Query 044877
Match_columns 244
No_of_seqs 155 out of 186
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2395 Protein involved in va 100.0 1.8E-66 3.8E-71 501.2 18.0 229 8-243 413-644 (644)
2 PF08553 VID27: VID27 cytoplas 100.0 1.8E-65 4E-70 516.8 18.8 202 18-241 565-771 (794)
3 COG5167 VID27 Protein involved 100.0 5.7E-59 1.2E-63 449.1 12.8 201 19-241 551-756 (776)
4 KOG0265 U5 snRNP-specific prot 99.6 8.7E-15 1.9E-19 135.2 9.7 134 16-176 155-297 (338)
5 KOG0316 Conserved WD40 repeat- 99.4 9.7E-13 2.1E-17 119.2 10.1 114 31-178 146-260 (307)
6 KOG0263 Transcription initiati 99.3 1.5E-11 3.2E-16 123.7 11.1 133 15-180 514-654 (707)
7 KOG0266 WD40 repeat-containing 99.2 2.4E-10 5.2E-15 109.7 13.2 119 31-180 247-369 (456)
8 KOG0266 WD40 repeat-containing 99.1 3E-09 6.6E-14 102.1 15.9 116 30-178 203-321 (456)
9 KOG0283 WD40 repeat-containing 99.0 5.6E-09 1.2E-13 105.8 13.0 178 15-204 389-600 (712)
10 KOG0271 Notchless-like WD40 re 98.9 5.2E-09 1.1E-13 100.0 10.1 119 30-176 115-236 (480)
11 KOG0291 WD40-repeat-containing 98.9 9.1E-09 2E-13 104.4 12.2 173 31-238 351-548 (893)
12 cd00200 WD40 WD40 domain, foun 98.9 4E-08 8.6E-13 79.8 13.1 113 31-176 94-208 (289)
13 PTZ00421 coronin; Provisional 98.9 3E-08 6.5E-13 97.1 13.9 115 30-176 75-199 (493)
14 KOG0286 G-protein beta subunit 98.9 1.9E-08 4.2E-13 93.5 11.5 112 30-173 229-343 (343)
15 PTZ00420 coronin; Provisional 98.8 6E-08 1.3E-12 96.8 14.4 70 30-101 125-197 (568)
16 cd00200 WD40 WD40 domain, foun 98.8 1E-07 2.2E-12 77.4 13.2 110 31-173 178-289 (289)
17 KOG0264 Nucleosome remodeling 98.8 4E-08 8.6E-13 94.5 12.4 137 29-183 271-412 (422)
18 PTZ00420 coronin; Provisional 98.8 5.9E-08 1.3E-12 96.9 13.9 114 30-176 74-198 (568)
19 KOG0279 G protein beta subunit 98.8 4.1E-08 8.9E-13 90.7 11.3 116 33-178 66-183 (315)
20 PTZ00421 coronin; Provisional 98.8 7.2E-08 1.6E-12 94.5 13.7 71 30-101 125-198 (493)
21 KOG0271 Notchless-like WD40 re 98.8 4.9E-08 1.1E-12 93.5 11.1 121 28-181 154-287 (480)
22 KOG0272 U4/U6 small nuclear ri 98.8 4.9E-08 1.1E-12 93.9 10.3 110 31-173 346-458 (459)
23 KOG0272 U4/U6 small nuclear ri 98.7 3.1E-08 6.7E-13 95.3 8.8 120 32-183 305-431 (459)
24 KOG0279 G protein beta subunit 98.7 1.9E-07 4E-12 86.4 12.2 112 30-176 148-263 (315)
25 KOG0318 WD40 repeat stress pro 98.7 1.5E-07 3.3E-12 92.7 11.9 122 23-177 434-562 (603)
26 KOG0288 WD40 repeat protein Ti 98.7 8.5E-08 1.8E-12 92.2 9.2 132 14-176 281-418 (459)
27 KOG1007 WD repeat protein TSSC 98.7 1.8E-07 3.9E-12 87.3 10.5 119 30-178 170-292 (370)
28 KOG0289 mRNA splicing factor [ 98.6 8.3E-08 1.8E-12 92.9 8.4 72 29-101 346-419 (506)
29 PLN00181 protein SPA1-RELATED; 98.6 4.7E-07 1E-11 92.0 14.3 114 30-176 532-649 (793)
30 KOG0282 mRNA splicing factor [ 98.6 3.7E-08 8.1E-13 95.8 5.9 155 25-196 208-390 (503)
31 KOG0275 Conserved WD40 repeat- 98.6 6.5E-08 1.4E-12 91.5 6.2 113 32-176 265-379 (508)
32 KOG1446 Histone H3 (Lys4) meth 98.6 2.5E-06 5.5E-11 79.5 15.7 152 29-234 13-210 (311)
33 PLN00181 protein SPA1-RELATED; 98.6 8.9E-07 1.9E-11 90.0 13.9 120 29-175 616-738 (793)
34 KOG0315 G-protein beta subunit 98.6 8.2E-07 1.8E-11 81.5 11.8 114 30-176 83-198 (311)
35 KOG0318 WD40 repeat stress pro 98.5 6.8E-07 1.5E-11 88.2 11.8 136 32-175 61-220 (603)
36 KOG0315 G-protein beta subunit 98.5 9.4E-07 2E-11 81.1 11.9 133 24-182 118-252 (311)
37 KOG0263 Transcription initiati 98.5 5.7E-07 1.2E-11 91.2 11.0 73 30-103 577-651 (707)
38 KOG1273 WD40 repeat protein [G 98.5 2.3E-07 5.1E-12 87.3 7.1 69 33-102 26-96 (405)
39 KOG0296 Angio-associated migra 98.5 1.6E-06 3.5E-11 82.5 12.4 132 30-176 64-221 (399)
40 KOG0273 Beta-transducin family 98.5 1.4E-06 3E-11 85.1 12.1 140 25-176 230-390 (524)
41 KOG1539 WD repeat protein [Gen 98.5 1.4E-06 3.1E-11 89.4 12.4 123 25-181 488-654 (910)
42 KOG1446 Histone H3 (Lys4) meth 98.4 2.9E-06 6.3E-11 79.1 12.2 109 35-175 145-262 (311)
43 KOG0640 mRNA cleavage stimulat 98.4 4.8E-07 1E-11 85.2 7.1 118 33-182 264-390 (430)
44 KOG0278 Serine/threonine kinas 98.4 2E-06 4.3E-11 79.3 10.8 127 33-176 147-298 (334)
45 KOG0772 Uncharacterized conser 98.4 8.3E-07 1.8E-11 87.6 8.8 150 16-196 246-411 (641)
46 KOG1036 Mitotic spindle checkp 98.4 3.2E-06 6.9E-11 78.9 12.0 117 26-179 50-167 (323)
47 KOG0310 Conserved WD40 repeat- 98.4 2.6E-06 5.7E-11 83.1 11.6 109 33-174 156-267 (487)
48 KOG0293 WD40 repeat-containing 98.4 3.7E-06 7.9E-11 81.5 12.3 123 28-181 222-348 (519)
49 KOG0284 Polyadenylation factor 98.4 1.5E-06 3.3E-11 83.7 9.4 116 28-176 178-295 (464)
50 KOG0286 G-protein beta subunit 98.3 4.1E-06 8.8E-11 78.2 11.0 68 33-101 148-217 (343)
51 KOG0293 WD40 repeat-containing 98.3 3.4E-06 7.3E-11 81.7 10.8 124 26-182 350-482 (519)
52 KOG0282 mRNA splicing factor [ 98.3 2.3E-06 5E-11 83.6 9.5 142 26-180 295-467 (503)
53 KOG0291 WD40-repeat-containing 98.3 7.6E-06 1.7E-10 83.7 13.4 127 20-179 423-554 (893)
54 KOG0771 Prolactin regulatory e 98.3 1.9E-06 4E-11 82.7 8.6 67 34-101 148-215 (398)
55 KOG1063 RNA polymerase II elon 98.3 4.9E-06 1.1E-10 84.2 11.3 129 19-177 513-650 (764)
56 KOG0772 Uncharacterized conser 98.3 1.2E-06 2.6E-11 86.5 6.8 73 28-102 315-395 (641)
57 KOG0295 WD40 repeat-containing 98.3 4.9E-06 1.1E-10 79.3 10.3 97 44-173 307-404 (406)
58 KOG0285 Pleiotropic regulator 98.3 9.4E-06 2E-10 77.7 11.5 130 33-176 154-308 (460)
59 KOG0306 WD40-repeat-containing 98.3 5.7E-06 1.2E-10 84.5 10.6 116 28-176 63-180 (888)
60 KOG0265 U5 snRNP-specific prot 98.2 1.5E-05 3.2E-10 74.6 12.0 152 30-184 47-218 (338)
