Confidence 9999999999986 44444
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=128.09 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=72.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++.+|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998764
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=1.2e-19 Score=130.46 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=69.9
Q ss_pred CCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 181 MGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 181 ~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
+.++.|+|+|++..| +++.+++++++||.+||++|++++ |+|+++|+|+|+|++|+|+.||++|+|++|++|+|
T Consensus 17 ~~~~mIqI~Vk~~~G-kk~~v~v~p~DTI~~LK~~I~~k~-----Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL 90 (93)
T 3plu_A 17 RGSHMIEVVVNDRLG-KKVRVKCLGEDSVGDFKKVLSLQI-----GTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLEL 90 (93)
T ss_dssp ---CEEEEEEECTTS-CEEEEEEETTSBHHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred CCCceEEEEEECCCC-CEEEEEECCcCHHHHHHHHHHHHh-----CCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEE
Confidence 345689999999998 999999999999999999999998 99999999999999999999999999999999998
Q ss_pred e
Q 044874 261 F 261 (269)
Q Consensus 261 ~ 261 (269)
.
T Consensus 91 ~ 91 (93)
T 3plu_A 91 Y 91 (93)
T ss_dssp E
T ss_pred E
Confidence 5
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.81 E-value=1.2e-19 Score=131.24 Aligned_cols=78 Identities=28% Similarity=0.480 Sum_probs=73.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQ 78 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~ 78 (269)
|+|+|++.+|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++.+||..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999874
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=1.5e-19 Score=129.94 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=68.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|+|+||+++|+++.++++|++||.+||++|+++.|+|+++|||+|+|+.|+|+.+|++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.79 E-value=5.8e-19 Score=123.55 Aligned_cols=76 Identities=29% Similarity=0.503 Sum_probs=72.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++.+||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999876
No 12
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.78 E-value=1.3e-18 Score=121.76 Aligned_cols=76 Identities=32% Similarity=0.535 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|++.++..||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999876
No 13
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=5e-19 Score=126.68 Aligned_cols=73 Identities=48% Similarity=0.747 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEE-cCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQV-LQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~-L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+|++++|+++.++|++++||++||++|++++|+|+++|||+|+|+. |+|+.+|++|+|.++++|+|++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998864
No 14
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=5.5e-19 Score=124.95 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=73.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++.+|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++..||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999876
No 15
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=6.1e-19 Score=127.22 Aligned_cols=76 Identities=28% Similarity=0.490 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..||
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999876
No 16
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=9.5e-19 Score=128.98 Aligned_cols=76 Identities=32% Similarity=0.535 Sum_probs=74.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+||..+|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+||
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999876
No 17
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=124.99 Aligned_cols=77 Identities=30% Similarity=0.495 Sum_probs=73.0
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++.+||.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999875
No 18
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=126.01 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++.+||.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999874
No 19
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=8.8e-19 Score=128.32 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=70.0
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
+...|+|+|++..| +++.++|++++||.+||++|++++ |+|+++|+|+|.|++|+|+.||++|||++|++|+|+
T Consensus 25 ~~~mm~I~VKtl~G-k~i~lev~p~dTV~~lK~~Ia~k~-----Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 25 AATMIEVVCNDRLG-KKVRVKCNTDDTIGDLKKLIAAQT-----GTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp CCCEEEEEEECSSS-SCEEEEEETTSBHHHHHHHHHHHH-----CCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEECCCC-CEEEEEeCCCCcHHHHHHHHHHHh-----CCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 34559999999988 999999999999999999999998 999999999999999999999999999999999986
No 20
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.77 E-value=1.7e-18 Score=125.54 Aligned_cols=76 Identities=29% Similarity=0.448 Sum_probs=72.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+||.++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+| ++++|+|+++.+++.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999 899999999988655
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.77 E-value=2.2e-18 Score=126.43 Aligned_cols=78 Identities=31% Similarity=0.522 Sum_probs=74.1
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQ 78 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~ 78 (269)
|+|+|+..+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..||..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~ 79 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD 79 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998863
No 22
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=2.6e-18 Score=124.25 Aligned_cols=77 Identities=27% Similarity=0.348 Sum_probs=74.4
Q ss_pred CEEEEEcCCC-CEEEE-EEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRG-KAFTI-EVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g-~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+| +++.+ +|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++..||+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 7999999999 79999 59999999999999999999999999999999999999999999999999999999999886
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=1.5e-18 Score=127.59 Aligned_cols=76 Identities=16% Similarity=0.283 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++.+|+++.++|++++||.+||++|+++.|+|+++|||+|+|+.|+|+.+|++|+|+++++|+++++..||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999876
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=9e-19 Score=128.26 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=68.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
|+|+||+++|+++.++|++++||.+||++|++++|+|+++|||+|+|++|+|+.+|++|+|+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.3e-18 Score=123.19 Aligned_cols=77 Identities=32% Similarity=0.494 Sum_probs=74.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+|+++.+++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..||.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999864
No 26
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=7e-19 Score=126.42 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCEEEEEEc--CCCCHHHHHHHH-HHHhCCCCCcEEEEEcCEEcCCCCccccCCC-CCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVG--FFDTVLEIKEKI-EKYQGIPVPKQTLVFNGQVLQDDRDVEHCEI-LQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~--~~~tV~~lK~~I-~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i-~~~~~i~l~~~~~ 74 (269)
|+|+||+++|++++++|+ +++||.+||++| +++.|+|+++|||+|+|+.|+|+.+|++|+| .++++|+|.+++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999998866 999999999999 9999999999999999999999999999999 6999999998864
No 27
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.5e-18 Score=123.82 Aligned_cols=77 Identities=27% Similarity=0.411 Sum_probs=75.0
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..||.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999875
No 28
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=2.4e-18 Score=125.06 Aligned_cols=74 Identities=31% Similarity=0.530 Sum_probs=71.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
|+|+||+.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998753
No 29
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.76 E-value=4e-18 Score=125.58 Aligned_cols=77 Identities=31% Similarity=0.524 Sum_probs=74.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.+..||+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887
No 30
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=126.29 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=70.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..+|.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999876
No 31
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.6e-18 Score=120.37 Aligned_cols=73 Identities=25% Similarity=0.368 Sum_probs=70.4
Q ss_pred CEEEEEcCCCCEE-EEE-EcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAF-TIE-VGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~-~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+|++.+|+++ .++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 999999999999999999999999999999999999999999999999999999875
No 32
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=123.38 Aligned_cols=86 Identities=23% Similarity=0.346 Sum_probs=68.8
Q ss_pred CCCCCEEEEEEccCCCCCCCCCCCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe
Q 044874 157 LMDNAEIDVHVRPSPTATSTTSSGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY 236 (269)
Q Consensus 157 i~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~ 236 (269)
..+++++++.++.+ ..|+|+|+..+| +++.++|++++||.+||++|+++. |+|+++|+|+|
T Consensus 2 ~~~~~~~~~~~~~~-------------~~m~i~Vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gip~~~qrLi~ 62 (88)
T 4eew_A 2 MEPNDSTSTAVEEP-------------DSLEVLVKTLDS-QTRTFIVGAQMNVKEFKEHIAASV-----SIPSEKQRLIY 62 (88)
T ss_dssp -------------C-------------CEEEEEEEETTS-CEEEEEEETTCBHHHHHHHHHHHH-----TCCGGGEEEEE
T ss_pred CCCCCceEEeecCC-------------CeEEEEEEcCCC-CEEEEEECCCCCHHHHHHHHHHHh-----CCCHHHEEEEE
Confidence 34566777766654 369999999988 899999999999999999999987 99999999999
Q ss_pred cCeeecCCCccccccCCCCCEEEEec
Q 044874 237 KQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 237 ~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+|+.|+|+.+|++||| +|++||++.
T Consensus 63 ~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 63 QGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp TTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 9999999999999999 899999975
No 33
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=3.2e-18 Score=125.07 Aligned_cols=76 Identities=29% Similarity=0.437 Sum_probs=73.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCC-CccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDD-RDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+||+.++ ++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|+++++|+|+++.+||.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 7899999887 899999999999999999999999999999999999999999 999999999999999999999876
No 34
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=9.7e-18 Score=122.82 Aligned_cols=77 Identities=27% Similarity=0.479 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHH---hCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKY---QGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++.+|+.+.++|++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||.++++|+++++...+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~ 80 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV 80 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence 999999999999999999999999999999999 78999999999999999999999999999999999999876544
No 35
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=119.63 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=69.4
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+|+|+|+..+| +++.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus 4 ~m~i~Vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 4 PLSILVRNNKG-RSSTYEVRLTQTVAHLKQQVSGLE-----GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEEeCCC-CEEEEEECCcChHHHHHHHHHhhc-----CCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 59999999998 999999999999999999999987 9999999999999999999999999999999999985
No 36
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.75 E-value=5.8e-18 Score=127.56 Aligned_cols=76 Identities=32% Similarity=0.535 Sum_probs=73.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+.++|+++.++|++++||.+||++|++++++|+++|||+|+|+.|+|+.+|++|+|.++++|+|+++.+||
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999876
No 37
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=5.4e-18 Score=122.44 Aligned_cols=76 Identities=20% Similarity=0.423 Sum_probs=69.5
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|++.+| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|||++|++|+++. ++
T Consensus 1 M~I~Vk~~~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~-rl 73 (88)
T 4fbj_B 1 MLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKE-----GIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL-AL 73 (88)
T ss_dssp CEEEEEETTC-CEEEEECCTTCBHHHHHHHHHHHH-----CCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC-BC
T ss_pred CEEEEEcCCC-CEEEEEECCCCCHHHHHHHHHHHH-----CcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE-EC
Confidence 6899999998 999999999999999999999987 9999999999999999999999999999999999986 34
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~Gg 76 (88)
T 4fbj_B 74 RGG 76 (88)
T ss_dssp C--
T ss_pred CCC
Confidence 443
No 38
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.75 E-value=8e-18 Score=122.27 Aligned_cols=78 Identities=19% Similarity=0.362 Sum_probs=73.0
Q ss_pred CCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEE
Q 044874 179 SGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTI 258 (269)
Q Consensus 179 ~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i 258 (269)
++..+..|+|+|+..+| +++.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+.+|.+|||++|++|
T Consensus 11 ~~~~~~~m~i~Vk~~~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i 84 (91)
T 3v6c_B 11 GLVPRGSMQIFVNTLTG-THITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 84 (91)
T ss_dssp CCCCCCSEEEEEECTTS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGCEEEETTEECCTTCBTGGGTCCTTCEE
T ss_pred CCCCCCeEEEEEEeCCC-CEEEEEECCCCCHHHHHHHHHhhh-----CCChhhEEEEECCeECCCcCcHHHCCCCCCCEE
Confidence 44556789999999988 999999999999999999999987 999999999999999999999999999999999
Q ss_pred EEec
Q 044874 259 EIFN 262 (269)
Q Consensus 259 ~l~~ 262 (269)
+++.
T Consensus 85 ~l~~ 88 (91)
T 3v6c_B 85 HLVL 88 (91)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9984
No 39
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=9.5e-18 Score=120.89 Aligned_cols=78 Identities=19% Similarity=0.403 Sum_probs=72.2
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
..|+|+|+...| +++.++|++++||.+||++|+++. ++|++.|+|+|+|+.|+|+.+|++|+|++|++|+++.
T Consensus 11 ~~m~i~vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~- 83 (88)
T 3dbh_I 11 GSMLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKE-----GIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL- 83 (88)
T ss_dssp CCEEEEEECTTS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC-
T ss_pred CcEEEEEEcCCC-CEEEEEECCCCCHHHHHHHHHHHH-----CcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE-
Confidence 469999999988 999999999999999999999987 9999999999999999999999999999999999986
Q ss_pred cccCC
Q 044874 264 SVTGG 268 (269)
Q Consensus 264 ~~~~~ 268 (269)
++.||
T Consensus 84 rl~GG 88 (88)
T 3dbh_I 84 RLRGG 88 (88)
T ss_dssp CCCCC
T ss_pred eCCCC
Confidence 44444
No 40
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=6e-18 Score=124.64 Aligned_cols=81 Identities=23% Similarity=0.464 Sum_probs=72.1
Q ss_pred CCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 181 MGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 181 ~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
++...|+|+|+..+| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|
T Consensus 18 ~~~~~m~I~Vk~~~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l 91 (98)
T 4hcn_B 18 FQGRPMQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 91 (98)
T ss_dssp ----CCEEEEEETTC-CEEEEECCTTCBHHHHHHHHHHHH-----CCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEE
T ss_pred CCCCeEEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHh-----CCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEE
Confidence 445679999999998 899999999999999999999987 99999999999999999999999999999999999
Q ss_pred ecCcccCC
Q 044874 261 FNGSVTGG 268 (269)
Q Consensus 261 ~~~~~~~~ 268 (269)
+. |+.||
T Consensus 92 ~~-rl~GG 98 (98)
T 4hcn_B 92 VL-RLRGG 98 (98)
T ss_dssp EC-BCSCC
T ss_pred EE-ecCCC
Confidence 86 45554
No 41
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=121.78 Aligned_cols=71 Identities=31% Similarity=0.474 Sum_probs=68.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|+|+||..+|+++.+++++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+| +|++||+++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 7899999999999999999999999999999999999999999999999999999999999 8999999875
No 42
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=123.81 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+. |+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++.+||
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999998 8999999999999999999999999999999999999999999999999999999999999999876
No 43
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.5e-18 Score=127.66 Aligned_cols=75 Identities=20% Similarity=0.443 Sum_probs=70.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+||.++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|||++|++|+|+++...
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 44
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.74 E-value=1.4e-17 Score=119.22 Aligned_cols=74 Identities=26% Similarity=0.442 Sum_probs=70.1
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHH---hCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKY---QGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~---~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
|+|+|+..+|+.+.+++++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++..
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 89999999999999999999999999999999999998765
No 45
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.7e-17 Score=119.41 Aligned_cols=81 Identities=15% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 181 MGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 181 ~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
.++..|+|+|+...| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|+|++|++|++
T Consensus 3 ~~~~~m~i~Vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l 76 (87)
T 1wh3_A 3 SGSSGIQVFVKNPDG-GSYAYAINPNSFILGLKQQIEDQQ-----GLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLIL 76 (87)
T ss_dssp CCSSSEEEEEEETTT-EEEEEEECSSSBHHHHHHHHHHHT-----CCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEE
T ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCChHHHHHHHHHHHh-----CCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEE
Confidence 345679999999988 999999999999999999999986 99999999999999999999999999999999999
Q ss_pred ecCcccCC
Q 044874 261 FNGSVTGG 268 (269)
Q Consensus 261 ~~~~~~~~ 268 (269)
+.+ +.||
T Consensus 77 ~~~-~~GG 83 (87)
T 1wh3_A 77 SKK-KGSG 83 (87)
T ss_dssp EEC-SCCC
T ss_pred EEe-ccCC
Confidence 864 3343
No 46
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.74 E-value=7.7e-18 Score=123.62 Aligned_cols=74 Identities=20% Similarity=0.411 Sum_probs=69.1
Q ss_pred CEEEEEcCCCCEEEE--EEcCCCCHHHHHHHH-HHHhCCCCCcEEEEEcCEEcCCCCccccCCC-CCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTI--EVGFFDTVLEIKEKI-EKYQGIPVPKQTLVFNGQVLQDDRDVEHCEI-LQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l--~v~~~~tV~~lK~~I-~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i-~~~~~i~l~~~~~ 74 (269)
|+|+||+++|+++++ +|++++||.+||++| ++..|+|+++|||+|+|+.|+|+.+|++|+| ++|++|+|+++.+
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvskp 97 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 97 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeCC
Confidence 799999999998777 556999999999999 8888999999999999999999999999999 9999999999764
No 47
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=7.7e-18 Score=122.87 Aligned_cols=77 Identities=12% Similarity=0.203 Sum_probs=73.0
Q ss_pred CEEEEEcCCCC--EEEEEEcCCCCHHHHHHHHHHHh--CCCCCcEEEEEcCEEcCCCCccccC--CCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGK--AFTIEVGFFDTVLEIKEKIEKYQ--GIPVPKQTLVFNGQVLQDDRDVEHC--EILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~--gi~~~~q~L~~~G~~L~d~~tL~~~--~i~~~~~i~l~~~~~ 74 (269)
|+|+||..+++ ++.+++++++||.+||++|++++ ++|+++|||+|+|+.|+|+.+|++| +|+++++|||+++.+
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999988 67777889999999999999999 9999999999999999999999999 999999999999999
Q ss_pred CCC
Q 044874 75 NKP 77 (269)
Q Consensus 75 ~g~ 77 (269)
+|+
T Consensus 88 gg~ 90 (93)
T 1wgd_A 88 SGP 90 (93)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 48
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.73 E-value=1.6e-17 Score=120.38 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=70.3
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..|+|+|+..+| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|.+||| +|++|+|+.
T Consensus 3 ~~~m~i~Vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~ 75 (90)
T 4dwf_A 3 PDSLEVLVKTLDS-QTRTFIVGAQMNVKEFKEHIAASV-----SIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 75 (90)
T ss_dssp CCEEEEEEEETTC-CEEEEEEETTCBHHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred CcEEEEEEEcCCC-CEEEEEECCCCCHHHHHHHHHHHh-----CCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEe
Confidence 3579999999998 999999999999999999999987 999999999999999999999999999 899999986
Q ss_pred Cc
Q 044874 263 GS 264 (269)
Q Consensus 263 ~~ 264 (269)
+.
T Consensus 76 ~~ 77 (90)
T 4dwf_A 76 RA 77 (90)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 49
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=1.1e-17 Score=119.63 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=69.8
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCee-ecCCCccccccCCCCCEEEEec
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNV-MDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~-L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.-|+|+|+...| +++.++|++++||++||++|+++. |+|+++|+|+|+|+. |+|+++|++|||++|++|+|+.
T Consensus 9 ~~~~i~vk~l~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNG-SSFELEVDYRDTLLVVKQKIERSQ-----HIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTS-CEEEEEECTTSBHHHHHHHHHHHH-----TCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCC-cEEEEEECCCChHHHHHHHHHHHH-----CcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEE
Confidence 459999999998 999999999999999999999997 999999999999999 9999999999999999999974
No 50
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.73 E-value=2.2e-17 Score=133.40 Aligned_cols=78 Identities=31% Similarity=0.510 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQ 78 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~ 78 (269)
|+|+||+.+|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++||++++.+||..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k 78 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG 78 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998863
No 51
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=118.13 Aligned_cols=73 Identities=25% Similarity=0.449 Sum_probs=70.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998875
No 52
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.72 E-value=1.2e-17 Score=125.75 Aligned_cols=75 Identities=24% Similarity=0.334 Sum_probs=69.9
Q ss_pred CEEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCC-------CCCEEEEEEe
Q 044874 1 MDVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEIL-------QNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~-------~~~~i~l~~~ 72 (269)
|+++|+...++ +++++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+++|++|||. ++++|+|+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 78888887776 599999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCC
Q 044874 73 SDNK 76 (269)
Q Consensus 73 ~~~g 76 (269)
.+|
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 544
No 53
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=4.5e-17 Score=119.23 Aligned_cols=77 Identities=12% Similarity=0.323 Sum_probs=70.7
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHh---hhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKL---HQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~---~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+|+|+...| +.+.++|++++||.+||++|++. + |+|+++|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus 1 M~I~Vk~~~g-~~~~~~v~~~~TV~~LK~~I~~~~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQ-QTFKIDIDPEETVKALKEKIESEKGKD-----AFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTC-CEEEEECCTTSBHHHHHHHHHHHHCTT-----TCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCC-CEEEEEECCCCHHHHHHHHHHhhcccC-----CCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 6899999888 89999999999999999999997 5 8999999999999999999999999999999999986
Q ss_pred CcccCC
Q 044874 263 GSVTGG 268 (269)
Q Consensus 263 ~~~~~~ 268 (269)
.+..++
T Consensus 75 ~~~~~~ 80 (95)
T 1uel_A 75 TKPKAV 80 (95)
T ss_dssp SSCCCC
T ss_pred eCCCCC
Confidence 554443
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=122.79 Aligned_cols=76 Identities=32% Similarity=0.535 Sum_probs=73.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+..+|+.+.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++.+||
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999876
No 55
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.72 E-value=8.2e-18 Score=137.52 Aligned_cols=77 Identities=30% Similarity=0.487 Sum_probs=75.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+||+++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..||.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999887
No 56
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=1.9e-17 Score=116.98 Aligned_cols=73 Identities=18% Similarity=0.348 Sum_probs=69.8
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
.|+|+|++..| +++.++|++++||.+||++|++++ |+|+++|+|+|+|+.|+|++||++|+|++||+|+++..
T Consensus 3 ~m~i~vk~~~g-~~~~~~v~~~~tv~~lk~~i~~~~-----gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 3 YIKLKVIGQDS-SEIHFKVKMTTHLKKLKESYCQRQ-----GVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEEECTTC-CEEEEEEETTSCTHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred eEEEEEECCCC-CEEEEEECCCChHHHHHHHHHHHH-----CCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 58999999998 899999999999999999999997 99999999999999999999999999999999999864
No 57
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.5e-17 Score=121.73 Aligned_cols=76 Identities=18% Similarity=0.356 Sum_probs=72.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+|+ +.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++..+++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 78999999886 79999999999999999999999999999999999999999999999999999999999998776
No 58
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.72 E-value=4e-17 Score=114.54 Aligned_cols=72 Identities=31% Similarity=0.565 Sum_probs=68.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7899999 89999999999999999999999999999999999999999999999999999999999998754
No 59
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.56 E-value=4.7e-19 Score=124.31 Aligned_cols=75 Identities=25% Similarity=0.471 Sum_probs=72.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998774
No 60
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.9e-17 Score=117.48 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=70.0
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
.|+|+|+..+| +++.+++++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++...
T Consensus 3 ~m~i~vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 3 HMRIVVKTLMG-RTIILEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp -CEEEEECGGG-CEEEEECCTTCBHHHHHHHHHHHH-----CCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred eEEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence 59999999988 899999999999999999999987 999999999999999999999999999999999998744
Q ss_pred cc
Q 044874 265 VT 266 (269)
Q Consensus 265 ~~ 266 (269)
..
T Consensus 77 ~G 78 (85)
T 3n3k_B 77 RG 78 (85)
T ss_dssp C-
T ss_pred cC
Confidence 33
No 61
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=7e-18 Score=124.90 Aligned_cols=93 Identities=15% Similarity=0.372 Sum_probs=66.9
Q ss_pred CCcccccCCCCCCEEEEEEccCCCCCCCCCCCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCC
Q 044874 149 HRSLRDCELMDNAEIDVHVRPSPTATSTTSSGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLP 228 (269)
Q Consensus 149 ~~~L~~y~i~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p 228 (269)
..++++|.| ++|.+|.++.. -.++|+|+. .| +++.++|++++||.+||++|+++. |+|
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~-------------m~i~I~Vk~-~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip 64 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGA-------------MSLNIHIKS-GQ-DKWEVNVAPESTVLQFKEAINKAN-----GIP 64 (101)
T ss_dssp -------------------------------------CCEEEEC-SS-CCCCBCCCTTSBHHHHHHHHHHHH-----SCC
T ss_pred cCCccccCC--CcceeecccCC-------------cEEEEEEEE-CC-EEEEEEeCCCCCHHHHHHHHHHHH-----CcC
Confidence 567889987 45566654433 247888886 66 899999999999999999999987 999
Q ss_pred CCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 229 QDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 229 ~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 65 ~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 65 VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp STTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred hHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 99999999999999999999999999999999865
No 62
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-17 Score=120.19 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=65.9
Q ss_pred eeEEEEecCCCeEEEEEec--CCCcHHHHHHHH-HHhhhccCCCCCCCceEEEecCeeecCCCccccccC-CCCCEEEEe
Q 044874 186 LKLLVLTQCGNKRIPVEVN--ASDNVSELRKEL-QKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHV-GQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~--~~~tV~~lK~~i-~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~ 261 (269)
|+|+|++..| +++.++|+ +++||.+||++| ++++ |+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+|+
T Consensus 2 mqI~VKtl~g-~~~~i~v~v~~~~TV~~lK~~I~~~~~-----gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~ 75 (87)
T 2lxa_A 2 VHLTLKKIQA-PKFSIEHDFSPSDTILQIKQHLISEEK-----ASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM 75 (87)
T ss_dssp CEEEEEECSS-SCEECCEECCTTCBHHHHHHHHHHTTS-----CSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEE
T ss_pred EEEEEEcCCC-CEEEEEEcCCCCCcHHHHHHHHHHHhc-----CCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEE
Confidence 7999999998 88888766 999999999999 8876 999999999999999999999999999 699999997
Q ss_pred c
Q 044874 262 N 262 (269)
Q Consensus 262 ~ 262 (269)
-
T Consensus 76 ~ 76 (87)
T 2lxa_A 76 I 76 (87)
T ss_dssp E
T ss_pred c
Confidence 4
No 63
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.4e-17 Score=122.23 Aligned_cols=77 Identities=22% Similarity=0.359 Sum_probs=74.0
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQ 78 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~ 78 (269)
|+|+|+.. |+.+.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++..+|++
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~~ 94 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGPS 94 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCSS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCCC
Confidence 78999998 999999999999999999999999999999999999999999999999999999999999999998763
No 64
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=118.63 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=69.8
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
.|+|+|++..| +++.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+++|++|||++|++|+++...
T Consensus 4 ~m~I~Vk~~~g-~~~~~~v~~~~TV~~LK~~I~~~~-----gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 4 PLSILVRNNKG-RSSTYEVRLTQTVAHLKQQVSGLE-----GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEEETTS-CEEEEEEESSSBHHHHHHHHHHHT-----CSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred cEEEEEECCCC-CEEEEEECCCCcHHHHHHHHHHHh-----CCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 59999999988 999999999999999999999987 999999999999999999999999999999999998654
Q ss_pred cc
Q 044874 265 VT 266 (269)
Q Consensus 265 ~~ 266 (269)
..
T Consensus 78 ~g 79 (88)
T 2hj8_A 78 RG 79 (88)
T ss_dssp --
T ss_pred CC
Confidence 33
No 65
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=2.4e-17 Score=120.68 Aligned_cols=63 Identities=10% Similarity=0.111 Sum_probs=59.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
+++.++|++++||.+||++|++++ |+|+++|+|||+|++|+|++||++|+|++|++|+++..|
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~-----gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lr 92 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETF-----GLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK 92 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHT-----TCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHH-----CcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 789999999999999999999997 999999999999999999999999999999999888543
No 66
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.71 E-value=3.4e-17 Score=120.38 Aligned_cols=80 Identities=20% Similarity=0.368 Sum_probs=72.9
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+..|+|+|++..| +++.++|++++||.+||++|++++ |+|+++|+|+|+|+.|+|++||++|+|++||+|+++
T Consensus 18 ~~~~m~I~Vk~~~g-~~~~l~v~~~~tv~~lK~~i~~~~-----gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~ 91 (97)
T 1wyw_B 18 EGEYIKLKVIGQDS-SEIHFKVKMTTHLKKLKESYCQRQ-----GVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVY 91 (97)
T ss_dssp -CCEEEEEEECTTC-CEEEEEEETTSCTHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEE
T ss_pred CCCcEEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEE
Confidence 34569999999998 899999999999999999999997 999999999999999999999999999999999998
Q ss_pred cCcccCC
Q 044874 262 NGSVTGG 268 (269)
Q Consensus 262 ~~~~~~~ 268 (269)
.+ ..||
T Consensus 92 ~~-~~GG 97 (97)
T 1wyw_B 92 QE-QTGG 97 (97)
T ss_dssp ES-SSCC
T ss_pred Ee-cCCC
Confidence 64 4443
No 67
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=119.72 Aligned_cols=81 Identities=15% Similarity=0.267 Sum_probs=68.8
Q ss_pred CCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEE
Q 044874 179 SGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTI 258 (269)
Q Consensus 179 ~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i 258 (269)
|...+..|+|+|+. | +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+++|++|+|++|++|
T Consensus 13 ~~~~~~~m~I~Vk~--g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI 84 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--Q-ELHTFEVTGQETVAQIKAHVASLE-----GIAPEDQVVLLAGAPLEDEATLGQCGVEALTTL 84 (93)
T ss_dssp -------CEEEEES--S-SEEEEECCSSCBHHHHHHHHHHHH-----TCCGGGCEEEETTEECCTTSBHHHHTCCSSCEE
T ss_pred CCCCCCcEEEEEEC--C-CEEEEEeCCCCcHHHHHHHHHHHh-----CcChhHEEEEECCEECCCCCcHHHCCCCCCCEE
Confidence 33445679999997 6 899999999999999999999987 999999999999999999999999999999999
Q ss_pred EEecCcccCC
Q 044874 259 EIFNGSVTGG 268 (269)
Q Consensus 259 ~l~~~~~~~~ 268 (269)
+|+. |+.||
T Consensus 85 ~lv~-rl~GG 93 (93)
T 2l7r_A 85 EVAG-RMLGG 93 (93)
T ss_dssp EEEC-CCCCC
T ss_pred EEEE-ecCCC
Confidence 9986 45554
No 68
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=6.7e-17 Score=115.53 Aligned_cols=75 Identities=21% Similarity=0.371 Sum_probs=70.5
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
.|+|+|+..+| +++.+++++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++...
T Consensus 3 ~m~i~vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~ 76 (85)
T 3mtn_B 3 HMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRL 76 (85)
T ss_dssp CEEEEEECTTS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred eEEEEEEcCCC-CEEEEEECCCCCHHHHHHHHHHHH-----CcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence 59999999988 999999999999999999999987 999999999999999999999999999999999998643
Q ss_pred c
Q 044874 265 V 265 (269)
Q Consensus 265 ~ 265 (269)
.
T Consensus 77 ~ 77 (85)
T 3mtn_B 77 R 77 (85)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=7e-17 Score=117.93 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=71.3
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC-CccccccCCCCCEEEEe
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD-RSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~ 261 (269)
...|+|+|+...+ ++.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+ ++|++|||++|++|+|+
T Consensus 13 ~~~~~I~Vk~~~~--~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv 85 (94)
T 2kan_A 13 VRKIHVTVKFPSK--QFTVEVDRTETVSSLKDKIHIVE-----NTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVF 85 (94)
T ss_dssp SCCEEEEEECSSC--EEEEEECTTCBHHHHHHHHHHHS-----SSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEE
T ss_pred CCCEEEEEEcCCc--EEEEEECCCCcHHHHHHHHHHHH-----CcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEE
Confidence 3459999999765 88999999999999999999986 9999999999999999999 99999999999999998
Q ss_pred cCcccCC
Q 044874 262 NGSVTGG 268 (269)
Q Consensus 262 ~~~~~~~ 268 (269)
.+..+|+
T Consensus 86 ~r~~gg~ 92 (94)
T 2kan_A 86 LKSINRA 92 (94)
T ss_dssp ECCCSSC
T ss_pred EeCCCCC
Confidence 7554443
No 70
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.71 E-value=4.1e-17 Score=122.30 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=71.4
Q ss_pred CEEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCC-------CCEEEEEEe
Q 044874 1 MDVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQ-------NSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~-------~~~i~l~~~ 72 (269)
|.+|++...++ ++.+++++++||.+||++|+.++|+|+++|||+|+|+.|+|++||++|||.+ +++|+|+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78899887777 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCC
Q 044874 73 SDNK 76 (269)
Q Consensus 73 ~~~g 76 (269)
..+.
T Consensus 81 ~~~~ 84 (118)
T 4ajy_B 81 ADDT 84 (118)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8543
No 71
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=7.3e-17 Score=112.73 Aligned_cols=76 Identities=20% Similarity=0.420 Sum_probs=69.1
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|+..+| +++.+++++++||.+||++|++.. ++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+ +
T Consensus 1 M~i~vk~~~g-~~~~~~v~~~~tv~~lK~~i~~~~-----~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~-~ 73 (76)
T 1ndd_A 1 MLIKVKTLTG-KEIEIDIEPTDKVERIKERVEEKE-----GIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA-L 73 (76)
T ss_dssp CEEEEECTTS-CEEEEECCTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC-C
T ss_pred CEEEEECCCC-CEEEEEECCCChHHHHHHHHHHHH-----CcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe-C
Confidence 6899999888 899999999999999999999987 99999999999999999999999999999999999863 4
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~GG 76 (76)
T 1ndd_A 74 RGG 76 (76)
T ss_dssp C--
T ss_pred CCC
Confidence 443
No 72
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=5.9e-17 Score=116.93 Aligned_cols=77 Identities=25% Similarity=0.465 Sum_probs=69.0
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
-|+|+|++.+| +++.+++++++||++||++|+++. ++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 9 ~~~i~v~~~~G-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r- 81 (88)
T 1sif_A 9 GLQLFIKTLTG-KTFTVEMEPSDTIENLKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR- 81 (88)
T ss_dssp -CEEEEEETTS-CEEEEECCTTSBHHHHHHHHHHHH-----CCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC--
T ss_pred ceEEEEEeCCC-CEEEEEECCCChHHHHHHHHHHHH-----CcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe-
Confidence 49999999998 999999999999999999999987 99999999999999999999999999999999999864
Q ss_pred ccCC
Q 044874 265 VTGG 268 (269)
Q Consensus 265 ~~~~ 268 (269)
..||
T Consensus 82 ~~GG 85 (88)
T 1sif_A 82 LRGG 85 (88)
T ss_dssp ----
T ss_pred CCCC
Confidence 4444
No 73
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=1.2e-16 Score=115.41 Aligned_cols=76 Identities=18% Similarity=0.289 Sum_probs=69.9
Q ss_pred CcceeEEEEecCCCeEEEE-EecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 183 PRKLKLLVLTQCGNKRIPV-EVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l-~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
...|+|+|+...|.+++.+ +|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~-----gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 79 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALF-----DVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLL 79 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHS-----CCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHH-----CcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEE
Confidence 3569999999887458999 5999999999999999986 999999999999999999999999999999999998
Q ss_pred cC
Q 044874 262 NG 263 (269)
Q Consensus 262 ~~ 263 (269)
..
