BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044877
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus GN=CYPRO4 PE=2 SV=1
Length = 501
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 190/241 (78%), Positives = 222/241 (92%), Gaps = 1/241 (0%)
Query: 1 MRDKNGIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS 60
MRD+ G+VQN+A++ +PVL+W+QGHQFSRGTNFQ FA+TGDGSIVVGSLDGKIRLYS+ S
Sbjct: 252 MRDRRGMVQNIAHSDSPVLHWTQGHQFSRGTNFQSFATTGDGSIVVGSLDGKIRLYSTTS 311
Query: 61 MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNK 120
MR AKTAFPGLGSPI +VDVTYDG+WILGTTDTYLILIC+LFTDK+G TKTGF+GRMGNK
Sbjct: 312 MRMAKTAFPGLGSPITHVDVTYDGKWILGTTDTYLILICSLFTDKDGKTKTGFSGRMGNK 371
Query: 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180
I APRLLKLTP+DSH AGVNNKFH +FSWVTE+GKQERHLVATVGKFSVIW+FQ+VKN
Sbjct: 372 IPAPRLLKLTPVDSHTAGVNNKFHGGRFSWVTESGKQERHLVATVGKFSVIWDFQRVKNS 431
Query: 181 SHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKF-AVSDLPEAPLVIATPMKVSSFSI 239
HECY+NQEGLKSCYCYK++ KD+SI++S FM+DK+ AV D PEAPLV+ATP K++SFS+
Sbjct: 432 GHECYRNQEGLKSCYCYKLMTKDESIIESLFMNDKYAAVGDSPEAPLVMATPKKITSFSM 491
Query: 240 S 240
S
Sbjct: 492 S 492
>sp|Q555V7|VID27_DICDI VID27-like protein OS=Dictyostelium discoideum GN=DDB_G0274813 PE=3
SV=1
Length = 938
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 87/169 (51%), Gaps = 23/169 (13%)
Query: 35 CFASTGDGSIVVGSLDGKIRLYSSNSMRQ----------------AKTAFPGLGSPIRYV 78
C A+TG G I G+ G+I+L+S Q ++T PG+G PI +
Sbjct: 741 CAATTGSGQIAFGTSKGEIKLFSKTQFDQNKRSVTSSDPLGAIARSRTTLPGIGDPIVGI 800
Query: 79 DVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLD-SHLA 137
DVT DG+WI+ T Y+++I D + +GF R+G + +P+ L L P D +
Sbjct: 801 DVTKDGKWIVATCKQYIMVIPASLKDGS----SGFEDRLGARRPSPKRLILKPQDIKRMG 856
Query: 138 GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQ 186
GV N F A+F+ V + + E ++ + G F + WNF+++K + YQ
Sbjct: 857 GVVN-FTPAKFNIVGDE-QSETSILTSTGSFLITWNFRKIKQNILDVYQ 903
>sp|Q1MTR3|VID27_SCHPO Vacuolar import and degradation protein 27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=vid27 PE=1 SV=1
Length = 801
Score = 80.9 bits (198), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 22 SQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT 81
Q Q++ +F A+T +G I V S G IRL+ + AKTA P LG I VDVT
Sbjct: 572 EQFKQYATKNDFSSAATTENGYIAVASNKGDIRLFDRIGV-NAKTALPALGEAIIGVDVT 630
Query: 82 YDGRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVN 140
G ++L T TY++LI T + + GF +K P+ L+L+P H+A +
Sbjct: 631 ASGDFVLATCKTYILLIDTRIKEGRYAGRLGFERNFAKDKKPKPKRLQLSP--QHIAMMQ 688
Query: 141 NK------FHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQ 186
+ F A+F+ T +E +V+++G F + WN +VK G + Y+
Sbjct: 689 RELKGGASFTPAKFN--TGIDAKETTIVSSIGPFLISWNLDRVKRGFTDSYK 738
>sp|P40157|VID27_YEAST Vacuolar import and degradation protein 27 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VID27 PE=1
SV=1
Length = 782
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91
NF +T G I +GS G I+LY +R AKTA P LG I+++ + DG+W+L T
Sbjct: 567 NFSSIGTTESGYIAIGSEKGDIKLYDRLGIR-AKTAIPSLGQAIKFITTSADGKWLLATC 625
Query: 92 DTYLILICTLFTDKNGTTKTGF-NGRMGNKIAAPRLLKLTPLDSHLAGVNN------KFH 144
++ L+L+ D GF ++ +LK+ P H A + +F
Sbjct: 626 ESTLLLMDLKIKDGKNAGNIGFLKSFPASENVKTYVLKIRP--EHSASILTYTKKPIRFT 683
Query: 145 KAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179
KA F+ T G+QE+ +V + G +++ W+ + + N
Sbjct: 684 KAYFN--TGIGQQEQTIVTSTGPYAISWSLKGILN 716
>sp|B4MA12|WUHO_DROVI tRNA (guanine-N(7)-)-methyltransferase subunit wuho OS=Drosophila
virilis GN=wuho PE=3 SV=1
Length = 397
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 32 NFQCFASTGDGSIVVGSLDGK--IRLYSSNSMRQAKTAFPG 70
N CFA T D V G+LD + +R+Y+S+ QAKT G
Sbjct: 304 NISCFALTADSIYVAGALDERLTLRVYNSSDGEQAKTVPTG 344
>sp|Q5XGI5|WDR83_XENTR WD repeat domain-containing protein 83 OS=Xenopus tropicalis
GN=wdr83 PE=2 SV=1
Length = 314
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 41 DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILI 98
D I+ GS+DG +R Y +R+ + LGSPI V + D + +L ++ D+ L L+
Sbjct: 163 DHEILAGSVDGNLRRY---DLRKGEMCADYLGSPITCVSFSQDSQCLLASSLDSTLRLL 218