61 KOG0319 WD40-repeat-containing 98.2 1.1E-05 2.3E-10 82.1 10.8 116 28-176 461-578 (775)
62 KOG0285 Pleiotropic regulator 98.2 1.5E-05 3.2E-10 76.3 11.1 135 32-176 237-390 (460)
63 KOG0284 Polyadenylation factor 98.2 6.5E-06 1.4E-10 79.4 8.2 116 30-178 96-213 (464)
64 KOG0264 Nucleosome remodeling 98.1 1.2E-05 2.6E-10 77.7 9.8 117 33-181 230-353 (422)
65 KOG0292 Vesicle coat complex C 98.1 1.7E-05 3.8E-10 82.4 11.4 121 31-184 52-174 (1202)
66 KOG2111 Uncharacterized conser 98.1 1E-05 2.2E-10 76.1 8.7 75 28-102 179-257 (346)
67 KOG0288 WD40 repeat protein Ti 98.1 3.9E-06 8.5E-11 80.9 5.7 169 35-243 180-353 (459)
68 KOG2106 Uncharacterized conser 98.1 9.2E-06 2E-10 80.2 8.2 70 30-99 447-519 (626)
69 KOG1539 WD repeat protein [Gen 98.1 7.5E-06 1.6E-10 84.3 7.2 68 29-100 575-647 (910)
70 KOG0647 mRNA export protein (c 98.1 3E-05 6.5E-10 72.7 10.6 114 25-175 67-184 (347)
71 KOG1963 WD40 repeat protein [G 98.1 1.1E-05 2.3E-10 83.0 8.2 68 33-100 208-321 (792)
72 KOG0277 Peroxisomal targeting 98.0 3.8E-05 8.3E-10 70.9 10.3 130 15-177 47-180 (311)
73 KOG0300 WD40 repeat-containing 98.0 4.3E-05 9.4E-10 72.6 10.9 106 41-179 283-390 (481)
74 KOG0640 mRNA cleavage stimulat 98.0 2.8E-05 6.1E-10 73.5 9.6 118 27-174 169-290 (430)
75 KOG0281 Beta-TrCP (transducin 98.0 1.2E-05 2.6E-10 76.9 6.9 117 35-180 362-482 (499)
76 KOG2096 WD40 repeat protein [G 98.0 9.2E-05 2E-09 70.3 12.4 132 29-184 85-226 (420)
77 KOG2110 Uncharacterized conser 98.0 0.00011 2.3E-09 70.4 12.8 72 28-99 171-246 (391)
78 KOG0646 WD40 repeat protein [G 98.0 7.8E-05 1.7E-09 72.8 12.0 124 31-176 82-207 (476)
79 KOG4328 WD40 protein [Function 98.0 1.3E-05 2.8E-10 78.1 6.7 69 32-101 324-399 (498)
80 KOG2096 WD40 repeat protein [G 98.0 8.5E-05 1.8E-09 70.5 11.6 147 17-190 173-323 (420)
81 KOG0308 Conserved WD40 repeat- 98.0 7.2E-05 1.6E-09 75.6 11.6 132 13-176 92-244 (735)
82 KOG0294 WD40 repeat-containing 98.0 0.00011 2.5E-09 69.2 12.2 79 33-118 86-168 (362)
83 KOG0276 Vesicle coat complex C 98.0 0.00017 3.6E-09 73.0 14.1 141 21-198 130-276 (794)
84 KOG1274 WD40 repeat protein [G 98.0 9.1E-05 2E-09 77.0 12.5 118 27-176 10-169 (933)
85 KOG0645 WD40 repeat protein [G 98.0 0.00015 3.2E-09 67.4 12.6 114 32-175 16-135 (312)
86 KOG0313 Microtubule binding pr 97.9 0.00012 2.5E-09 70.4 12.2 133 31-209 261-395 (423)
87 KOG0276 Vesicle coat complex C 97.9 5.5E-05 1.2E-09 76.4 10.4 117 29-176 54-172 (794)
88 KOG0281 Beta-TrCP (transducin 97.9 2.1E-05 4.5E-10 75.3 6.8 111 34-182 324-435 (499)
89 KOG0310 Conserved WD40 repeat- 97.9 0.00014 3E-09 71.3 12.4 134 3-175 87-225 (487)
90 KOG0273 Beta-transducin family 97.9 9.8E-05 2.1E-09 72.5 11.0 113 31-176 360-483 (524)
91 PF08662 eIF2A: Eukaryotic tra 97.9 0.00037 7.9E-09 60.1 13.4 67 31-101 60-133 (194)
92 KOG0973 Histone transcription 97.9 0.00011 2.4E-09 77.0 11.3 84 17-101 115-201 (942)
93 KOG4328 WD40 protein [Function 97.9 0.00011 2.5E-09 71.7 10.7 115 33-175 282-399 (498)
94 KOG0308 Conserved WD40 repeat- 97.9 4E-05 8.6E-10 77.5 7.6 73 28-101 169-243 (735)
95 TIGR03866 PQQ_ABC_repeats PQQ- 97.8 0.00041 8.9E-09 59.1 12.8 67 32-100 74-144 (300)
96 KOG0274 Cdc4 and related F-box 97.8 0.00013 2.9E-09 72.6 11.1 99 43-177 303-402 (537)
97 TIGR03866 PQQ_ABC_repeats PQQ- 97.8 0.0005 1.1E-08 58.6 13.2 67 33-101 33-103 (300)
98 PF08662 eIF2A: Eukaryotic tra 97.8 9.2E-05 2E-09 63.8 8.4 67 31-100 101-178 (194)
99 KOG0319 WD40-repeat-containing 97.8 9.9E-05 2.2E-09 75.3 9.8 118 30-179 105-226 (775)
100 KOG0294 WD40 repeat-containing 97.8 0.00046 1E-08 65.2 13.5 69 31-101 44-115 (362)
101 KOG0299 U3 snoRNP-associated p 97.8 0.0002 4.4E-09 69.9 11.2 150 4-190 115-288 (479)
102 KOG0302 Ribosome Assembly prot 97.8 0.00012 2.6E-09 70.4 9.6 112 40-179 269-382 (440)
103 KOG1408 WD40 repeat protein [F 97.8 0.00027 5.8E-09 72.7 12.4 125 18-175 584-713 (1080)
104 KOG0643 Translation initiation 97.8 0.00035 7.5E-09 65.0 12.0 117 33-176 55-178 (327)
105 KOG0274 Cdc4 and related F-box 97.8 0.00012 2.7E-09 72.9 9.3 111 29-176 330-442 (537)
106 KOG1274 WD40 repeat protein [G 97.8 0.00033 7.2E-09 72.9 12.6 141 31-177 97-264 (933)
107 KOG0278 Serine/threonine kinas 97.7 0.00011 2.3E-09 68.0 8.0 80 24-103 218-299 (334)
108 KOG0313 Microtubule binding pr 97.7 0.00012 2.5E-09 70.4 8.5 110 33-173 108-221 (423)
109 KOG1407 WD40 repeat protein [F 97.7 9.4E-05 2E-09 68.5 7.4 90 6-100 169-260 (313)
110 KOG0650 WD40 repeat nucleolar 97.7 0.00061 1.3E-08 68.8 13.2 71 32-104 402-475 (733)
111 KOG1188 WD40 repeat protein [G 97.7 0.00041 8.9E-09 66.0 11.1 106 41-176 83-197 (376)
112 KOG0277 Peroxisomal targeting 97.7 0.00044 9.4E-09 64.0 10.9 116 32-179 106-225 (311)
113 KOG0647 mRNA export protein (c 97.6 0.00043 9.2E-09 65.1 10.5 122 23-176 16-146 (347)
114 KOG0296 Angio-associated migra 97.6 0.00017 3.7E-09 69.0 7.7 67 33-100 330-397 (399)
115 KOG1034 Transcriptional repres 97.6 0.00019 4E-09 68.2 7.9 140 33-180 138-284 (385)
116 PF00400 WD40: WD domain, G-be 97.6 9.3E-05 2E-09 46.7 4.1 33 67-99 6-39 (39)
117 KOG0295 WD40 repeat-containing 97.6 0.00038 8.1E-09 66.7 9.9 145 14-176 170-323 (406)
118 KOG0275 Conserved WD40 repeat- 97.6 0.00053 1.1E-08 65.5 10.8 96 33-134 309-408 (508)
119 KOG0289 mRNA splicing factor [ 97.6 0.00018 3.9E-09 70.2 7.7 88 12-100 365-459 (506)
120 KOG1445 Tumor-specific antigen 97.6 0.00015 3.3E-09 73.7 7.3 72 29-101 676-750 (1012)
121 KOG1034 Transcriptional repres 97.6 0.00045 9.7E-09 65.6 9.8 112 43-184 107-222 (385)