T Consensus 80 ~~ 81 (89)
T 1wy8_A 80 VR 81 (89)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 74
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=9.1e-17 Score=114.98 Aligned_cols=74 Identities=14% Similarity=0.297 Sum_probs=69.2
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHh---hhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKL---HQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~---~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.|+|+|+...| +.+.++|++++||.+||++|++. + |+|+++|+|+|+|+.|+|+.+|++|||++|++|+++
T Consensus 5 ~m~i~vk~~~g-~~~~~~v~~~~TV~~lK~~i~~~~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~ 78 (85)
T 2wyq_A 5 AVTITLKTLQQ-QTFKIRMEPDETVKVLKEKIEAEKGRD-----AFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 78 (85)
T ss_dssp CEEEEEEETTS-CEEEEEECTTSBHHHHHHHHHHHHCTT-----TCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEE
T ss_pred eEEEEEEECCC-CEEEEEECCCCCHHHHHHHHHhhcccc-----CCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEE
Confidence 59999999988 89999999999999999999997 5 899999999999999999999999999999999998
Q ss_pred cCc
Q 044874 262 NGS 264 (269)
Q Consensus 262 ~~~ 264 (269)
.+.
T Consensus 79 ~~~ 81 (85)
T 2wyq_A 79 VTK 81 (85)
T ss_dssp EC-
T ss_pred EcC
Confidence 644
No 75
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.70 E-value=5.3e-17 Score=119.14 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=67.3
Q ss_pred cceeEEEEecCCCeEEEE--EecCCCcHHHHHHHH-HHhhhccCCCCCCCceEEEecCeeecCCCccccccC-CCCCEEE
Q 044874 184 RKLKLLVLTQCGNKRIPV--EVNASDNVSELRKEL-QKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHV-GQGDTIE 259 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l--~v~~~~tV~~lK~~i-~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~ 259 (269)
..|+|+|++..| +++.+ +|++++||.+||++| ++.+ |+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+
T Consensus 18 ~~m~I~VKtl~g-~~~~i~v~v~~~~TV~~lK~~I~~~~~-----gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~ 91 (98)
T 4a20_A 18 AAVHLTLKKIQA-PKFSIEHDFSPSDTILQIKQHLISEEK-----ASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTIT 91 (98)
T ss_dssp CCEEEEEEECSS-SCEEEEEEECTTCBHHHHHHHHHHTTS-----CSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEE
T ss_pred CCEEEEEEcCCC-CEEEEEEecCCCChHHHHHHHHHHHhc-----CCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEE
Confidence 459999999998 77666 666999999999999 7765 999999999999999999999999999 9999999
Q ss_pred EecCc
Q 044874 260 IFNGS 264 (269)
Q Consensus 260 l~~~~ 264 (269)
++-+.
T Consensus 92 lmvsk 96 (98)
T 4a20_A 92 VMIKP 96 (98)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 98543
No 76
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.7e-17 Score=122.13 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=73.1
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++.+|+++.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|||.++++|+|+++....
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987754
No 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.6e-17 Score=121.94 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=66.9
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC---------------CceEEEecCeeec-CCCcc
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ---------------DGYFFIYKQNVMD-DDRSF 247 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~---------------~~q~l~~~g~~L~-d~~tL 247 (269)
..|+|+|++.+| +++.++|++++||++||++|++++ ++|+ ++|+|+|+|+.|+ |++||
T Consensus 6 ~~M~I~Vk~l~g-~~~~v~V~~~~TV~dLK~~I~~~~-----~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL 79 (105)
T 1v2y_A 6 SGMTVRVCKMDG-EVMPVVVVQNATVLDLKKAIQRYV-----QLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKL 79 (105)
T ss_dssp CSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHHH-----HHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBH
T ss_pred CcEEEEEEecCC-CEEEEEECCCChHHHHHHHHHHHh-----CCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCH
Confidence 569999999998 999999999999999999999987 6765 5689999999996 56899
Q ss_pred ccccCCCCCEEEEec
Q 044874 248 RWHHVGQGDTIEIFN 262 (269)
Q Consensus 248 ~~~~i~~~~~i~l~~ 262 (269)
++|||++|++|+++.
T Consensus 80 ~dygI~~g~~l~lv~ 94 (105)
T 1v2y_A 80 RDYGIRNRDEVSFIK 94 (105)
T ss_dssp HHHTCCSSEEEEEEE
T ss_pred HHcCCCCCCEEEEEe
Confidence 999999999999996
No 78
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=8.6e-17 Score=113.25 Aligned_cols=73 Identities=25% Similarity=0.361 Sum_probs=68.2
Q ss_pred ceeEEEEecCCCeEE-EEE-ecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 185 KLKLLVLTQCGNKRI-PVE-VNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~-~l~-v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.|+|+|++..| +++ .++ |++++||++||++|+++. |+|+++|+|+|+|+.|+|+++|++|||++|++|+++.
T Consensus 2 ~m~i~Vk~~~g-~~~~~l~~v~~~~tv~~lK~~i~~~~-----gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 2 SMWIQVRTMDG-RQTHTVDSLSRLTKVEELRRKIQELF-----HVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp CEEEEEEETTS-SCEEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred cEEEEEEECCC-CEEEEEeccCCCCCHHHHHHHHHHHH-----CcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 38999999988 664 899 999999999999999987 9999999999999999999999999999999999985
Q ss_pred C
Q 044874 263 G 263 (269)
Q Consensus 263 ~ 263 (269)
+
T Consensus 76 r 76 (78)
T 2faz_A 76 R 76 (78)
T ss_dssp C
T ss_pred e
Confidence 3
No 79
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.1e-16 Score=121.09 Aligned_cols=77 Identities=29% Similarity=0.493 Sum_probs=74.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
.+|+|+.++|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++..||.
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999886
No 80
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=3.6e-17 Score=121.35 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=73.0
Q ss_pred CEEEEEcCCC----CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCC-CccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRG----KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDD-RDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g----~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+|+..++ +++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|+++++|+|+.+.++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899998754 7999999999999999999999999999999999999999987 6899999999999999999998
Q ss_pred CCC
Q 044874 76 KPQ 78 (269)
Q Consensus 76 g~~ 78 (269)
|++
T Consensus 88 g~~ 90 (102)
T 1v5o_A 88 GLR 90 (102)
T ss_dssp CCS
T ss_pred CCC
Confidence 864
No 81
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=118.59 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=70.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||.++++|+|+++...
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 899999999999999999999999999999999999999999999999999999999999998764
No 82
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9e-17 Score=113.86 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=70.0
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..|+|+|+...| +.+.+++++++||++||++|++.. ++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus 5 ~~~m~i~vk~~~g-~~~~~~v~~~~tV~~LK~~i~~~~-----~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 5 SSGMQLTVKALQG-RECSLQVPEDELVSTLKQLVSEKL-----NVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp SSSEEEEEEETTS-CEEEEEECSSCBHHHHHHHHHHHT-----CCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred CCcEEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 3569999999888 899999999999999999999986 9999999999999999999999999999999999975
Q ss_pred C
Q 044874 263 G 263 (269)
Q Consensus 263 ~ 263 (269)
+
T Consensus 79 ~ 79 (81)
T 2dzi_A 79 K 79 (81)
T ss_dssp C
T ss_pred e
Confidence 3
No 83
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.4e-16 Score=118.90 Aligned_cols=77 Identities=18% Similarity=0.347 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQ 78 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~ 78 (269)
|+|+|+..+|+ +.++|++++||.+||++|++.+++++++|||+|+|+.|+|+.+|++|+|.++++|+|+++..+++.
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAM 94 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCC
Confidence 78999998886 799999999999999999999999999999999999999999999999999999999999998764
No 84
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=7.3e-17 Score=118.10 Aligned_cols=73 Identities=16% Similarity=0.179 Sum_probs=66.4
Q ss_pred EEEEcCC----CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 3 VIFEPQR----GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 3 i~vk~~~----g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|.|+..+ +++++++|++++||.+||++|++++|+|+++|+|+|+|++|+|+.+|++|+|+++++| +++++++.
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 5666666 7799999999999999999999999999999999999999999999999999999999 66666643
No 85
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.3e-17 Score=120.83 Aligned_cols=72 Identities=15% Similarity=0.302 Sum_probs=67.9
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|+|+...| +++.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 2 m~I~Vk~~~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~ 73 (106)
T 3m62_B 2 VSLTFKNFKK-EKVPLDLEPSNTILETKTKLAQSI-----SCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVS 73 (106)
T ss_dssp -CEEEECTTC-CEEEECCCTTSBHHHHHHHHHHTT-----TSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECC
T ss_pred EEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEc
Confidence 7899999888 899999999999999999999986 99999999999999999999999999999999999853
No 86
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.7e-17 Score=122.86 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=71.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC---------------CcEEEEEcCEEcC-CCCccccCCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV---------------PKQTLVFNGQVLQ-DDRDVEHCEILQN 64 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~---------------~~q~L~~~G~~L~-d~~tL~~~~i~~~ 64 (269)
|+|+|++++|++++++|++++||.+||++|++++++|+ ++|+|+|+|+.|. |+.+|++|||+++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999987 3579999999996 6799999999999
Q ss_pred CEEEEEEecCCCC
Q 044874 65 SRIQLLVASDNKP 77 (269)
Q Consensus 65 ~~i~l~~~~~~g~ 77 (269)
++|+++.+.++..
T Consensus 88 ~~l~lv~~lr~~~ 100 (105)
T 1v2y_A 88 DEVSFIKKLGQKS 100 (105)
T ss_dssp EEEEEEECSCSCC
T ss_pred CEEEEEehhccCC
Confidence 9999999998653
No 87
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.69 E-value=6.1e-17 Score=121.86 Aligned_cols=73 Identities=12% Similarity=0.209 Sum_probs=64.8
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCC-------CCCEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVG-------QGDTI 258 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~-------~~~~i 258 (269)
|.++++...+..++.++|++++||.+||++|++++ |+|+++|+|+|+|+.|+|++||++|||+ .++||
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~e-----gIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL 75 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGIL-----KRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATV 75 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHh-----CCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEE
Confidence 34555555553579999999999999999999998 9999999999999999999999999999 79999
Q ss_pred EEecC
Q 044874 259 EIFNG 263 (269)
Q Consensus 259 ~l~~~ 263 (269)
+|+.+
T Consensus 76 ~L~lr 80 (118)
T 2fnj_B 76 GLAFR 80 (118)
T ss_dssp EEEEB
T ss_pred EEEec
Confidence 99865
No 88
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=1.3e-16 Score=120.31 Aligned_cols=77 Identities=10% Similarity=0.136 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHH------HhCC--CCCcEEEEEcCEEcCCCCccccCCCCCC--CEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEK------YQGI--PVPKQTLVFNGQVLQDDRDVEHCEILQN--SRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi--~~~~q~L~~~G~~L~d~~tL~~~~i~~~--~~i~l~ 70 (269)
|+|+||+++|++++++|++++||.+||++|++ ++++ |+++|||+|+|+.|+|+.+|++|+|..+ .++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 6675 6999999999999999999999999765 678888
Q ss_pred EecCCCC
Q 044874 71 VASDNKP 77 (269)
Q Consensus 71 ~~~~~g~ 77 (269)
++...+.
T Consensus 97 lr~~~~~ 103 (116)
T 1wgh_A 97 ARETLPE 103 (116)
T ss_dssp ECSSCSS
T ss_pred ccCCCCC
Confidence 8877443
No 89
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.69 E-value=1.5e-16 Score=116.57 Aligned_cols=73 Identities=22% Similarity=0.413 Sum_probs=69.4
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
|+|+|+..+| +++.++|++++||.+||++|+++. ++|++.|+|+|+|+.|+|+.+|++|||++|++|+|+...
T Consensus 2 m~i~vk~~~g-~~~~~~v~~~~TV~~LK~~i~~~~-----gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~ 74 (96)
T 3k9o_B 2 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 74 (96)
T ss_dssp CEEEEEETTC-CEEEEECCTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred cEEEEEeCCC-CEEEEEECCCCCHHHHHHHHHhhh-----CCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 8999999988 999999999999999999999987 999999999999999999999999999999999998643
No 90
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.69 E-value=1.9e-16 Score=110.57 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=69.9
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|+..+| +.+.+++++++||.+||++|++.. ++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+ +
T Consensus 1 M~i~vk~~~g-~~~~i~v~~~~tv~~lK~~i~~~~-----~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~-~ 73 (76)
T 3a9j_A 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR-L 73 (76)
T ss_dssp CEEEEEETTS-CEEEEECCTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC-C
T ss_pred CEEEEEcCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe-C
Confidence 6899999888 899999999999999999999986 99999999999999999999999999999999999863 4
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~GG 76 (76)
T 3a9j_A 74 RGG 76 (76)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.3e-16 Score=122.51 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+.. |+.+.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++|+|.++++|+|+++..+|.
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 78999998 99999999999999999999999999999999999999999999999999999999999999998876
No 92
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.69 E-value=1.9e-16 Score=119.19 Aligned_cols=78 Identities=23% Similarity=0.451 Sum_probs=72.0
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
..|+|+|+...| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.
T Consensus 34 ~~m~I~Vk~~~G-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~- 106 (111)
T 3vdz_A 34 LAMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL- 106 (111)
T ss_dssp GCEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE-
T ss_pred ccEEEEEEeCCC-CEEEEEeCCCCCHHHHHHHHHHHh-----CCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE-
Confidence 469999999998 999999999999999999999987 9999999999999999999999999999999999986
Q ss_pred cccCC
Q 044874 264 SVTGG 268 (269)
Q Consensus 264 ~~~~~ 268 (269)
|+.||
T Consensus 107 rl~GG 111 (111)
T 3vdz_A 107 RLRGG 111 (111)
T ss_dssp CCCC-
T ss_pred ecCCC
Confidence 45544
No 93
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=5.1e-17 Score=122.39 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=74.0
Q ss_pred CEEEEEcC---CCCEEEEEEcC-CCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQ---RGKAFTIEVGF-FDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|++. +|+.+.+++++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++.+||
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 89999999998 999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 044874 77 P 77 (269)
Q Consensus 77 ~ 77 (269)
.
T Consensus 108 k 108 (111)
T 1we6_A 108 P 108 (111)
T ss_dssp S
T ss_pred C
Confidence 5
No 94
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=2.7e-16 Score=110.28 Aligned_cols=71 Identities=17% Similarity=0.404 Sum_probs=67.4
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|+|+. .| +.+.+++++++||.+||++|++.. |+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+
T Consensus 5 m~i~vk~-~g-~~~~~~v~~~~tV~~LK~~i~~~~-----~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQ-DKWEVNVAPESTVLQFKEAINKAN-----GIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TT-EEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHh-----CCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8899998 77 899999999999999999999987 99999999999999999999999999999999999864
No 95
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=121.70 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=70.6
Q ss_pred CEEEEEcCCCCEE-EEEEcCCCCHHHHHHHHH-----HHhCCCC--CcEEEEEcCEEcCCCCccccCCCCCC------CE
Q 044874 1 MDVIFEPQRGKAF-TIEVGFFDTVLEIKEKIE-----KYQGIPV--PKQTLVFNGQVLQDDRDVEHCEILQN------SR 66 (269)
Q Consensus 1 M~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~-----~~~gi~~--~~q~L~~~G~~L~d~~tL~~~~i~~~------~~ 66 (269)
|+|+||+.+|+.+ ++++++++||.+||++|+ +++++|+ ++|||+|+|+.|+|+.+|++|+|+.+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 7899999999988 799999999999999994 5668887 79999999999999999999999988 78
Q ss_pred EEEEEecCCCC
Q 044874 67 IQLLVASDNKP 77 (269)
Q Consensus 67 i~l~~~~~~g~ 77 (269)
+||++++++|.
T Consensus 97 mhlVlrl~g~~ 107 (126)
T 1se9_A 97 MHVIIQAPVTE 107 (126)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeccCCcc
Confidence 99999998765
No 96
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.68 E-value=1.3e-16 Score=119.62 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=66.4
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCC-------CCEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQ-------GDTI 258 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~-------~~~i 258 (269)
|.+|++...+..++.+++++++||.+||++|++++ |+|+++|+|+|+|+.|+|++||++|||++ ++||
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~-----giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl 75 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGIL-----KRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATV 75 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHH-----CCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEE
Confidence 45666666664689999999999999999999998 99999999999999999999999999999 9999
Q ss_pred EEecC
Q 044874 259 EIFNG 263 (269)
Q Consensus 259 ~l~~~ 263 (269)
+|+.+
T Consensus 76 ~Lvlr 80 (118)
T 4ajy_B 76 GLAFR 80 (118)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99864
No 97
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.67 E-value=2.4e-16 Score=116.29 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=68.3
Q ss_pred CEEEEEcCCC--CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCC-CCCCEEEEEEec
Q 044874 1 MDVIFEPQRG--KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEI-LQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i-~~~~~i~l~~~~ 73 (269)
|+|+|+...+ .+++++|++++||++||++|++++|+|+++|||+|+|+.++|+.+|++||| ++|+++||.+..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899998874 789999999999999999999999999999999999999999999999999 599999999754
No 98
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=119.40 Aligned_cols=79 Identities=23% Similarity=0.432 Sum_probs=71.9
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
...|+|+|+...| +.+.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 33 ~~~m~I~Vk~~~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 33 LLAMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SSCEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCC-CEEEEEeCCCCCHHHHHHHHHHHH-----CcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 4569999999888 899999999999999999999986 9999999999999999999999999999999999986
Q ss_pred CcccCC
Q 044874 263 GSVTGG 268 (269)
Q Consensus 263 ~~~~~~ 268 (269)
+ +.||
T Consensus 107 r-l~GG 111 (111)
T 2ojr_A 107 R-LRGG 111 (111)
T ss_dssp C-CCC-
T ss_pred e-CCCC
Confidence 3 4444
No 99
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.5e-16 Score=117.62 Aligned_cols=77 Identities=12% Similarity=0.232 Sum_probs=71.3
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
+...|+|+|+...| +++.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+++|++|||++|++|+|+
T Consensus 20 ~~~~m~I~Vk~~~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv 93 (106)
T 1ttn_A 20 SGYECQLRLRLSTG-KDLKLVVRSTDTVFHMKRRLHAAE-----GVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVI 93 (106)
T ss_dssp -CCSEEEEEEETTT-EEEEEEECTTSHHHHHHHHHHHTT-----CCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred CCCeEEEEEEcCCC-CEEEEEeCCCCcHHHHHHHHHHHH-----CcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEE
Confidence 34569999999888 999999999999999999999986 999999999999999999999999999999999998
Q ss_pred cCc
Q 044874 262 NGS 264 (269)
Q Consensus 262 ~~~ 264 (269)
...
T Consensus 94 ~~~ 96 (106)
T 1ttn_A 94 VSQ 96 (106)
T ss_dssp CCC
T ss_pred EeC
Confidence 643
No 100
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.67 E-value=3.8e-18 Score=131.84 Aligned_cols=77 Identities=31% Similarity=0.516 Sum_probs=0.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++..||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999886
No 101
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2.3e-16 Score=115.62 Aligned_cols=78 Identities=18% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
++..|+|+|+.. | +.+.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+++|++|||++|++|+|+
T Consensus 14 ~~~~m~i~Vk~~-g-~~~~~~v~~~~TV~~LK~~I~~~~-----gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~ 86 (96)
T 1wx8_A 14 SSRIIRVSVKTP-Q-DCHEFFLAENSNVRRFKKQISKYL-----HCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVV 86 (96)
T ss_dssp CSCEEEEEEECS-S-SEEEEEEETTCCHHHHHHHHHHHT-----CSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECC
T ss_pred CCCcEEEEEEEC-C-eEEEEEECCCCCHHHHHHHHHHHh-----CCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEE
Confidence 456799999987 6 899999999999999999999986 999999999999999999999999999999999998
Q ss_pred cCccc
Q 044874 262 NGSVT 266 (269)
Q Consensus 262 ~~~~~ 266 (269)
.....
T Consensus 87 ~~~~~ 91 (96)
T 1wx8_A 87 VRSHS 91 (96)
T ss_dssp BCCSS
T ss_pred EeCCC
Confidence 64433
No 102
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=3.7e-16 Score=113.88 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=68.3
Q ss_pred cceeEEEEecCCCe--EEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccc--cCCCCCEEE
Q 044874 184 RKLKLLVLTQCGNK--RIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWH--HVGQGDTIE 259 (269)
Q Consensus 184 ~~~~i~V~~~~g~~--~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i~ 259 (269)
..|+|+|+..++ + .+.+++++++||.+||++|++... -++|+++|+|+|+|+.|+|+.+|++| +|+++++||
T Consensus 6 ~~m~i~Vk~~~~-~~~~~~v~v~~~~TV~~lK~~I~~~~~---~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~ 81 (93)
T 1wgd_A 6 SGVTLLVKSPNQ-RHRDLELSGDRGWSVGHLKAHLSRVYP---ERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLH 81 (93)
T ss_dssp CCCEEEEECSSS-SCCCEEEECCTTSCHHHHHHHHHHHST---TCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEE
T ss_pred cEEEEEEEeCCC-CeEEEEEecCCCCcHHHHHHHHHHHhc---CCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEE
Confidence 459999999887 6 677888899999999999999631 18999999999999999999999999 999999999
Q ss_pred EecCc
Q 044874 260 IFNGS 264 (269)
Q Consensus 260 l~~~~ 264 (269)
|+.+.
T Consensus 82 lv~~~ 86 (93)
T 1wgd_A 82 LVCNV 86 (93)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 98643
No 103
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-16 Score=121.46 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHH------HhCC--CCCcEEEEEcCEEcCCCCccccCCCCCCC--EEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEK------YQGI--PVPKQTLVFNGQVLQDDRDVEHCEILQNS--RIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~------~~gi--~~~~q~L~~~G~~L~d~~tL~~~~i~~~~--~i~l~ 70 (269)
|+|+||+.+|++++++|++++||++||++|++ ++++ ++++|||+|+|+.|+|+.+|++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 7788 48999999999999999999999999766 78999
Q ss_pred EecCCCC
Q 044874 71 VASDNKP 77 (269)
Q Consensus 71 ~~~~~g~ 77 (269)
+++.++.
T Consensus 98 ~r~~~~~ 104 (125)
T 2gow_A 98 ARETLPE 104 (125)
T ss_dssp ECSCCSS
T ss_pred ecCCCCc
Confidence 8887543
No 104
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=8e-16 Score=115.96 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=66.2
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhcc-CCC--CCCCceEEEecCeeecCCCccccccCCCC--CE
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRY-HFH--LPQDGYFFIYKQNVMDDDRSFRWHHVGQG--DT 257 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~-~~~--~p~~~q~l~~~g~~L~d~~tL~~~~i~~~--~~ 257 (269)
...|+|+|++..| +++.++|++++||.+||++|++..... .-+ +|+++|+|||+|++|+|++||++|+|+.+ ++
T Consensus 14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 3569999999998 999999999999999999999931100 015 46999999999999999999999999877 56
Q ss_pred EEEec
Q 044874 258 IEIFN 262 (269)
Q Consensus 258 i~l~~ 262 (269)
|||+.
T Consensus 93 lhLvl 97 (116)
T 1wgh_A 93 MHLVA 97 (116)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 78774
No 105
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4.3e-16 Score=115.52 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=68.6
Q ss_pred cceeEEEEecCCC---eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC-CccccccCCCCCEEE
Q 044874 184 RKLKLLVLTQCGN---KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD-RSFRWHHVGQGDTIE 259 (269)
Q Consensus 184 ~~~~i~V~~~~g~---~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~ 259 (269)
..|+|+|+...+. +.+.++|++++||++||++|+++. ++|+++|+|+|+|+.|+|+ ++|++|||++|++|+
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~-----gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~ 80 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELES-----GVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVV 80 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHT-----CCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHH-----CcChHHeEEEECCEECCCCcccHHHCCCCCCCEEE
Confidence 4599999987653 689999999999999999999986 9999999999999999988 699999999999999
Q ss_pred EecC
Q 044874 260 IFNG 263 (269)
Q Consensus 260 l~~~ 263 (269)
|+..
T Consensus 81 l~~~ 84 (102)
T 1v5o_A 81 LLQK 84 (102)
T ss_dssp ECBC
T ss_pred EEEC
Confidence 9853
No 106
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.66 E-value=6.3e-16 Score=113.73 Aligned_cols=73 Identities=22% Similarity=0.413 Sum_probs=68.7
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
|+|+|+..+| +++.++|++++||.+||++|++.. ++|++.|+|+|+|+.|+|+.+|++|||++|++|+++.+.
T Consensus 1 M~I~Vk~~~g-~~~~~~v~~~~TV~~LK~~I~~~~-----gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTS-CEEEEECCTTCBHHHHHHHHHHHT-----CCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 6899999888 899999999999999999999986 999999999999999999999999999999999998643
No 107
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.65 E-value=8.2e-18 Score=133.16 Aligned_cols=77 Identities=31% Similarity=0.521 Sum_probs=0.0
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++.||.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999875
No 108
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=8.4e-16 Score=113.48 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=69.4
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+..|+|+|+...| + +.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+++|++|||++|++|+|+
T Consensus 19 ~~~~m~I~Vk~~~g-~-~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 19 SPHLIKVTVKTPKD-K-EDFSVTDTCTIQQLKEEISQRF-----KAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp CTTEEEEEEECSSC-E-EEEEEETTCBHHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred CCCeEEEEEEcCCC-c-EEEEECCCCcHHHHHHHHHHHH-----CcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 34679999999887 5 7899999999999999999987 999999999999999999999999999999999998
Q ss_pred cC
Q 044874 262 NG 263 (269)
Q Consensus 262 ~~ 263 (269)
.+
T Consensus 92 ~r 93 (100)
T 1yqb_A 92 IK 93 (100)
T ss_dssp EC
T ss_pred Ec
Confidence 53
No 109
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=113.15 Aligned_cols=74 Identities=18% Similarity=0.336 Sum_probs=69.2
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
..|+|+|+.. | +.+.++|++++||.+||++|++.. |+|++.|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 24 ~~m~I~Vk~~-g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 24 KIMKVTVKTP-K-EKEEFAVPENSSVQQFKEEISKRF-----KSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CCEEEEEECS-S-CEEEEEECSCCCHHHHHHHHHHHH-----TCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred CeEEEEEEeC-C-cEEEEEECCCCCHHHHHHHHHHHH-----CcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 4699999987 6 789999999999999999999987 99999999999999999999999999999999999864
Q ss_pred c
Q 044874 264 S 264 (269)
Q Consensus 264 ~ 264 (269)
.
T Consensus 97 ~ 97 (101)
T 2klc_A 97 T 97 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=7.5e-16 Score=124.35 Aligned_cols=76 Identities=24% Similarity=0.478 Sum_probs=70.2
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|++.+| +++.++|++++||.+||++|+++. |+|+++|+|+|+|+.|+|+++|++|||++|++|+++.+ +
T Consensus 1 MqI~Vk~~~G-k~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr-l 73 (169)
T 3l0w_B 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR-L 73 (169)
T ss_dssp CEEEEEETTS-CEEEEECCTTCBHHHHHHHHHHHH-----CCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC-C
T ss_pred CEEEEEeCCC-CEEEEEeCCCCCHHHHHHHHHHHH-----CcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE-e
Confidence 7899999998 999999999999999999999987 99999999999999999999999999999999999863 4
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 74 ~GG 76 (169)
T 3l0w_B 74 RGG 76 (169)
T ss_dssp CC-
T ss_pred ccc
Confidence 343
No 111
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.64 E-value=3.1e-16 Score=115.33 Aligned_cols=73 Identities=11% Similarity=0.189 Sum_probs=64.7
Q ss_pred cceeEEEEecCCCe--EEEEEecCCCcHHHHHHHHHHhhhccCCCCC-CCceEEEecCeeecCCCccccc--cCCCCCEE
Q 044874 184 RKLKLLVLTQCGNK--RIPVEVNASDNVSELRKELQKLHQRYHFHLP-QDGYFFIYKQNVMDDDRSFRWH--HVGQGDTI 258 (269)
Q Consensus 184 ~~~~i~V~~~~g~~--~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p-~~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i 258 (269)
..|+|+|+.+++ + ++.++|++++||.+||++|+++.. |.| +++|+|+|+|+.|+|+++|++| +|+++++|
T Consensus 22 ~~m~I~VK~~~g-~~~~i~l~v~~~~TV~~LK~~I~~~~~----g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~ti 96 (99)
T 2kdb_A 22 HPVTLIIKAPNQ-KYSDQTISCFLNWTVGKLKTHLSNVYP----SKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMV 96 (99)
T ss_dssp -CEEEEEECTTS-SSCCEEEEECTTSBHHHHHHHHHHHST----TCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEE
T ss_pred CeEEEEEEcCCC-CEEEEEEEcCCCCHHHHHHHHHHHHhc----CCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEE
Confidence 459999999888 5 679999999999999999998521 555 5999999999999999999999 99999999
Q ss_pred EEe
Q 044874 259 EIF 261 (269)
Q Consensus 259 ~l~ 261 (269)
+|+
T Consensus 97 hLv 99 (99)
T 2kdb_A 97 HLV 99 (99)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 112
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1.3e-15 Score=116.84 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=69.4
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
...|+|+|+.. | +.+.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+++|.+|||++|++|+|+.
T Consensus 30 ~~~m~I~Vk~~-g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 30 PKIIKVTVKTP-K-EKEEFAVPENSSVQQFKEAISKRF-----KSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp CCCEEEEEECS-S-CEEEEEECTTCCHHHHHHHHHHHH-----CSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred CCcEEEEEEeC-C-eEEEEEECCCCcHHHHHHHHHHHH-----CcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 35699999988 7 899999999999999999999987 9999999999999999999999999999999999986
Q ss_pred Ccc
Q 044874 263 GSV 265 (269)
Q Consensus 263 ~~~ 265 (269)
...
T Consensus 103 ~~~ 105 (125)
T 1j8c_A 103 KRD 105 (125)
T ss_dssp C--
T ss_pred ccC
Confidence 443
No 113
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.64 E-value=1.5e-15 Score=111.95 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=68.8
Q ss_pred CcceeEEEEecCC-CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccC-CCCCEEEE
Q 044874 183 PRKLKLLVLTQCG-NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHV-GQGDTIEI 260 (269)
Q Consensus 183 ~~~~~i~V~~~~g-~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l 260 (269)
.=+|+++|+...+ ..+++++|++++||.+||++|++++ |+|+++|||+|+|+.++|++||.+||| ++|+++||
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~-----Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL 96 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDY-----GFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYL 96 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEE
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHh-----CCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEE
Confidence 3468999999874 3789999999999999999999997 999999999999999999999999999 59999999
Q ss_pred ec
Q 044874 261 FN 262 (269)
Q Consensus 261 ~~ 262 (269)
+-
T Consensus 97 ~l 98 (105)
T 4dbg_A 97 YL 98 (105)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 114
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=1.6e-15 Score=113.17 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=68.5
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
...|+|+|+...| + +.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+++|.+|+|++|++|+|+.
T Consensus 15 ~~~m~I~Vk~~~g-~-~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-K-EDFSVTDTCTIQQLKEEISQRF-----KAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp SSEEEEEEECSSC-E-EEEEEETTCCHHHHHHHHHHHH-----TCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEE
T ss_pred CceEEEEEEeCCC-c-EEEEECCCCcHHHHHHHHHHHH-----CcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 4669999999877 5 7899999999999999999987 9999999999999999999999999999999999985
No 115
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=115.63 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=64.4
Q ss_pred CEEEEEcCCCC--EEEEEEcCCCCHHHHHHHHHHH-hCCC-CCcEEEEEcCEEcCCCCccccC--CCCCCCEEEEE
Q 044874 1 MDVIFEPQRGK--AFTIEVGFFDTVLEIKEKIEKY-QGIP-VPKQTLVFNGQVLQDDRDVEHC--EILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~-~gi~-~~~q~L~~~G~~L~d~~tL~~~--~i~~~~~i~l~ 70 (269)
|+|+||+.+|+ ++++++++++||.+||++|+++ .|+| +++|||+|+|+.|+|+.+|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999988 6799999999999999999997 5665 5999999999999999999999 99999999974
No 116
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.4e-16 Score=117.89 Aligned_cols=72 Identities=31% Similarity=0.565 Sum_probs=67.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+|+. +|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|||++|++|+|+.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 4688887 89999999999999999999999999999999999999999999999999999999999998653
No 117
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.64 E-value=7.7e-16 Score=116.62 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=71.5
Q ss_pred CEEEEEcC----------CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQ----------RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~----------~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
++|+|+.. +|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 35677764 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 044874 71 VASDNKP 77 (269)
Q Consensus 71 ~~~~~g~ 77 (269)
++.+||.
T Consensus 106 ~rl~GGk 112 (115)
T 1we7_A 106 LKERSGP 112 (115)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9999875
No 118
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=8.8e-16 Score=112.30 Aligned_cols=74 Identities=22% Similarity=0.187 Sum_probs=69.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCC-CccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDD-RDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~-~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+|+.+.++|++++||.+||++|+... +++|||+|+|+.|+|+ .+|++|+|.++++|||+++.+...