>sp|Q6FVD3|HIR1_CANGA Protein HIR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=HIR1 PE=3 SV=1
Length = 840
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 21 WSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPG--------L 71
W H+ SR + DG + G LDGKIR++S +++ A G L
Sbjct: 8 WFSHHEESRDYEIYTVDVSPDGKRVATGGLDGKIRIWSVDALVSAAAGESGVDRDTHRPL 67
Query: 72 GSPIRY------VDVTYDGRWILGTTDTYLILICTLFTDKNG 107
S R+ V + DG ++ +D ++LI + + +G
Sbjct: 68 ASMSRHTGSVTCVKFSPDGNYLASGSDDRILLIWAMDEENHG 109
>sp|Q9W7F2|WDR1A_XENLA WD repeat-containing protein 1-A OS=Xenopus laevis GN=wdr1-a PE=2
SV=2
Length = 607
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 40 GDGSIVVGSLDGKIRLYS--SNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97
G G++ VG DGK+ LYS NS++ P G+ + + ++DG + L TD ++
Sbjct: 456 GSGTVAVGGADGKVHLYSIQGNSLKDEGKTLPAKGA-VTDLAYSHDGAF-LAVTDANKVV 513
Query: 98 ICTLFTDKNG-TTKTGFNGRMGNKIAAPRLLKLTPLDSHLA 137
T+F+ +G + K + G ++ + +P + H A
Sbjct: 514 --TVFSVADGYSEKNSYYGHHAKALS----VAWSPDNEHFA 548
>sp|P40965|MSH4_YEAST MutS protein homolog 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MSH4 PE=1 SV=2
Length = 878
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 144 HKAQFSWVTENGKQERHLVATVGKFSVIWNFQ-----QVKNGSHECYQNQEGLKSCYCY- 197
HK Q TE L TV K + + F +++ GS +C+ +Q+GL + Y
Sbjct: 148 HKLQIYQPTEILIPSSSLAPTVSKLATMIKFNVAETVKIEEGSRKCFNSQDGLAAITKYL 207
Query: 198 ----KIVLKDDSIVDSRF 211
K LK + I+D F
Sbjct: 208 MDDTKKDLKIEEIIDKTF 225
>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1
Length = 370
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 41 DGSIVV-GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91
DGS+VV SLDG IRL+ + + KT F P+ + T + +++L T
Sbjct: 178 DGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDSPPVSFAAFTPNAKYVLCNT 229
>sp|Q9NR16|C163B_HUMAN Scavenger receptor cysteine-rich type 1 protein M160 OS=Homo
sapiens GN=CD163L1 PE=1 SV=2
Length = 1453
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 151 VTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCY 195
VT +GK V+ G S +W Q + GSH CY ++ +CY
Sbjct: 104 VTRHGKIWLDDVSCYGNESALWECQHREWGSHNCYHGEDVGVNCY 148
>sp|O43071|PRP17_SCHPO Pre-mRNA-processing factor 17 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp17 PE=1 SV=1
Length = 558
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 18 VLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRY 77
+ W +GH ++G + F ++ GS+D +I+++ R F G PIR
Sbjct: 259 IFTW-KGH--TKGISCLRFFPISGHLLLSGSMDNQIKIWEVYHDRSLLRTFQGHARPIRD 315
Query: 78 VDVTYDGRWILGTT 91
+ + DGR L T+
Sbjct: 316 LSFSQDGRSFLSTS 329
>sp|P57024|LOLB_NEIMB Outer-membrane lipoprotein LolB OS=Neisseria meningitidis serogroup
B (strain MC58) GN=lolB PE=3 SV=1
Length = 193
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 41 DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97
DG++ V DGK +Y + S + G PI+Y+ + DGR + G Y IL
Sbjct: 84 DGALAV---DGKGNVYQAESAEELSRQLVGFKLPIQYLHIWADGRRVAGA--PYRIL 135
>sp|P57023|LOLB_NEIMA Outer-membrane lipoprotein LolB OS=Neisseria meningitidis serogroup
A / serotype 4A (strain Z2491) GN=lolB PE=3 SV=1
Length = 193
Score = 31.2 bits (69), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 41 DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97
DG++ V DGK +Y + S + G PI+Y+ + DGR + G Y IL
Sbjct: 84 DGALAV---DGKGNVYQAESAEELSRQLVGFKLPIQYLHIWADGRPVAGA--PYRIL 135
>sp|Q6PAX7|WDR1B_XENLA WD repeat-containing protein 1-B OS=Xenopus laevis GN=wdr1-b PE=2
SV=1
Length = 607
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 40 GDGSIVVGSLDGKIRLYS--SNSMRQAKTAFPGLGSPIRYVDVTY--DGRWILGTTDTYL 95
G G++ VG DGK+ LYS NS++ P G+ D+ Y DG + L TD
Sbjct: 456 GSGTVSVGGADGKVHLYSIQGNSLKDEGKTLPAKGA---VTDLAYSPDGAF-LAVTDANK 511
Query: 96 ILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLA 137
++ T+F+ +G ++ N G+ A + +P + H A
Sbjct: 512 VV--TVFSVADGYSE--HNSYYGHHAKALS-VAWSPDNEHFA 548
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,258,410
Number of Sequences: 539616
Number of extensions: 4172585
Number of successful extensions: 7268
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 7249
Number of HSP's gapped (non-prelim): 29
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)