122 KOG0321 WD40 repeat-containing 97.6 0.00055 1.2E-08 69.4 10.7 113 36-177 224-349 (720)
123 KOG0268 Sof1-like rRNA process 97.6 0.00018 3.9E-09 69.0 7.0 69 30-100 66-136 (433)
124 KOG0270 WD40 repeat-containing 97.6 0.00051 1.1E-08 67.0 10.1 58 44-102 259-318 (463)
125 KOG0267 Microtubule severing p 97.6 0.00011 2.4E-09 75.1 5.8 72 30-102 112-185 (825)
126 KOG0306 WD40-repeat-containing 97.6 0.00073 1.6E-08 69.6 11.6 77 27-104 505-583 (888)
127 KOG0643 Translation initiation 97.6 0.0002 4.4E-09 66.6 6.9 72 30-101 147-220 (327)
128 KOG0301 Phospholipase A2-activ 97.5 0.0011 2.4E-08 67.6 12.5 66 31-99 102-167 (745)
129 COG2319 FOG: WD40 repeat [Gene 97.5 0.0029 6.3E-08 53.0 13.2 70 31-101 156-229 (466)
130 KOG0641 WD40 repeat protein [G 97.5 0.0014 3.1E-08 60.2 12.0 113 32-174 233-348 (350)
131 KOG0645 WD40 repeat protein [G 97.5 0.0015 3.3E-08 60.8 12.3 69 31-101 62-135 (312)
132 KOG0316 Conserved WD40 repeat- 97.5 0.00095 2.1E-08 61.4 10.7 111 32-175 19-131 (307)
133 KOG0299 U3 snoRNP-associated p 97.5 0.0008 1.7E-08 65.8 10.8 131 32-178 204-359 (479)
134 KOG0771 Prolactin regulatory e 97.5 0.00021 4.6E-09 68.8 6.6 82 18-101 271-354 (398)
135 KOG4283 Transcription-coupled 97.5 0.0005 1.1E-08 64.9 8.7 114 44-176 161-277 (397)
136 KOG0973 Histone transcription 97.5 0.00072 1.6E-08 71.1 10.6 112 33-176 72-202 (942)
137 KOG4283 Transcription-coupled 97.5 0.00021 4.5E-09 67.4 5.7 71 31-101 189-276 (397)
138 KOG0283 WD40 repeat-containing 97.4 0.0007 1.5E-08 69.4 9.7 124 19-175 256-440 (712)
139 PF02239 Cytochrom_D1: Cytochr 97.4 0.00031 6.7E-09 66.5 6.8 67 33-101 39-108 (369)
140 KOG0302 Ribosome Assembly prot 97.4 0.00076 1.6E-08 65.0 9.3 71 32-102 304-379 (440)
141 KOG0292 Vesicle coat complex C 97.4 0.00069 1.5E-08 71.0 9.5 111 33-176 12-124 (1202)
142 KOG0649 WD40 repeat protein [G 97.4 0.0015 3.3E-08 60.4 10.6 74 26-101 151-235 (325)
143 PF00400 WD40: WD domain, G-be 97.4 0.00024 5.3E-09 44.8 4.0 29 29-57 10-39 (39)
144 KOG0267 Microtubule severing p 97.4 0.00017 3.6E-09 73.8 4.7 99 26-133 66-166 (825)
145 COG2319 FOG: WD40 repeat [Gene 97.3 0.011 2.3E-07 49.5 13.9 73 29-102 197-272 (466)
146 KOG0641 WD40 repeat protein [G 97.3 0.0049 1.1E-07 56.7 12.5 135 41-219 193-335 (350)
147 KOG0269 WD40 repeat-containing 97.3 0.00049 1.1E-08 70.8 6.6 74 28-102 218-297 (839)
148 KOG0642 Cell-cycle nuclear pro 97.3 0.0017 3.7E-08 64.9 10.1 75 27-101 341-426 (577)
149 KOG2395 Protein involved in va 97.3 7.3E-05 1.6E-09 74.5 0.5 42 193-241 579-620 (644)
150 KOG0269 WD40 repeat-containing 97.2 0.00095 2.1E-08 68.8 8.1 116 33-180 136-255 (839)
151 KOG0301 Phospholipase A2-activ 97.2 0.0035 7.5E-08 64.1 11.5 102 32-170 142-243 (745)
152 KOG1408 WD40 repeat protein [F 97.2 0.0023 4.9E-08 66.1 10.2 148 6-183 435-587 (1080)
153 KOG3881 Uncharacterized conser 97.2 0.00093 2E-08 64.4 7.0 72 30-101 247-320 (412)
154 KOG2055 WD40 repeat protein [G 97.1 0.0064 1.4E-07 59.9 11.9 84 18-101 197-288 (514)
155 KOG0639 Transducin-like enhanc 97.1 0.0006 1.3E-08 67.9 4.9 69 33-102 512-582 (705)
156 KOG1036 Mitotic spindle checkp 97.1 0.00095 2E-08 62.7 5.9 60 31-91 233-293 (323)
157 KOG0307 Vesicle coat complex C 97.1 0.0023 5.1E-08 67.9 9.1 75 26-100 60-146 (1049)
158 KOG2048 WD40 repeat protein [G 97.1 0.0063 1.4E-07 62.0 11.7 115 32-176 71-185 (691)
159 PF11768 DUF3312: Protein of u 97.0 0.0024 5.2E-08 63.9 8.4 71 29-102 258-330 (545)
160 PRK11028 6-phosphogluconolacto 97.0 0.015 3.2E-07 52.5 12.6 68 33-101 82-156 (330)
161 KOG2919 Guanine nucleotide-bin 96.9 0.0048 1E-07 58.9 9.2 123 27-178 204-330 (406)
162 KOG2394 WD40 protein DMR-N9 [G 96.9 0.0019 4.2E-08 64.6 6.2 79 16-100 281-361 (636)
163 PRK02888 nitrous-oxide reducta 96.9 0.0082 1.8E-07 61.2 10.7 105 50-178 295-407 (635)
164 KOG0303 Actin-binding protein 96.8 0.0019 4E-08 62.8 5.6 68 33-102 134-204 (472)
165 KOG2919 Guanine nucleotide-bin 96.8 0.0076 1.6E-07 57.6 9.3 128 44-179 126-285 (406)
166 KOG1009 Chromatin assembly com 96.7 0.0034 7.3E-08 60.9 6.4 71 33-103 68-155 (434)
167 KOG1310 WD40 repeat protein [G 96.7 0.0046 9.9E-08 62.4 7.2 99 68-196 46-145 (758)
168 KOG0305 Anaphase promoting com 96.7 0.018 3.9E-07 57.2 11.3 111 33-177 346-463 (484)
169 KOG0305 Anaphase promoting com 96.6 0.018 3.9E-07 57.2 10.9 122 16-174 207-330 (484)
170 PRK01742 tolB translocation pr 96.6 0.022 4.7E-07 54.3 11.1 66 31-99 204-276 (429)
171 PRK11028 6-phosphogluconolacto 96.6 0.012 2.6E-07 53.1 8.5 67 34-101 129-205 (330)
172 KOG1832 HIV-1 Vpr-binding prot 96.5 0.0024 5.2E-08 67.3 4.3 83 16-101 1089-1175(1516)
173 KOG1517 Guanine nucleotide bin 96.5 0.015 3.2E-07 62.3 9.7 121 11-137 1240-1367(1387)
174 KOG1517 Guanine nucleotide bin 96.4 0.023 5E-07 60.9 10.8 127 27-182 1205-1340(1387)
175 KOG2106 Uncharacterized conser 96.4 0.032 6.9E-07 55.9 11.0 139 24-174 241-397 (626)
176 KOG0268 Sof1-like rRNA process 96.4 0.0077 1.7E-07 58.1 6.4 112 34-176 233-346 (433)
177 KOG0646 WD40 repeat protein [G 96.4 0.011 2.3E-07 58.2 7.4 125 26-183 33-161 (476)
178 KOG0639 Transducin-like enhanc 96.3 0.007 1.5E-07 60.6 5.9 107 33-174 554-662 (705)
179 KOG2055 WD40 repeat protein [G 96.3 0.019 4E-07 56.8 8.5 73 27-99 341-415 (514)
180 PRK01742 tolB translocation pr 96.3 0.034 7.4E-07 52.9 10.1 66 32-100 293-360 (429)
181 KOG3881 Uncharacterized conser 96.2 0.014 3E-07 56.5 7.3 69 33-101 205-277 (412)
182 KOG2110 Uncharacterized conser 96.2 0.034 7.5E-07 53.5 9.8 103 49-183 151-256 (391)
183 KOG0649 WD40 repeat protein [G 96.2 0.06 1.3E-06 50.1 10.9 118 31-176 115-236 (325)