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~~ 82 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGAA 82 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCCC
Confidence 7899999999999999999999999999999987 8899999999999999 999999999999999999877544
No 119
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=5.4e-16 Score=112.30 Aligned_cols=74 Identities=19% Similarity=0.402 Sum_probs=69.7
Q ss_pred CEEEEEcCCCCEEEE-EEcCCCCHHHHHHHHHHHhCCCCCcEEEE---EcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTI-EVGFFDTVLEIKEKIEKYQGIPVPKQTLV---FNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l-~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+|+. +|+++.+ ++++++||.+||++|++++|+|+++|||+ |+|+.|+|+.+|++|+|.++++|+|+.....
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~~ 85 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRES 85 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCSS
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCcc
Confidence 7899996 7899999 99999999999999999999999999999 9999999999999999999999999877653
No 120
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=9.7e-16 Score=110.96 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=68.6
Q ss_pred CcceeEEEEecCCCeEEEE-EecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE---ecCeeecCCCccccccCCCCCEE
Q 044874 183 PRKLKLLVLTQCGNKRIPV-EVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI---YKQNVMDDDRSFRWHHVGQGDTI 258 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l-~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i 258 (269)
...|+|+|+. .| +++.+ ++++++||.+||++|+++. |+|+++|+|+ |+|+.|+|+.+|++|+|++|++|
T Consensus 5 ~~~m~i~Vk~-~g-~~~~i~~v~~~~TV~~lK~~I~~~~-----gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l 77 (90)
T 1v5t_A 5 SSGLPIIVKW-GG-QEYSVTTLSEDDTVLDLKQFLKTLT-----GVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKI 77 (90)
T ss_dssp CCSCCEEEEE-TT-EEEEECSCCSSSBHHHHHHHHHHHT-----CCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEE
T ss_pred CceEEEEEEE-CC-EEEEEEEeCCCCCHHHHHHHHHHHH-----CcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEE
Confidence 3469999996 66 89999 9999999999999999987 9999999999 99999999999999999999999
Q ss_pred EEecC
Q 044874 259 EIFNG 263 (269)
Q Consensus 259 ~l~~~ 263 (269)
+|+..
T Consensus 78 ~l~~~ 82 (90)
T 1v5t_A 78 MMMGT 82 (90)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99853
No 121
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=116.48 Aligned_cols=73 Identities=12% Similarity=0.213 Sum_probs=66.1
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHH------hhhccCCCC--CCCceEEEecCeeecCCCccccccCCCC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQK------LHQRYHFHL--PQDGYFFIYKQNVMDDDRSFRWHHVGQG 255 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~------~~~~~~~~~--p~~~q~l~~~g~~L~d~~tL~~~~i~~~ 255 (269)
..|+|+|++..| +++.++|++++||.+||++|++ ++ ++ |+++|+|||+|++|+|++||++|+|+++
T Consensus 16 ~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke-----~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~ 89 (125)
T 2gow_A 16 DMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEE-----EQVSSPNILRLIYQGRFLHGNVTLGALKLPFG 89 (125)
T ss_dssp TCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCC-----CTTCCGGGEEEESSSSEEESSCBTGGGCCCTT
T ss_pred CeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCccccc-----CCCCChHHEEEEECCcCCCCCCcHHHcCCCCC
Confidence 459999999998 9999999999999999999998 54 67 4889999999999999999999999988
Q ss_pred C--EEEEec
Q 044874 256 D--TIEIFN 262 (269)
Q Consensus 256 ~--~i~l~~ 262 (269)
+ +|+|+.
T Consensus 90 ~~~tlhlv~ 98 (125)
T 2gow_A 90 KTTVMHLVA 98 (125)
T ss_dssp SEEEEEEEE
T ss_pred CceEEEEEe
Confidence 7 677775
No 122
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=1.2e-15 Score=116.08 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=65.9
Q ss_pred ceeEEEEecCCCeEE-EEEecCCCcHHHHHHHHHHhhhccCCCCCC--CceEEEecCeeecCCCccccccCCCC------
Q 044874 185 KLKLLVLTQCGNKRI-PVEVNASDNVSELRKELQKLHQRYHFHLPQ--DGYFFIYKQNVMDDDRSFRWHHVGQG------ 255 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~-~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~--~~q~l~~~g~~L~d~~tL~~~~i~~~------ 255 (269)
.|+|++++.+| +.+ .+++++++||.+||++|.+..+....++|+ ++|+|||+|++|+|++||++|+|++|
T Consensus 16 ~~~i~~kt~~G-~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 16 QLEIKFRLTDG-SDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CEEEEEEETTS-CEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred cEEEEEEECCC-CEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 49999999999 777 799999999999999995432111127886 79999999999999999999999999
Q ss_pred CEEEEecC
Q 044874 256 DTIEIFNG 263 (269)
Q Consensus 256 ~~i~l~~~ 263 (269)
+|++|+.+
T Consensus 95 ~tmhlVlr 102 (126)
T 1se9_A 95 TTMHVIIQ 102 (126)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 67888864
No 123
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=7.3e-16 Score=112.93 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=68.2
Q ss_pred CEEEEEcCCCCEE-EEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAF-TIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+||. .|+++ .+++++++||.+||++|++++|+|+++|||+|+|+.|+|+ +|++|+|+++++|+|+.....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~ 81 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA 81 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence 7899995 68999 6999999999999999999999999999999999999999 999999999999999887653
No 124
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.63 E-value=1.2e-15 Score=124.59 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=72.5
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
.+|+|+|++.+| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+..
T Consensus 104 ~eMqI~VKtl~G-kt~~l~V~~s~TV~~LK~kI~~~~-----gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 104 YGGQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CCEEEEEECTTS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred cceeeeeecCCC-CEEEEEeCCCCcHHHHHHHHHhcc-----CCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 469999999998 999999999999999999999987 99999999999999999999999999999999999864
Q ss_pred cccCC
Q 044874 264 SVTGG 268 (269)
Q Consensus 264 ~~~~~ 268 (269)
+.||
T Consensus 178 -lrGG 181 (189)
T 3q3f_A 178 -LRGG 181 (189)
T ss_dssp -CCCC
T ss_pred -cCCC
Confidence 4444
No 125
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.63 E-value=1.1e-15 Score=114.94 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=69.9
Q ss_pred ceeEEEEec---CCCeEEEEEecC-CCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 185 KLKLLVLTQ---CGNKRIPVEVNA-SDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 185 ~~~i~V~~~---~g~~~~~l~v~~-~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
.|+|+|+.. .| +.+.++|++ ++||.+||++|++.. |+|+++|+|+|+|+.|+|+++|++|||++|++|+|
T Consensus 27 ~i~i~Vk~~~~~~g-~~~~l~v~~l~~TV~~LK~~I~~~~-----gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l 100 (111)
T 1we6_A 27 PATIRVSKPNENDG-QFMEITVQSLSENVGSLKEKIAGEI-----QIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTL 100 (111)
T ss_dssp CEEEEECCTTCSSS-CCEEEEESCSSSBHHHHHHHHHHHT-----TCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEE
T ss_pred cEEEEEEecccCCC-cEEEEEecCCCCcHHHHHHHHHHHH-----CCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEE
Confidence 489999987 66 889999998 999999999999986 99999999999999999999999999999999999
Q ss_pred ecCcccCC
Q 044874 261 FNGSVTGG 268 (269)
Q Consensus 261 ~~~~~~~~ 268 (269)
+. ++.||
T Consensus 101 ~~-r~~GG 107 (111)
T 1we6_A 101 SL-RERSG 107 (111)
T ss_dssp EC-SSCCS
T ss_pred EE-EcCCC
Confidence 85 33443
No 126
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.2e-15 Score=111.81 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=66.3
Q ss_pred cceeEEEEecCCCeEE-EEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 184 RKLKLLVLTQCGNKRI-PVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~-~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
..|+|+|+. .| +.+ .+++++++||.+||++|+++. |+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+.
T Consensus 6 ~~m~i~Vk~-~g-~~~~~l~v~~~~TV~~lK~~I~~~t-----gip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 6 SGYSVTVKW-GK-EKFEGVELNTDEPPMVFKAQLFALT-----GVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CEEEEEEEE-TT-EEEEEEEEESSSCHHHHHHHHHHHT-----CCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred cEEEEEEEE-CC-EEEEEEEECCCCcHHHHHHHHHHHH-----CcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 469999995 66 899 699999999999999999987 9999999999999999999 99999999999999984
No 127
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-15 Score=114.24 Aligned_cols=73 Identities=21% Similarity=0.412 Sum_probs=69.8
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
+.+|+|+...| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 9 ~~~i~vk~l~G-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 9 EFQIFAKTLTG-KTITLEVESSDTIDNVKSKIQDKE-----GIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CCEEEEEETTC-CEEEEECCTTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred cEEEEEEeCCC-cEEEEEECCCCcHHHHHHHHHHHH-----CcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 58999999998 999999999999999999999987 99999999999999999999999999999999999863
No 128
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.5e-15 Score=108.84 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=66.2
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
++++..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+.++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 45667789999999999999999999999999999999999999999999999999999999999988653
No 129
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=1.7e-15 Score=113.23 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=69.4
Q ss_pred CEEEEEcCCC---CEEEEEEcC---------CCCHHHHHHHHHHHh--CCCCCc-EEEEEcCEEcCCCCccccCCCCCCC
Q 044874 1 MDVIFEPQRG---KAFTIEVGF---------FDTVLEIKEKIEKYQ--GIPVPK-QTLVFNGQVLQDDRDVEHCEILQNS 65 (269)
Q Consensus 1 M~i~vk~~~g---~~~~l~v~~---------~~tV~~lK~~I~~~~--gi~~~~-q~L~~~G~~L~d~~tL~~~~i~~~~ 65 (269)
|+|+||..++ +++.+++++ ++||.+||++|+..+ |+|+++ |||+|+|+.|+|+.+|++|+|++++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999998 889999554 599999999999999 999999 9999999999999999999999999
Q ss_pred EEEEEEecCC
Q 044874 66 RIQLLVASDN 75 (269)
Q Consensus 66 ~i~l~~~~~~ 75 (269)
+|+|+++...
T Consensus 93 ~i~lv~~~~~ 102 (107)
T 1x1m_A 93 TVHVLRKSWS 102 (107)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999988763
No 130
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.40 E-value=5.3e-17 Score=113.74 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=67.5
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|+|+|+..+| +++.+++++++||++||++|++.. |+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus 1 M~i~Vk~~~g-~~~~~~v~~~~tV~~lK~~i~~~~-----gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 1 MIVFVRFNSS-YGFPVEVDSDTSILQLKEVVAKQQ-----GVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 6899999888 899999999999999999999986 9999999999999999999999999999999999985
No 131
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.7e-15 Score=110.49 Aligned_cols=75 Identities=16% Similarity=0.263 Sum_probs=69.2
Q ss_pred EEEEE-cCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 2 DVIFE-PQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 2 ~i~vk-~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
.|+|+ ..+++.++++++++.||.+||++++.+.++|+++|+|+|+|+.|+|+.||++|||+++.+|||+++....
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 45555 6678899999999999999999999999999999999999999999999999999999999999987643
No 132
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.60 E-value=4.9e-15 Score=106.05 Aligned_cols=70 Identities=24% Similarity=0.443 Sum_probs=64.1
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
..+++...| +.+.+++++++||.+||++|++.. ++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.
T Consensus 13 ~~~~~~~~g-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 13 IKLTVKFGG-KSIPLSVSPDCTVKDLKSQLQPIT-----NVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEEETT-EEEEEEECTTSBHHHHHHHHHHHH-----CCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEEEEEECC-EEEEEEECCCCcHHHHHHHHHHHH-----CcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 344555677 999999999999999999999987 9999999999999999999999999999999999974
No 133
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.6e-15 Score=108.36 Aligned_cols=74 Identities=19% Similarity=0.362 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCEEEEEEcCC-----CCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCC-CCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVGFF-----DTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQD-DRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~-----~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d-~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
|+|+|+. .|+.+.++++++ +||.+||++|++.+|+|+++|||+|+|+.|+| +.+|++|+|.++++|+|+.+..
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 588999999995 99999999999999999999999999999998 6689999999999999987665
Q ss_pred C
Q 044874 75 N 75 (269)
Q Consensus 75 ~ 75 (269)
.
T Consensus 87 ~ 87 (92)
T 1wxv_A 87 S 87 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=6.6e-15 Score=107.59 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=66.0
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCC-CccccccCCCCCEEEEe
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDD-RSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~ 261 (269)
...|+|+|+...| +.+.++|++++||.+||++|+++ - +++|+|+|+|+.|+|+ ++|++|||++|++|||+
T Consensus 5 ~~~m~i~Vk~~~g-~~~~~~v~~~~TV~~LK~~i~~~------~--~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~ 75 (95)
T 1wia_A 5 SSGINVRLKFLND-TEELAVARPEDTVGTLKSKYFPG------Q--ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCH 75 (95)
T ss_dssp CCSEEEEEEETTT-EEEEEEECSSSBHHHHHHHHSSS------T--TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEE
T ss_pred CCeEEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHhh------C--cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEE
Confidence 3569999999888 89999999999999999999884 2 7899999999999999 99999999999999998
Q ss_pred cC
Q 044874 262 NG 263 (269)
Q Consensus 262 ~~ 263 (269)
..
T Consensus 76 ~~ 77 (95)
T 1wia_A 76 RS 77 (95)
T ss_dssp CC
T ss_pred EC
Confidence 53
No 135
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.5e-15 Score=109.08 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=67.7
Q ss_pred CCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 181 MGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 181 ~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
.+...|+|+|+. .+ +++.+++++++||.+||++|+++. ++|+++|+|+|+|+.|+ +.+|.+|+|++|++|+|
T Consensus 13 ~~~~~~~i~Vk~-~g-~~~~i~v~~~~TV~~LK~~I~~~t-----gip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~l 84 (95)
T 1v86_A 13 VGKELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSIT-----GLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMV 84 (95)
T ss_dssp CCCCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHHH-----CSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEE
T ss_pred CCCceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHH-----CcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEE
Confidence 344568999984 56 899999999999999999999987 99999999999999995 55999999999999999
Q ss_pred ecCc
Q 044874 261 FNGS 264 (269)
Q Consensus 261 ~~~~ 264 (269)
+...
T Consensus 85 v~~~ 88 (95)
T 1v86_A 85 VGST 88 (95)
T ss_dssp CCSS
T ss_pred Eecc
Confidence 8654
No 136
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=107.22 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=63.7
Q ss_pred ceeEEEEecCCCeEE--EE-EecCCCcHHHHHHHHHHh-hhccCCCCCCCceEEEec--CeeecCCCccccccCCCCCEE
Q 044874 185 KLKLLVLTQCGNKRI--PV-EVNASDNVSELRKELQKL-HQRYHFHLPQDGYFFIYK--QNVMDDDRSFRWHHVGQGDTI 258 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~--~l-~v~~~~tV~~lK~~i~~~-~~~~~~~~p~~~q~l~~~--g~~L~d~~tL~~~~i~~~~~i 258 (269)
.|+|+|++..| +.+ .+ +|++++||.+||++|++. + ++|+++|+|+|. |++|+|++||++|+|++|++|
T Consensus 10 ~M~I~Vk~~~g-~~~~~~l~~v~~~~TV~~lK~~I~~~~~-----~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl 83 (88)
T 2dzj_A 10 HYEVEILDAKT-REKLCFLDKVEPHATIAEIKNLFTKTHP-----QWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATL 83 (88)
T ss_dssp CEEEEEEESSS-CCCCEEEEEECSSCBHHHHHHHHHHHCS-----SSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEE
T ss_pred EEEEEEECCCC-CEEeeEEeEcCCCCcHHHHHHHHHHHhc-----CCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEE
Confidence 49999999987 443 58 999999999999999994 5 899999999976 999999999999999999998
Q ss_pred EE
Q 044874 259 EI 260 (269)
Q Consensus 259 ~l 260 (269)
|+
T Consensus 84 ~~ 85 (88)
T 2dzj_A 84 YF 85 (88)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 137
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=110.89 Aligned_cols=75 Identities=23% Similarity=0.188 Sum_probs=68.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|.++++.++|+++++++++++||++||++|++++||||++|+|+| .|+ |+|+.+|++|+|++|+++||++....+
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~~ 85 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLPP 85 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSCC
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCCC
Confidence 677888889999999999999999999999999999999999986 566 999999999999999999998876643
No 138
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1e-15 Score=111.91 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=67.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+ .+++++.+++++++||.+||++|+..+|+|+++|||+|.|+.| |+.+|++|+|+++++|+|+.+....
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~~~ 91 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGSTISG 91 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSSCCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEeccccC
Confidence 678898 4689999999999999999999999999999999999999999 5559999999999999998776543
No 139
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=1.5e-14 Score=105.02 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=66.6
Q ss_pred cceeEEEEecCCCeEEEEEecCC-----CcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecC-CCccccccCCCCCE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNAS-----DNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDD-DRSFRWHHVGQGDT 257 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~-----~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d-~~tL~~~~i~~~~~ 257 (269)
..|+|+|+. .+ +.+.+++++. +||.+||++|+++. |+|+++|+|+|+|+.|+| +.+|++|||++|++
T Consensus 6 ~~~~v~Vk~-~~-~~~~i~v~~~~~~~~~TV~~LK~~i~~~~-----gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~ 78 (92)
T 1wxv_A 6 SGLTVTVTH-SN-EKHDLHVTSQQGSSEPVVQDLAQVVEEVI-----GVPQSFQKLIFKGKSLKEMETPLSALGIQDGCR 78 (92)
T ss_dssp SSEEEEEEC-SS-SEEEEEECCCSSSSSCBHHHHHHHHHHHT-----CCCTTTCEEEETTEEECCSSSBHHHHTCCSSEE
T ss_pred CeEEEEEEE-CC-EEEEEEECCCcCcccCcHHHHHHHHHHHH-----CcCHHHEEEEECCeecCCCcccHHHCCCCCCCE
Confidence 459999997 45 7889999995 99999999999986 999999999999999999 56899999999999
Q ss_pred EEEecCc
Q 044874 258 IEIFNGS 264 (269)
Q Consensus 258 i~l~~~~ 264 (269)
|+|+...
T Consensus 79 i~l~~~~ 85 (92)
T 1wxv_A 79 VMLIGKK 85 (92)
T ss_dssp EEEESCC
T ss_pred EEEEecC
Confidence 9998643
No 140
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.7e-15 Score=107.80 Aligned_cols=76 Identities=9% Similarity=0.229 Sum_probs=68.8
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe--cCeeecCCCccccccCCCCCEEEEec
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY--KQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+|.++++.+.| +++.++|++++||++||++|++++ |+|+++|+|+| .|+ |+|+.+|++|+|++|++|+|+.
T Consensus 8 ~m~~~~vk~~G-k~~~v~v~~~~TV~~LK~~I~~~t-----gIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl 80 (100)
T 2dzm_A 8 RMLDFRVEYRD-RNVDVVLEDTCTVGEIKQILENEL-----QIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLT 80 (100)
T ss_dssp CEEEEEEECSS-CEEEEEEETTSBHHHHHHHHHHHH-----CCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECC
T ss_pred ceEEEEEEeCC-eEEEEEECCCCcHHHHHHHHHHHH-----CCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEe
Confidence 58888888888 999999999999999999999998 99999999997 566 9999999999999999999986
Q ss_pred CcccC
Q 044874 263 GSVTG 267 (269)
Q Consensus 263 ~~~~~ 267 (269)
..+++
T Consensus 81 ~~~~~ 85 (100)
T 2dzm_A 81 PDLPP 85 (100)
T ss_dssp SSSCC
T ss_pred cCCCC
Confidence 66553
No 141
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.57 E-value=5.2e-15 Score=106.00 Aligned_cols=66 Identities=6% Similarity=0.093 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe-------cCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 195 GNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY-------KQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 195 g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~-------~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
+.+.+.+.+++++||++||++|+.++ |+|+++|+|+| .|+.|+|+++|++|||++|++|||+....
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~-----Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHF-----ATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTS-----CCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHH-----CCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 34677899999999999999999987 99999999996 58999999999999999999999997543
No 142
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2.5e-15 Score=108.24 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=63.7
Q ss_pred CEEEEEcCCCCEE--EE-EEcCCCCHHHHHHHHHHH-hCCCCCcEEEEEc--CEEcCCCCccccCCCCCCCEEEE
Q 044874 1 MDVIFEPQRGKAF--TI-EVGFFDTVLEIKEKIEKY-QGIPVPKQTLVFN--GQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 1 M~i~vk~~~g~~~--~l-~v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~~--G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
|+|+|+++.|+.+ .+ +|++++||.+||++|++. .++||++|||+|. |+.|+|+.+|++|+|.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999988765 58 999999999999999995 8999999999987 99999999999999999999875
No 143
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=2.2e-14 Score=107.09 Aligned_cols=84 Identities=19% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCCCcceeEEEEecCC--CeEEEEEe--------cCC-CcHHHHHHHHHHhhhccCCCCCCCc-eEEEecCeeecCCCc
Q 044874 179 SGMGPRKLKLLVLTQCG--NKRIPVEV--------NAS-DNVSELRKELQKLHQRYHFHLPQDG-YFFIYKQNVMDDDRS 246 (269)
Q Consensus 179 ~~~~~~~~~i~V~~~~g--~~~~~l~v--------~~~-~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~~g~~L~d~~t 246 (269)
.+.+...|+|+|+..++ .+.+.+++ +++ +||.+||++|+++.. -++|+++ |+|+|+|+.|+|+++
T Consensus 6 ~~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip~~~~qrLi~~Gk~L~D~~t 82 (107)
T 1x1m_A 6 SGMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVPDPELIDLIYCGRKLKDDQT 82 (107)
T ss_dssp CCCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCCCSSSEEEEETTEECCTTCB
T ss_pred CCccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhc---cCCChhhcEEEEECCeECCCCCc
Confidence 34555679999998764 15778884 444 999999999999631 1899999 999999999999999
Q ss_pred cccccCCCCCEEEEecCcc
Q 044874 247 FRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 247 L~~~~i~~~~~i~l~~~~~ 265 (269)
|++|||++|++|+|+.+..
T Consensus 83 L~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 83 LDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp HHHHTCCTTCEEEEEESSC
T ss_pred HHHcCCCCCCEEEEEeCCC
Confidence 9999999999999986443
No 144
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.56 E-value=2.6e-16 Score=124.54 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=0.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|+..+| +++.++|++++||.+||++|++.. ++|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+..
T Consensus 1 MqI~VK~l~G-~~~~l~V~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCC-CEEEEEECCCCCHHHHHHHHHHHh-----CCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 6889999888 899999999999999999999986 9999999999999999999999999999999999986433
Q ss_pred c
Q 044874 266 T 266 (269)
Q Consensus 266 ~ 266 (269)
.
T Consensus 75 G 75 (152)
T 3u5c_f 75 G 75 (152)
T ss_dssp -
T ss_pred C
Confidence 3
No 145
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.56 E-value=1.9e-14 Score=108.85 Aligned_cols=68 Identities=16% Similarity=0.310 Sum_probs=62.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
.| +++.++|++++||.+||++|++.. |+|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+.. +.||
T Consensus 44 ~G-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~r-l~GG 111 (115)
T 1we7_A 44 NG-QGLVFTLPLTDQVSVIKVKIHEAT-----GMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALK-ERSG 111 (115)
T ss_dssp SS-EEEEEEECSCSBTHHHHHHHHHHS-----SCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEEC-CCSC
T ss_pred CC-eEEEEEECCCCCHHHHHHHHHHHH-----CCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE-cCCC
Confidence 45 899999999999999999999986 99999999999999999999999999999999999863 3444
No 146
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.9e-14 Score=106.17 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=65.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
+.+.|+...++..+.++++++.||.+||+++.+.. ++|+++|+|+|+|++|+|+.||++|||++|.||||+..
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~-----~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLL-----GIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHH-----TCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhh-----CCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 56666533333889999999999999999999975 99999999999999999999999999999999999854
No 147
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.56 E-value=2.1e-14 Score=104.70 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=64.8
Q ss_pred CcceeEEEEecCC-CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec--Ce---ee-cCCCccccccCCCC
Q 044874 183 PRKLKLLVLTQCG-NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK--QN---VM-DDDRSFRWHHVGQG 255 (269)
Q Consensus 183 ~~~~~i~V~~~~g-~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~--g~---~L-~d~~tL~~~~i~~~ 255 (269)
+.-++|+|+...+ ...+.+++++++||++||++|++++ |+|+++|+|+|. |+ .| +|+++|++|||++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~-----GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~g 87 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILT-----GGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDG 87 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHH-----CSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHH-----CcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCC
Confidence 3457888876554 2478999999999999999999997 999999999998 45 44 89999999999999
Q ss_pred CEEEEec
Q 044874 256 DTIEIFN 262 (269)
Q Consensus 256 ~~i~l~~ 262 (269)
++|+|++
T Consensus 88 stihlvD 94 (95)
T 2kjr_A 88 LRLHVVD 94 (95)
T ss_dssp CEEEEEE
T ss_pred CEEEEEC
Confidence 9999985
No 148
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.55 E-value=3e-16 Score=121.11 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=0.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
|+|+|++.+| +++.++|++++||.+||++|++.. |+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+..
T Consensus 1 M~I~Vk~~~G-~~~~l~v~~~~TV~~LK~~I~~~~-----gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTG-KTITLEVESSDTIDNVKSKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCC-CEEEEEeCCCCCHHHHHHHHHHHh-----CcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 6889999888 899999999999999999999986 99999999999999999999999999999999999863
No 149
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.55 E-value=3.5e-16 Score=127.12 Aligned_cols=72 Identities=21% Similarity=0.213 Sum_probs=0.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++++|++++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+.+|+ ++++|+|+++++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999999886
No 150
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=3.9e-14 Score=103.59 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=64.8
Q ss_pred cceeEEEEecCC-CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe---e----ecCCCccccccCCCC
Q 044874 184 RKLKLLVLTQCG-NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN---V----MDDDRSFRWHHVGQG 255 (269)
Q Consensus 184 ~~~~i~V~~~~g-~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~---~----L~d~~tL~~~~i~~~ 255 (269)
.-+.++|..... ...+.+++++++||++||++|++++ |+|+++|+|+|.|+ . ++|+++|.+|+|++|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~-----Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g 87 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKC-----GTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDG 87 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHH-----CCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSC
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHH-----CcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCC
Confidence 347777765433 2478999999999999999999998 99999999999983 3 599999999999999
Q ss_pred CEEEEecCc
Q 044874 256 DTIEIFNGS 264 (269)
Q Consensus 256 ~~i~l~~~~ 264 (269)
++|+|+..+
T Consensus 88 ~~Ihlvd~~ 96 (97)
T 2kj6_A 88 FRLHIIDLD 96 (97)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998754
No 151
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.53 E-value=4.2e-14 Score=103.11 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=61.9
Q ss_pred EEEEEcCCCC--EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc--CE---Ec-CCCCccccCCCCCCCEEEEE
Q 044874 2 DVIFEPQRGK--AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN--GQ---VL-QDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 2 ~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~--G~---~L-~d~~tL~~~~i~~~~~i~l~ 70 (269)
+|+|+..+++ .+++++++++||++||++|+..+|+|+++|||+|. |+ .| +|+.+|++|+|++|++|+|+
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 5778876654 89999999999999999999999999999999997 55 45 89999999999999999986
No 152
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.52 E-value=2.7e-14 Score=124.78 Aligned_cols=73 Identities=33% Similarity=0.561 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+||.++|+++.++|++++||.+||++|++++|+|+++|||+|+|+.|+|+.+|++|+|+++++|+|++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875
No 153
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=6.6e-14 Score=101.86 Aligned_cols=77 Identities=12% Similarity=0.241 Sum_probs=74.6
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++.+|+.+.+.|.+++++..|+++++++.|++++++||+|+|+.|.++.|+++|+++++++|+++++..||.
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999885
No 154
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.51 E-value=3.3e-14 Score=101.81 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE-------cCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 8 QRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF-------NGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 8 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-------~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
.+.+.+...+++++||++||++|+.++|+|+++|||+| .|+.|+|+.+|++|+|++|++|||+-..+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 45667889999999999999999999999999999997 47889999999999999999999986543
No 155
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.5e-13 Score=99.92 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+..|+|.|+...| +.+.++|++++++..|++.+++++ |+|+++++|+|.|+.|+++.|+++|++++||+|+++
T Consensus 4 ~~~~i~ikVk~~~g-~~i~~~v~~~t~l~kl~~~y~~~~-----gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~ 77 (94)
T 2io1_B 4 MNDHINLKVAGQDG-SVVQFKIKRHTPLSKLMKAYCERQ-----GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 77 (94)
T ss_dssp --CEEEEEEECTTS-CEEEEEEETTSCTHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEE
T ss_pred CCCeEEEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHh-----CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 44679999999888 899999999999999999999997 999999999999999999999999999999999999
Q ss_pred cCcccC
Q 044874 262 NGSVTG 267 (269)
Q Consensus 262 ~~~~~~ 267 (269)
.....|
T Consensus 78 ~~~~GG 83 (94)
T 2io1_B 78 QQQTGG 83 (94)
T ss_dssp ECCEES
T ss_pred EeccCC
Confidence 755544
No 156
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.49 E-value=5.3e-14 Score=126.23 Aligned_cols=79 Identities=13% Similarity=0.246 Sum_probs=68.5
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
..|+|+|++..| +++.++|++++||.+||++|++.. +..++|+++|+|+|+|++|+|+++|.+|+|++|++|+++-.
T Consensus 6 ~~M~I~VKtl~G-k~~~leV~~~~TV~~LK~~I~~~~--~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 6 SAVTITLKTLQQ-QTFKIRMEPDETVKVLKEKIEAEK--GRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCCEEEEETTT-EEEEECCCTTCBHHHHHHHHHHHT--CSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred ceEEEEEEeCCC-CEEEEEeCCCChHHHHHHHHHHHh--CcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 469999999988 999999999999999999999931 01279999999999999999999999999999999944433
Q ss_pred cc
Q 044874 264 SV 265 (269)
Q Consensus 264 ~~ 265 (269)
+.
T Consensus 83 k~ 84 (368)
T 1oqy_A 83 KT 84 (368)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 157
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=2.5e-13 Score=99.20 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=64.1
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC---ee----ecCCCccccccCCCCCE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ---NV----MDDDRSFRWHHVGQGDT 257 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g---~~----L~d~~tL~~~~i~~~~~ 257 (269)
.+.|.|+.......+.+++++++||++||++|++++ |+|+++|+|+|.| +. ++|+++|.+|||++|++
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~-----gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~ 81 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVV-----GSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCR 81 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHT-----CSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHH-----CCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCE
Confidence 377888765432268899999999999999999997 9999999999987 43 58999999999999999
Q ss_pred EEEecCc
Q 044874 258 IEIFNGS 264 (269)
Q Consensus 258 i~l~~~~ 264 (269)
|||+...
T Consensus 82 l~v~d~~ 88 (95)
T 1v6e_A 82 IHVIDHS 88 (95)
T ss_dssp EEEBCCS
T ss_pred EEEEECC
Confidence 9998643
No 158
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.48 E-value=4.1e-14 Score=126.97 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=71.0
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHH---HhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEE-EEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEK---YQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRI-QLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~---~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i-~l~~~~~~g 76 (269)
|+|+||+++|+++.|+|++++||.+||++|+. ++|+|+++|||+|+|+.|+|+.+|++|+|+++++| +|+.+.+++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999 57799999999999999999999999999999998 666666654
Q ss_pred C
Q 044874 77 P 77 (269)
Q Consensus 77 ~ 77 (269)
.
T Consensus 88 ~ 88 (368)
T 1oqy_A 88 Q 88 (368)
T ss_dssp S
T ss_pred C
Confidence 4
No 159
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.47 E-value=9.6e-14 Score=103.63 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=65.3
Q ss_pred cceeEEEEecCCCeEEEEEec-CCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe-----------e----ecCCCcc
Q 044874 184 RKLKLLVLTQCGNKRIPVEVN-ASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN-----------V----MDDDRSF 247 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~-~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~-----------~----L~d~~tL 247 (269)
..|.|.|+..+| +. .++|+ +++||.+||++|+++. ++|+++|+|+|.|+ . ++|+++|
T Consensus 6 ~~M~irvrs~~G-~~-~v~v~~~~~Tv~~LK~kI~~~~-----gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL 78 (107)
T 1wf9_A 6 SGTMLRVRSRDG-LE-RVSVDGPHITVSQLKTLIQDQL-----QIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRI 78 (107)
T ss_dssp CCEEEEEECSSC-EE-EEEECCTTSBHHHHHHHHHHHS-----CCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBG
T ss_pred CeEEEEEECCCC-CE-EEEECCCCCcHHHHHHHHHHHh-----CcCcccCEEEECCccccccCccccccccccCCCCCCH
Confidence 459999999998 44 78999 9999999999999986 99999999999988 4 5899999
Q ss_pred ccccCCCCCEEEEec
Q 044874 248 RWHHVGQGDTIEIFN 262 (269)
Q Consensus 248 ~~~~i~~~~~i~l~~ 262 (269)
.+|||++|++|||..
T Consensus 79 ~~~gi~~G~~L~l~~ 93 (107)
T 1wf9_A 79 SSLNLAHGSMVYLAY 93 (107)
T ss_dssp GGTCCCTTCEEECCC
T ss_pred HHCCCCCCCEEEEEe
Confidence 999999999999984
No 160
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.47 E-value=1.1e-13 Score=101.15 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=61.5
Q ss_pred EEEEEcCCC--CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC---EE----cCCCCccccCCCCCCCEEEEEE
Q 044874 2 DVIFEPQRG--KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG---QV----LQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G---~~----L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
.|+|+..+. ..+++++++++||++||++|+.++|+|+++|||+|.| +. ++|+.+|++|+|++|++|+|+-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 567775444 4799999999999999999999999999999999988 33 4899999999999999999874
No 161
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.45 E-value=5.2e-13 Score=96.42 Aligned_cols=77 Identities=12% Similarity=0.241 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++.+|+.+.+.|.+++++..|+++++++.|++++.+||+|+|+.|.++.|.++|+++++++|++++...||.
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999876
No 162
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.45 E-value=2.9e-13 Score=118.26 Aligned_cols=73 Identities=22% Similarity=0.423 Sum_probs=69.7
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
..|+|+|+...| +++.++|++++||.+||++|+++. ++|+++|+|+|+|+.|+|+++|++|+|++|++|+|+.
T Consensus 232 ~~MqI~VKtl~G-k~~~leV~~s~TV~dLK~kI~~~~-----GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 232 GSMQIFVKTLTG-KTITLEVEPSDTIENVKAKIQDKE-----GIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCEEEEEECTTS-CEEEEEECTTCBHHHHHHHHHHHH-----CCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEeCCC-CEEEEEECCCCcHHHHHHHHHHHH-----CcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 469999999888 899999999999999999999987 9999999999999999999999999999999999985
No 163
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.43 E-value=9e-14 Score=103.79 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=66.8
Q ss_pred CEEEEEcCCCCEEEEEEc-CCCCHHHHHHHHHHHhCCCCCcEEEEEcCE-----------E----cCCCCccccCCCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVG-FFDTVLEIKEKIEKYQGIPVPKQTLVFNGQ-----------V----LQDDRDVEHCEILQN 64 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~-----------~----L~d~~tL~~~~i~~~ 64 (269)
|+|+||+.+|+. .++|+ +++||.+||++|+.++++|+++|+|+|.|+ . ++|+.+|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999975 79999 999999999999999999999999999888 4 588999999999999
Q ss_pred CEEEEEEecC
Q 044874 65 SRIQLLVASD 74 (269)
Q Consensus 65 ~~i~l~~~~~ 74 (269)
++|||.....
T Consensus 87 ~~L~l~~~~~ 96 (107)
T 1wf9_A 87 SMVYLAYEGE 96 (107)
T ss_dssp CEEECCCSSC
T ss_pred CEEEEEeCCC
Confidence 9999887644
No 164
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=3.4e-13 Score=98.46 Aligned_cols=70 Identities=20% Similarity=0.159 Sum_probs=61.6
Q ss_pred EEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC---EE----cCCCCccccCCCCCCCEEEEEE
Q 044874 2 DVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG---QV----LQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G---~~----L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
.|+|+..+.. .+.+++++++||++||++|+.++|+|+++|||+|.| +. ++|+.+|++|+|+++++|||+-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5777765443 689999999999999999999999999999999986 43 5899999999999999999875
No 165
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.41 E-value=1.4e-12 Score=94.63 Aligned_cols=76 Identities=12% Similarity=0.252 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+..+|+.+.+.|.+++++..|+++++++.|++++.+||+|+|+.|.++.|.++|++.++++|++++...||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999998875
No 166
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.40 E-value=2.2e-14 Score=116.58 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=0.0
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|+|+|+++.| +++.++|++++||.+||++|++.+ |+|+++|+|+|+|++|+|++||+ ++|||+|+.+ +
T Consensus 1 MqI~VKtL~G-ktitLeV~~sdTV~~LK~kI~~ke-----GIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR-L 68 (189)
T 2xzm_9 1 MQVQVKTLEG-ETKIYTLEQGTSVLDLKSQISQDM-----GFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK-L 68 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEcCCC-CEEEEEECCcChHHHHHHHHHHHh-----CcChhHEEEEecCeECCCCCccc-----CCCEEEEEEe-c
Confidence 6899999998 999999999999999999999987 99999999999999999999999 9999999863 4
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
.||
T Consensus 69 rGG 71 (189)
T 2xzm_9 69 LGG 71 (189)
T ss_dssp ---
T ss_pred CCC
Confidence 444
No 167
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=2.2e-12 Score=93.08 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=72.9
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..|+|.|+...| +.+.++|.+++++..|++..+++. |+|+++++|+|.|+.|.++.|.++|++++||+|+++.
T Consensus 3 ~~~i~ikVk~~~g-~~v~~~vk~~t~l~kl~~~y~~~~-----gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 76 (91)
T 2io0_B 3 NDHINLKVAGQDG-SVVQFKIKRHTPLSKLMKAYCERQ-----GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 76 (91)
T ss_dssp -CEEEEEEECTTS-CEEEEEEETTSCTHHHHHHHHHHT-----TCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEECCCC-CEEEEEECCCChHHHHHHHHHHHh-----CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 3569999999888 899999999999999999999987 9999999999999999999999999999999999997
Q ss_pred CcccCC
Q 044874 263 GSVTGG 268 (269)
Q Consensus 263 ~~~~~~ 268 (269)
....|+
T Consensus 77 ~q~gg~ 82 (91)
T 2io0_B 77 QQTGGV 82 (91)
T ss_dssp CCCCCC
T ss_pred eccCCc
Confidence 655443
No 168
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.38 E-value=2.1e-12 Score=89.29 Aligned_cols=70 Identities=13% Similarity=0.283 Sum_probs=67.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|+|+|++.+|+.+.+.+.+++++..|+++++++.|++++.+||+|+|+.|.++.|.++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999986
No 169
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.38 E-value=1.9e-12 Score=98.79 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=63.3
Q ss_pred CEEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC---E---E-cCCCCccccCCCCCCCEEEEEEe
Q 044874 1 MDVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG---Q---V-LQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G---~---~-L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|.|+|+..++. .+.+++++++||++||++|+..+|+|+++|||+|.| + . ++|+.+|++|||++|++|||+..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35777766543 688999999999999999999999999999999987 3 3 48999999999999999999874
Q ss_pred c
Q 044874 73 S 73 (269)
Q Consensus 73 ~ 73 (269)
.
T Consensus 87 ~ 87 (122)
T 1t0y_A 87 T 87 (122)
T ss_dssp T
T ss_pred C
Confidence 3
No 170
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.37 E-value=2.4e-12 Score=98.28 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=64.4
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC---ee----ecCCCccccccCCCCCE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ---NV----MDDDRSFRWHHVGQGDT 257 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g---~~----L~d~~tL~~~~i~~~~~ 257 (269)
.+.|.|+...+...+.+++++++||++||++|+.+. |+|+++|+|+|.| +. ++|+++|.+|||++|++
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~-----Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ 80 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVV-----GTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYR 80 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHH-----CCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHh-----CCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCE
Confidence 477888765431268889999999999999999997 9999999999987 43 48999999999999999
Q ss_pred EEEecCcc
Q 044874 258 IEIFNGSV 265 (269)
Q Consensus 258 i~l~~~~~ 265 (269)
|||+....
T Consensus 81 ihvvd~~p 88 (122)
T 1t0y_A 81 IHAVDVTG 88 (122)
T ss_dssp EEEEECTT
T ss_pred EEEEeCCC
Confidence 99997443
No 171
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.37 E-value=6e-13 Score=95.33 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=64.3
Q ss_pred CEEEEEcCCCCEEEEE-EcCCCCHHHHHHHHHHHhCCCCCcEEEEEc--CEEcC---CCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIE-VGFFDTVLEIKEKIEKYQGIPVPKQTLVFN--GQVLQ---DDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~-v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~--G~~L~---d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|+|+||+.+|+. .++ +++++||.+||++|++++|+|+++|+|+|+ ++.|. |+.+|++|||.+|++|++....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 899999999964 577 999999999999999999999999999997 47774 6889999999999999987543
No 172
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.35 E-value=6.5e-12 Score=88.37 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=69.2
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
++..|+|.|+...|.+.+.++|.+++++..|++..+++. |+++++++|+|.|+.|.++.|.++|++++||+|+++
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~-----gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAM-----GLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHH-----TCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHh-----CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 345699999998883389999999999999999999987 999999999999999999999999999999999986
No 173
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.34 E-value=4.4e-12 Score=93.87 Aligned_cols=75 Identities=13% Similarity=0.186 Sum_probs=69.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+. +|+.+.+.|.+++++..|+++++++.|++++.+||+|+|+.|.++.|.++|+++++++|++++.+.||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 5789999 99999999999999999999999999999999999999999999999999999999999999998775
No 174
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=1.9e-12 Score=95.67 Aligned_cols=77 Identities=13% Similarity=0.283 Sum_probs=74.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+|+.+.+.|.+++++..|+++++++.|++++.+||+|+|+.|.++.|.++|+++++++|++++...||.
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999886
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.32 E-value=9.8e-12 Score=85.88 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=66.8
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
|+|.|+...| +.+.++|.+++++..|++..+++. |+|+++++|+|.|+.|.++.|.++|++++||+|+++
T Consensus 2 i~lkV~~~~g-~~v~~~v~~~t~l~kl~~~y~~~~-----gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDG-SVVQFKIKRHTPLSKLMKAYCERQ-----GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTS-CEEEEEECTTSCTHHHHHHHHHHH-----TCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCC-CEEEEEECCCChHHHHHHHHHHHh-----CCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 7889998888 899999999999999999999987 999999999999999999999999999999999986
No 176
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.31 E-value=1.1e-11 Score=87.13 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=67.1
Q ss_pred CEEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|+|+|+..+|+ .+.+.|.+++++..|+++++++.|++++++||+|+|+.|.++.|.++|+++++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67999999996 89999999999999999999999999999999999999999999999999999999985
No 177
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.30 E-value=1.8e-12 Score=114.48 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=66.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE---EcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV---FNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~---~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+||. +|+++++++++++||++||++|++++|+||++|||+ |+|+.|+|+.+|++|+|++|++|+|+.+...
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 4688884 799999999999999999999999999999999999 8999999999999999999999999987664
No 178
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=1.3e-11 Score=91.15 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=72.6
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..|+|.|+...| +.+.++|.+++++..|++..+++. ++++++++|+|.|+.|.++.|..+|++++||+|+++.
T Consensus 22 ~~~I~IkVk~~~g-~~i~~kVk~~t~l~kL~~~y~ek~-----gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 22 NDHINLKVAGQDG-SVVQFKIKRHTPLSKLMKAYCERQ-----GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp SCCEEEEEECSSS-CEEEEEECTTSCHHHHHHHHHHHH-----TCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCeEEEEEECCCC-CEEEEEEcCCChHHHHHHHHHHHh-----CCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 4579999999888 889999999999999999999987 9999999999999999999999999999999999997
Q ss_pred CcccC
Q 044874 263 GSVTG 267 (269)
Q Consensus 263 ~~~~~ 267 (269)
....|
T Consensus 96 ~q~GG 100 (104)
T 1wz0_A 96 QQTSG 100 (104)
T ss_dssp CCCCC
T ss_pred eccCC
Confidence 55444
No 179
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.29 E-value=5.5e-12 Score=90.24 Aligned_cols=71 Identities=10% Similarity=0.235 Sum_probs=62.2
Q ss_pred eeEEEEecCCCeEEEEE-ecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec--Ceeec---CCCccccccCCCCCEEE
Q 044874 186 LKLLVLTQCGNKRIPVE-VNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK--QNVMD---DDRSFRWHHVGQGDTIE 259 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~-v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~--g~~L~---d~~tL~~~~i~~~~~i~ 259 (269)
|+|.|+..+| +.. ++ +++++||.+||+.|+++. |+|+++|+|+|. ++.|+ |+.+|++|||.+|++|+
T Consensus 1 m~i~vr~~~G-~~~-v~~l~~~~Tv~~Lk~~I~~~~-----gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~ 73 (86)
T 2kzr_A 1 WRVRCKAKGG-THL-LQGLSSRTRLRELQGQIAAIT-----GIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLI 73 (86)
T ss_dssp CCEEEEETTE-EEE-ECSCCTTCBHHHHHHHHHHHT-----CCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEE
T ss_pred CEEEEEcCCC-CEE-eeecCCCCCHHHHHHHHHHHh-----CCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEE
Confidence 6789999988 544 77 999999999999999986 999999999986 48874 68899999999999999
Q ss_pred EecC
Q 044874 260 IFNG 263 (269)
Q Consensus 260 l~~~ 263 (269)
|...
T Consensus 74 v~~~ 77 (86)
T 2kzr_A 74 VEED 77 (86)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 9754
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.29 E-value=3e-12 Score=95.45 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=73.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|++.+|+.+.+.|.+++++..|+++++++.|++++++||+|+|+.|.++.|.++|+++++++|++++...||.
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999886
No 181
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.27 E-value=2.8e-11 Score=87.78 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=70.8
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..|+|.|+...| +.+.++|.+++++..|++..+++. |+++++++|+|.|+.|.++.|.++|++++||+|+++.
T Consensus 15 ~~~i~ikV~~~~g-~~i~~~v~~~t~l~kl~~~y~~~~-----gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~ 88 (93)
T 2d07_B 15 NDHINLKVAGQDG-SVVQFKIKRHTPLSKLMKAYCERQ-----GLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 88 (93)
T ss_dssp CCEEEEEEECTTS-CEEEEEEETTSCHHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEECCCC-CEEEEEEccCCHHHHHHHHHHHHh-----CCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 4579999998888 889999999999999999999987 9999999999999999999999999999999999986
Q ss_pred Cc
Q 044874 263 GS 264 (269)
Q Consensus 263 ~~ 264 (269)
..
T Consensus 89 ~q 90 (93)
T 2d07_B 89 QQ 90 (93)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 182
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.27 E-value=7.8e-12 Score=110.47 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=65.6
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE---ecCeeecCCCccccccCCCCCEEEE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI---YKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
..++|.|+. .| +++.+++++++||.+||++|+++. |+|+++|+|+ |+|+.|+|+.+|++|||++|++|+|
T Consensus 4 ~~i~i~Vk~-~g-~~~~v~v~~~~Tv~~lK~~I~~~t-----gVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L 76 (320)
T 3shq_A 4 KEVVVIVKW-SG-KEYPVDLTDQDTVEVLRHEIFRKT-----QVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMM 76 (320)
T ss_dssp CEEEEEEEE-TT-EEEEEEEETTSBHHHHHHHHHHHH-----CCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEE
T ss_pred ceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHH-----CcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEE
Confidence 358889985 66 899999999999999999999987 9999999999 9999999999999999999999999
Q ss_pred ecC
Q 044874 261 FNG 263 (269)
Q Consensus 261 ~~~ 263 (269)
+-+
T Consensus 77 ~gs 79 (320)
T 3shq_A 77 VGS 79 (320)
T ss_dssp ECC
T ss_pred Ecc
Confidence 843
No 183
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.26 E-value=4.7e-11 Score=88.29 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=71.2
Q ss_pred CCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEE
Q 044874 181 MGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 181 ~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
..+..|+|.|+. .| +.+.++|..++++..|++..+++. |+++++++|+|.|+.|.++.|.++|++++||+|++
T Consensus 27 ~~~~~I~IkV~~-~g-~~i~fkIk~tt~l~kL~~ay~ek~-----gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 27 KPETHINLKVSD-GS-SEIFFKIKKTTPLRRLMEAFAKRQ-----GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp CCCSEEEEEEEC-SS-CEEEEEEETTSCTHHHHHHHHHHH-----TCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred CCCCeEEEEEec-CC-cEEEEEeCCCCHHHHHHHHHHHHh-----CCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEE
Confidence 345679999998 87 899999999999999999999997 99999999999999999999999999999999999
Q ss_pred ecCc
Q 044874 261 FNGS 264 (269)
Q Consensus 261 ~~~~ 264 (269)
+...
T Consensus 100 ~~~q 103 (106)
T 2eke_C 100 HREQ 103 (106)
T ss_dssp EECC
T ss_pred Eeec
Confidence 8643
No 184
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.25 E-value=2.6e-11 Score=90.33 Aligned_cols=78 Identities=10% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+..|+|.|+...| +.+.++|.+++++..|++..+++. |+++++++|+|.|+.|.++.|.++|++++||+|+++
T Consensus 23 ~~~~I~IkVk~~~g-~~i~fkVk~~t~l~kL~~ay~ek~-----gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 23 ETALVAVKVVNADG-AEMFFRIKSRTALKKLIDTYCKKQ-----GISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp CCCCEEEEEEETTS-CCEEEEECTTSSHHHHHHHHHHHH-----TCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEE
T ss_pred CCCeEEEEEECCCC-CEEEEEECCCChHHHHHHHHHHHh-----CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 34579999999888 889999999999999999999997 999999999999999999999999999999999999
Q ss_pred cCcc
Q 044874 262 NGSV 265 (269)
Q Consensus 262 ~~~~ 265 (269)
....
T Consensus 97 ~~q~ 100 (110)
T 2k8h_A 97 VEQT 100 (110)
T ss_dssp CCCC
T ss_pred Eccc
Confidence 7543
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=2.7e-10 Score=83.23 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=64.5
Q ss_pred cceeEEEEe---cCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecC-------eee-cCCCccccccC
Q 044874 184 RKLKLLVLT---QCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQ-------NVM-DDDRSFRWHHV 252 (269)
Q Consensus 184 ~~~~i~V~~---~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g-------~~L-~d~~tL~~~~i 252 (269)
.-++|.|.. .++ ..+.+.+..++||.+||.+|+.. +|+|+..|+|.|.+ ..| +|+++|.+|||
T Consensus 8 ~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i~~~-----~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i 81 (97)
T 1wjn_A 8 QLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLLSRL-----LKVPVSELLLSYESSKMPGREIELENDLQPLQFYSV 81 (97)
T ss_dssp CEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHHHTT-----TTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTC
T ss_pred ccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHHHHH-----HCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCC
Confidence 347777764 344 78899999999999999999997 49999999999873 224 66789999999
Q ss_pred CCCCEEEEecCcccCC
Q 044874 253 GQGDTIEIFNGSVTGG 268 (269)
Q Consensus 253 ~~~~~i~l~~~~~~~~ 268 (269)
++|++|+|.....+.|
T Consensus 82 ~~G~~I~V~d~~p~s~ 97 (97)
T 1wjn_A 82 ENGDCLLVRWSGPSSG 97 (97)
T ss_dssp CTTCEEEEECCSSCCC
T ss_pred CCCCEEEEEecCCCCC
Confidence 9999999987665544
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.06 E-value=4.6e-10 Score=81.99 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=61.7
Q ss_pred EEEEEc---CCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcC------E-Ec-CCCCccccCCCCCCCEEEEE
Q 044874 2 DVIFEP---QRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNG------Q-VL-QDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 2 ~i~vk~---~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G------~-~L-~d~~tL~~~~i~~~~~i~l~ 70 (269)
+|+|+. .+|+.+...+++++||++||.+|+..+|+|+..|+|+|.+ . .| +|..+|++|++.+|++|++.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 456664 4678899999999999999999999999999999999973 2 25 67889999999999999988
Q ss_pred Eec
Q 044874 71 VAS 73 (269)
Q Consensus 71 ~~~ 73 (269)
...
T Consensus 91 d~~ 93 (97)
T 1wjn_A 91 WSG 93 (97)
T ss_dssp CCS
T ss_pred ecC
Confidence 643
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.03 E-value=2e-09 Score=80.31 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=69.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
++|+|+..+|+.+.+.|.+++++..|+...+++.|+++..+||+|+|+.|.++.|.++++++++++|.+++...
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46888888999999999999999999999999999999999999999999999999999999999999998754
No 188
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=1.3e-08 Score=75.93 Aligned_cols=75 Identities=17% Similarity=0.333 Sum_probs=69.4
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..++|.|+...| ..+.++|..++++..|+...+++. |++.++++|+|.|+.|.++.|.+++++++||+|.++.
T Consensus 38 ~~~I~LKV~~qdg-~ev~fkIk~tt~L~KLm~aY~er~-----Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~ 111 (115)
T 3kyd_D 38 GEYIKLKVIGQDS-SEIHFKVKMTTHLKKLKESYCQRQ-----GVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 111 (115)
T ss_dssp -CEEEEEEECTTS-CEEEEEEETTSCTHHHHHHHHHHH-----TCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCC-CEEEEEEccCChHHHHHHHHHHHh-----CCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 4678999998888 778999999999999999999987 9999999999999999999999999999999999985
Q ss_pred C
Q 044874 263 G 263 (269)
Q Consensus 263 ~ 263 (269)
.
T Consensus 112 ~ 112 (115)
T 3kyd_D 112 E 112 (115)
T ss_dssp C
T ss_pred e
Confidence 4
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1e-08 Score=83.91 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=71.7
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
++|+|+ .+|+...+.|.+++++..|+++.+++.|+++.++|++|+|+.|.++.|.+++++.+|++|++++...||-
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 367887 4899999999999999999999999999999999999999999999999999999999999999998875
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.80 E-value=9.8e-09 Score=82.55 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
++|+|+ .+|+.+.+.|.+++++..|++..+++.|+++..+|++|+|+.|.++.|.++++++++++|++++...||.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 357776 4899999999999999999999999999999999999999999999999999999999999999999886
No 191
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=3e-08 Score=81.19 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=71.5
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..++|.|+. .| ..+.++|.+++++..|++..+++. |++.++++|+|.|+.|.++.|.+++++++||+|+++.
T Consensus 27 ~~~I~LkV~~-~g-~~v~fkIk~~t~l~kL~~ay~er~-----Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~ 99 (200)
T 3pge_A 27 ETHINLKVSD-GS-SEIFFKIKKTTPLRRLMEAFAKRQ-----GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 99 (200)
T ss_dssp CCCEEEEEEC-SS-CEEEEEECTTSCTHHHHHHHHHHH-----SSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCeEEEEEec-CC-CEEEEEEecCCHHHHHHHHHHHHh-----CCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 4568999974 66 889999999999999999999997 9999999999999999999999999999999999997
Q ss_pred CcccCC
Q 044874 263 GSVTGG 268 (269)
Q Consensus 263 ~~~~~~ 268 (269)
.-+.|+
T Consensus 100 ~q~gg~ 105 (200)
T 3pge_A 100 EQIGGG 105 (200)
T ss_dssp CCSCCC
T ss_pred ccCcCc
Confidence 655544
No 192
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.8e-08 Score=79.12 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=70.2
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..++|.|+. +| ..+.++|..++++..|++..+++. |+++.+++|+|.|+.|.++.|.+++++++||+|.++.
T Consensus 55 ~e~InLKVk~-dG-~eV~FKIKrtTpL~KLmeAYcERq-----GL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~l 127 (207)
T 3tix_A 55 ETHINLKVSD-GS-SEIFFKIKKTTPLRRLMEAFAKRQ-----GKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHR 127 (207)
T ss_dssp CCEEEEEEEC-SS-CEEEEEEETTSCTHHHHHHHHHHT-----TCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECC
T ss_pred CCcEEEEEec-CC-CEEEEEEccCChHHHHHHHHHHHh-----CCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 4568888874 66 889999999999999999999987 9999999999999999999999999999999999997
Q ss_pred CcccC
Q 044874 263 GSVTG 267 (269)
Q Consensus 263 ~~~~~ 267 (269)
.-+.|
T Consensus 128 eQ~GG 132 (207)
T 3tix_A 128 EQIGG 132 (207)
T ss_dssp CCCTT
T ss_pred eccCC
Confidence 55544
No 193
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.61 E-value=4.9e-09 Score=85.40 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=1.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+| ..+|+...+.|.+++++..|+++.+++.|+++..+|++|+|+.+.++.|.+++++++|++|+++....||.
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ---------------------------------------------------------------------------CC
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 56788 67899999999999999999999999999999999999999999999999999999999999999999886
No 194
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.59 E-value=4.3e-07 Score=61.96 Aligned_cols=69 Identities=13% Similarity=0.284 Sum_probs=63.5
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCC-cEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVP-KQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
+.+++.....+.+.+.++.+|.+|-...+.+.+|+++ ..+|.|.|..|..+.++.+|++.+++.|.+++
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4566666677999999999999999999999999999 89999999999999999999999999999875
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.54 E-value=3.6e-08 Score=69.19 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=59.1
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEE-----cCCCCccccCCCCCCCEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQV-----LQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~-----L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|.|.|++.+| ++.+++++++|+.+|+++|++.++++++.|.+.++-.. +.++.+|+++||.+|+.+++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998877 67899999999999999999999999999888776543 347889999999999999864
No 196
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.49 E-value=1.8e-08 Score=82.08 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=0.9
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..|+|.| ..+| ..+.++|..++.+..|++..+++. |+++++++|+|.|+.+.++.|.+++++++||+|.++.
T Consensus 19 ~e~InLKV-~qdG-seV~FKIKrtTpL~KLM~AYcERq-----GLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~l 91 (227)
T 3v7o_A 19 ETHINLKV-SDGS-SEIFFKIKKTTPLRRLMEAFAKRQ-----GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCC-CEEEEEEccCChHHHHHHHHHHHh-----CCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEe
Confidence 45788999 6677 889999999999999999999987 9999999999999999999999999999999999997
Q ss_pred CcccCC
Q 044874 263 GSVTGG 268 (269)
Q Consensus 263 ~~~~~~ 268 (269)
.-+.|+
T Consensus 92 eQ~GG~ 97 (227)
T 3v7o_A 92 EQIGGL 97 (227)
T ss_dssp ----CC
T ss_pred cccCCc
Confidence 555543
No 197
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.40 E-value=2.5e-06 Score=61.73 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
.+..++|.|+...|.+.+.+.|..+.+...|...-+++. ++++...+|.|.|..|.++.|-++.++++||+|.++
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~-----g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAM-----GLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHT-----TCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHH-----CCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 346688888887773478899999999999999998875 899999999999999999999999999999999886
No 198
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.39 E-value=1.8e-06 Score=62.44 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=64.1
Q ss_pred EEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEE
Q 044874 2 DVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 2 ~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
.|.|+..+|+ .+.+.+..++++..|....+++.|+++...+++|+|..|.++.|.++++++++++|.+.
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 5777777884 88999999999999999999999999999999999999999999999999999999875
No 199
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.33 E-value=7.1e-06 Score=55.97 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=62.7
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC-ceEEEecCeeecCCCccccccCCCCCEEEEe
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD-GYFFIYKQNVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~-~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
-+.+..+.... ..+.++|.++.+|..|-+.-+.+. ++|++ ..+|.|.|..|+.+.++.+|++.+||.|.++
T Consensus 9 ~~~~~~~~~~~-~dl~f~I~~~t~v~kLi~ayc~~~-----~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 9 LITLLLRSSKS-EDLRLSIPVDFTVKDLIKRYCTEV-----KISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEEEEESSS-CCEEEEEETTSBHHHHHHHHHHHH-----TCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HHHHhhhccCC-CCeEEEecCCCCHHHHHHHHHHHc-----CCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 35556665554 688899999999999999999986 99999 7999999999999999999999999999876
No 200
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.33 E-value=4.1e-07 Score=63.73 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=56.2
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCee-----ecCCCccccccCCCCCEEE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNV-----MDDDRSFRWHHVGQGDTIE 259 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~-----L~d~~tL~~~~i~~~~~i~ 259 (269)
.|.|-++..+| ++.+++++++||.+|+++|.+.- +++.+.|.+.+.... +.++.+|++.||+.||+|+
T Consensus 4 ~m~lRvrs~~G--~~Ri~v~~~~t~~~L~~~I~~~~-----~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~ 76 (80)
T 2pjh_A 4 SIIIRVQSPDG--VKRITATKRETAATFLKKVAKEF-----GFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLF 76 (80)
T ss_dssp CCCCEEECSSE--EEECCCCSSCCHHHHHHHHHHHT-----CCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEE
T ss_pred cEEEEEECCCC--CEEEEcCCcChHHHHHHHHHHHc-----CCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEE
Confidence 37788888887 77788999999999999999974 888777665543332 3477899999999999999
Q ss_pred Eec
Q 044874 260 IFN 262 (269)
Q Consensus 260 l~~ 262 (269)
|.+
T Consensus 77 l~~ 79 (80)
T 2pjh_A 77 LFP 79 (80)
T ss_dssp C--
T ss_pred Eec
Confidence 864
No 201
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.22 E-value=5.5e-06 Score=59.34 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=47.1
Q ss_pred cCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEc--CCCCccccCCCC
Q 044874 7 PQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVL--QDDRDVEHCEIL 62 (269)
Q Consensus 7 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L--~d~~tL~~~~i~ 62 (269)
...+..+.+.+.+++|+..||++|++++|||+++|+|+|.|+.| +.+.....|--.
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~T 77 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKT 77 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCC
Confidence 34577899999999999999999999999999999999999875 555556666443
No 202
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.19 E-value=5.4e-06 Score=68.69 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=70.4
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
.|+|+. +++...+.+..++++..|+++.+++.|++++++|++|.|+.+.++.+..+..+.++++|.+.....+|.
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 567776 778889999999999999999999999999999999999999999999999999999999999998876
No 203
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.09 E-value=2.2e-05 Score=55.99 Aligned_cols=72 Identities=10% Similarity=0.164 Sum_probs=66.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
+.|.|+. +|....+.+..++....|.+..+++.|++++..|+.|.|..+.++.|-.+.+++++++|.+++..
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 3577874 78899999999999999999999999999999999999999999999999999999999988754
No 204
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.09 E-value=4.4e-07 Score=80.44 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=1.7
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQV 79 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~~ 79 (269)
+|+|+. +|+...+.|..++++..|+++.+++.|++++.+|+.|+|+.|.++.|.+++++++|++|.+.....||+.+
T Consensus 23 ~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~~ 99 (360)
T 3ix6_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMRT 99 (360)
T ss_dssp ---------------------------------------------------------------------------CHH
T ss_pred EEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHHH
Confidence 567776 67888999999999999999999999999999999999999999999999999999999999999999753
No 205
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.98 E-value=3.6e-05 Score=63.68 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=68.9
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..++|.|.. .+ ..+.+++..++....|++..+++. |++.++++|+|.|+.+.++.|-.+..++++|+|.++.
T Consensus 19 ~~~i~ikv~~-~~-~~v~~~i~~~~~l~kl~~~y~~~~-----g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~ 91 (209)
T 3uf8_A 19 ETHINLKVSD-GS-SEIFFKIKKTTPLRRLMEAFAKRQ-----GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (209)
T ss_dssp CSEEEEEEEC-SS-CEEEEEEETTSCTHHHHHHHHHHH-----TCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CCcEEEEEEc-CC-CEEEEEEeeCCHHHHHHHHHHHhh-----CCChheEEEEECCEeccCCCChHHhhhcccccchhhc
Confidence 3568888876 55 788899999999999999999997 9999999999999999999999999999999999986
Q ss_pred Cccc
Q 044874 263 GSVT 266 (269)
Q Consensus 263 ~~~~ 266 (269)
....
T Consensus 92 eq~G 95 (209)
T 3uf8_A 92 EQIG 95 (209)
T ss_dssp SCTT
T ss_pred cccc
Confidence 4443
No 206
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.92 E-value=4.1e-05 Score=54.06 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=69.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
|.|+|-..+++..++.|.|+.++.++-+...+++|+++++-.|.|+++.|+-+..+.-.|+.+++.+.|+....
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999986554
No 207
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.92 E-value=0.00011 Score=52.29 Aligned_cols=73 Identities=11% Similarity=0.213 Sum_probs=66.6
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
++.++|.|+. .| ..+.+.+..++....|.+..+++. |++++..+|.|.|..+.++.|-++.++++||+|.++.
T Consensus 19 ~~~IniKV~~-~g-~ev~FkIK~tt~l~KL~~aYc~r~-----gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 19 PRLFPLKIRC-RA-DLVRLPLRMSEPLQSVVDHMATHL-----GVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCCEEEEEEC-SS-SEEEEEECSSSCTHHHHHHHHHHH-----TSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCeEEEEEEc-CC-cEEEEEEecCChHHHHHHHHHhhc-----CCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 4558888884 55 788899999999999999999987 9999999999999999999999999999999999884
No 208
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.91 E-value=7.6e-05 Score=53.37 Aligned_cols=70 Identities=9% Similarity=0.108 Sum_probs=50.7
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeee--cCCCcccccc-CCCCCEEEEe
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVM--DDDRSFRWHH-VGQGDTIEIF 261 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L--~d~~tL~~~~-i~~~~~i~l~ 261 (269)
-|.|=....+..+.+.+++.+||..+|+.|++++ |+|+++|+|+|.|+.| +.++.-..|- -.+.+=|.||
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqT-----gIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQT-----KIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHH-----CCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHh-----CCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 3444344444889999999999999999999987 9999999999999765 4444444443 2233334444
No 209
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.83 E-value=0.00012 Score=51.73 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=67.6
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|.+.|...++ +...++|.++.++.++-++-+++. |+.++++.|.|+++.|+-...++-.|+.+|..++|+...-
T Consensus 10 m~v~Vl~~n~-rr~~VKvtp~t~L~~VL~eaC~K~-----gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNG-RRHTVKVTPSTVLLQVLEDTCRRQ-----DFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTS-CEEEECCCTTSBHHHHHHHHHHHT-----TCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCC-cEEEEEECCCCCHHHHHHHHHHHh-----CCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 7899988888 999999999999999988888875 9999999999999999999999999999999999996543
No 210
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.79 E-value=3.5e-05 Score=58.32 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=59.0
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCC-------------------------------------cEEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVP-------------------------------------KQTLVF 45 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-------------------------------------~q~L~~ 45 (269)
+.|+.++|...++.|+.+.+|.+++..|+.+.||+.. .|+|-.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~ 93 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT 93 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence 7899999999999999999999999999999999855 333322
Q ss_pred --cCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 46 --NGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 46 --~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.+..|+++.+|.++||.+++++.|.-+
T Consensus 94 dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 94 DDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp SSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred cCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 125678899999999999999887654
No 211
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.79 E-value=3.1e-06 Score=75.05 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
+..++|.|+. .| ..+.++|..+++...|++..+++. |++.++++|.|.|+.+.++.|.+++++++||+|.++.