184 KOG1445 Tumor-specific antigen 96.2 0.014 2.9E-07 60.0 7.3 71 31-102 129-201 (1012)
185 KOG2139 WD40 repeat protein [G 96.2 0.021 4.5E-07 55.3 8.2 74 23-98 188-265 (445)
186 KOG0300 WD40 repeat-containing 96.2 0.015 3.2E-07 55.8 7.1 67 33-100 360-427 (481)
187 KOG1063 RNA polymerase II elon 96.1 0.017 3.6E-07 59.3 7.7 137 35-177 150-299 (764)
188 KOG0642 Cell-cycle nuclear pro 96.1 0.017 3.7E-07 58.0 7.6 123 34-179 298-430 (577)
189 smart00320 WD40 WD40 repeats. 96.1 0.011 2.4E-07 33.3 4.0 28 30-57 12-40 (40)
190 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.032 7E-07 45.4 7.8 64 33-100 2-70 (111)
191 KOG0321 WD40 repeat-containing 96.1 0.019 4.2E-07 58.5 7.9 69 35-103 105-177 (720)
192 TIGR02658 TTQ_MADH_Hv methylam 96.1 0.024 5.1E-07 54.1 8.2 67 33-101 250-330 (352)
193 KOG1273 WD40 repeat protein [G 96.1 0.056 1.2E-06 51.7 10.4 56 31-88 66-122 (405)
194 PRK05137 tolB translocation pr 96.1 0.1 2.2E-06 49.6 12.2 68 31-100 202-277 (435)
195 KOG2695 WD40 repeat protein [G 96.1 0.015 3.3E-07 55.9 6.5 119 27-175 249-376 (425)
196 KOG1334 WD40 repeat protein [G 96.0 0.036 7.9E-07 55.2 9.2 152 5-175 254-424 (559)
197 KOG1272 WD40-repeat-containing 96.0 0.028 6.1E-07 55.7 8.3 138 27-212 248-388 (545)
198 KOG2048 WD40 repeat protein [G 96.0 0.029 6.3E-07 57.3 8.5 144 28-179 108-279 (691)
199 KOG0290 Conserved WD40 repeat- 95.9 0.067 1.5E-06 50.7 10.1 73 30-102 196-319 (364)
200 KOG1354 Serine/threonine prote 95.9 0.012 2.6E-07 56.6 5.0 121 34-173 217-357 (433)
201 KOG4378 Nuclear protein COP1 [ 95.9 0.04 8.7E-07 55.2 8.7 112 36-180 170-285 (673)
202 PRK02889 tolB translocation pr 95.8 0.16 3.5E-06 48.4 12.3 66 33-100 242-313 (427)
203 KOG0322 G-protein beta subunit 95.7 0.02 4.4E-07 53.5 5.6 72 28-100 248-322 (323)
204 KOG2445 Nuclear pore complex c 95.6 0.26 5.6E-06 47.0 12.7 87 16-102 97-257 (361)
205 KOG0322 G-protein beta subunit 95.6 0.043 9.3E-07 51.3 7.4 92 33-125 17-114 (323)
206 PRK02889 tolB translocation pr 95.6 0.19 4.1E-06 47.9 11.9 69 30-100 195-269 (427)
207 KOG4547 WD40 repeat-containing 95.5 0.045 9.8E-07 54.9 7.7 72 31-105 145-224 (541)
208 KOG0270 WD40 repeat-containing 95.5 0.054 1.2E-06 53.2 7.8 78 25-102 324-405 (463)
209 PRK00178 tolB translocation pr 95.4 0.32 6.9E-06 45.8 12.6 70 29-100 197-274 (430)
210 PRK03629 tolB translocation pr 95.3 0.34 7.4E-06 46.4 12.8 68 31-100 199-274 (429)
211 KOG1407 WD40 repeat protein [F 95.3 0.17 3.8E-06 47.3 10.3 116 30-178 20-139 (313)
212 PRK04922 tolB translocation pr 95.3 0.21 4.5E-06 47.6 11.1 68 31-100 204-279 (433)
213 KOG1188 WD40 repeat protein [G 95.3 0.051 1.1E-06 52.1 6.7 84 16-103 107-198 (376)
214 TIGR02800 propeller_TolB tol-p 95.2 0.29 6.3E-06 45.2 11.7 66 33-100 192-265 (417)
215 KOG2321 WD40 repeat protein [G 95.1 0.1 2.2E-06 53.1 8.7 128 19-176 160-303 (703)
216 PRK04922 tolB translocation pr 95.0 0.44 9.6E-06 45.4 12.6 57 34-92 251-311 (433)
217 KOG1240 Protein kinase contain 95.0 0.18 3.8E-06 55.0 10.5 75 27-103 1094-1227(1431)
218 KOG1523 Actin-related protein 94.9 0.25 5.4E-06 47.2 10.3 116 31-176 11-131 (361)
219 KOG4378 Nuclear protein COP1 [ 94.9 0.1 2.2E-06 52.5 7.9 71 31-101 122-195 (673)
220 TIGR02800 propeller_TolB tol-p 94.9 0.52 1.1E-05 43.6 12.3 57 34-92 237-297 (417)
221 smart00320 WD40 WD40 repeats. 94.9 0.049 1.1E-06 30.5 3.6 32 68-99 8-40 (40)
222 KOG0290 Conserved WD40 repeat- 94.8 0.27 5.9E-06 46.7 10.2 170 26-241 40-228 (364)
223 KOG2315 Predicted translation 94.6 0.11 2.4E-06 52.2 7.3 64 34-100 315-389 (566)
224 KOG4497 Uncharacterized conser 94.5 0.2 4.4E-06 48.3 8.7 117 26-175 206-391 (447)
225 KOG2321 WD40 repeat protein [G 94.5 0.073 1.6E-06 54.1 5.8 69 33-101 231-302 (703)
226 KOG0303 Actin-binding protein 94.3 0.18 4E-06 49.3 8.0 110 33-176 84-204 (472)
227 KOG1009 Chromatin assembly com 94.3 0.54 1.2E-05 46.1 11.0 128 29-176 12-154 (434)
228 KOG1587 Cytoplasmic dynein int 94.2 0.65 1.4E-05 47.0 11.9 139 17-175 223-378 (555)
229 KOG1332 Vesicle coat complex C 94.2 0.11 2.3E-06 48.3 5.8 63 38-100 19-87 (299)
230 PF02239 Cytochrom_D1: Cytochr 94.1 0.07 1.5E-06 50.7 4.8 68 34-101 272-347 (369)
231 PF12234 Rav1p_C: RAVE protein 94.1 0.85 1.9E-05 46.9 12.7 95 6-101 1-104 (631)
232 KOG1007 WD repeat protein TSSC 94.1 0.13 2.7E-06 48.9 6.3 70 33-102 217-290 (370)
233 KOG1272 WD40-repeat-containing 94.1 0.093 2E-06 52.2 5.5 88 11-102 268-363 (545)
234 KOG3914 WD repeat protein WDR4 94.1 0.29 6.2E-06 47.5 8.7 119 28-179 106-227 (390)
235 KOG0644 Uncharacterized conser 94.0 0.059 1.3E-06 56.8 4.2 69 32-101 192-262 (1113)
236 PRK03629 tolB translocation pr 93.9 0.28 6.1E-06 47.0 8.4 65 34-100 246-316 (429)
237 PRK04792 tolB translocation pr 93.8 0.82 1.8E-05 44.2 11.5 68 31-100 218-293 (448)
238 KOG2445 Nuclear pore complex c 93.8 0.25 5.4E-06 47.1 7.6 73 31-103 14-93 (361)
239 KOG3914 WD repeat protein WDR4 93.7 0.15 3.3E-06 49.4 6.2 68 33-101 154-223 (390)
240 PLN02919 haloacid dehalogenase 93.7 0.22 4.8E-06 53.6 8.1 66 34-101 807-888 (1057)
241 KOG1524 WD40 repeat-containing 93.7 0.94 2E-05 46.2 11.8 181 33-241 107-349 (737)
242 PF14727 PHTB1_N: PTHB1 N-term 93.6 1.9 4.1E-05 42.3 13.5 120 43-178 39-166 (418)
243 PF12894 Apc4_WD40: Anaphase-p 93.4 0.22 4.7E-06 34.4 4.9 34 26-59 7-41 (47)
244 KOG1240 Protein kinase contain 93.3 1.1 2.5E-05 49.1 12.4 76 24-100 1044-1127(1431)
245 COG4946 Uncharacterized protei 93.1 0.42 9.1E-06 48.1 8.3 67 31-100 362-430 (668)