T Consensus 19 ~~~I~LKV~~-~g-~~v~FkIk~~t~l~kLm~aY~~r~-----G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 19 ETHINLKVSD-GS-SEIFFKIKKTTPLRRLMEAFAKRQ-----GKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CC-cEEEEEEecCChHHHHHHHHHHHh-----CCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 3568888876 55 788899999999999999999987 9999999999999999999999999999999999986
Q ss_pred Ccc
Q 044874 263 GSV 265 (269)
Q Consensus 263 ~~~ 265 (269)
.-+
T Consensus 92 ~Q~ 94 (360)
T 3ix6_A 92 EQI 94 (360)
T ss_dssp ---
T ss_pred ccC
Confidence 433
No 212
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.71 E-value=0.00011 Score=55.57 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=57.7
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC-ceEEEe-----------------------------
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD-GYFFIY----------------------------- 236 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~-~q~l~~----------------------------- 236 (269)
.+.|+.++| ...++.|+++.+|.+++..|+.+- |++.. .+-|+.
T Consensus 13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~ki-----gI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 86 (128)
T 2kc2_A 13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARI-----GITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEK 86 (128)
T ss_dssp EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHHH-----TCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCS
T ss_pred cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHHh-----CCCCcccccccccccccccccCchhhccccccccchhHHHH
Confidence 688999998 999999999999999999999985 77744 233332
Q ss_pred ---------cCeeecCCCccccccCCCCCEEEEecC
Q 044874 237 ---------KQNVMDDDRSFRWHHVGQGDTIEIFNG 263 (269)
Q Consensus 237 ---------~g~~L~d~~tL~~~~i~~~~~i~l~~~ 263 (269)
.+.-|++++||.++||.++++|.|-+.
T Consensus 87 ~k~kL~~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 87 LKQKLHTDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp SCCSCCCSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred HHHHhcccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 136788899999999999999877543
No 213
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.68 E-value=5.6e-06 Score=74.99 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKPQ 78 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~~ 78 (269)
.|+|+. ++....+.+..++++..|++..+++.|+++.+++++|+|+.|.++.|.++++++++++|.+.....||..
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 456665 6778889999999999999999999999999999999999999999999999999999999999998764
No 214
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.64 E-value=0.00021 Score=49.72 Aligned_cols=70 Identities=11% Similarity=0.136 Sum_probs=57.3
Q ss_pred ceeEEEEe--cCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC-----CceEEEecCeeecCCCccccccCCCCCE
Q 044874 185 KLKLLVLT--QCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ-----DGYFFIYKQNVMDDDRSFRWHHVGQGDT 257 (269)
Q Consensus 185 ~~~i~V~~--~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~-----~~q~l~~~g~~L~d~~tL~~~~i~~~~~ 257 (269)
.++|++.. ..+ +.+-+.++...||..|.+.+.+.. +++. .+.+..-++..|.++++|++|+|.+||.
T Consensus 4 yI~ITidl~~y~~-~~~DLRIP~~~tvK~Li~~l~ea~-----~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~ 77 (81)
T 2bps_A 4 YIDITIDLKHYNG-SVFDLRLSDYHPVKKVIDIAWQAQ-----SVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDR 77 (81)
T ss_dssp EEEEEEECTTTTC-CEEEEEEETTSBTTHHHHHHHHHS-----CCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCE
T ss_pred EEEEEEEeeccCC-ceEEEECCCchhHHHHHHHHHHHh-----CCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCE
Confidence 45666653 455 899999999999999999998864 4332 2467778899999999999999999999
Q ss_pred EEE
Q 044874 258 IEI 260 (269)
Q Consensus 258 i~l 260 (269)
|.+
T Consensus 78 Lei 80 (81)
T 2bps_A 78 LEI 80 (81)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 215
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.54 E-value=0.00022 Score=49.57 Aligned_cols=68 Identities=15% Similarity=0.334 Sum_probs=57.8
Q ss_pred EEEEEc--CCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC-----CcEEEEEcCEEcCCCCccccCCCCCCCEEEE
Q 044874 2 DVIFEP--QRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV-----PKQTLVFNGQVLQDDRDVEHCEILQNSRIQL 69 (269)
Q Consensus 2 ~i~vk~--~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-----~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l 69 (269)
.|++.. -.++.+.+.++...|+.+|++.+.+.++++. .+.|+.-.+..|.++..|++|+|.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 566764 4789999999999999999999999998665 2346666788999999999999999998875
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.49 E-value=1.5e-05 Score=72.16 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
...+.|.|+. .+ ..+.++|..+++...|++..+++. |++..+++|.|.|+.+.++.|-++.++++||+|.++.
T Consensus 28 ~~~i~lkv~~-~~-~~~~~~i~~~~~~~~l~~~y~~~~-----g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~ 100 (389)
T 4da1_A 28 ETHINLKVSD-GS-SEIFFKIKKTTPLRRLMEAFAKRQ-----GKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHR 100 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CC-cEEEEEECCCChHHHHHHHHHHHh-----CCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeee
Confidence 3567888876 55 788899999999999999999987 9999999999999999999999999999999999986
Q ss_pred Cccc
Q 044874 263 GSVT 266 (269)
Q Consensus 263 ~~~~ 266 (269)
.-..
T Consensus 101 ~q~g 104 (389)
T 4da1_A 101 EQIG 104 (389)
T ss_dssp ----
T ss_pred cccc
Confidence 4443
No 217
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.39 E-value=0.0084 Score=53.54 Aligned_cols=144 Identities=13% Similarity=0.080 Sum_probs=104.9
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhC----CCCCcEEEEE------cCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQG----IPVPKQTLVF------NGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g----i~~~~q~L~~------~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
+.|... +.+-++.++++.||.+.-..|.++.. .++++--|+. .|.-|++.++|+.|++++++.+...-+
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc
Confidence 444444 77889999999999999999988864 3566777877 366799999999999999998887653
Q ss_pred cCCCCCCcccCCCCCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCC-cceEEEeCC--------
Q 044874 73 SDNKPQVKTEQSSPSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPV-NRLLVQSSG-------- 143 (269)
Q Consensus 73 ~~~g~~~~~~~~~~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~-~~q~L~~~g-------- 143 (269)
. +.+.|....... .........|+.++-+.|+++.|+.. +..-|.+..
T Consensus 85 ~----------------~~~~V~l~dg~~-------~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~ 141 (371)
T 3ivf_A 85 Q----------------RPLKIRMLDGTV-------KTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDE 141 (371)
T ss_dssp E----------------EEEEEECTTSCE-------EEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC--------
T ss_pred e----------------eEEEEECcCCCE-------EEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchH
Confidence 3 356666555543 44555678999999999999999874 456676532
Q ss_pred -eeeccCCcccccCCCCCCEEEEEEccC
Q 044874 144 -AELQDHRSLRDCELMDNAEIDVHVRPS 170 (269)
Q Consensus 144 -~~L~d~~~L~~y~i~~~~~i~l~~~~~ 170 (269)
.-|+..+++.+.+.....++++.++.-
T Consensus 142 ~~wL~~~k~l~~q~~~~~~~l~frvKf~ 169 (371)
T 3ivf_A 142 LNWLDHGRTLREQGVEEHETLLLRRKFF 169 (371)
T ss_dssp --CCCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred HHHHhcCchhHhhCCCCCceEEEEEEEe
Confidence 224456777777666666777766644
No 218
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.32 E-value=0.012 Score=52.56 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=100.6
Q ss_pred ceeecCCcchHHHHHHhhhhhcC----CCCcceEEEe------CCeeeccCCcccccCCCCCCEEEEEEccCCCCCCCCC
Q 044874 109 LPLDMDVNDTVLRLKEKIHEMES----IPVNRLLVQS------SGAELQDHRSLRDCELMDNAEIDVHVRPSPTATSTTS 178 (269)
Q Consensus 109 ~~~~v~~~~TV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~~L~~y~i~~~~~i~l~~~~~~~~~~~~~ 178 (269)
.........||.++...|.++.. .++++.-|.. .|+=|++.++|..|++++++.++..-+.
T Consensus 15 ~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~--------- 85 (371)
T 3ivf_A 15 KTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ--------- 85 (371)
T ss_dssp EEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---------
T ss_pred EEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---------
Confidence 45556678999999999988773 4678888876 2344888999999999999998886443
Q ss_pred CCCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEecC---------eeecCCCccc
Q 044874 179 SGMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIYKQ---------NVMDDDRSFR 248 (269)
Q Consensus 179 ~~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~~g---------~~L~d~~tL~ 248 (269)
+.+.|..++| ....++++++.|+.++=++|+++- |+.... .-|.+.. .-|+.++++.
T Consensus 86 -------~~~~V~l~dg-~~~~~~vd~~tt~~el~~~v~~~l-----~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~ 152 (371)
T 3ivf_A 86 -------RPLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARI-----GITNHDEYSLVRELMEEKKDDELNWLDHGRTLR 152 (371)
T ss_dssp -------EEEEEECTTS-CEEEEEEETTSBHHHHHHHHHHHT-----TCSCGGGEEEECCC----------CCCTTSBTG
T ss_pred -------eEEEEECcCC-CEEEEEECCCCCHHHHHHHHHHHc-----CCCCccccEEEEEecccccchHHHHHhcCchhH
Confidence 6888988998 889999999999999999999974 666433 4455432 3456677888
Q ss_pred cccCCCCCEEEEe
Q 044874 249 WHHVGQGDTIEIF 261 (269)
Q Consensus 249 ~~~i~~~~~i~l~ 261 (269)
+.++.+..++++.
T Consensus 153 ~q~~~~~~~l~fr 165 (371)
T 3ivf_A 153 EQGVEEHETLLLR 165 (371)
T ss_dssp GGTCCTTCEEEEE
T ss_pred hhCCCCCceEEEE
Confidence 8887777776653
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.29 E-value=0.0015 Score=45.73 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=58.9
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeee---cCCCccccccCCCCCEE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVM---DDDRSFRWHHVGQGDTI 258 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L---~d~~tL~~~~i~~~~~i 258 (269)
....|.++.++| ..+.-....++||.+|+.-|... +.+...+.|+ |-.+.+ +.+.||.+.|+.+.++|
T Consensus 6 ~~~~i~iRlpdG-~r~~~~F~~~~tl~~v~~fv~~~------~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L 78 (84)
T 3qx1_A 6 PVSKLRIRTPSG-EFLERRFLASNKLQIVFDFVASK------GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETL 78 (84)
T ss_dssp CEEEEEEECTTS-CEEEEEEETTSBHHHHHHHHHHT------TCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEE
T ss_pred CeEEEEEECCCC-CEEEEEeCCCCCHHHHHHHHHHc------CCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEE
Confidence 346788888898 77778889999999999999883 5666778888 678888 45689999999999998
Q ss_pred EEe
Q 044874 259 EIF 261 (269)
Q Consensus 259 ~l~ 261 (269)
+|=
T Consensus 79 ~ve 81 (84)
T 3qx1_A 79 FLE 81 (84)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 220
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.19 E-value=0.0024 Score=44.58 Aligned_cols=69 Identities=7% Similarity=0.131 Sum_probs=58.9
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEc---CCCCccccCCCCCCCEEEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVL---QDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L---~d~~tL~~~~i~~~~~i~l~~ 71 (269)
+|-||..+|+.+.-.++.++||.+|..-|.. .+.++..+.|+. ..+.| +.+.+|.+.|+.+.+++.+-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 5788999999988899999999999999998 677778888884 47777 457899999999999888753
No 221
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=97.01 E-value=0.0063 Score=57.09 Aligned_cols=216 Identities=11% Similarity=0.059 Sum_probs=137.5
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc-----C--EE-cC-----CCCccccCCC-CCCCEEEEEEecCC--C
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN-----G--QV-LQ-----DDRDVEHCEI-LQNSRIQLLVASDN--K 76 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~-----G--~~-L~-----d~~tL~~~~i-~~~~~i~l~~~~~~--g 76 (269)
..+.|...+|+.+||++|++..|+|+++|||... + +. +. .+.++.++.- .+.-.++|-+...+ +
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~ 117 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAA 117 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHT
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCC
Confidence 3678899999999999999999999999999753 1 11 11 1223444322 22334444333211 1
Q ss_pred CCCcccCCCCCceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEEeC------Ceeec-cC
Q 044874 77 PQVKTEQSSPSKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQSS------GAELQ-DH 149 (269)
Q Consensus 77 ~~~~~~~~~~~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~~------g~~L~-d~ 149 (269)
......+......+-||+|....... ..............+|.+|-..|.+..|+|++.-...|. ...|. ..
T Consensus 118 ~~~~l~~~~~~~~iLlFlK~yDp~~q-~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 118 SGATLPKFDKDHDVMLFLKMYDPKTR-SLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTCCCCCCCTTTEEEEEEEEEETTTT-EEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred ccccCCCCCCCCcEEEEEEeeCCCCC-EEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 00000112234568999998866541 112223344556789999999999999999987666663 23466 58
Q ss_pred Cccccc--CCCCCCEEEEEEccCCCCCCCCCCCC------CCcceeEEEEecC--CCeEEEEEecCCCcHHHHHHHHHHh
Q 044874 150 RSLRDC--ELMDNAEIDVHVRPSPTATSTTSSGM------GPRKLKLLVLTQC--GNKRIPVEVNASDNVSELRKELQKL 219 (269)
Q Consensus 150 ~~L~~y--~i~~~~~i~l~~~~~~~~~~~~~~~~------~~~~~~i~V~~~~--g~~~~~l~v~~~~tV~~lK~~i~~~ 219 (269)
.|+.+. .+.+|++|-.-..........- +.. -..++.|.+.+.+ ....|.++++...|-.++-+.+.++
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y-~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~ 275 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSEL-PTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 275 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSS-CSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccC-CCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHH
Confidence 899999 9999999877655431100000 000 0013455555532 1267999999999999999999997
Q ss_pred hhccCCCCCCCceEEE
Q 044874 220 HQRYHFHLPQDGYFFI 235 (269)
Q Consensus 220 ~~~~~~~~p~~~q~l~ 235 (269)
- ++.++..+|.
T Consensus 276 l-----~~dP~~lRf~ 286 (530)
T 2ylm_A 276 L-----NTDPMLLQFF 286 (530)
T ss_dssp H-----TSCGGGEEEE
T ss_pred h-----CCCchhEEEE
Confidence 4 8888877764
No 222
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.97 E-value=0.0077 Score=44.24 Aligned_cols=74 Identities=5% Similarity=0.058 Sum_probs=61.1
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeec---CCCccccccCCCCCE
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMD---DDRSFRWHHVGQGDT 257 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~ 257 (269)
.....|.|+.++| ..+.-....++||.+|++-|.... +.+...+.|+ |-.+++. .++||.+.|+.+..+
T Consensus 11 ~~~t~IqIRlpdG-~rl~~rF~~~~tl~~v~~fV~~~~-----~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~ 84 (109)
T 2dzk_A 11 STIARIQFRLPDG-SSFTNQFPSDAPLEEARQFAAQTV-----GNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSAS 84 (109)
T ss_dssp SCCEEEEEECSSS-CEEEEEECTTSBHHHHHHHHHHHH-----TTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEE
T ss_pred CCcEEEEEECCCC-CEEEEEeCCCCCHHHHHHHHHhcc-----CCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceE
Confidence 3457899999999 888889999999999999998864 5555567776 7788886 367999999999988
Q ss_pred EEEec
Q 044874 258 IEIFN 262 (269)
Q Consensus 258 i~l~~ 262 (269)
|++..
T Consensus 85 L~v~~ 89 (109)
T 2dzk_A 85 VVLLP 89 (109)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88864
No 223
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.69 E-value=0.02 Score=38.41 Aligned_cols=67 Identities=24% Similarity=0.429 Sum_probs=51.3
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCc
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGS 264 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~ 264 (269)
.|+|.|+-..+ ...+++....||.+|.+++ +++.....+..+|.....+. -+++||.|.+++ .
T Consensus 4 ~m~i~vNg~~~--~~~~~~~~~~tv~~Ll~~l---------~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~-~ 66 (70)
T 1ryj_A 4 GMKFTVITDDG--KKILESGAPRRIKDVLGEL---------EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR-V 66 (70)
T ss_dssp CEEEEEEETTE--EEEEEESSCCBHHHHHHHT---------TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE-C
T ss_pred eEEEEEeCccC--ceeEECCCCCcHHHHHHHh---------CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe-c
Confidence 38888886543 5566788889999998765 56666677889999987664 789999999986 4
Q ss_pred ccCC
Q 044874 265 VTGG 268 (269)
Q Consensus 265 ~~~~ 268 (269)
|+||
T Consensus 67 V~GG 70 (70)
T 1ryj_A 67 IYGG 70 (70)
T ss_dssp TTCC
T ss_pred cccC
Confidence 5555
No 224
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.59 E-value=0.019 Score=42.03 Aligned_cols=63 Identities=21% Similarity=0.391 Sum_probs=45.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC------CceEEEec----CeeecC--------C-----CccccccCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ------DGYFFIYK----QNVMDD--------D-----RSFRWHHVG 253 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~------~~q~l~~~----g~~L~d--------~-----~tL~~~~i~ 253 (269)
..+.++|-.+|||..+|++|-+.-.+ |.|. +.+.|.++ |++|.| + +||.+|+|.
T Consensus 24 ~~i~vkVLdCDTItQvKeKiLd~vyk---~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 100 (111)
T 4e71_A 24 DAIPVKVLNCDTISQVKEKIIDQVYR---GQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVR 100 (111)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTC------------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCC
T ss_pred CceeeeeeccCcHHHHHHHHHHHHHc---CCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCC
Confidence 56888899999999999998875433 5553 34667653 456655 1 489999999
Q ss_pred CCCEEEEec
Q 044874 254 QGDTIEIFN 262 (269)
Q Consensus 254 ~~~~i~l~~ 262 (269)
+|++|.+++
T Consensus 101 dgatl~l~~ 109 (111)
T 4e71_A 101 DGATLILSK 109 (111)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999875
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.47 E-value=0.015 Score=42.66 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=60.9
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcC---CCCccccCCCCCCCEEEEEEecC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQ---DDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~---d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
+|-||..+|..+.-.++.++||.++.+-|....+.+.....|+. ..+.+. .+.+|.+.|+.+.+++++.....
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~~ 92 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAGR 92 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCSS
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECcC
Confidence 57889999999999999999999999999999887767777774 577775 36899999999988887765443
No 226
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.42 E-value=0.034 Score=41.76 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=61.4
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeee--c-CCCccccccCCCCCEE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVM--D-DDRSFRWHHVGQGDTI 258 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L--~-d~~tL~~~~i~~~~~i 258 (269)
....|.|+.++| ..+.-....++||.+|+.-|... +.+...+.|+ |-.+.| + .+.||.+.|+.+..+|
T Consensus 42 ~~t~IqIRlPdG-~rl~~rF~~~~tl~~V~~fV~~~------~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~L 114 (124)
T 1wj4_A 42 PKAQLMLRYPDG-KREQITLPEQAKLLALVKHVQSK------GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETV 114 (124)
T ss_dssp CEEEEEEECTTS-CEEEEEEETTSCHHHHHHHHHHH------HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCC
T ss_pred CcEEEEEECCCC-CEEEEEeCCCCCHHHHHHHHHhc------CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEE
Confidence 457888998998 78888999999999999999874 4565667777 779999 3 3689999999998888
Q ss_pred EEecCccc
Q 044874 259 EIFNGSVT 266 (269)
Q Consensus 259 ~l~~~~~~ 266 (269)
+|-+.--+
T Consensus 115 iv~~~d~~ 122 (124)
T 1wj4_A 115 FVQESGPS 122 (124)
T ss_dssp EEEECCST
T ss_pred EEEEccCC
Confidence 88754333
No 227
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.35 E-value=0.024 Score=43.01 Aligned_cols=65 Identities=15% Similarity=0.292 Sum_probs=48.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC------ceEEEe----cCe-eecCC-------------CccccccC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD------GYFFIY----KQN-VMDDD-------------RSFRWHHV 252 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~------~q~l~~----~g~-~L~d~-------------~tL~~~~i 252 (269)
..+.++|-.+|||..+|++|-+.-. .|+|.+ ..-|.+ .|+ +|.|. .||..|+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavY---k~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V 117 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLY---KGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKV 117 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHT---TTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTC
T ss_pred CceeEEEeccccHHHHHHHHHHHHH---cCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCC
Confidence 5788999999999999999988543 366643 355655 243 46663 49999999
Q ss_pred CCCCEEEEecCc
Q 044874 253 GQGDTIEIFNGS 264 (269)
Q Consensus 253 ~~~~~i~l~~~~ 264 (269)
.+|.+|.+++..
T Consensus 118 ~Dga~l~l~~~~ 129 (138)
T 2r2o_A 118 PDGATVALVPCL 129 (138)
T ss_dssp CTTCEEEEEEC-
T ss_pred CCCCEEEEEECC
Confidence 999999998643
No 228
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.35 E-value=0.013 Score=39.78 Aligned_cols=66 Identities=15% Similarity=0.312 Sum_probs=49.9
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSV 265 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~ 265 (269)
|++.|+.. |...-.++++...||++|=+++ ++|++......+|+....+. +.+||.|.++. .+
T Consensus 1 M~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~L---------gl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~-~V 63 (74)
T 2l32_A 1 MNVTVEVV-GEETSEVAVDDDGTYADLVRAV---------DLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR-LI 63 (74)
T ss_dssp CEEEEECS-SSSEEEEECSTTCSHHHHHHTT---------CCCSSCCCEECCCCCCCTTS------SSCCCCEEECS-SC
T ss_pred CEEEEEEe-CccceeEEcCCCCcHHHHHHHc---------CCCcceEEEEECCEECCHHH------CCCCCEEEEEE-ee
Confidence 56777766 4355568999999999987544 99999888889999887776 34599999984 34
Q ss_pred cCC
Q 044874 266 TGG 268 (269)
Q Consensus 266 ~~~ 268 (269)
+||
T Consensus 64 ~G~ 66 (74)
T 2l32_A 64 KGG 66 (74)
T ss_dssp SCC
T ss_pred ccc
Confidence 443
No 229
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.28 E-value=0.015 Score=43.74 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=59.1
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEc--C-CCCccccCCCCCCCEEEEEEe
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVL--Q-DDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L--~-d~~tL~~~~i~~~~~i~l~~~ 72 (269)
+|-||..+|..+.-.+..++||.+|..-|... +.++....|+. ..+.| . .+.+|.+.|+.+.+++++...
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 57889999999999999999999999999887 77777888874 57888 3 479999999999888877643
No 230
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=96.24 E-value=0.018 Score=40.41 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=47.2
Q ss_pred CCCCCcceeEEEEecCCCeEEEEEecCC-CcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCE
Q 044874 179 SGMGPRKLKLLVLTQCGNKRIPVEVNAS-DNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDT 257 (269)
Q Consensus 179 ~~~~~~~~~i~V~~~~g~~~~~l~v~~~-~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~ 257 (269)
.|.....|+|.| +| +.+ ++... .||.+|.+.+ +++.....+..+|..+..+ ...+.-+++||.
T Consensus 14 ~~~~~~~M~I~v---NG-e~~--el~~~~~Tv~dLL~~L---------~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~ 77 (87)
T 1tyg_B 14 SGHIGGRHMLQL---NG-KDV--KWKKDTGTIQDLLASY---------QLENKIVIVERNKEIIGKE-RYHEVELCDRDV 77 (87)
T ss_dssp --------CEEE---TT-EEE--CCSSSCCBHHHHHHHT---------TCTTSCCEEEETTEEECGG-GTTTSBCCSSSE
T ss_pred CCCCCcceEEEE---CC-EEE--ECCCCCCcHHHHHHHh---------CCCCCCEEEEECCEECChh-hcCCcCCCCCCE
Confidence 344556687777 45 544 56666 8999998765 5666667777899988644 455678999999
Q ss_pred EEEecCcccCC
Q 044874 258 IEIFNGSVTGG 268 (269)
Q Consensus 258 i~l~~~~~~~~ 268 (269)
|.++. .|+||
T Consensus 78 Vei~~-~V~GG 87 (87)
T 1tyg_B 78 IEIVH-FVGGG 87 (87)
T ss_dssp EEEEE-ECCC-
T ss_pred EEEEc-ccccC
Confidence 99996 56655
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.22 E-value=0.028 Score=41.13 Aligned_cols=72 Identities=10% Similarity=0.076 Sum_probs=59.1
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeec--CCCccccccCCCCCEE
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMD--DDRSFRWHHVGQGDTI 258 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~--d~~tL~~~~i~~~~~i 258 (269)
....+|.|+.++| ..+.-....++||.+|..-|... +.....+.|+ |-.+.|. .+.||.+.|+.+..+|
T Consensus 21 ~~~~~IqiRlpdG-~r~~rrF~~~~tl~~v~~fv~~~------~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L 93 (109)
T 2cr5_A 21 EEVVTVALRCPNG-RVLRRRFFKSWNSQVLLDWMMKV------GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVL 93 (109)
T ss_dssp SSEEEEEEECTTS-CEEEEEEESSSBTHHHHHHHHHH------TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEE
T ss_pred CCcEEEEEECCCC-CEEEEEeCCCCCHHHHHHHHHhc------CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEE
Confidence 3468889999999 77878889999999999999875 4555567776 7788886 4689999999999998
Q ss_pred EEe
Q 044874 259 EIF 261 (269)
Q Consensus 259 ~l~ 261 (269)
+|-
T Consensus 94 ~Ve 96 (109)
T 2cr5_A 94 NVE 96 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 232
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.88 E-value=0.053 Score=37.44 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=58.4
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE---ecCeeecCCCccccccCCCCCEEEE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI---YKQNVMDDDRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l 260 (269)
+...+.|+-... ...-+.|++.-+..+|-..|+++. .+.++...|. -.+.+|+=+++|.+|||++ +|.
T Consensus 9 ~TvRLvVNy~~t-QKtVvRVSP~vpL~ellp~IC~Kc-----efdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya 79 (91)
T 2daj_A 9 KTVRVVINFKKT-QKTIVRVSPHASLQELAPIICSKC-----EFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYA 79 (91)
T ss_dssp SCEEEEEEETTT-EEEEEEECSSSCTTTHHHHHHHHT-----TCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEE
T ss_pred cEEEEEEeecCc-ceeEEEeCCCCcHHHHHHHHhhcc-----cCChhhEEEecCCCCCcccchhcchhhhhhhh---hhe
Confidence 457888887765 777789999999999999999987 7888877776 3467889899999999997 777
Q ss_pred ec
Q 044874 261 FN 262 (269)
Q Consensus 261 ~~ 262 (269)
+.
T Consensus 80 ~d 81 (91)
T 2daj_A 80 MD 81 (91)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 233
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.59 E-value=0.071 Score=39.38 Aligned_cols=65 Identities=12% Similarity=0.381 Sum_probs=48.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC------ceEEEe-cCe----eecC---------C----CccccccC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD------GYFFIY-KQN----VMDD---------D----RSFRWHHV 252 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~------~q~l~~-~g~----~L~d---------~----~tL~~~~i 252 (269)
..+.++|-.+|||..+|++|-+.-.+ +.|.+ .+.|.+ .|. +|.| + +||.+|+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk---~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V 103 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFK---NVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQV 103 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTT---TSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTC
T ss_pred CceEeeeecCCchHHHHHHHHHHHhc---CCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCC
Confidence 45888899999999999998875433 55533 466665 332 3554 1 48999999
Q ss_pred CCCCEEEEecCc
Q 044874 253 GQGDTIEIFNGS 264 (269)
Q Consensus 253 ~~~~~i~l~~~~ 264 (269)
.+|.++.+++.-
T Consensus 104 ~dgatl~l~~~~ 115 (117)
T 4e74_A 104 PDGSVVALVSKQ 115 (117)
T ss_dssp CTTCEEEEEECC
T ss_pred CCCCEEEEEeCC
Confidence 999999998754
No 234
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.32 E-value=0.15 Score=38.07 Aligned_cols=64 Identities=8% Similarity=0.259 Sum_probs=48.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC------CceEEEec-C---e-eecC---------C----CccccccC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ------DGYFFIYK-Q---N-VMDD---------D----RSFRWHHV 252 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~------~~q~l~~~-g---~-~L~d---------~----~tL~~~~i 252 (269)
..+.++|-.+|||..+|++|-+.-.+ +.|. +.+.|.++ | + +|.| + +||.+|+|
T Consensus 17 ~~i~VkVLdCDTItQvKeKiLd~vyk---~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V 93 (127)
T 3h6n_A 17 DSLSVRAMDTDTLTQVKEKILEAFCK---NVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI 93 (127)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHST---TSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred CceeeeeeccCchhhhhHHHHHHHhc---cCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence 56888999999999999998875432 5553 45677762 3 3 3655 1 59999999
Q ss_pred CCCCEEEEecC
Q 044874 253 GQGDTIEIFNG 263 (269)
Q Consensus 253 ~~~~~i~l~~~ 263 (269)
.+|.+|.+++.
T Consensus 94 ~dgatv~l~~~ 104 (127)
T 3h6n_A 94 PEGASLAMSLI 104 (127)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEEc
Confidence 99999999853
No 235
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=95.32 E-value=0.046 Score=36.96 Aligned_cols=61 Identities=28% Similarity=0.373 Sum_probs=45.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGGS 269 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 269 (269)
+| +.. ++ ...||.+|-+++ ++++....+..+|.++.-+ ...++-+++||.|.|+. .+.||+
T Consensus 6 NG-~~~--e~-~~~Tl~~LL~~l---------~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~-~VgGG~ 66 (73)
T 2kl0_A 6 NG-EQR--EV-QSASVAALMTEL---------DCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT-PRQGGL 66 (73)
T ss_dssp TT-EEE--CC-CCSBHHHHHHHT---------TCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC-CCCCCC
T ss_pred CC-EEE--Ec-CCCcHHHHHHHc---------CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc-cccCCc
Confidence 45 544 45 568999886543 7888888888999998644 56678899999999985 566664
No 236
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.30 E-value=0.12 Score=37.67 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=44.7
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHh--CCCC------CcEEEEEc----CEEcCCC-------------CccccCCCCCC
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQ--GIPV------PKQTLVFN----GQVLQDD-------------RDVEHCEILQN 64 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~~----G~~L~d~-------------~tL~~~~i~~~ 64 (269)
+..+.+.|-.-|||.++|++|.+.. |.|. +...|-+. |+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4568888889999999999998873 4443 34456552 5566552 58999999999
Q ss_pred CEEEEEE
Q 044874 65 SRIQLLV 71 (269)
Q Consensus 65 ~~i~l~~ 71 (269)
+++-|.-
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998764
No 237
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.27 E-value=0.069 Score=39.03 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=57.8
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcC--CCCccccCCCCCCCEEEEEEe
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQ--DDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~--d~~tL~~~~i~~~~~i~l~~~ 72 (269)
+|-||..+|+.+.-.+..++||.+|..-|... +..+....|+. -.+.|. .+.+|.+.|+.+.++++|...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 57889999999888999999999999999965 55666777764 477775 479999999999988877654
No 238
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.17 E-value=0.046 Score=37.06 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=51.0
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+|+..+.....++++...|+++|-+. .|+++..--+..||+.+..+. +.+|+.+.++---.||.
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~~ 67 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGGL 67 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC-
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeecccc
Confidence 89999987666677899999999988765 899999887778998876555 23488888765555543
No 239
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=95.04 E-value=0.076 Score=49.74 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred cCCcchHHHHHHhhhhhcCCCCcceEEEe----CCee----e-----ccCCcccccCC-CCCCEEEEEEccCCCCCC--C
Q 044874 113 MDVNDTVLRLKEKIHEMESIPVNRLLVQS----SGAE----L-----QDHRSLRDCEL-MDNAEIDVHVRPSPTATS--T 176 (269)
Q Consensus 113 v~~~~TV~~lK~~I~~~~gip~~~q~L~~----~g~~----L-----~d~~~L~~y~i-~~~~~i~l~~~~~~~~~~--~ 176 (269)
.....|+.+|+++|++..|+|+++|||-. .++- + ....++.++.- .+.-+|.|.+.......+ .