246 COG4946 Uncharacterized protei 93.0 0.45 9.9E-06 47.8 8.3 69 32-101 403-477 (668)
247 KOG2394 WD40 protein DMR-N9 [G 92.9 0.61 1.3E-05 47.3 9.1 115 30-176 219-363 (636)
248 COG5170 CDC55 Serine/threonine 92.9 0.092 2E-06 50.4 3.3 69 34-102 225-310 (460)
249 PF00780 CNH: CNH domain; Int 92.7 4.8 0.0001 35.2 13.7 56 43-101 9-64 (275)
250 PF10282 Lactonase: Lactonase, 92.6 0.52 1.1E-05 43.6 7.8 73 27-100 241-321 (345)
251 KOG2139 WD40 repeat protein [G 92.6 2 4.4E-05 42.0 11.8 68 32-103 240-311 (445)
252 TIGR02658 TTQ_MADH_Hv methylam 92.6 0.6 1.3E-05 44.7 8.3 64 37-101 52-136 (352)
253 PF10282 Lactonase: Lactonase, 92.3 1.1 2.4E-05 41.5 9.6 73 28-100 189-274 (345)
254 PRK05137 tolB translocation pr 92.3 0.51 1.1E-05 44.9 7.5 65 33-99 248-320 (435)
255 KOG3621 WD40 repeat-containing 92.2 0.29 6.3E-06 50.6 5.9 92 26-135 31-122 (726)
256 KOG4714 Nucleoporin [Nuclear s 92.1 0.18 3.8E-06 47.3 4.0 69 33-101 182-254 (319)
257 KOG2079 Vacuolar assembly/sort 91.9 0.6 1.3E-05 50.5 8.1 59 41-101 99-160 (1206)
258 KOG2114 Vacuolar assembly/sort 91.8 3.4 7.3E-05 44.0 13.2 165 37-242 31-203 (933)
259 PLN02919 haloacid dehalogenase 91.7 1.3 2.7E-05 47.9 10.4 65 34-100 743-832 (1057)
260 KOG0280 Uncharacterized conser 91.4 0.93 2E-05 43.1 8.0 83 44-134 181-266 (339)
261 KOG1354 Serine/threonine prote 91.4 2 4.4E-05 41.8 10.3 154 16-178 7-196 (433)
262 KOG1332 Vesicle coat complex C 91.2 0.72 1.6E-05 43.0 6.9 58 43-100 225-285 (299)
263 PF11768 DUF3312: Protein of u 91.1 0.96 2.1E-05 45.8 8.2 93 47-174 228-328 (545)
264 KOG2111 Uncharacterized conser 91.1 1.4 3.1E-05 42.1 8.8 106 46-182 154-263 (346)
265 COG2706 3-carboxymuconate cycl 91.1 2.9 6.3E-05 40.2 11.0 109 34-173 148-262 (346)
266 PF15492 Nbas_N: Neuroblastoma 90.8 7.1 0.00015 36.7 13.0 53 31-83 44-102 (282)
267 KOG1524 WD40 repeat-containing 90.6 0.51 1.1E-05 48.0 5.8 63 32-97 188-251 (737)
268 PRK00178 tolB translocation pr 90.6 1.2 2.7E-05 41.9 8.2 57 34-92 246-306 (430)
269 PRK04792 tolB translocation pr 90.4 1.3 2.8E-05 42.8 8.3 57 34-92 265-325 (448)
270 PRK01029 tolB translocation pr 90.2 0.99 2.2E-05 43.5 7.2 66 34-100 284-358 (428)
271 KOG4227 WD40 repeat protein [G 90.1 2.1 4.5E-05 42.5 9.3 119 30-178 105-228 (609)
272 KOG0644 Uncharacterized conser 90.1 0.25 5.4E-06 52.3 3.2 79 18-101 214-300 (1113)
273 KOG0307 Vesicle coat complex C 90.0 0.65 1.4E-05 50.0 6.3 70 31-101 207-284 (1049)
274 PRK01029 tolB translocation pr 89.7 1.4 3.1E-05 42.4 7.9 66 33-100 329-402 (428)
275 KOG4547 WD40 repeat-containing 89.3 9.2 0.0002 38.9 13.3 122 24-182 99-228 (541)
276 KOG1963 WD40 repeat protein [G 89.0 0.89 1.9E-05 47.7 6.2 57 43-101 471-538 (792)
277 KOG1538 Uncharacterized conser 88.7 1.3 2.8E-05 46.3 7.1 69 33-102 15-84 (1081)
278 KOG4190 Uncharacterized conser 88.5 0.65 1.4E-05 47.6 4.8 65 37-102 743-813 (1034)
279 PF03088 Str_synth: Strictosid 88.0 0.6 1.3E-05 36.4 3.3 46 44-91 30-75 (89)
280 PF08450 SGL: SMP-30/Gluconola 87.7 17 0.00037 31.3 13.9 69 29-100 84-163 (246)
281 PF04841 Vps16_N: Vps16, N-ter 87.4 3.3 7.1E-05 39.9 8.7 76 19-100 21-108 (410)
282 KOG1587 Cytoplasmic dynein int 87.0 1.9 4.1E-05 43.8 7.0 74 27-100 437-515 (555)
283 KOG0280 Uncharacterized conser 86.8 0.84 1.8E-05 43.4 4.1 67 33-101 213-284 (339)
284 COG3391 Uncharacterized conser 86.4 2.9 6.4E-05 39.6 7.6 65 34-101 119-190 (381)
285 PF12341 DUF3639: Protein of u 86.3 1.3 2.9E-05 27.6 3.5 25 72-98 1-26 (27)
286 KOG0974 WD-repeat protein WDR6 86.3 1.6 3.5E-05 46.8 6.3 70 44-116 148-218 (967)
287 KOG1538 Uncharacterized conser 86.1 2.3 4.9E-05 44.7 7.1 89 6-101 191-293 (1081)
288 KOG0974 WD-repeat protein WDR6 85.0 2.8 6.2E-05 45.0 7.4 65 33-99 178-244 (967)
289 KOG0650 WD40 repeat nucleolar 84.8 6.5 0.00014 40.7 9.5 100 2-102 563-681 (733)
290 KOG3616 Selective LIM binding 84.3 2.1 4.5E-05 45.7 5.9 72 25-99 9-81 (1636)
291 PF04762 IKI3: IKI3 family; I 83.2 14 0.00031 39.7 11.7 67 34-100 260-332 (928)
292 KOG2066 Vacuolar assembly/sort 82.9 2.4 5.2E-05 44.7 5.7 49 33-83 74-123 (846)
293 KOG4497 Uncharacterized conser 82.9 3 6.5E-05 40.5 6.0 57 44-101 64-122 (447)
294 KOG1310 WD40 repeat protein [G 82.8 2.2 4.9E-05 43.7 5.3 60 41-102 635-697 (758)
295 PF00930 DPPIV_N: Dipeptidyl p 82.6 2 4.3E-05 39.9 4.6 51 48-100 20-70 (353)
296 PRK04043 tolB translocation pr 81.8 8.3 0.00018 37.3 8.7 72 27-100 184-264 (419)
297 KOG4532 WD40-like repeat conta 81.8 12 0.00026 35.6 9.3 66 35-101 208-282 (344)
298 KOG2444 WD40 repeat protein [G 81.7 5.3 0.00012 36.6 6.9 111 43-185 72-187 (238)
299 KOG1920 IkappaB kinase complex 80.9 29 0.00063 38.6 12.9 156 32-198 70-250 (1265)
300 KOG1064 RAVE (regulator of V-A 79.7 1.6 3.5E-05 49.8 3.4 59 33-101 2339-2398(2439)
301 COG5170 CDC55 Serine/threonine 79.5 14 0.00031 35.9 9.2 143 30-178 26-204 (460)
302 KOG3617 WD40 and TPR repeat-co 79.0 2.1 4.5E-05 46.0 3.7 97 33-132 62-160 (1416)
303 TIGR03300 assembly_YfgL outer 78.9 3.4 7.4E-05 38.0 4.8 56 41-97 320-375 (377)
304 PF08450 SGL: SMP-30/Gluconola 78.9 7.3 0.00016 33.7 6.6 57 33-91 186-244 (246)
305 TIGR02604 Piru_Ver_Nterm putat 78.9 10 0.00022 35.6 8.0 63 33-98 16-95 (367)
306 COG2706 3-carboxymuconate cycl 78.6 21 0.00045 34.6 10.0 98 30-133 88-202 (346)
307 KOG2114 Vacuolar assembly/sort 77.9 42 0.00091 36.2 12.7 70 30-101 125-201 (933)
308 KOG1523 Actin-related protein 77.3 9.9 0.00021 36.7 7.4 73 32-104 102-179 (361)
309 PF10647 Gmad1: Lipoprotein Lp 76.4 13 0.00027 33.4 7.6 63 29-91 64-130 (253)
310 KOG2079 Vacuolar assembly/sort 75.2 8.5 0.00018 42.1 7.0 71 30-102 130-204 (1206)
311 KOG2695 WD40 repeat protein [G 74.1 4.5 9.7E-05 39.5 4.3 68 34-101 302-376 (425)
312 PF08553 VID27: VID27 cytoplas 73.3 74 0.0016 34.0 13.2 169 26-231 530-714 (794)
313 PF12341 DUF3639: Protein of u 72.9 6.9 0.00015 24.4 3.5 25 32-57 3-27 (27)
314 KOG4640 Anaphase-promoting com 72.3 12 0.00025 38.9 6.9 64 36-101 26-92 (665)
315 PRK13616 lipoprotein LpqB; Pro 70.5 13 0.00029 37.9 6.9 64 30-97 396-472 (591)
316 PRK04043 tolB translocation pr 70.3 20 0.00042 34.7 7.8 57 34-92 236-296 (419)
317 PF13360 PQQ_2: PQQ-like domai 70.2 6.4 0.00014 33.0 4.0 78 18-100 14-93 (238)
318 KOG2041 WD40 repeat protein [G 69.1 13 0.00029 39.6 6.6 70 29-99 13-99 (1189)
319 PF07569 Hira: TUP1-like enhan 68.8 29 0.00064 30.7 8.0 57 43-99 24-93 (219)
320 TIGR03300 assembly_YfgL outer 68.5 13 0.00028 34.2 6.0 59 41-101 105-163 (377)
321 KOG1912 WD40 repeat protein [G 68.3 24 0.00051 37.9 8.2 57 44-101 82-143 (1062)
322 PF01011 PQQ: PQQ enzyme repea 68.2 8.8 0.00019 24.5 3.4 21 42-62 1-21 (38)
323 KOG0309 Conserved WD40 repeat- 67.5 8.2 0.00018 41.1 4.7 115 30-176 24-189 (1081)
324 KOG2444 WD40 repeat protein [G 66.8 9.7 0.00021 35.0 4.6 66 36-102 108-178 (238)
325 PF13570 PQQ_3: PQQ-like domai 66.1 6.4 0.00014 25.2 2.5 25 34-59 15-39 (40)
326 PF04841 Vps16_N: Vps16, N-ter 65.9 73 0.0016 30.7 10.7 52 44-100 193-245 (410)
327 PF13449 Phytase-like: Esteras 65.2 34 0.00074 31.7 8.0 76 18-94 71-168 (326)
328 PF11635 Med16: Mediator compl 64.5 26 0.00056 36.7 7.8 77 15-92 244-340 (753)
329 KOG2066 Vacuolar assembly/sort 64.3 24 0.00052 37.6 7.4 77 22-101 104-187 (846)
330 PF07433 DUF1513: Protein of u 63.5 15 0.00033 34.8 5.4 69 33-101 165-247 (305)
331 PF08596 Lgl_C: Lethal giant l 63.4 48 0.001 32.1 8.9 144 30-179 86-247 (395)
332 PF07433 DUF1513: Protein of u 61.8 35 0.00075 32.4 7.4 74 16-99 207-283 (305)
333 KOG1645 RING-finger-containing 61.6 24 0.00051 35.1 6.4 74 28-103 191-268 (463)
334 KOG0882 Cyclophilin-related pe 61.0 9.6 0.00021 38.4 3.7 76 25-101 4-84 (558)
335 KOG4227 WD40 repeat protein [G 60.7 12 0.00025 37.4 4.1 71 28-101 12-86 (609)
336 PF06433 Me-amine-dh_H: Methyl 60.6 7.8 0.00017 37.3 2.9 67 33-101 240-320 (342)
337 PF10168 Nup88: Nuclear pore c 60.4 1.9E+02 0.0041 30.5 13.1 98 70-176 82-180 (717)
338 PF10214 Rrn6: RNA polymerase 59.8 1.5E+02 0.0032 31.1 12.3 186 27-241 23-233 (765)
339 KOG4640 Anaphase-promoting com 59.2 19 0.0004 37.5 5.5 61 21-81 51-114 (665)
340 PF01731 Arylesterase: Arylest 59.1 27 0.00059 27.0 5.2 53 44-100 29-83 (86)
341 KOG1064 RAVE (regulator of V-A 57.8 31 0.00066 40.3 7.2 127 14-180 2239-2371(2439)
342 PF07569 Hira: TUP1-like enhan 57.2 73 0.0016 28.2 8.4 33 67-101 5-40 (219)
343 PF04053 Coatomer_WDAD: Coatom 56.0 2.1E+02 0.0046 28.2 12.5 176 18-216 20-209 (443)
344 PF04053 Coatomer_WDAD: Coatom 55.7 20 0.00044 35.3 5.0 58 42-102 117-174 (443)
345 PF14583 Pectate_lyase22: Olig 55.5 22 0.00047 34.8 5.1 58 35-92 287-370 (386)
346 PRK11138 outer membrane biogen 54.7 26 0.00057 32.7 5.4 57 41-99 335-392 (394)
347 TIGR02604 Piru_Ver_Nterm putat 54.4 26 0.00056 32.9 5.3 65 26-91 66-142 (367)
348 PF13360 PQQ_2: PQQ-like domai 53.9 30 0.00064 29.0 5.1 62 38-100 73-139 (238)
349 smart00564 PQQ beta-propeller 53.9 17 0.00038 21.7 2.8 24 39-62 4-27 (33)
350 KOG4532 WD40-like repeat conta 53.8 1.4E+02 0.003 28.7 9.8 102 43-177 130-235 (344)
351 PF11715 Nup160: Nucleoporin N 53.6 17 0.00037 35.7 4.1 26 40-65 229-254 (547)
352 PF05787 DUF839: Bacterial pro 52.4 36 0.00078 34.3 6.2 22 70-91 499-520 (524)
353 PRK02888 nitrous-oxide reducta 51.8 90 0.0019 32.6 9.0 132 34-175 324-485 (635)
354 PF06977 SdiA-regulated: SdiA- 51.5 1E+02 0.0022 28.1 8.5 69 31-100 22-93 (248)
355 PRK11138 outer membrane biogen 51.5 1.8E+02 0.0039 27.2 10.4 60 41-100 256-320 (394)
356 KOG1334 WD40 repeat protein [G 51.1 18 0.00039 36.7 3.8 66 33-100 396-465 (559)
357 PF07995 GSDH: Glucose / Sorbo 50.4 33 0.00072 31.9 5.3 58 34-91 5-71 (331)
358 COG5354 Uncharacterized protei 49.4 39 0.00085 34.5 5.8 64 36-101 321-395 (561)
359 PF11715 Nup160: Nucleoporin N 48.9 95 0.0021 30.5 8.5 79 23-101 138-248 (547)
360 PF12657 TFIIIC_delta: Transcr 48.7 85 0.0019 26.3 7.1 22 34-55 8-29 (173)
361 TIGR02276 beta_rpt_yvtn 40-res 48.5 24 0.00051 22.0 2.9 19 82-100 1-21 (42)
362 KOG2314 Translation initiation 48.2 47 0.001 34.5 6.2 73 34-114 214-299 (698)
363 KOG2314 Translation initiation 47.7 58 0.0013 33.8 6.8 65 35-100 254-333 (698)
364 PF02333 Phytase: Phytase; In 46.7 98 0.0021 30.3 8.0 69 32-101 209-290 (381)
365 PF14781 BBS2_N: Ciliary BBSom 46.2 1.2E+02 0.0025 25.8 7.4 58 43-101 12-81 (136)
366 KOG4714 Nucleoporin [Nuclear s 44.9 69 0.0015 30.5 6.4 124 35-185 94-218 (319)
367 KOG1520 Predicted alkaloid syn 44.0 60 0.0013 31.8 6.1 45 44-90 192-236 (376)
368 PF04762 IKI3: IKI3 family; I 43.8 99 0.0021 33.5 8.2 69 30-100 75-149 (928)
369 PF14761 HPS3_N: Hermansky-Pud 43.6 61 0.0013 29.4 5.7 65 34-99 21-93 (215)
370 PF14655 RAB3GAP2_N: Rab3 GTPa 43.4 40 0.00086 33.2 4.8 34 67-101 302-337 (415)
371 PF02897 Peptidase_S9_N: Proly 42.2 43 0.00093 31.3 4.7 54 35-91 128-188 (414)
372 COG0823 TolB Periplasmic compo 42.1 38 0.00083 33.1 4.5 64 35-100 242-313 (425)
373 PLN00033 photosystem II stabil 42.0 1.6E+02 0.0035 28.7 8.7 70 28-97 278-352 (398)
374 KOG3621 WD40 repeat-containing 41.1 57 0.0012 34.4 5.7 85 14-101 108-197 (726)
375 COG3386 Gluconolactonase [Carb 40.5 90 0.002 29.3 6.6 71 28-100 108-192 (307)