T Consensus 42 v~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~~~~~~ 121 (530)
T 2ylm_A 42 VLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAASGAT 121 (530)
T ss_dssp EETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHHTTTCC
T ss_pred EcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccCCcccc
Confidence 34588999999999999999999999963 1211 1 11223333321 223445554321100000 0
Q ss_pred CCCCCCCcceeEEEEecCC-CeEEE----EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec------Ceeec-CC
Q 044874 177 TSSGMGPRKLKLLVLTQCG-NKRIP----VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK------QNVMD-DD 244 (269)
Q Consensus 177 ~~~~~~~~~~~i~V~~~~g-~~~~~----l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~------g~~L~-d~ 244 (269)
.++-.....+-||+|-.+- .+++. +-|+..++|.+|-..|.++- |+|++.-...|. -..|+ .+
T Consensus 122 l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~-----g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 122 LPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRA-----GFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp CCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHH-----TCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHc-----CCCCCCceEEEEecCCCceeEccccc
Confidence 0111223458888887653 13443 58899999999999999985 999997666665 23456 57
Q ss_pred Cccccc--cCCCCCEEEE
Q 044874 245 RSFRWH--HVGQGDTIEI 260 (269)
Q Consensus 245 ~tL~~~--~i~~~~~i~l 260 (269)
.|+.++ .+.+||+|.+
T Consensus 197 ~t~~~~~~eL~~GdII~f 214 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVF 214 (530)
T ss_dssp SBHHHHSTTCCTTEEEEE
T ss_pred ccHHHHHhcccCCCEEEE
Confidence 799999 9999998654
No 240
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.00 E-value=0.042 Score=37.91 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=53.9
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc---CEEcCCCCccccCCCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN---GQVLQDDRDVEHCEILQ 63 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~---G~~L~d~~tL~~~~i~~ 63 (269)
++.|.....+...+.|+|..++.+|--.|.++..+.|+.--|.-. +..|+-+++|.+|||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456666667788899999999999999999999999998888754 56789999999999986
No 241
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.97 E-value=0.14 Score=42.48 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=55.1
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCC-cEEEEE-c----CEEcCC-CCccccCCCCCCCEEEEEEecCCCC
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQGIPVP-KQTLVF-N----GQVLQD-DRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~-~----G~~L~d-~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
+++.++..+||.+|++++...++++++ ..||.. . ...|.| +.+|.++++.++..|.+-++..+|-
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg~ 225 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDGT 225 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTSC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCCC
Confidence 556779999999999999999999997 588875 2 335665 6899999999999999999988773
No 242
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.96 E-value=0.11 Score=39.13 Aligned_cols=67 Identities=12% Similarity=0.212 Sum_probs=54.6
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHh-CCCCCcEEEEE--cCEEcCC-CCccccCCCCCCCEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQ-GIPVPKQTLVF--NGQVLQD-DRDVEHCEILQNSRIQ 68 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~L~~--~G~~L~d-~~tL~~~~i~~~~~i~ 68 (269)
+|-||..+|..+.-.++.++||.+|.+-|.... +.+.....|+. -.+.|.| +.+|.+.|+.+.+++.
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 578899999999999999999999999999874 35556678875 4788865 6999999999855443
No 243
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=94.87 E-value=0.063 Score=36.77 Aligned_cols=62 Identities=27% Similarity=0.391 Sum_probs=46.1
Q ss_pred CCCeEEEEEec--CCCcHHHHHHHHHHhhhccCCCCC-CCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCCC
Q 044874 194 CGNKRIPVEVN--ASDNVSELRKELQKLHQRYHFHLP-QDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGGS 269 (269)
Q Consensus 194 ~g~~~~~l~v~--~~~tV~~lK~~i~~~~~~~~~~~p-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 269 (269)
+| +.. ++. ...||.+|-+++ +++ +....+..+|.++.-+ ...++-+++||.|.|+. .|.||+
T Consensus 6 NG-e~~--e~~~~~~~Tl~~LL~~l---------~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~-~VgGG~ 70 (78)
T 2k5p_A 6 NG-KPS--TVDGAESLNVTELLSAL---------KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY-FMGGGK 70 (78)
T ss_dssp TT-EEE--ECSSCSCEEHHHHHHHH---------TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC-CCCCSC
T ss_pred CC-EEE--EcCCCCCCcHHHHHHHc---------CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe-eecCCC
Confidence 45 544 455 668999987654 677 7677788999998654 66778899999999985 566664
No 244
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.79 E-value=0.17 Score=33.93 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=39.1
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCC--CceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQ--DGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+++ ...||.+|.+.+..+. ++.. ....+.-||+...+ .++-+++||.|.+++ .++||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~-----~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P-pvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKE-----GLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP-PVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCT-----TTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC-CBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCc-----CHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC-CCCCC
Confidence 556 5689999999998642 2321 33455567776543 356799999999987 56665
No 245
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.74 E-value=0.11 Score=42.79 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCC-cEEEEE---cC--EEcCC-CCccccCCCCCCCEEEEEEecCCC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVP-KQTLVF---NG--QVLQD-DRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~---~G--~~L~d-~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
.+++.++..+||.+|++++...++++++ ..||.. .+ ..|.+ +.+|.++++.++..|.+-++..+|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3667889999999999999999999987 578753 23 34655 579999999999999999998776
No 246
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.73 E-value=0.51 Score=35.07 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=45.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC----CceEEEec-C---eee----------cCC----CccccccCCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ----DGYFFIYK-Q---NVM----------DDD----RSFRWHHVGQ 254 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~----~~q~l~~~-g---~~L----------~d~----~tL~~~~i~~ 254 (269)
..+.++|-.+|||..+|++|-+.-.+ ..++|. +.+.|.++ | .+| +++ .||+.|+|.+
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk-~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~D 117 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLS-KNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISN 117 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHH-HHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhc-cCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCC
Confidence 56888899999999999998774321 025554 34555542 2 233 232 4889999999
Q ss_pred CCEEEEec
Q 044874 255 GDTIEIFN 262 (269)
Q Consensus 255 ~~~i~l~~ 262 (269)
|++|.+++
T Consensus 118 gatlal~k 125 (126)
T 3kuz_A 118 GSTIKVFK 125 (126)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEee
Confidence 99999875
No 247
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.54 E-value=0.11 Score=39.07 Aligned_cols=69 Identities=10% Similarity=0.236 Sum_probs=54.5
Q ss_pred ceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE--ecCeeecC-CCccccccCCCCCEE
Q 044874 185 KLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI--YKQNVMDD-DRSFRWHHVGQGDTI 258 (269)
Q Consensus 185 ~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~--~~g~~L~d-~~tL~~~~i~~~~~i 258 (269)
...|.|+..+| ..+.-..+.++||.+|++-|.... -+.....+.|+ |-.+.++| +.||.+.|+.+..+|
T Consensus 52 ~t~IqIRlpdG-~rl~~rF~~~~tl~~v~~fV~~~~----~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADG-GRLVQKFNHSHRISDIRLFIVDAR----PAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTT-TEEEEECCSSCBHHHHHHHHHHHC----SGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCC-CEEEEEeCCCCCHHHHHHHHHHhC----cCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 46888888998 778889999999999999998852 13444567776 77899976 589999999985544
No 248
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.11 E-value=0.52 Score=35.15 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=48.7
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHh--CCCC------CcEEEEE-c---CEE-cCCC-------------CccccCCCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQ--GIPV------PKQTLVF-N---GQV-LQDD-------------RDVEHCEIL 62 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~-~---G~~-L~d~-------------~tL~~~~i~ 62 (269)
++..+.+.|-.-|||.++|++|.+.. +.|. +...|-+ . |.. |.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45568888889999999999998873 4443 4566666 2 443 6542 689999999
Q ss_pred CCCEEEEEEecC
Q 044874 63 QNSRIQLLVASD 74 (269)
Q Consensus 63 ~~~~i~l~~~~~ 74 (269)
+|+++.|..+..
T Consensus 95 dgatv~l~~~~~ 106 (127)
T 3h6n_A 95 EGASLAMSLIDK 106 (127)
T ss_dssp TTCEEEEEECC-
T ss_pred CCCEEEEEEccc
Confidence 999999886543
No 249
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.07 E-value=0.48 Score=31.38 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=48.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|.... ....+++....|+.+|.+.+ ++++....+..+|..+..+. -+++|+.|.++-...||
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 677776543 23456777889999998875 67777778889999887654 57789999887655443
No 250
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.01 E-value=0.45 Score=33.73 Aligned_cols=77 Identities=19% Similarity=0.320 Sum_probs=48.2
Q ss_pred eeEEEEecC------CCeEEEEEecCCCcHHHHHHHHHHhhhccCCCC------CCCceEEEecCeeecCCCccccccCC
Q 044874 186 LKLLVLTQC------GNKRIPVEVNASDNVSELRKELQKLHQRYHFHL------PQDGYFFIYKQNVMDDDRSFRWHHVG 253 (269)
Q Consensus 186 ~~i~V~~~~------g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~------p~~~q~l~~~g~~L~d~~tL~~~~i~ 253 (269)
|+|.|+-.. |.....+++....||.+|.+.+........--+ ......+.-||+.... ++-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 666665543 334567788788999999999988632110001 0133456677776652 67799
Q ss_pred CCCEEEEecCcccCC
Q 044874 254 QGDTIEIFNGSVTGG 268 (269)
Q Consensus 254 ~~~~i~l~~~~~~~~ 268 (269)
+||.|.+++ .++||
T Consensus 85 dGDeV~i~p-pv~GG 98 (98)
T 1vjk_A 85 DGDVVGVFP-PVSGG 98 (98)
T ss_dssp TTCEEEEES-CC---
T ss_pred CCCEEEEEC-CCCCC
Confidence 999999987 56665
No 251
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.80 E-value=0.21 Score=34.28 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCcchHHHHHHhhhhhcCCCCcceEEEeCCeeeccCCcccccCCCCCCEEEEEEccC
Q 044874 114 DVNDTVLRLKEKIHEMESIPVNRLLVQSSGAELQDHRSLRDCELMDNAEIDVHVRPS 170 (269)
Q Consensus 114 ~~~~TV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~L~~y~i~~~~~i~l~~~~~ 170 (269)
....++..||..++++.|++.+...+...+..|+++++|.+-+++-...+.+.+...
T Consensus 10 DI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 10 DINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp ESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred cccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 346678899999999999999999998888889999999999999999999887654
No 252
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.55 E-value=0.25 Score=32.11 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=42.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 194 CGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 194 ~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+| +.+ ++ ...||.+|.+.+ +++.....+..+|.....+ ...++-+++||.|.+++ .|+||
T Consensus 5 Ng-~~~--~~-~~~tv~~ll~~l---------~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~-~V~GG 64 (64)
T 2cu3_A 5 NG-EPR--PL-EGKTLKEVLEEM---------GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA-LMQGG 64 (64)
T ss_dssp TT-EEE--CC-TTCCHHHHHHHH---------TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE-CCCC-
T ss_pred CC-EEE--Ec-CCCcHHHHHHHc---------CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe-ecccC
Confidence 55 555 45 568999998766 4556666777888887643 45566899999999997 56665
No 253
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.21 E-value=0.2 Score=34.63 Aligned_cols=44 Identities=5% Similarity=0.053 Sum_probs=38.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN 46 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 46 (269)
|.|+|... -++.+.|.++.+..+|.++|.++.+++++...|.|.
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 35566554 689999999999999999999999999999999996
No 254
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=93.18 E-value=0.49 Score=32.75 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=44.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCC-CCC-----CCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHF-HLP-----QDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~-~~p-----~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
....+++....||.+|.+.+..+...... -+. .+...+.-||+.... ++-+++||.|.+++ .|+||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P-pv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP-PVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC-CCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC-CCCCC
Confidence 46678888788999999999886421000 011 112455567777654 56799999999987 66665
No 255
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.05 E-value=0.52 Score=34.71 Aligned_cols=63 Identities=22% Similarity=0.402 Sum_probs=46.0
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHh--CCCCC------cEEEEE-c---CE-EcCCC-------------CccccCCCCCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQ--GIPVP------KQTLVF-N---GQ-VLQDD-------------RDVEHCEILQN 64 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~-~---G~-~L~d~-------------~tL~~~~i~~~ 64 (269)
..+.+.|-.-|||.++|++|.+.. +.|.+ ...|-+ . |+ .|.|. .||++|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347788889999999999998773 45443 455655 2 33 25441 68999999999
Q ss_pred CEEEEEEec
Q 044874 65 SRIQLLVAS 73 (269)
Q Consensus 65 ~~i~l~~~~ 73 (269)
+++-++.+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999987654
No 256
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=92.80 E-value=0.19 Score=32.88 Aligned_cols=56 Identities=29% Similarity=0.484 Sum_probs=41.3
Q ss_pred EecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 202 EVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 202 ~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
++....||.+|.+.+ +++.....+..+|.....+ ...++-+++||.|.+++ .|+||
T Consensus 11 ~~~~~~tv~~ll~~l---------~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~-~V~GG 66 (66)
T 1f0z_A 11 QCAAGQTVHELLEQL---------DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ-VIAGG 66 (66)
T ss_dssp CCCTTCCHHHHHHHH---------TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE-SCCCC
T ss_pred EcCCCCcHHHHHHHc---------CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe-ecccC
Confidence 566778999998876 4566666777888887532 34456799999999996 56665
No 257
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=92.69 E-value=0.23 Score=33.75 Aligned_cols=65 Identities=23% Similarity=0.361 Sum_probs=42.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
....++ ....||.+|.+.+........--++.....+..+|+.... ++-+++||.|.+++ .++||
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P-pv~GG 81 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP-PVTGG 81 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC-CCCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC-CCCCC
Confidence 345555 5677999999999864310000133334566778887642 56799999999987 56665
No 258
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.67 E-value=0.6 Score=35.30 Aligned_cols=64 Identities=20% Similarity=0.403 Sum_probs=46.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHh--CCCCC------cEEEEE----cCEE-cCCC-------------CccccCCCCCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQ--GIPVP------KQTLVF----NGQV-LQDD-------------RDVEHCEILQN 64 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~--gi~~~------~q~L~~----~G~~-L~d~-------------~tL~~~~i~~~ 64 (269)
..+.+.|-.-|||.++|++|.+.. |+|.+ ..-|-+ .|+. |.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 468889999999999999999884 45432 334544 2443 6553 48999999999
Q ss_pred CEEEEEEecC
Q 044874 65 SRIQLLVASD 74 (269)
Q Consensus 65 ~~i~l~~~~~ 74 (269)
+++.++-+..
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9999887654
No 259
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.35 E-value=0.59 Score=32.08 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=54.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
+.-.++-..++..||..++.+.+++-+.-.++..+..|+++++|.+.+++-...+.+.+...
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence 34456677899999999999999999999999999999999999999999988888887653
No 260
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=91.79 E-value=0.35 Score=32.44 Aligned_cols=60 Identities=12% Similarity=0.224 Sum_probs=42.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCce--EEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGY--FFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q--~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
....+++....||.+|.+.+..... .+ ... .+..+|+.... +.-+++||.|.+++ .++||
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p----~~--~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p-pv~GG 77 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP----QI--NNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP-PVSGG 77 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG----GG--TTCCCEEEETTEEECT-----TSEECTTCEEEEEC-SCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc----ch--hcceEEEEECCEECCC-----CCCcCCCCEEEEEC-CCCCC
Confidence 3456677777899999999887531 01 223 56778888765 36799999999986 56665
No 261
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=91.33 E-value=1.1 Score=42.30 Aligned_cols=66 Identities=15% Similarity=0.332 Sum_probs=47.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC------CceEEEec----Ce-eecCC-------------CccccccC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ------DGYFFIYK----QN-VMDDD-------------RSFRWHHV 252 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~------~~q~l~~~----g~-~L~d~-------------~tL~~~~i 252 (269)
..+.++|-.+|||..+|++|-+.-.+ |.|. +.+-|.++ |+ +|.|. +||.+|+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk---~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V 350 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYK---GVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKV 350 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTT---TSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTC
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHc---CCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCC
Confidence 45888898999999999999864322 5553 34556652 33 45551 49999999
Q ss_pred CCCCEEEEecCcc
Q 044874 253 GQGDTIEIFNGSV 265 (269)
Q Consensus 253 ~~~~~i~l~~~~~ 265 (269)
.+|++|.+++...
T Consensus 351 ~dga~v~L~p~~~ 363 (644)
T 3hm6_X 351 PDGATVALVPCLT 363 (644)
T ss_dssp CTTCEEEEEEC--
T ss_pred CCCcEEEEEeccc
Confidence 9999999987543
No 262
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=91.27 E-value=0.11 Score=35.38 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=39.7
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+++....||.+|.+.+ +++.....+..+|+....+ +-+++||.|.+++ .|+||
T Consensus 25 ~~~~~~~Tv~dLl~~L---------~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p-pv~GG 77 (77)
T 1rws_A 25 IEWREGMKVRDILRAV---------GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP-VVSGG 77 (77)
T ss_dssp CCCCSSCCHHHHHHTT---------TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC-CCCCC
T ss_pred EECCCCCcHHHHHHHh---------CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc-ccccC
Confidence 4566678999997654 5666666677889988754 6799999999986 56655
No 263
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.67 E-value=1 Score=30.04 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=46.4
Q ss_pred CEEEEEcCCCC-EEEEEEcCCCCHHHHHHHHHHHhCCCC--CcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 1 MDVIFEPQRGK-AFTIEVGFFDTVLEIKEKIEKYQGIPV--PKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 1 M~i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~~gi~~--~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
|+|+|+....- .-.+++ ...||.+|.+.+....++.. ....+..||....+ .+.-+++|+.|.+.-...||
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 88889865311 134566 56899999999986543322 34566778876442 34567889999887554443
No 264
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.62 E-value=0.9 Score=37.60 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=46.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC-ceEEEe-c----CeeecC-CCccccccCCCCCEEEE
Q 044874 198 RIPVEVNASDNVSELRKELQKLHQRYHFHLPQD-GYFFIY-K----QNVMDD-DRSFRWHHVGQGDTIEI 260 (269)
Q Consensus 198 ~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~-~q~l~~-~----g~~L~d-~~tL~~~~i~~~~~i~l 260 (269)
.++..++..+||.+|++.++.. ++++.+ ..||-. . ...|+| +.||.++++.++..|.|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~-----~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~ill 217 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKL-----FNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVI 217 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHH-----TTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEE
T ss_pred eEEEEecccCcHHHHHHHHHHH-----hCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEE
Confidence 3556779999999999999996 599987 577663 2 346665 58999999999998766
No 265
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.59 E-value=0.7 Score=37.89 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=46.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC-ceEEE--ec---CeeecC-CCccccccCCCCCEEEEe
Q 044874 198 RIPVEVNASDNVSELRKELQKLHQRYHFHLPQD-GYFFI--YK---QNVMDD-DRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 198 ~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~-~q~l~--~~---g~~L~d-~~tL~~~~i~~~~~i~l~ 261 (269)
.+++.++..+||.+|++.++.. +++|.+ ..||- |. ...|+| +.||.++++.++..|.|=
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~-----~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKI-----FSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHH-----TTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred ceEEEEcccchHHHHHHHHHHH-----hCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 3567789999999999999997 599987 56655 32 235566 579999999999998763
No 266
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.52 E-value=1.9 Score=30.42 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=47.2
Q ss_pred CEEEEEcCC------C-CEEEEEEcCCCCHHHHHHHHHHHhC-C----------CCCcEEEEEcCEEcCCCCccccCCCC
Q 044874 1 MDVIFEPQR------G-KAFTIEVGFFDTVLEIKEKIEKYQG-I----------PVPKQTLVFNGQVLQDDRDVEHCEIL 62 (269)
Q Consensus 1 M~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~I~~~~g-i----------~~~~q~L~~~G~~L~d~~tL~~~~i~ 62 (269)
|+|+|+... | ....+++....||.+|.+.+..... + ......+..||+.... ++-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678887552 3 4677888888999999999988742 1 1234567778887653 55678
Q ss_pred CCCEEEEEEe
Q 044874 63 QNSRIQLLVA 72 (269)
Q Consensus 63 ~~~~i~l~~~ 72 (269)
+|+.|.++-.
T Consensus 85 dGDeV~i~pp 94 (98)
T 1vjk_A 85 DGDVVGVFPP 94 (98)
T ss_dssp TTCEEEEESC
T ss_pred CCCEEEEECC
Confidence 8999887643
No 267
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=90.41 E-value=1.7 Score=40.93 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=47.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCC------CCceEEEe-cC---e-eecC---------C----CccccccC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLP------QDGYFFIY-KQ---N-VMDD---------D----RSFRWHHV 252 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p------~~~q~l~~-~g---~-~L~d---------~----~tL~~~~i 252 (269)
..+.++|-.+|||..+|++|-+.-.+ |.| ++.+-|.+ .| + +|.| + .||.+|+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk---~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V 323 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYK---GIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQV 323 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTT---TSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTC
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHc---CCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCC
Confidence 56888899999999999998875432 555 34466665 22 2 4544 1 48999999
Q ss_pred CCCCEEEEecCcc
Q 044874 253 GQGDTIEIFNGSV 265 (269)
Q Consensus 253 ~~~~~i~l~~~~~ 265 (269)
.+|.++.+++...
T Consensus 324 ~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 324 TDGSLVALVPKQV 336 (627)
T ss_dssp CTTCEEEEEEC--
T ss_pred CCCceEEEEeccc
Confidence 9999999987543
No 268
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=89.54 E-value=2.6 Score=31.22 Aligned_cols=60 Identities=28% Similarity=0.355 Sum_probs=42.1
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHH----hCCCCC----cEEEEE--c--CEEcCC----------C----CccccCCCCCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKY----QGIPVP----KQTLVF--N--GQVLQD----------D----RDVEHCEILQN 64 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~----~gi~~~----~q~L~~--~--G~~L~d----------~----~tL~~~~i~~~ 64 (269)
..+.+.|-.-|||.++|++|.+. .+.|.+ .+.|-+ + +..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888898999999999998765 266543 344444 1 223322 1 56888999999
Q ss_pred CEEEEE
Q 044874 65 SRIQLL 70 (269)
Q Consensus 65 ~~i~l~ 70 (269)
+++-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999775
No 269
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=88.61 E-value=1.2 Score=30.98 Aligned_cols=61 Identities=10% Similarity=0.107 Sum_probs=42.9
Q ss_pred CCCEEEEEEcCC-CCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 9 RGKAFTIEVGFF-DTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 9 ~g~~~~l~v~~~-~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
+|+. ++++.. .||.+|.+.+ ++++....+..||..+.. ....+.-+++|+.|.++-...||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcccccC
Confidence 4554 445665 8999998875 677777788889988753 23455668899999988655443
No 270
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=88.37 E-value=1.5 Score=32.03 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=44.9
Q ss_pred ceeEEEEecCC------C-eEEEEEecC---CCcHHHHHHHHHHhhhccCCCCCCCceEEE-ecC------eeecCCCc-
Q 044874 185 KLKLLVLTQCG------N-KRIPVEVNA---SDNVSELRKELQKLHQRYHFHLPQDGYFFI-YKQ------NVMDDDRS- 246 (269)
Q Consensus 185 ~~~i~V~~~~g------~-~~~~l~v~~---~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~-~~g------~~L~d~~t- 246 (269)
.|++.|+-+.+ . +.+.++++. ..||.+|-+.+.++. |...-+|+ -+| .+|-|+.-
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~-------~~~~~~lf~~~g~lr~~i~VlVN~~di 83 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL-------LKERPELFIQGDSVRPGILVLINDADW 83 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT-------CCSCHHHHCCSSSCCSSEEEEESSSBH
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc-------cchhHhhCccCCcccCCeEEEECCeee
Confidence 36777765443 2 356677773 369999999998853 22221111 011 12333331
Q ss_pred -c---ccccCCCCCEEEEecCcccCCC
Q 044874 247 -F---RWHHVGQGDTIEIFNGSVTGGS 269 (269)
Q Consensus 247 -L---~~~~i~~~~~i~l~~~~~~~~~ 269 (269)
+ .+|-+++||.|.+++ .+.||+
T Consensus 84 ~~l~gldt~L~dGDeV~iip-~vaGG~ 109 (114)
T 1wgk_A 84 ELLGELDYQLQDQDSILFIS-TLHGGS 109 (114)
T ss_dssp HHHCTTTCBCCSSEEEEEEE-CSCCCC
T ss_pred eccCCcCcCCCCCCEEEEeC-CCCCCC
Confidence 2 458899999998887 566663
No 271
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=88.09 E-value=0.52 Score=35.48 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc
Q 044874 13 FTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN 46 (269)
Q Consensus 13 ~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 46 (269)
.++.|..++|+.+|+..|++.+|+|+++|||..-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678889999999999999999999999999874
No 272
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.70 E-value=1.6 Score=30.03 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=38.0
Q ss_pred EEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe
Q 044874 188 LLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN 239 (269)
Q Consensus 188 i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~ 239 (269)
+.|+.... -++.+.|.+.-+..+|+++|.++ +.+|++...|.|+-.
T Consensus 6 ~~VKV~~~-~tvairvp~~~~y~~L~~~l~~k-----L~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKK-----LELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS-SEEEEEECTTCCHHHHHHHHHHH-----TTCCGGGCCEEECCT
T ss_pred EEEEEEEE-EEEEEECCCCCCHHHHHHHHHHH-----hCCCcceeEEEeeCC
Confidence 34444454 69999999999999999999997 588888888998764
No 273
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=87.70 E-value=0.78 Score=30.74 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=48.5
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+| +|+.+.+ ...||.+|-+. .++++...-+..||..+.. ....++-+++|+.|.++-...||.
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECCCCCCC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEccccCCc
Confidence 66655 4665544 56899998764 6888888888999988753 345566788899999887666664
No 274
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=87.68 E-value=2.4 Score=29.04 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=40.6
Q ss_pred EecCCCcHHHHHHHHHHhhhcc-------CCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 202 EVNASDNVSELRKELQKLHQRY-------HFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 202 ~v~~~~tV~~lK~~i~~~~~~~-------~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+++...||.+|.+.+....... .-| ......+..+|+..... .-.++-+++||.|.+++ .++||
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~p-pv~GG 90 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFP-PVAGG 90 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEEC-CTTCC
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeC-CCCCC
Confidence 4555689999999998753100 001 11345566788766522 22355799999999986 56665
No 275
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=85.59 E-value=4.7 Score=27.86 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=39.4
Q ss_pred EEecCCCcHHHHHHHHHHhhhccC--------CCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 201 VEVNASDNVSELRKELQKLHQRYH--------FHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~--------~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+++ ...||.+|.+.+..+..... .+-......+.-||+......- .++-+++||.|.+++ .|+||
T Consensus 21 ~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~P-pv~GG 93 (93)
T 3dwg_C 21 VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILP-AVAGG 93 (93)
T ss_dssp EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEE-CCTTC
T ss_pred Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEEC-CCCCC
Confidence 554 45799999999988641100 0000112445567766553222 356799999999987 56665
No 276
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=85.46 E-value=4.9 Score=27.74 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=47.2
Q ss_pred CEEEEEcC------CCCEEEEEEcCCCCHHHHHHHHHHHhC-C-----C-------CCcEEEEEcCEEcCCCCccccCCC
Q 044874 1 MDVIFEPQ------RGKAFTIEVGFFDTVLEIKEKIEKYQG-I-----P-------VPKQTLVFNGQVLQDDRDVEHCEI 61 (269)
Q Consensus 1 M~i~vk~~------~g~~~~l~v~~~~tV~~lK~~I~~~~g-i-----~-------~~~q~L~~~G~~L~d~~tL~~~~i 61 (269)
|+|+|+.. .|....+++ ...||.+|.+.+..++. + . .....+..||....+..- .++-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 78888754 233334664 46799999999998753 0 1 113567778887653221 34568
Q ss_pred CCCCEEEEEEecCCC
Q 044874 62 LQNSRIQLLVASDNK 76 (269)
Q Consensus 62 ~~~~~i~l~~~~~~g 76 (269)
.+|+.|.++-...||
T Consensus 79 ~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 79 ADGDSVTILPAVAGG 93 (93)
T ss_dssp CTTCEEEEEECCTTC
T ss_pred CCCCEEEEECCCCCC
Confidence 889999888665554
No 277
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=84.62 E-value=1.5 Score=30.96 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=39.1
Q ss_pred CeEEEEEec--CCCcHHHHHHHHHHhhhccCCCCCCCce-EEEecC------eeecCCC---cc--ccccCCCCCEEEEe
Q 044874 196 NKRIPVEVN--ASDNVSELRKELQKLHQRYHFHLPQDGY-FFIYKQ------NVMDDDR---SF--RWHHVGQGDTIEIF 261 (269)
Q Consensus 196 ~~~~~l~v~--~~~tV~~lK~~i~~~~~~~~~~~p~~~q-~l~~~g------~~L~d~~---tL--~~~~i~~~~~i~l~ 261 (269)
.+...+++. ...||.+|.+.+.++.. +. .... .|.-+| .++-|+. -+ .++-+++||.|.++
T Consensus 19 ~~~~~~~l~~~~~~Tv~~L~~~L~~~~~----~~-~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 19 QRVHKIKMDKEDPVTVGDLIDHIVSTMI----NN-PNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFT 93 (99)
T ss_dssp CCEEEEEECSCSCCBHHHHHHHHHHHTC----SS-GGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEE
T ss_pred CcEEEEecCCCCCCcHHHHHHHHHHHCc----hh-hHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEE
Confidence 355667766 67899999999988631 11 0000 000111 1222222 11 35679999999998
Q ss_pred cCcccCC
Q 044874 262 NGSVTGG 268 (269)
Q Consensus 262 ~~~~~~~ 268 (269)
+ .|+||
T Consensus 94 P-pv~GG 99 (99)
T 2qjl_A 94 S-TLHGG 99 (99)
T ss_dssp E-CTTCC
T ss_pred C-CCCCC
Confidence 7 67776
No 278
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=84.33 E-value=1.7 Score=28.23 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=44.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
|+|+| +|+. +++....|+.+|.+.+ ++++....+..+|..+.. ....+.-+++|+.|.++-...|
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~~V~G 65 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQVIAG 65 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEESCCC
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEeeccc
Confidence 56655 4564 4556778999998875 677777788889987753 2233456788999988765444
No 279
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=84.14 E-value=7.9 Score=26.36 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=43.5
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhC-C-----C-----CCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQG-I-----P-----VPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~g-i-----~-----~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
....++++...||.+|.+.+..... + . .....+..||+.... ++-+.+|+.|.+.-...||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 5678888878999999999988753 1 1 012567788887764 4557789999887554443
No 280
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=81.21 E-value=8.5 Score=32.46 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=52.9
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEEE---cCE--EcCCCCccccCCCCCCCEEEEEEe
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLVF---NGQ--VLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~---~G~--~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|.+.|..++| ++.+.+++..|+.++=+.|+...|+.... .-|.+ +|. .|+.+..+.+.++..+....+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4678888888 68899999999999999999999986544 56666 233 477788888876655544444433
No 281
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=80.89 E-value=1.7 Score=29.48 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=49.1
Q ss_pred CEEEEEcCCCCEEEEEEc--CCCCHHHHHHHHHHHhCCC-CCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCCCC
Q 044874 1 MDVIFEPQRGKAFTIEVG--FFDTVLEIKEKIEKYQGIP-VPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~--~~~tV~~lK~~I~~~~gi~-~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g~ 77 (269)
|+|+| +|+.+ +++ ...||.+|-+. .+++ +...-+..||..+.. ....++-+++|+.|.++--..||.
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCSC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCCC
Confidence 67766 46644 455 56899998775 5788 777788899998764 446677788899999886666654
No 282
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=80.41 E-value=11 Score=35.43 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=46.3
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHh--CCCC------CcEEEEE----cCE-EcCCC-------------CccccCCCCC
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQ--GIPV------PKQTLVF----NGQ-VLQDD-------------RDVEHCEILQ 63 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~----~G~-~L~d~-------------~tL~~~~i~~ 63 (269)
...+.+.|-.-|||.++|++|-+.. |.|. +...|-+ .|+ .|.|. .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568888889999999999998873 4443 4455654 233 34442 5899999999
Q ss_pred CCEEEEEEecC
Q 044874 64 NSRIQLLVASD 74 (269)
Q Consensus 64 ~~~i~l~~~~~ 74 (269)
|+++-++-+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999987664
No 283
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=80.20 E-value=10 Score=32.37 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=52.7
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEEE--cCE--EcCCCCccccCCCCCCCEEEEEEe
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLVF--NGQ--VLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~--~G~--~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.+.|..++| ++.+.+++..|+.++=+.|+...|+...+ .-|.| +|. -|+.+..+.+.++..+....+..+
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 567888888 78899999999999999999999986533 56666 343 378888899887655554444433
No 284
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=79.26 E-value=2.3 Score=30.26 Aligned_cols=69 Identities=7% Similarity=0.174 Sum_probs=47.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC---C----ceEEEecC-eeecC------CCccccccCCCCCEEEEec
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ---D----GYFFIYKQ-NVMDD------DRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~---~----~q~l~~~g-~~L~d------~~tL~~~~i~~~~~i~l~~ 262 (269)
....++++++.|..+|-+.+.+.. +.++.=|. . .-.|+..+ ..|++ +++|.+-|+.+|+.|+|-.