376 KOG1912 WD40 repeat protein [G 39.7 1.2E+02 0.0026 32.9 7.8 66 33-101 629-699 (1062)
377 PF00930 DPPIV_N: Dipeptidyl p 38.1 63 0.0014 29.9 5.1 68 31-99 43-129 (353)
378 KOG2315 Predicted translation 37.5 3.3E+02 0.0072 28.2 10.3 101 30-169 270-378 (566)
379 PF10168 Nup88: Nuclear pore c 37.5 5.1E+02 0.011 27.4 12.1 180 31-233 85-296 (717)
380 PF15492 Nbas_N: Neuroblastoma 37.3 65 0.0014 30.4 5.0 38 27-64 226-264 (282)
381 PF12913 SH3_6: SH3 domain of 36.5 47 0.001 23.8 3.1 28 66-94 21-48 (54)
382 KOG1645 RING-finger-containing 35.4 33 0.00072 34.1 2.9 48 53-101 175-224 (463)
383 PF02897 Peptidase_S9_N: Proly 34.9 1.8E+02 0.0039 27.1 7.6 69 33-101 172-260 (414)
384 KOG1920 IkappaB kinase complex 34.6 2.3E+02 0.005 32.0 9.1 78 34-122 199-291 (1265)
385 PF12894 Apc4_WD40: Anaphase-p 33.9 1.2E+02 0.0027 20.7 4.8 31 70-100 9-40 (47)
386 COG1520 FOG: WD40-like repeat 33.8 2.4E+02 0.0051 26.1 8.2 81 16-100 42-128 (370)
387 cd00216 PQQ_DH Dehydrogenases 33.2 1.1E+02 0.0023 30.1 6.0 52 39-92 404-457 (488)
388 PRK13684 Ycf48-like protein; P 32.6 2.5E+02 0.0053 26.2 8.1 77 18-97 161-239 (334)
389 TIGR03075 PQQ_enz_alc_DH PQQ-d 32.4 74 0.0016 31.8 4.9 53 34-89 465-520 (527)
390 PF10647 Gmad1: Lipoprotein Lp 32.2 2.2E+02 0.0047 25.4 7.4 61 32-92 113-185 (253)
391 PF08596 Lgl_C: Lethal giant l 32.2 1.9E+02 0.004 28.1 7.4 70 31-101 2-115 (395)
392 PF08728 CRT10: CRT10; InterP 31.3 2.5E+02 0.0053 29.9 8.5 108 44-175 117-246 (717)
393 PRK13684 Ycf48-like protein; P 30.9 2.6E+02 0.0057 26.0 8.0 77 19-96 204-283 (334)
394 PLN00033 photosystem II stabil 30.2 2.7E+02 0.0059 27.1 8.2 63 33-97 241-305 (398)
395 TIGR03074 PQQ_membr_DH membran 30.0 1.1E+02 0.0024 32.4 5.9 50 37-88 687-740 (764)
396 KOG1916 Nuclear protein, conta 29.4 54 0.0012 36.0 3.4 61 42-104 196-268 (1283)
397 PF06977 SdiA-regulated: SdiA- 29.1 2E+02 0.0043 26.2 6.7 62 32-93 172-242 (248)
398 PF05404 TRAP-delta: Transloco 28.7 48 0.001 29.0 2.5 30 165-207 77-106 (167)
399 KOG3950 Gamma/delta sarcoglyca 28.6 1.3E+02 0.0027 28.4 5.3 44 44-88 227-275 (292)
400 KOG1008 Uncharacterized conser 27.4 29 0.00063 36.5 1.1 83 14-101 127-225 (783)
401 cd04894 ACT_ACR-like_1 ACT dom 26.6 54 0.0012 24.7 2.1 30 64-100 18-47 (69)
402 PF01436 NHL: NHL repeat; Int 26.5 1.4E+02 0.0031 17.7 3.7 22 34-55 5-27 (28)
403 PF14783 BBS2_Mid: Ciliary BBS 25.5 3E+02 0.0064 22.5 6.4 60 28-91 40-102 (111)
404 COG5354 Uncharacterized protei 24.7 85 0.0018 32.1 3.7 59 29-90 31-89 (561)
405 PF03404 Mo-co_dimer: Mo-co ox 24.3 1.5E+02 0.0033 24.3 4.6 52 31-91 7-61 (131)
406 PF11725 AvrE: Pathogenicity f 23.5 4E+02 0.0087 31.3 8.8 142 15-206 388-532 (1774)
407 COG3391 Uncharacterized conser 23.1 6.4E+02 0.014 23.8 9.4 99 27-134 157-265 (381)
408 PF14870 PSII_BNR: Photosynthe 22.0 3.7E+02 0.0079 25.3 7.2 66 31-99 105-172 (302)
409 KOG1409 Uncharacterized conser 21.6 1.5E+02 0.0033 29.2 4.6 69 31-99 198-268 (404)
410 PF07676 PD40: WD40-like Beta 21.4 1.9E+02 0.0041 17.8 3.7 25 32-56 10-38 (39)
411 PF14870 PSII_BNR: Photosynthe 21.1 7E+02 0.015 23.4 9.1 71 25-95 181-255 (302)
412 KOG1916 Nuclear protein, conta 20.7 2E+02 0.0044 31.9 5.7 65 38-102 243-324 (1283)
413 KOG2280 Vacuolar assembly/sort 20.6 1.1E+03 0.024 25.6 10.9 117 35-183 37-165 (829)
No 1
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-66 Score=501.18 Aligned_cols=229 Identities=48% Similarity=0.649 Sum_probs=217.4
Q ss_pred eeeecccCCCceecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE
Q 044877 8 VQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI 87 (244)
Q Consensus 8 ~~~~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l 87 (244)
||..+ .|.|.|+|||+++++|+|+|||++|+||+||.+|+|||||+ .+++|||+|||||+||+|||+|+||+||
T Consensus 413 v~~~~-----kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 413 VQGKN-----KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred ccCcc-----eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEE
Confidence 77765 89999999999999999999999999999999999999999 6678999999999999999999999999
Q ss_pred EEeCCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877 88 LGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGK 167 (244)
Q Consensus 88 LaT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~ 167 (244)
||||++||+|+|+.++|++|++++||+++|++++|+||+|||+|||++-+.....++ |+|+|+||.|++|++||||+||
T Consensus 487 l~Tc~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~~~~~~k~~-a~Fs~nTg~g~qE~tIVtS~G~ 565 (644)
T KOG2395|consen 487 LATCKTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAGIDNEFKGT-AKFSFNTGIGAQERTIVTSTGP 565 (644)
T ss_pred EEecccEEEEEEEecccCCccccccccccccccCCCceeeecCHHHhhhhhhhccCc-eeEEEeccCCcceeeEEEeecc
Confidence 999999999999999999999999999999999999999999999776554455555 9999999999999999999999
Q ss_pred eEEEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCC---CCCCCEEEEcCCceeeeeecccC
Q 044877 168 FSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSD---LPEAPLVIATPMKVSSFSISSRQ 243 (244)
Q Consensus 168 fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~---~~~~~iiva~~~~v~~~~~~~~~ 243 (244)
|+|+|||+.||+|.++|||+++++..|++|.+...++.+|.++||+|+|.+.. .+.++.++|||..|++.+++++|
T Consensus 566 f~V~WnLd~VkNg~~~~Yri~r~~~~v~adnf~fg~ds~Viv~l~dDv~~v~~~s~k~p~r~vi~tp~k~s~~d~~~~~ 644 (644)
T KOG2395|consen 566 FSVSWNLDRVKNGKHYSYRIRRYLALVVADNFEFGEDSIVIVALPDDVFKVSVRSLKRPARLVIATPAKVSSQDLSGKR 644 (644)
T ss_pred eEEEEEhhHhhccCcchhhhhhhccceeEeeEEecCCceEEEecccchhhhcccccCCCCCceecccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999975 57899999999999999999986