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p-~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSA-SLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCT-TCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred CcEEEEECCchhHHHHHHHHHhCh-HhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 355689999999999999999953 22222221 1 33444444 34544 5789999999999999976
Q ss_pred Cccc
Q 044874 263 GSVT 266 (269)
Q Consensus 263 ~~~~ 266 (269)
..++
T Consensus 84 ~~~p 87 (98)
T 1y8x_B 84 VTTP 87 (98)
T ss_dssp TTCS
T ss_pred CCCc
Confidence 5543
No 285
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=77.60 E-value=4.8 Score=28.33 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHhhhccCCCC-CCC----ce-------EEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 206 SDNVSELRKELQKLHQRYHFHL-PQD----GY-------FFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~-p~~----~q-------~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
..||.+|.+.+..+......-+ ... .. .+..||+..... .-.++-+++||.|.+++ .|+||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~~~~~L~~gD~V~i~p-pv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EGLETLLKDSDEIGILP-PVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TSTTSCCCTTEEEEEEC-CCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CCCCCCCCCCCEEEEEC-CCCCC
Confidence 6899999999988632100000 000 12 556677655322 12355799999999987 56665
No 286
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.95 E-value=12 Score=35.28 Aligned_cols=64 Identities=20% Similarity=0.404 Sum_probs=45.7
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHh--CCCC------CcEEEEE----cCE-EcCCC-------------CccccCCCCCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQ--GIPV------PKQTLVF----NGQ-VLQDD-------------RDVEHCEILQN 64 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~--gi~~------~~q~L~~----~G~-~L~d~-------------~tL~~~~i~~~ 64 (269)
..+.+.|-.-|||.++|++|.+.. |.|. +...|-+ .|+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 357888889999999999999663 4443 3445555 133 35542 58999999999
Q ss_pred CEEEEEEecC
Q 044874 65 SRIQLLVASD 74 (269)
Q Consensus 65 ~~i~l~~~~~ 74 (269)
+++.++-+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9998876654
No 287
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=76.71 E-value=11 Score=26.11 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=35.9
Q ss_pred EEEEc-CCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEEEc
Q 044874 3 VIFEP-QRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLVFN 46 (269)
Q Consensus 3 i~vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~ 46 (269)
|+||. .+|..+.+.++++.+..+|.+++.+.++++..+ ..+.|.
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 44542 468899999999999999999999999987655 677775
No 288
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=76.61 E-value=7.5 Score=26.69 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=29.2
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF 45 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~ 45 (269)
++..+.+.|+++.+..+|+.+|..+..+. .+.+++
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ 54 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQT 54 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEE
Confidence 56789999999999999999999999884 444433
No 289
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=76.44 E-value=11 Score=27.44 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=45.9
Q ss_pred CEEEEEcCC------C--CEEEEEEcC---CCCHHHHHHHHHHHhCCCCCcEEEEEc-CE------EcCCCCc--c---c
Q 044874 1 MDVIFEPQR------G--KAFTIEVGF---FDTVLEIKEKIEKYQGIPVPKQTLVFN-GQ------VLQDDRD--V---E 57 (269)
Q Consensus 1 M~i~vk~~~------g--~~~~l~v~~---~~tV~~lK~~I~~~~gi~~~~q~L~~~-G~------~L~d~~t--L---~ 57 (269)
|+|+|+... | +.+.++++. ..||.+|-+.+.+.+ |..+.+|+.. |+ .|-++.. + .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 678887542 3 366788873 369999999998775 1112222211 11 1222221 1 3
Q ss_pred cCCCCCCCEEEEEEecCCCC
Q 044874 58 HCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~g~ 77 (269)
++-+++++.|.++-...||.
T Consensus 90 dt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TCBCCSSEEEEEEECSCCCC
T ss_pred CcCCCCCCEEEEeCCCCCCC
Confidence 57789999999888777774
No 290
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=76.18 E-value=11 Score=26.74 Aligned_cols=75 Identities=19% Similarity=0.133 Sum_probs=50.0
Q ss_pred CCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCce-EEE------ecCeeecCCCccc----cc
Q 044874 182 GPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGY-FFI------YKQNVMDDDRSFR----WH 250 (269)
Q Consensus 182 ~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q-~l~------~~g~~L~d~~tL~----~~ 250 (269)
..++.-|.|-..+| ...++.|++.+|+.++=+.+.++. ++..+.- .|+ +--+.++|...|- ..
T Consensus 6 ~~~k~vvkvf~~Dg-ssksi~V~~~~Ta~dv~~~L~~K~-----~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W 79 (100)
T 1wgr_A 6 SGRPHVVKVYSEDG-ACRSVEVAAGATARHVCEMLVQRA-----HALSDETWGLVECHPHLALERGLEDHESVVEVQAAW 79 (100)
T ss_dssp CCSCEEEEEEETTS-CEEEEEECTTCCHHHHHHHHHCSS-----SCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTS
T ss_pred cCCCEEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHHc-----CCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhC
Confidence 34456666666777 888999999999999999999985 4443322 222 2347788876544 44
Q ss_pred cCCCCCEEEEec
Q 044874 251 HVGQGDTIEIFN 262 (269)
Q Consensus 251 ~i~~~~~i~l~~ 262 (269)
.+.....+++.+
T Consensus 80 ~~~s~nr~~F~k 91 (100)
T 1wgr_A 80 PVGGDSRFVFRK 91 (100)
T ss_dssp CSSSCCEEEECS
T ss_pred ccCCCcEEEEec
Confidence 455666655543
No 291
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=75.82 E-value=10 Score=33.19 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=42.5
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCE-E-cCCCCccccCCCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQ-V-LQDDRDVEHCEIL 62 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~-~-L~d~~tL~~~~i~ 62 (269)
.-....+.+.+..|+.++++++++.++++++.|.+.+.+. . ++.......|.-.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 4456778889999999999999999999999999999873 3 3445555555443
No 292
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=74.81 E-value=14 Score=31.34 Aligned_cols=73 Identities=5% Similarity=-0.069 Sum_probs=53.3
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEEEc---C--EEcCCCCccccCCCCCCCEEEEEEec
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLVFN---G--QVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~---G--~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
|.+.|..++|....+.+++..|+.++=+.|+.+.|+.... .-|.|. | ..|+.++.+.+........+.+.++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvkf 96 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVKF 96 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEESS
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEEE
Confidence 4678999999999999999999999999999999976543 566663 3 24777788877654334455554443
No 293
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=73.08 E-value=22 Score=25.10 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=55.4
Q ss_pred EEEEEcCCC---CEEEEEEcCCCCHHHHHHHHHHHhCCCCCc--EEEEEcC---EEcCCCCccccCCCCCCCEEEEEE
Q 044874 2 DVIFEPQRG---KAFTIEVGFFDTVLEIKEKIEKYQGIPVPK--QTLVFNG---QVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 2 ~i~vk~~~g---~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~--q~L~~~G---~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
+|+|...+. ...++.|..+.-|+-+.-++-++..++.+. --|...- ..|.-..+|..|||+.++.+++..
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 577877654 568999999999999999999888776553 4555532 357889999999999999988764
No 294
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=72.88 E-value=18 Score=33.95 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=52.7
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCC-cEEEEEc---C--EEcCCCCccccCCCCCCCEEEEEEe
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVP-KQTLVFN---G--QVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-~q~L~~~---G--~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
.+.|..++| ++.+.+++..|+.+|=..|+...|+... .+-|.|. | ..|+.+..+.+.++..+....+.++
T Consensus 6 ~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 6 NVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 577888888 7889999999999999999999998644 3667663 2 3577788888877665555444444
No 295
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=72.76 E-value=5.6 Score=25.86 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=39.2
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
|.+.|..++| +. .+++...|+.++-+.+... ++........+|+..+-+ +-+++|+.|.++.
T Consensus 1 m~i~i~~p~g-~~--~~~~~g~T~~dla~~i~~~-------l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKG-EI--KRLPQGATALDFAYSLHSD-------LGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTC-CE--EEECTTCBHHHHHHHHCSH-------HHHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCC-CE--EEcCCCCcHHHHHHHHhhc-------cccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 4566666677 54 4677889999998877431 111222234577766543 5667889888874
No 296
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.85 E-value=22 Score=24.59 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=36.3
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEecCe
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIYKQN 239 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~~g~ 239 (269)
..++|.+. ..| ..+.+.+++.-+..+|.++++++- +++.++ ..+-|...
T Consensus 5 ~~vkvK~~-~~g-di~~~~v~~~i~~~~L~~kv~~~~-----~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 5 SQVRVKAY-YRG-DIMITHFEPSISFEGLCNEVRDMC-----SFDNEQLFTMKWIDE 54 (89)
T ss_dssp SCEEEEEE-SSS-CEEEEEECTTCCHHHHHHHHHHHT-----TCCSSCCEEEEECCS
T ss_pred CeEEEEEE-eCC-eEEEEECCCCCCHHHHHHHHHHHh-----CCCCCCeEEEEEECC
Confidence 34666654 456 788899999999999999999974 666554 55666644
No 297
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=71.82 E-value=8.9 Score=29.91 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=40.9
Q ss_pred EEecCCCcHHHHHHHHHHhhhccCC------CCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCCC
Q 044874 201 VEVNASDNVSELRKELQKLHQRYHF------HLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGGS 269 (269)
Q Consensus 201 l~v~~~~tV~~lK~~i~~~~~~~~~------~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~~ 269 (269)
++++. .||.+|.+.+........- ++ .....+.-||+..... .-.++-+++||.|.+++ .|+||+
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l-~~~v~VaVNg~~v~~~-~~~dt~L~dGDeVai~P-pVsGG~ 88 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGEGL-AERVSVFLEGRDVRYL-QGLSTPLSPGATLDLFP-PVAGGG 88 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETTEE-CTTCEEEETTEEGGGT-TGGGCBCCTTCEEEEEC-SCCSEE
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhccccc-CCcEEEEECCEECCCc-CCCccCCCCCCEEEEEC-cccccc
Confidence 35555 8999999999876310000 01 1234566777776543 22356799999999987 577763
No 298
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=71.61 E-value=10 Score=24.12 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=41.7
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
+|+.+. + ...|+.+|.+.+ ++++....+..+|..+.. ....+.-+++|+.|.++-...|
T Consensus 5 Ng~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~~V~G 63 (64)
T 2cu3_A 5 NGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVALMQG 63 (64)
T ss_dssp TTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEECCCC
T ss_pred CCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEeeccc
Confidence 566554 4 568999998875 567777778889987753 2344556888999998865444
No 299
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=70.83 E-value=13 Score=23.98 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=41.0
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEe
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
|.++|...+|+. .++....|+.+|-..+.... +....-...+|+..+-+ +-+.+++.|.++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 888898878875 56677899999988774322 11223345688866554 44556777776643
No 300
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=70.62 E-value=24 Score=24.53 Aligned_cols=75 Identities=11% Similarity=-0.041 Sum_probs=43.8
Q ss_pred CEEEEEcC------C--CCEEEEEEc--CCCCHHHHHHHHHHHhCCC-CCc------------EEEEEcCEEcCCCCccc
Q 044874 1 MDVIFEPQ------R--GKAFTIEVG--FFDTVLEIKEKIEKYQGIP-VPK------------QTLVFNGQVLQDDRDVE 57 (269)
Q Consensus 1 M~i~vk~~------~--g~~~~l~v~--~~~tV~~lK~~I~~~~gi~-~~~------------q~L~~~G~~L~d~~tL~ 57 (269)
|+|+|+.. . .+...+++. ...||++|.+.+.++..-. +.. ..+..|+...+-. .=.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~-~~~ 80 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELE-GEK 80 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGG-TGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcccc-CCC
Confidence 57777633 2 345667776 6789999999999886311 100 1233344421100 013
Q ss_pred cCCCCCCCEEEEEEecCCC
Q 044874 58 HCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~g 76 (269)
++-+++|+.|.+.-...||
T Consensus 81 d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 81 DYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GCBCCTTCEEEEEECTTCC
T ss_pred CcCcCCCCEEEEECCCCCC
Confidence 5678899998887655443
No 301
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=69.88 E-value=12 Score=24.78 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=39.4
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhC-----CCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQG-----IPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~g-----i~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
....++ ....||.+|.+.+..... ++.....+..||+.... +.-+.+|+.|.+.-...|
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~G 80 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTG 80 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCC
Confidence 345555 567899999999875531 23334567889987753 446778999887654433
No 302
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=69.37 E-value=23 Score=24.66 Aligned_cols=71 Identities=10% Similarity=0.164 Sum_probs=43.1
Q ss_pred CEEEEEcCC------C-CEEEEEEcCCCCHHHHHHHHHHHhC-CCC---------CcE-------EEEEcCEEcCCCCcc
Q 044874 1 MDVIFEPQR------G-KAFTIEVGFFDTVLEIKEKIEKYQG-IPV---------PKQ-------TLVFNGQVLQDDRDV 56 (269)
Q Consensus 1 M~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~I~~~~g-i~~---------~~q-------~L~~~G~~L~d~~tL 56 (269)
|+|+|+... | +.+.++ ..||.+|.+.+..... +.. ... .+..||+..... .-
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TS
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CC
Confidence 678887553 3 344444 6899999999988742 111 012 566777755321 12
Q ss_pred ccCCCCCCCEEEEEEecCC
Q 044874 57 EHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~ 75 (269)
.++-+++|+.|.++-...|
T Consensus 80 ~~~~L~~gD~V~i~ppv~G 98 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSG 98 (99)
T ss_dssp TTSCCCTTEEEEEECCCSC
T ss_pred CCCCCCCCCEEEEECCCCC
Confidence 3456788999887654433
No 303
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=69.20 E-value=3.3 Score=29.99 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=36.3
Q ss_pred eEEEEEecC----CCcHHHHHHHHHHhhhccCCCCCCCceEEE-ecC--e------eecCCCcc-----ccccCCCCCEE
Q 044874 197 KRIPVEVNA----SDNVSELRKELQKLHQRYHFHLPQDGYFFI-YKQ--N------VMDDDRSF-----RWHHVGQGDTI 258 (269)
Q Consensus 197 ~~~~l~v~~----~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~-~~g--~------~L~d~~tL-----~~~~i~~~~~i 258 (269)
+...++++. ..||.+|=+.+.+. ++...-.|. -.| . +|-|++-. .+|-+++||.|
T Consensus 21 ~~~~v~l~~~~g~~~TV~dLl~~L~~~-------~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V 93 (110)
T 2k9x_A 21 KQTSLQLDGVVPTGTNLNGLVQLLKTN-------YVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTV 93 (110)
T ss_dssp SCSEECCCCSCGGGCCHHHHHHHHTTT-------TCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEE
T ss_pred CeEEEEeCCcCCCCccHHHHHHHHHHH-------ccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEE
Confidence 344566663 24999988888774 222221111 122 1 34444433 35789999998
Q ss_pred EEecCcccCC
Q 044874 259 EIFNGSVTGG 268 (269)
Q Consensus 259 ~l~~~~~~~~ 268 (269)
.++. ++-||
T Consensus 94 ~fis-tlhg~ 102 (110)
T 2k9x_A 94 EFIS-TLHGG 102 (110)
T ss_dssp EEEE-CCCCC
T ss_pred EEeC-CCccc
Confidence 8765 55554
No 304
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=69.12 E-value=1.1 Score=32.51 Aligned_cols=75 Identities=7% Similarity=0.063 Sum_probs=44.6
Q ss_pred CEEEEEcCC------CCEEEEEEcC----CCCHHHHHHHHHHHhCCCCCcEEEEE-cC--E------EcCCCCcc-----
Q 044874 1 MDVIFEPQR------GKAFTIEVGF----FDTVLEIKEKIEKYQGIPVPKQTLVF-NG--Q------VLQDDRDV----- 56 (269)
Q Consensus 1 M~i~vk~~~------g~~~~l~v~~----~~tV~~lK~~I~~~~gi~~~~q~L~~-~G--~------~L~d~~tL----- 56 (269)
|+|+|+... |+...++++. ..||.+|-+.+.+.. +..+-+|+. +| . +|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 567776443 4555666663 249999888888765 222333331 23 1 23333333
Q ss_pred ccCCCCCCCEEEEEEecCCCC
Q 044874 57 EHCEILQNSRIQLLVASDNKP 77 (269)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~g~ 77 (269)
.+|-+++|+.|.++-...||.
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 357899999988887777775
No 305
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=66.16 E-value=3.1 Score=31.15 Aligned_cols=28 Identities=7% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCcchHHHHHHhhhhhcCCCCcceEEEe
Q 044874 114 DVNDTVLRLKEKIHEMESIPVNRLLVQS 141 (269)
Q Consensus 114 ~~~~TV~~lK~~I~~~~gip~~~q~L~~ 141 (269)
....|+.+|+..|++..|+|+++|||-.
T Consensus 63 ~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 63 LKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp CTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 3478999999999999999999999974
No 306
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.78 E-value=34 Score=24.40 Aligned_cols=77 Identities=9% Similarity=0.141 Sum_probs=55.2
Q ss_pred CCCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEE---ecCe--eecCCCccccccCCC
Q 044874 180 GMGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFI---YKQN--VMDDDRSFRWHHVGQ 254 (269)
Q Consensus 180 ~~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~---~~g~--~L~d~~tL~~~~i~~ 254 (269)
|.+..++.+.|-..+- .-+++.+..+.|+.+++..+.++- +...+.+.|+ ++|. +|+++..--.-.+.-
T Consensus 4 ~~~sD~i~~~Vy~~Dh-sy~tvr~~v~~sa~eIl~~va~kl-----~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~ 77 (104)
T 1wgy_A 4 GSSGEEIFCHVYITEH-SYVSVKAKVSSIAQEILKVVAEKI-----QYAEEDLALVAITFSGEKHELQPNDLVISKSLEA 77 (104)
T ss_dssp CCCSSCCCEEEECSSS-CEEEECCCTTCBSHHHHHHHHHHH-----TSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCS
T ss_pred CCCCCceEEEEEeccC-ceEEEEEeccchHHHHHHHHHHHh-----cCCccceEEEEEccCCcEeecCCcceEEEeeccc
Confidence 4445567777776654 778899999999999999999975 6665567766 6665 556655444456666
Q ss_pred CCEEEEec
Q 044874 255 GDTIEIFN 262 (269)
Q Consensus 255 ~~~i~l~~ 262 (269)
...|++.+
T Consensus 78 NgRLfvc~ 85 (104)
T 1wgy_A 78 SGRIYVYR 85 (104)
T ss_dssp SCEEEEEE
T ss_pred cceEEEee
Confidence 77788764
No 307
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=65.40 E-value=9.2 Score=25.12 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=39.4
Q ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCCCcE--EEEEcCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 11 KAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQ--TLVFNGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 11 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q--~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
....+++....||.+|.+.+.....- .... .+..||+....+ .-+++|+.|.+.-..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPV 74 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECTT-----SEECTTCEEEEECSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCCC-----CCcCCCCEEEEECCC
Confidence 45667777788999999998876420 1223 677899887653 456779988876433
No 308
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=64.92 E-value=30 Score=23.54 Aligned_cols=62 Identities=10% Similarity=0.134 Sum_probs=48.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhhhccCCCC-CCC-ceEEEecCee--ecCCCccccccCCCCCEEEEec
Q 044874 199 IPVEVNASDNVSELRKELQKLHQRYHFHL-PQD-GYFFIYKQNV--MDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 199 ~~l~v~~~~tV~~lK~~i~~~~~~~~~~~-p~~-~q~l~~~g~~--L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.-+-|+..+|...+=+++....- +..+ |.. -.+.-++|.. |..+.|+++.||++-+.|.++-
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~V--Grrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCV--NRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTB--TTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhc--ceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 34688999999999999887530 1122 222 4778899998 9999999999999999998863
No 309
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=62.86 E-value=15 Score=25.77 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=45.5
Q ss_pred ceeEEEE--ecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 185 KLKLLVL--TQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 185 ~~~i~V~--~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.|.|.|- .......+.+++....||.++=+...-.+.. -.+..+...+..+|+... .++-+++||.|.|++
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~--peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQF--PEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHC--TTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccC--CcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 4555542 2222356778999999999998776442210 123333456666788776 556689999999985
No 310
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.31 E-value=39 Score=31.65 Aligned_cols=70 Identities=10% Similarity=0.131 Sum_probs=52.0
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEecC-----eeecCCCccccccCCCCCE
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIYKQ-----NVMDDDRSFRWHHVGQGDT 257 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~~g-----~~L~d~~tL~~~~i~~~~~ 257 (269)
+.+.+.|..++| ++.+.|+++.|+.+|=..|+.+- |+.-.. .-|.|.. .-|+.++++.+.+++.+..
T Consensus 3 k~i~v~V~llDg--t~e~~vd~~tt~~ell~~V~~~L-----gL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~ 75 (575)
T 2i1j_A 3 KSMNVRVTTMDA--ELEFAIQQTTTGKQLFDQVVKTI-----GLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENP 75 (575)
T ss_dssp CEEEEEEECSSC--EEEEEEETTCBHHHHHHHHHHHH-----TCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSS
T ss_pred ceEEEEEEeCCC--eEEEEECCCCCHHHHHHHHHHHc-----CCCCccceeEEEEecCcchhHhhccccHHHhcccCCCC
Confidence 457888888887 67899999999999999999974 776543 3355532 3577788998887766665
Q ss_pred EEE
Q 044874 258 IEI 260 (269)
Q Consensus 258 i~l 260 (269)
..+
T Consensus 76 ~~L 78 (575)
T 2i1j_A 76 LQF 78 (575)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
No 311
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=59.26 E-value=52 Score=27.40 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=49.6
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEe---cCe--eecCCCccccccCCCCCEEE
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIY---KQN--VMDDDRSFRWHHVGQGDTIE 259 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~---~g~--~L~d~~tL~~~~i~~~~~i~ 259 (269)
+.+.|..++| ++.++++++.|+.+|=++|+++- |+.... .-|.| +|. -|+.++++.+.+++.+....
T Consensus 2 i~~~V~l~d~--~~~~~v~~~tt~~el~~~v~~~l-----~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~ 74 (294)
T 1ef1_A 2 ISVRVTTMDA--ELEFAIQPNTTGKQLFDQVVKTI-----GLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLL 74 (294)
T ss_dssp EEEEEEETTE--EEEEEECTTCBHHHHHHHHHHHH-----TCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEE
T ss_pred EEEEEEECCc--eEEEEECCCCcHHHHHHHHHHHc-----CCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEE
Confidence 5677877876 67899999999999999999975 776544 33554 233 46778899988766655443
Q ss_pred E
Q 044874 260 I 260 (269)
Q Consensus 260 l 260 (269)
+
T Consensus 75 l 75 (294)
T 1ef1_A 75 F 75 (294)
T ss_dssp E
T ss_pred E
Confidence 3
No 312
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=59.17 E-value=11 Score=26.67 Aligned_cols=37 Identities=11% Similarity=0.028 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCC-----cEEEEEc
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVP-----KQTLVFN 46 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~-----~q~L~~~ 46 (269)
+..+.+-|+++.+..+|..+|.++.+++.. ..+|-|.
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk 63 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 63 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE
Confidence 557999999999999999999999986522 2356664
No 313
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=58.81 E-value=48 Score=24.11 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=46.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHHH-hC-------CCCCcEEEEEcCEEc--CCCCccccCCCCCCCEEEEE
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKY-QG-------IPVPKQTLVFNGQVL--QDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~-~g-------i~~~~q~L~~~G~~L--~d~~tL~~~~i~~~~~i~l~ 70 (269)
-+.+-++++++.++|-+.+-.. ++ |+-+.-.+..+|+.. +.+++|++.|+...+.|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 3678899999999998876543 34 444455788999987 45799999999999988876
No 314
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=58.74 E-value=45 Score=28.21 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=51.4
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEe--cCe--eecCCCccccccCCCCCE
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIY--KQN--VMDDDRSFRWHHVGQGDT 257 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~--~g~--~L~d~~tL~~~~i~~~~~ 257 (269)
.+.+.+.|..++| ++.++++++.|+.+|=+.|+.+- |+.... .-|.| +|. -|+.++++.+.+++.+..
T Consensus 20 ~~~~~~~V~lldg--~~~~~v~~~t~~~el~~~v~~~l-----~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~ 92 (314)
T 1h4r_A 20 PKTFTVRIVTMDA--EMEFNCEMKWKGKDLFDLVCRTL-----GLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEP 92 (314)
T ss_dssp -CEEEEEEECSSC--EEEEEEETTCBHHHHHHHHHHHH-----TCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSS
T ss_pred CCeeEEEEEeCCc--eEEEEeCCCCcHHHHHHHHHHHh-----CCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCC
Confidence 4568888988887 68899999999999999999974 777543 33444 333 378888999987766554
Q ss_pred E
Q 044874 258 I 258 (269)
Q Consensus 258 i 258 (269)
.
T Consensus 93 ~ 93 (314)
T 1h4r_A 93 V 93 (314)
T ss_dssp E
T ss_pred E
Confidence 4
No 315
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=58.43 E-value=47 Score=23.63 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=49.9
Q ss_pred CceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCcceEEE---eCCe--eeccCCcccccCCCCCC
Q 044874 87 SKKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVNRLLVQ---SSGA--ELQDHRSLRDCELMDNA 161 (269)
Q Consensus 87 ~~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~~q~L~---~~g~--~L~d~~~L~~y~i~~~~ 161 (269)
++++-..|....... .........|+.+++..+.++.+...+.+.|. ++|. .|+++..--.=.+.-++
T Consensus 7 sD~i~~~Vy~~Dhsy-------~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~Ng 79 (104)
T 1wgy_A 7 GEEIFCHVYITEHSY-------VSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASG 79 (104)
T ss_dssp SSCCCEEEECSSSCE-------EEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSC
T ss_pred CCceEEEEEeccCce-------EEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccc
Confidence 344445555544433 44455567899999999999999887788887 6774 45555444344566677
Q ss_pred EEEEEEc
Q 044874 162 EIDVHVR 168 (269)
Q Consensus 162 ~i~l~~~ 168 (269)
.|++..+
T Consensus 80 RLfvc~k 86 (104)
T 1wgy_A 80 RIYVYRK 86 (104)
T ss_dssp EEEEEEC
T ss_pred eEEEeeh
Confidence 7888755
No 316
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=58.40 E-value=8.2 Score=37.04 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=41.9
Q ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc-CEEcCCCCccccC
Q 044874 9 RGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN-GQVLQDDRDVEHC 59 (269)
Q Consensus 9 ~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~-G~~L~d~~tL~~~ 59 (269)
..+...+.+.++.|+.+++..|++.+|++++.|.+++. |..+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 35556788899999999999999999999999999986 4456666666665
No 317
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=55.92 E-value=41 Score=22.50 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=38.6
Q ss_pred EEEcCCCCHHHHHHHHHHHhC------C-----CCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEEecCC
Q 044874 15 IEVGFFDTVLEIKEKIEKYQG------I-----PVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLVASDN 75 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~g------i-----~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~~~~~ 75 (269)
++++...||.+|.+.+..... + ......+..||...... .-.++-+++|+.|.++-...|
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~G 89 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAG 89 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCC
Confidence 456666899999999987742 1 01345677888766421 123456788999887654433
No 318
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=54.79 E-value=22 Score=25.14 Aligned_cols=67 Identities=19% Similarity=0.124 Sum_probs=45.5
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEE-E-----cCEEcCCCCcccc----CCCCCCCEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLV-F-----NGQVLQDDRDVEH----CEILQNSRIQL 69 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~-~-----~G~~L~d~~tL~~----~~i~~~~~i~l 69 (269)
|+|-..+|...+|.|++.+|+.++-+.+..+.+...+. --|+ . --+.++|+..+-+ +.+..+..+.+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 44456789999999999999999999999998755332 2332 1 1356788766544 44444554444
No 319
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=51.89 E-value=29 Score=24.45 Aligned_cols=59 Identities=3% Similarity=0.151 Sum_probs=40.1
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc----CEE--------cC------CCCccccCCCCCCCEEEEE
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN----GQV--------LQ------DDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~----G~~--------L~------d~~tL~~~~i~~~~~i~l~ 70 (269)
...++++++.|+.+|-+.+.+.-.+.-..=-|.+. ++. |+ -+++|.+.|+.+|..|++.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 45689999999999999999853322222223333 232 22 2477999999999998874
No 320
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=50.35 E-value=47 Score=24.52 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHhCCCCCcEEEEE--cCEEc-----CC--CCccccCCCCCCCEEEEEEe
Q 044874 20 FDTVLEIKEKIEKYQGIPVPKQTLVF--NGQVL-----QD--DRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 20 ~~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L-----~d--~~tL~~~~i~~~~~i~l~~~ 72 (269)
..|+.+|-+.+..++|++. ...+.- ..+.| +| +++|++.|+++|+.+.+.=.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 4699999888988899863 444442 23333 22 58999999999998887744
No 321
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=49.22 E-value=1e+02 Score=26.58 Aligned_cols=45 Identities=9% Similarity=0.112 Sum_probs=37.4
Q ss_pred EEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCe
Q 044874 190 VLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQN 239 (269)
Q Consensus 190 V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~ 239 (269)
+..........+.+++..|+.++++.++... +++++.|.|.|.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-----~i~~~~q~~l~~~~ 359 (396)
T 4eut_A 315 VFSLQQMTAHKIYIHSYNTATIFHELVYKQT-----KIISSNQELIYEGR 359 (396)
T ss_dssp EEETTTTEEEEEEECTTCBHHHHHHHHHHHH-----CCCSTTEEEESSSS
T ss_pred EEEeccceEEEEEcCchhHHHHHHHHHHHhc-----CCChhhhHHHhcCC
Confidence 3334444777889999999999999999975 99999999999983
No 322
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=49.08 E-value=23 Score=23.84 Aligned_cols=50 Identities=20% Similarity=0.247 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 208 NVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 208 tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+-++.++.++. +++..++ --+++.+|--..+||.+.|+.|-+.+.+-+.|
T Consensus 18 s~eEk~~lL~~------y~i~~~q-----LP~I~~~DPvar~~G~k~GdVvkI~R~S~taG 67 (77)
T 1eik_A 18 NESEAKRVLKE------LDAHPEQ-----LPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAE 67 (77)
T ss_dssp CHHHHHHHHHH------TTCCTTT-----SCCCBTTSHHHHGGGCCTTCEEEEEEEETTTE
T ss_pred CHHHHHHHHHH------cCCCHHH-----CCeeeCcCHhhHHhCCCCCCEEEEEECCCCCC
Confidence 44555555555 3676665 35677888888999999999999997665554
No 323
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=48.94 E-value=6.5 Score=26.21 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=34.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEcCEEcCCCCccccCCCCCCCEEEEEE
Q 044874 14 TIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFNGQVLQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 14 ~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
.+++....||.+|.+.+ ++++....+..+|+....+ +-+++|+.|.++-
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~p 72 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIP 72 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEc
Confidence 34556678999998764 5676667788899988654 4567788776553
No 324
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=48.29 E-value=53 Score=22.78 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=34.1
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEcCE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFNGQ 48 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~ 48 (269)
...+++.|++..+=.++|+.++..+++.+..- .+...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 36899999999999999999999999998875 5666776
No 325
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=45.85 E-value=75 Score=26.69 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=49.4
Q ss_pred CcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCc-eEEEec---C--eeecCCCccccccCCCCC
Q 044874 183 PRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDG-YFFIYK---Q--NVMDDDRSFRWHHVGQGD 256 (269)
Q Consensus 183 ~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~-q~l~~~---g--~~L~d~~tL~~~~i~~~~ 256 (269)
.+.+.+.|..++| ....++|++..|+.+|=.+++++- |+.... .-|.|. | .-|+.++++.+......-
T Consensus 15 ~~~~~~~V~lldg-t~~~~~vd~~tt~~el~~~v~~~l-----~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~ 88 (296)
T 3qij_A 15 YFQGHCKVSLLDD-TVYECVVEKHAKGQDLLKRVCEHL-----NLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPW 88 (296)
T ss_dssp --CCEEEEECTTS-CEEEEECCTTCBHHHHHHHHHHHH-----TCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CC
T ss_pred CceEEEEEEccCC-CEEEEEECCCCCHHHHHHHHHHHc-----CCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCc
Confidence 4568889999998 889999999999999999999975 776443 334443 2 346777888776543333
Q ss_pred EEEE
Q 044874 257 TIEI 260 (269)
Q Consensus 257 ~i~l 260 (269)
++++
T Consensus 89 ~l~f 92 (296)
T 3qij_A 89 NFTF 92 (296)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 326
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=45.52 E-value=22 Score=23.92 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 208 NVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 208 tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+-++.++.++. +++..+| --+++.+|--..+||.+.|+.|-+.+.+-+.|
T Consensus 16 s~eEk~~lL~~------y~i~~~q-----LPrI~~~DPvar~~G~k~GdVvkI~R~S~taG 65 (78)
T 1hmj_A 16 PKEEVEEILKR------YNIKIQQ-----LPKIYEDDPVIQEIGAKEGDVVRVIRKSPTAG 65 (78)
T ss_pred CHHHHHHHHHH------cCCCHHH-----CCeeeCcCHhhHHhCCCCCCEEEEEECCCCCC
Confidence 45565655555 2666555 35677888888999999999999998776665
No 327
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=45.34 E-value=69 Score=21.72 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHh-C--C---CCCcEEEEEcC--EEcCCCCccccCCCCCCCEEEEEEe
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQ-G--I---PVPKQTLVFNG--QVLQDDRDVEHCEILQNSRIQLLVA 72 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~-g--i---~~~~q~L~~~G--~~L~d~~tL~~~~i~~~~~i~l~~~ 72 (269)
...+.|+.++|+.++=++++... | + |-.-.+..++| ..|..+.|+++.||.+-..|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 35578999999999999998763 3 3 22246888998 8899999999999999988887653
No 328
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=44.56 E-value=74 Score=23.43 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCC-------CceEEEecCeeecC--CCccccccCCCCCEEEEec
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQ-------DGYFFIYKQNVMDD--DRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~-------~~q~l~~~g~~L~d--~~tL~~~~i~~~~~i~l~~ 262 (269)
..|..+|-+.++.+. |++. ..++|+|. -..+| +++|.+.||++|++|.++.
T Consensus 19 ~~TL~dLV~~l~~~~-----gy~~eiSV~~~~~~rLLyD-~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKY-----SYPQDISLLDASNQRLLFD-YDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHH-----TCCSSEEEEETTTTEEEEE-TTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhc-----CCCCcEEEEecCCCCeEeC-CCccccccCcHHHcCcCCCcEEEEEc
Confidence 458888888876653 5553 12444442 12233 4799999999999999874
No 329
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=43.79 E-value=73 Score=21.58 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=47.1
Q ss_pred EEEecCCCcHHHHHHHHHHhhhccCCCC-CCC--ceEEEecC--eeecCCCccccccCCCCCEEEEe
Q 044874 200 PVEVNASDNVSELRKELQKLHQRYHFHL-PQD--GYFFIYKQ--NVMDDDRSFRWHHVGQGDTIEIF 261 (269)
Q Consensus 200 ~l~v~~~~tV~~lK~~i~~~~~~~~~~~-p~~--~q~l~~~g--~~L~d~~tL~~~~i~~~~~i~l~ 261 (269)
-+-|+..+|...+=+++....- +..+ |.. -++.-++| ..|..+.|+.+.||.+-+.|.++
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsV--GrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~ 80 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSI--NRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDII 80 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTB--TTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhc--ceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEE
Confidence 4688999999999999887530 0123 222 37777999 99999999999999999999876
No 330
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=43.01 E-value=76 Score=21.53 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=48.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHh-C--CC--CCcEEEEEcCEE--cCCCCccccCCCCCCCEEEEEE
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQ-G--IP--VPKQTLVFNGQV--LQDDRDVEHCEILQNSRIQLLV 71 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~-g--i~--~~~q~L~~~G~~--L~d~~tL~~~~i~~~~~i~l~~ 71 (269)
...+.|+.++|+.++=++++... | +. |.-.+..++|.. |..+.++++.||++-..|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 35578999999999999998763 4 32 225788899987 9999999999999998888764
No 331
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=42.39 E-value=79 Score=21.55 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=26.4
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhh
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLH 220 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~ 220 (269)
|+|-+- ..+ ..|.+.|+.+-+..+|+.+|.++-
T Consensus 13 ~KVK~y-y~D-DIiAIrvP~di~~~~L~dKi~~RL 45 (85)
T 1ip9_A 13 TKIKFY-YKD-DIFALMLKGDTTYKELRSKIAPRI 45 (85)
T ss_dssp EEEEEC-BTT-CCEEEEECSCCCHHHHHHHHHHHH
T ss_pred eEEEEE-ecC-cEEEEECCCCCCHHHHHHHHHHHh
Confidence 444443 234 799999999999999999999974
No 332
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=41.94 E-value=56 Score=30.17 Aligned_cols=56 Identities=16% Similarity=0.097 Sum_probs=43.2
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC--CcEEEEEcC----EEcCCCCcc
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV--PKQTLVFNG----QVLQDDRDV 56 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~--~~q~L~~~G----~~L~d~~tL 56 (269)
|.+.|..++|....+.+++..|+.++-+.|+.+.|+.. +..-|++.. ..|.++..+
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i 278 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVV 278 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCch
Confidence 35778889999999999999999999999999999974 355666532 235555443
No 333
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=41.22 E-value=73 Score=21.77 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=28.2
Q ss_pred EEEEcCCCC-EEEEEEc-CCCCHHHHHHHHHHHhCCCCCcEEE
Q 044874 3 VIFEPQRGK-AFTIEVG-FFDTVLEIKEKIEKYQGIPVPKQTL 43 (269)
Q Consensus 3 i~vk~~~g~-~~~l~v~-~~~tV~~lK~~I~~~~gi~~~~q~L 43 (269)
|+-|....+ ..++.++ ...+|.+||..|..+.++-....-|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 445544333 4556666 5789999999999998876555544
No 334
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=40.05 E-value=41 Score=32.21 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=45.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec-CeeecCCCccccccC---------CCCCEEEEecC
Q 044874 197 KRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK-QNVMDDDRSFRWHHV---------GQGDTIEIFNG 263 (269)
Q Consensus 197 ~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~-g~~L~d~~tL~~~~i---------~~~~~i~l~~~ 263 (269)
+...+.+.+..|+.+++..|++.. ++|.+.|.|++. |-.|+.......|-+ .+...+++|+.
T Consensus 322 ~~~~~~i~~~~tl~~l~~~i~~~T-----~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 322 RVHTYPVTENENLQNLKSWLQQDT-----GIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp CCCEEECCTTCCHHHHHHHHHTTS-----CCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred ccceeecCCCccHHHHHHHHHHHh-----CCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 667789999999999999999964 999999888865 455666655555422 35667788764
No 335
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=39.55 E-value=65 Score=22.29 Aligned_cols=39 Identities=31% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEcCE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFNGQ 48 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~ 48 (269)
.+++++.|++..|=.++|+.++..+++.+..- .+...|+
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 47899999999999999999999999998775 4566665
No 336
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=39.02 E-value=85 Score=20.96 Aligned_cols=42 Identities=10% Similarity=-0.047 Sum_probs=36.5
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV 44 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 44 (269)
|.+...+++.-.++|.+..|+.+--.++.++.++.++....+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 556677888889999999999999999999999988877665
No 337
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.82 E-value=86 Score=21.42 Aligned_cols=43 Identities=14% Similarity=-0.036 Sum_probs=37.2
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF 45 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~ 45 (269)
|.+...+++.-.++|.+..|+.+--.++.++.++.++...++.
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~ 52 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR 52 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEEE
Confidence 5566778888999999999999999999999999988776663
No 338
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=37.55 E-value=15 Score=24.17 Aligned_cols=16 Identities=13% Similarity=0.434 Sum_probs=13.3
Q ss_pred cccccCCCCCEEEEec
Q 044874 247 FRWHHVGQGDTIEIFN 262 (269)
Q Consensus 247 L~~~~i~~~~~i~l~~ 262 (269)
-..+.+++|+|+|+|+
T Consensus 7 ~k~v~LkDGstvyiFK 22 (74)
T 2k0q_A 7 VKTYDLQDGSKVHVFK 22 (74)
T ss_dssp EEEEEBTTSCEEEEET
T ss_pred eeeEecCCCcEEEEEc
Confidence 3567789999999996
No 339
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=37.19 E-value=78 Score=23.00 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=40.1
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCc-EEEEEcCEEcCCCCccccC---CCCCCCEEEEEEe
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPK-QTLVFNGQVLQDDRDVEHC---EILQNSRIQLLVA 72 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~~~G~~L~d~~tL~~~---~i~~~~~i~l~~~ 72 (269)
+-|+.+.||++|...|.....+++++ .-|+.++.....+.++++. --..+..+++...
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 46889999999999999999998876 4555577755666666543 1113445666554
No 340
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.44 E-value=80 Score=21.82 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHhCCCCCcEEEEE--cCEEcCCCCccccCCCCCCCEEEEEEecC
Q 044874 21 DTVLEIKEKIEKYQGIPVPKQTLVF--NGQVLQDDRDVEHCEILQNSRIQLLVASD 74 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~~q~L~~--~G~~L~d~~tL~~~~i~~~~~i~l~~~~~ 74 (269)
.+..+|+.+...+++++...-+|+. +|..++|+.-+..+ +..|+.+++...
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~g 80 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEKG 80 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEETT
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcCC
Confidence 3799999999999999766667766 48877765443332 366666666653
No 341
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=36.33 E-value=80 Score=20.94 Aligned_cols=61 Identities=11% Similarity=0.158 Sum_probs=40.2
Q ss_pred eEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEec
Q 044874 187 KLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFN 262 (269)
Q Consensus 187 ~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 262 (269)
.|+|.+++| .. ++++...|+.|+=+.|... +......-..+|+...- ++-+++|++|.++.
T Consensus 7 ~i~v~tP~G-~~--~~lp~GaT~~D~A~~Ih~~-------lg~~~v~AkVNG~~v~L-----~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKG-DV--ISLPIGSTVIDFAYAIHSA-------VGNRMIGAKVDGRIVPI-----DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTS-CE--EEEETTCBHHHHHHHHCHH-------HHHTEEEEEETTEEECT-----TCBCCTTCBEEEEE
T ss_pred eEEEECCCC-CE--EEecCCCCHHHHHHHhhhh-------hhcceEEEEECCEEcCC-----CcccCCCCEEEEEc
Confidence 678888888 44 3678889999998877652 11111222346766543 35689999998874
No 342
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=35.32 E-value=1.1e+02 Score=20.96 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=12.8
Q ss_pred CCcHHHHHHHHHHhh
Q 044874 206 SDNVSELRKELQKLH 220 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~ 220 (269)
.-+|.+||++|.+++
T Consensus 28 ~Isv~dLKr~I~~~~ 42 (86)
T 2c7h_A 28 HISLCDLKKQIMGRE 42 (86)
T ss_dssp EEEHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHh
Confidence 348999999999976
No 343
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=34.88 E-value=32 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=29.2
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCC-----CCcEEEEEc
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIP-----VPKQTLVFN 46 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~-----~~~q~L~~~ 46 (269)
.+++-|+++.+..+|..+|..+.+.. ....+|-|.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk 42 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 42 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE
Confidence 57889999999999999999999965 355677774
No 344
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.93 E-value=61 Score=22.06 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQT 42 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~ 42 (269)
.+++++.|++..|=.++|+.++..+++.+..-+
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 468999999999999999999999999877654
No 345
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=33.19 E-value=68 Score=23.72 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=39.6
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCcEEEE-EcCEEc-CCCCccccC----CCCCCCEEEEEEe
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPKQTLV-FNGQVL-QDDRDVEHC----EILQNSRIQLLVA 72 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~-~~G~~L-~d~~tL~~~----~i~~~~~i~l~~~ 72 (269)
+-|+.+.||++|...|..+.++++++--.+ |.++.+ ..+.++++. +- ++..+++...
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd-eDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKD-EDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC-TTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCC-CCCEEEEEEe
Confidence 468889999999999999999998775555 655545 456666543 22 3445665544
No 346
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=32.60 E-value=1.3e+02 Score=20.99 Aligned_cols=43 Identities=12% Similarity=-0.110 Sum_probs=37.2
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV 44 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 44 (269)
.|.+-..+++.-.++|.+..|+.+--.++.+..++.++...++
T Consensus 19 ~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 19 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred EEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 3566677888889999999999999999999999988877666
No 347
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=32.55 E-value=1.4e+02 Score=21.66 Aligned_cols=76 Identities=7% Similarity=0.116 Sum_probs=50.4
Q ss_pred CCCcceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCC------CceEEE---ecCe--eecCCCcccc
Q 044874 181 MGPRKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQ------DGYFFI---YKQN--VMDDDRSFRW 249 (269)
Q Consensus 181 ~~~~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~------~~q~l~---~~g~--~L~d~~tL~~ 249 (269)
.+..++.+.|-..+- .-+++.+..+.+|.+++..+.++- ++.. +.+.|+ ++|. +|+++..--.
T Consensus 5 ~~~Dei~~~VY~~Dh-sy~tvr~~v~~sa~eIl~~va~kl-----~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~ 78 (120)
T 2dhz_A 5 SSGDEIFCRVYMPDH-SYVTIRSRLSASVQDILGSVTEKL-----QYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVF 78 (120)
T ss_dssp SSCCCEEECEECTTS-CCCCEEECTTCCHHHHHHHHHHHS-----TTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHH
T ss_pred CCCCcEEEEEEeccC-ceEEEEEeccccHHHHHHHHHHHh-----ccccccccccCceEEEEEccCCcEeecCCcceEEE
Confidence 334567777776653 667889999999999999999974 4433 356665 5664 4555544334
Q ss_pred ccCCCCCEEEEec
Q 044874 250 HHVGQGDTIEIFN 262 (269)
Q Consensus 250 ~~i~~~~~i~l~~ 262 (269)
-.+.-...|++.+
T Consensus 79 tsL~~NgRLfvc~ 91 (120)
T 2dhz_A 79 TALGINSHLFACT 91 (120)
T ss_dssp HHSCSSEEEEEEC
T ss_pred eeccccceEEEee
Confidence 4555567777764
No 348
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=32.44 E-value=1.3e+02 Score=25.18 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=46.3
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe---c----CeeecCCCcccc----ccC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY---K----QNVMDDDRSFRW----HHV 252 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~---~----g~~L~d~~tL~~----~~i 252 (269)
+++-+.|-..+| ....+.|++.+|+.+|=+.+..+. +++.+.-+-+| . -+.|+|...+.+ ...
T Consensus 30 ~k~ivkv~~~D~-ss~~l~V~~~~TA~dv~~~L~~k~-----~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ 103 (281)
T 4gmv_A 30 KKLVIRVHMSDD-SSKTMMVDERQTVRQVLDNLMDKS-----HCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTR 103 (281)
T ss_dssp CEEEEEEEETTS-CEEEEEEETTCBHHHHHHHHHHHS-----CCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCT
T ss_pred ccEEEEEEecCC-CEEEEEECCCCcHHHHHHHHHHhc-----CCCCCCCeEEEEEcCCccceeccccchhHHHHHHhccc
Confidence 445566666677 889999999999999998888875 44433322222 1 466777665544 234
Q ss_pred CCCCEEEEe
Q 044874 253 GQGDTIEIF 261 (269)
Q Consensus 253 ~~~~~i~l~ 261 (269)
.....+++.
T Consensus 104 ds~n~l~f~ 112 (281)
T 4gmv_A 104 DSQNKLIFM 112 (281)
T ss_dssp TCCCEEEEE
T ss_pred CCCceEEEE
Confidence 555666554
No 349
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=32.35 E-value=97 Score=29.43 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=38.4
Q ss_pred CEEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCC-CcEEEEE
Q 044874 1 MDVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPV-PKQTLVF 45 (269)
Q Consensus 1 M~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~-~~q~L~~ 45 (269)
|.+.|..++|....+++++..|+.++-+.|+.+.|+.. +..-|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45778899999999999999999999999999999643 4466766
No 350
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=32.03 E-value=36 Score=20.84 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCc
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDG 231 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~ 231 (269)
..||.+||+.+..+ |++...
T Consensus 7 kltV~eLK~~Lk~R------GL~~~G 26 (51)
T 1h1j_S 7 SLTVVQLKDLLTKR------NLSVGG 26 (51)
T ss_dssp GCCHHHHHHHHHHT------TCCCCS
T ss_pred HCcHHHHHHHHHHc------CCCCCC
Confidence 56999999999997 788753
No 351
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=31.77 E-value=91 Score=22.27 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=41.1
Q ss_pred cCCCCEEEEEEcCCCCHHHHHHHHHHHhC--------CCCCcEEEEE-c--CE--EcCC-CCccccCCCCCCCEEEEE
Q 044874 7 PQRGKAFTIEVGFFDTVLEIKEKIEKYQG--------IPVPKQTLVF-N--GQ--VLQD-DRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 7 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--------i~~~~q~L~~-~--G~--~L~d-~~tL~~~~i~~~~~i~l~ 70 (269)
..+|-.+.++++.+.|+.++|+.+-++-. -.++.-.+.+ + |. .+.| ++.|.+.... -..+.++
T Consensus 26 lPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLklv 102 (108)
T 2v1y_A 26 LPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLKVI 102 (108)
T ss_dssp CTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEEEE
T ss_pred cCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEEEE
Confidence 56899999999999999999998887722 2333333333 2 33 3644 4778887655 3344443
No 352
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=30.50 E-value=39 Score=20.61 Aligned_cols=20 Identities=45% Similarity=0.557 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCc
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDG 231 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~ 231 (269)
..+|.+||+.+..+ |+|...
T Consensus 12 klkV~eLK~eLk~R------gL~~~G 31 (50)
T 1zrj_A 12 RLKVNELREELQRR------GLDTRG 31 (50)
T ss_dssp GSCHHHHHHHHHHT------TCCCCS
T ss_pred HCcHHHHHHHHHHc------CCCCCC
Confidence 57999999999997 788653
No 353
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=30.23 E-value=1.4e+02 Score=20.92 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=53.1
Q ss_pred cceeEEEEecCC--CeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCC--ceEEEecCe---eecCCCccccccCCCCC
Q 044874 184 RKLKLLVLTQCG--NKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQD--GYFFIYKQN---VMDDDRSFRWHHVGQGD 256 (269)
Q Consensus 184 ~~~~i~V~~~~g--~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~--~q~l~~~g~---~L~d~~tL~~~~i~~~~ 256 (269)
=.+.|+|...+. ....++.|.....|.-+-.+|-++. .++.+ ...|-...+ .|.-..||..|||+.+.
T Consensus 18 WeL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki-----~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa 92 (102)
T 2kmc_A 18 WELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQM-----NIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADA 92 (102)
T ss_dssp EEEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHH-----CCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTS
T ss_pred EEEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhc-----ccccchHHhhhhhhhhchhhhhhhhhhhhhceeeee
Confidence 346777777443 3668889998899999999988765 55544 244443333 45667899999999999
Q ss_pred EEEEec
Q 044874 257 TIEIFN 262 (269)
Q Consensus 257 ~i~l~~ 262 (269)
.+++-+
T Consensus 93 ~L~ftp 98 (102)
T 2kmc_A 93 NLLFTP 98 (102)
T ss_dssp CEEEEE
T ss_pred eeeccC
Confidence 887754
No 354
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.80 E-value=83 Score=21.46 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEE
Q 044874 10 GKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTL 43 (269)
Q Consensus 10 g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L 43 (269)
..++++.|++..+=.++|+.++..+++.+..-+-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 4689999999999999999999999998776543
No 355
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=29.76 E-value=1.3e+02 Score=20.29 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc-CEEcCCCCccccCCCCCCCEEEEEEecCCC
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN-GQVLQDDRDVEHCEILQNSRIQLLVASDNK 76 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~-G~~L~d~~tL~~~~i~~~~~i~l~~~~~~g 76 (269)
...+.|........+-+-.++++.+|+..--++.+ |-=+...++-...-++.|+.+.++-|.+.|
T Consensus 25 fkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 25 YKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred ceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 34567888888888888889999999988777765 555677888888888899999999887754
No 356
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=29.42 E-value=22 Score=25.48 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=50.0
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc--EEEEEc---CEEcCCCCccccCCCCCCCEEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK--QTLVFN---GQVLQDDRDVEHCEILQNSRIQLL 70 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~--q~L~~~---G~~L~d~~tL~~~~i~~~~~i~l~ 70 (269)
|+|...+ ...++.|..+.-|+-+.-++-++..++.+. --|... -..|.-..+|..|||+.++.+++.
T Consensus 29 V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 29 VHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 3444333 678889999999999999999888766543 344443 235788999999999999987765
No 357
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=29.25 E-value=1e+02 Score=21.72 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhCCCCC--cEEEEE--cCEEcCCCCccccCCCCCCCEEEEEEec
Q 044874 21 DTVLEIKEKIEKYQGIPVP--KQTLVF--NGQVLQDDRDVEHCEILQNSRIQLLVAS 73 (269)
Q Consensus 21 ~tV~~lK~~I~~~~gi~~~--~q~L~~--~G~~L~d~~tL~~~~i~~~~~i~l~~~~ 73 (269)
.+..+|+.+...+++++.+ .-+|+. .|..++|+.=+.. +. ..|+.+++..
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~t--Lp-~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLC--LP-SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSS--SC-SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhc--CC-CCCEEEEEcC
Confidence 4899999999999999753 245554 6888876654443 22 4455555543
No 358
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=28.98 E-value=86 Score=21.77 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=31.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCCCcEE-EEEcCE
Q 044874 12 AFTIEVGFFDTVLEIKEKIEKYQGIPVPKQT-LVFNGQ 48 (269)
Q Consensus 12 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~-L~~~G~ 48 (269)
.+++.|++..|=.++|+.++..+++.+..-+ +...|+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 3899999999999999999999999988753 445554
No 359
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=28.12 E-value=1.7e+02 Score=21.21 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=47.6
Q ss_pred ceEEEEEecCCCCCCccccccceeecCCcchHHHHHHhhhhhcCCCCc------ceEEE---eCCe--eeccCCcccccC
Q 044874 88 KKIHLKINIPSNSKTHHHHHHLPLDMDVNDTVLRLKEKIHEMESIPVN------RLLVQ---SSGA--ELQDHRSLRDCE 156 (269)
Q Consensus 88 ~~i~i~Vk~~~~~~~~~~~~~~~~~v~~~~TV~~lK~~I~~~~gip~~------~q~L~---~~g~--~L~d~~~L~~y~ 156 (269)
+++-..|....... .........|+.+++..+.++.+...+ .+.|. ++|. .|+++..--.=.
T Consensus 8 Dei~~~VY~~Dhsy-------~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~ts 80 (120)
T 2dhz_A 8 DEIFCRVYMPDHSY-------VTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTA 80 (120)
T ss_dssp CCEEECEECTTSCC-------CCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHH
T ss_pred CcEEEEEEeccCce-------EEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEee
Confidence 44455555544433 445666788999999999999987654 77776 6774 455543333334
Q ss_pred CCCCCEEEEEEc
Q 044874 157 LMDNAEIDVHVR 168 (269)
Q Consensus 157 i~~~~~i~l~~~ 168 (269)
+.-++.|++..+
T Consensus 81 L~~NgRLfvc~k 92 (120)
T 2dhz_A 81 LGINSHLFACTR 92 (120)
T ss_dssp SCSSEEEEEECT
T ss_pred ccccceEEEeeh
Confidence 566777888755
No 360
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=27.42 E-value=88 Score=22.96 Aligned_cols=58 Identities=12% Similarity=-0.029 Sum_probs=39.3
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE-cCEEcCCCCccccC----CCCCCCEEEEEEec
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF-NGQVLQDDRDVEHC----EILQNSRIQLLVAS 73 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~~----~i~~~~~i~l~~~~ 73 (269)
+-|+.+.||++|...|..+..+++++--.+| ++.....+.++++. +- ++..+++....
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kd-eDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHD-EDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCC-TTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCC-CCCeEEEEecC
Confidence 4688999999999999999999887744444 55433556666443 22 34456665543
No 361
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=27.23 E-value=1.2e+02 Score=21.64 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=48.3
Q ss_pred cceeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCC---CCCCCceEEEe-c--C--eee-cCCCccccccCCC
Q 044874 184 RKLKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHF---HLPQDGYFFIY-K--Q--NVM-DDDRSFRWHHVGQ 254 (269)
Q Consensus 184 ~~~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~---~~p~~~q~l~~-~--g--~~L-~d~~tL~~~~i~~ 254 (269)
..+.+..-.++| --+++++..+.|+.++|+++=+.-.+..+ --.++.|.|.. + | .++ ++.+.|.+...-
T Consensus 18 ~~v~v~~LlPnG-i~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf- 95 (108)
T 2v1y_A 18 PRILVECLLPNG-MIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF- 95 (108)
T ss_dssp SEEEEEEECTTS-CEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-
T ss_pred CcEEEEEEcCcE-EEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-
Confidence 345666666788 88999999999999999988775321111 12244566654 2 2 246 445888887654
Q ss_pred CCEEEEec
Q 044874 255 GDTIEIFN 262 (269)
Q Consensus 255 ~~~i~l~~ 262 (269)
-..+-++.
T Consensus 96 ~piLklve 103 (108)
T 2v1y_A 96 QPFLKVIE 103 (108)
T ss_dssp SSEEEEEC
T ss_pred ceEEEEEe
Confidence 34444443
No 362
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=27.12 E-value=1.1e+02 Score=25.13 Aligned_cols=38 Identities=5% Similarity=-0.055 Sum_probs=31.5
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK 40 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~ 40 (269)
|.|-..+|.+.++.|++..|..++-+.+..+.+++.+.
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 34445678899999999999999999999999976543
No 363
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=26.86 E-value=58 Score=20.22 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.6
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCc
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDG 231 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~ 231 (269)
..||.+||+.+..+ |++...
T Consensus 12 klkV~eLK~~L~~r------GL~~~G 31 (55)
T 2do1_A 12 KLKLAELKQECLAR------GLETKG 31 (55)
T ss_dssp TSCHHHHHHHHHHH------TCCCCS
T ss_pred HCcHHHHHHHHHHc------CCCCCC
Confidence 67999999999997 788653
No 364
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=25.53 E-value=55 Score=21.78 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=16.9
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCc
Q 044874 206 SDNVSELRKELQKLHQRYHFHLPQDG 231 (269)
Q Consensus 206 ~~tV~~lK~~i~~~~~~~~~~~p~~~ 231 (269)
..||.+||+.+..+ |++...
T Consensus 28 klkVaeLK~eLk~R------GL~~sG 47 (75)
T 2kvu_A 28 DMKVAELKQELKLR------SLPVSG 47 (75)
T ss_dssp TSCHHHHHHHHHHT------TCCCCS
T ss_pred HCcHHHHHHHHHHc------CCCCCC
Confidence 67999999999997 788753
No 365
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=24.10 E-value=97 Score=22.00 Aligned_cols=45 Identities=13% Similarity=-0.066 Sum_probs=32.3
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCcE-EEEEcCEEcCCCCccccC
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPKQ-TLVFNGQVLQDDRDVEHC 59 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~q-~L~~~G~~L~d~~tL~~~ 59 (269)
+-|+.+.|+++|..-|....++++++- -|+.++.....+.++++.
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 467778999999999999999988764 444455434556666543
No 366
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=23.88 E-value=88 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=25.7
Q ss_pred EEEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCC
Q 044874 2 DVIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIP 37 (269)
Q Consensus 2 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~ 37 (269)
+|++...+|...++++.++.|+.+.-. ..|++
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~----~~gi~ 33 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR----DAGID 33 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH----HTTCT
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH----HcCCC
Confidence 688888999999999999999987543 34555
No 367
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=23.78 E-value=1.4e+02 Score=25.00 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=43.4
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCc-EEEE--Ec----CEEcCCCCcccc----CCCCCCCEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPK-QTLV--FN----GQVLQDDRDVEH----CEILQNSRIQL 69 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~-q~L~--~~----G~~L~d~~tL~~----~~i~~~~~i~l 69 (269)
|.|-..+|...+|.|++++|++++-+.+..+.+..... --|+ +. -+.|+|...+.+ .....+..+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f 111 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF 111 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEE
Confidence 33445678999999999999999999988887754322 2222 11 356788776654 34444444433
No 368
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=22.92 E-value=2.1e+02 Score=20.32 Aligned_cols=42 Identities=10% Similarity=-0.047 Sum_probs=36.0
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEE
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLV 44 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~ 44 (269)
|.+-..+++--.++|.+..|+.+--.++-++.++.++...++
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 62 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 62 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHceeE
Confidence 556667888888999999999999999999999988776665
No 369
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=22.26 E-value=2e+02 Score=19.97 Aligned_cols=44 Identities=11% Similarity=-0.124 Sum_probs=36.9
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN 46 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~ 46 (269)
|.+-.++++.-.++|.+..|+.+--.++.+..++.++...++-.
T Consensus 16 irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy~~ 59 (96)
T 3ny5_A 16 VRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVYRI 59 (96)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEEEC
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCChHHeEEEEc
Confidence 55666788888999999999999999999999998877666543
No 370
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=22.17 E-value=98 Score=20.92 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=24.5
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHH
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKY 33 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~ 33 (269)
+.+...+|.+|.++|+.+.-++.-|..|+..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4455678999999999998888877776654
No 371
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=21.73 E-value=1.5e+02 Score=24.54 Aligned_cols=56 Identities=13% Similarity=0.003 Sum_probs=35.9
Q ss_pred EEEEcCCCCEEEEEEcCCCCHHHHHHHHHHHhCCCCCcEEEEEc-------CEEcCCCCcccc
Q 044874 3 VIFEPQRGKAFTIEVGFFDTVLEIKEKIEKYQGIPVPKQTLVFN-------GQVLQDDRDVEH 58 (269)
Q Consensus 3 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~-------G~~L~d~~tL~~ 58 (269)
|.|-..+|...+|.|++++|+++|=+.+..+.++..+.--.++. -+.|+|...+-+
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~e 73 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVVQ 73 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHHH
Confidence 44445678999999999999999999988886653222111121 356787766644
No 372
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=21.44 E-value=1.8e+02 Score=24.04 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=34.4
Q ss_pred eeEEEEecCCCeEEEEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEec-------CeeecCCCcc
Q 044874 186 LKLLVLTQCGNKRIPVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIYK-------QNVMDDDRSF 247 (269)
Q Consensus 186 ~~i~V~~~~g~~~~~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~-------g~~L~d~~tL 247 (269)
.-|.|-..+| ....|.|++.+|+.+|=+.+.++. +++.+.-+-+|. -|.|+|...+
T Consensus 9 ~ivkv~~~d~-ss~~l~V~~~mta~ev~~~l~~k~-----~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 9 QDVKVFSEDG-TSKVVEILADMTARDLCQLLVYKS-----HSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp EEEEEEETTS-CEEEEEECTTCBHHHHHHHHHCCC------------EEEEEEETTTTEEEECCTTSBH
T ss_pred eEEEEEecCC-cEEEEEECCCCCHHHHHHHHHHhc-----CCCCCCCEEEEEECCCcccccccccchhH
Confidence 3445555666 889999999999999998888864 444333333332 4566665544
No 373
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=21.08 E-value=1.2e+02 Score=21.86 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=39.0
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE-cCEEcCCCCccccC---CCCCCCEEEEEEec
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF-NGQVLQDDRDVEHC---EILQNSRIQLLVAS 73 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~~---~i~~~~~i~l~~~~ 73 (269)
+-|+.+.|+++|..-|..+..+++++--.+| ++.....+.++++. --..+..+++....
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 4577889999999999999999887643444 55433556666543 11235567666554
No 374
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=20.65 E-value=1e+02 Score=20.94 Aligned_cols=50 Identities=24% Similarity=0.235 Sum_probs=34.1
Q ss_pred cHHHHHHHHHHhhhccCCCCCCCceEEEecCeeecCCCccccccCCCCCEEEEecCcccCC
Q 044874 208 NVSELRKELQKLHQRYHFHLPQDGYFFIYKQNVMDDDRSFRWHHVGQGDTIEIFNGSVTGG 268 (269)
Q Consensus 208 tV~~lK~~i~~~~~~~~~~~p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~~~~~~~ 268 (269)
+-++.++.++.. ++..++ --+++..|--...+|.+.||++-+.+.+-++|
T Consensus 24 s~eE~~~ll~~y------~i~~~q-----LP~I~~~DPva~~~g~k~GdVvkI~R~S~tag 73 (84)
T 4ayb_H 24 SIDEAYKILKEL------GIRPEQ-----LPWIRASDPVARSINAKPGDIIRIIRKSQLYG 73 (84)
T ss_dssp CHHHHHHHHHHH------TCCGGG-----SCCEESSSHHHHHHTCCTTCEEEEEEEETTTE
T ss_pred CHHHHHHHHHHh------cCCHhH-----CCeecccCHhHHhhCCCCCCEEEEEEcCCCCC
Confidence 445555555443 565444 25667777778899999999999997666554
No 375
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.62 E-value=2.1e+02 Score=19.51 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=36.7
Q ss_pred EEEecCCCcHHHHHHHHHHhhhccCCCCCCCceEEEe-cCeee-cCCCcc----ccccCCCCCEEEEe
Q 044874 200 PVEVNASDNVSELRKELQKLHQRYHFHLPQDGYFFIY-KQNVM-DDDRSF----RWHHVGQGDTIEIF 261 (269)
Q Consensus 200 ~l~v~~~~tV~~lK~~i~~~~~~~~~~~p~~~q~l~~-~g~~L-~d~~tL----~~~~i~~~~~i~l~ 261 (269)
...|+.+.||+.+..-|+.+ +.+++++-.++| ++..+ ..+.++ ++|+ ++..++|.
T Consensus 23 KflVp~~~tv~~~~~~lRkr-----L~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv~ 83 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKF-----LKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVLH 83 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHH-----TTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHH-----hCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEEEE
Confidence 46788999999999999887 488877755555 55443 334443 3455 55666664
No 376
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.59 E-value=2.1e+02 Score=19.61 Aligned_cols=57 Identities=7% Similarity=0.033 Sum_probs=37.3
Q ss_pred eecCCcchHHHHHHhhhhhcCCCCcceEEEe--CCeeeccCCcccccCCCCCCEEEEEEccC
Q 044874 111 LDMDVNDTVLRLKEKIHEMESIPVNRLLVQS--SGAELQDHRSLRDCELMDNAEIDVHVRPS 170 (269)
Q Consensus 111 ~~v~~~~TV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~~~L~~y~i~~~~~i~l~~~~~ 170 (269)
.......+..+|+.+.+++++++....+|.. .|.+++|+.=+. --...|+.+++...
T Consensus 22 k~GV~A~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~---tLp~nT~lmvL~~g 80 (91)
T 2eel_A 22 RRGVMASSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQ---TLGDNTHFMILEKG 80 (91)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHT---TSCSSEEEEEEETT
T ss_pred EEeEEcCCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhh---hCCCCCEEEEEcCC
Confidence 3445678999999999999999866666654 577776542211 12245666665544
No 377
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=20.37 E-value=1.6e+02 Score=21.25 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=38.0
Q ss_pred EEEcCCCCHHHHHHHHHHHhCCCCCcEEEEE-cCEEcCCCCccccC---CCCCCCEEEEEEe
Q 044874 15 IEVGFFDTVLEIKEKIEKYQGIPVPKQTLVF-NGQVLQDDRDVEHC---EILQNSRIQLLVA 72 (269)
Q Consensus 15 l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~-~G~~L~d~~tL~~~---~i~~~~~i~l~~~ 72 (269)
+-|+.+.||++|...|.....+++++--.+| ++.....+.++++. --.++..+++...
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 4588999999999999999999876644444 55433455665442 1123445655544
Done!