No 2
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=100.00 E-value=1.8e-65 Score=516.85 Aligned_cols=202 Identities=44% Similarity=0.689 Sum_probs=192.3
Q ss_pred ceecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEE
Q 044877 18 VLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97 (244)
Q Consensus 18 ~~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L 97 (244)
-+.|.|+|||+++++|+|+|||++|+||+||.+|+|||||..+. +|||+|||||+||+|||||+||+||||||++||+|
T Consensus 565 k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlL 643 (794)
T PF08553_consen 565 KLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGK-RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLL 643 (794)
T ss_pred ceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccch-hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEE
Confidence 35599999999999999999999999999999999999998765 69999999999999999999999999999999999
Q ss_pred EEeeeccCCCCcccccccccC-CCCCcceeeeeCccchhhc----CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877 98 ICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLA----GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW 172 (244)
Q Consensus 98 ~dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~----G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW 172 (244)
+|+.+++|+|+|++||+++|+ ++||+||||+|+|||++++ |++++||+|+|| +|.|++|++||||+|+|+|+|
T Consensus 644 i~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fn--t~~~~~E~~IvtstG~f~v~W 721 (794)
T PF08553_consen 644 IDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFN--TGIGKQETSIVTSTGPFVVTW 721 (794)
T ss_pred EEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEe--cCCCCccceEEEeccCEEEEE
Confidence 999999999999999999998 7999999999999999887 889999999999 778889999999999999999
Q ss_pred echhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877 173 NFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISS 241 (244)
Q Consensus 173 n~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~ 241 (244)
||++||+|.++ ||.|+||+++|+ +|||+||++ ++|||||||||+|+++.+
T Consensus 722 nf~kV~~g~~~------------~Y~ikry~~~V~-----~dnF~fg~d--~~vival~~dV~m~~~~~ 771 (794)
T PF08553_consen 722 NFKKVKRGKKD------------PYQIKRYDENVV-----ADNFKFGSD--KNVIVALPNDVNMVKKKS 771 (794)
T ss_pred EHHHHhCCCCC------------ceEEEEcCCceE-----EccceeCCC--CcEEEEccchhhhhhhhh
Confidence 99999999998 568999999998 889999985 899999999999999865
No 3
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.7e-59 Score=449.09 Aligned_cols=201 Identities=28% Similarity=0.461 Sum_probs=190.3
Q ss_pred eecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEE
Q 044877 19 LNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILI 98 (244)
Q Consensus 19 ~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~ 98 (244)
+--.|+|||+++++|+|++|+++|+||+||.+|+|||||+.+. +|||+||+||+.|.+|++|+||+||||||.+||+|+
T Consensus 551 i~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~ 629 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLT 629 (776)
T ss_pred eeeeeehhccccccccccccccCceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeecceEEEE
Confidence 3457899999999999999999999999999999999999876 599999999999999999999999999999999999
Q ss_pred EeeeccCCCCcccccccccC-CCCCcceeeeeCccchh----hcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 99 CTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSH----LAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 99 dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~----~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
|+.+++++++|..||.++|+ ++||+|+||||+|||++ ++.+++.||||+|| ||.+++|++||||+|||+|.||
T Consensus 630 d~~ik~g~~aGr~GF~ksF~~~ekpkpkrLql~PeH~A~i~~~~K~~i~FTpAkFn--TGIda~E~tIVtStGpy~IsWn 707 (776)
T COG5167 630 DVPIKYGQPAGRDGFLKSFPASEKPKPKRLQLKPEHLAHINTYTKEEIDFTPAKFN--TGIDASENTIVTSTGPYVISWN 707 (776)
T ss_pred ecccccCCccccchhhhcCccccCCCcceeecCHHHHHHHHHhhccCcccchhhcc--cccCcccceEEeccCceEEEEe
Confidence 99999999999999999998 78999999999999984 45589999999999 8999999999999999999999
Q ss_pred chhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877 174 FQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISS 241 (244)
Q Consensus 174 ~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~ 241 (244)
|+.||+|..+ +|+|+||+.+|| +|||+||++ ++||||||+||+|++.++
T Consensus 708 Ld~vlng~~y------------sY~irry~a~Vv-----AdnFeFG~D--~~vIValpDDV~~v~v~s 756 (776)
T COG5167 708 LDDVLNGKLY------------SYQIRRYSALVV-----ADNFEFGED--SNVIVALPDDVRKVNVRS 756 (776)
T ss_pred hhhhhcCCcc------------hhhheeccccee-----eccccccCC--cceEEEccchhhhhhhhh
Confidence 9999999987 568999999988 999999985 899999999999999866
No 4
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.57 E-value=8.7e-15 Score=135.19 Aligned_cols=134 Identities=14% Similarity=0.321 Sum_probs=114.4
Q ss_pred CCceecccc-----cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEE
Q 044877 16 APVLNWSQG-----HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILG 89 (244)
Q Consensus 16 ~~~~~~~~~-----k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLa 89 (244)
-++.-|+-- |.|-.+++.++|++..++. +.+|..|++|++||.+...... .|.|+.||||||.+|++|.++|+
T Consensus 155 ~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~-~lsGh~DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 155 GTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY-TLSGHADTITGLSLSRYGSFLLS 233 (338)
T ss_pred ceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE-EeecccCceeeEEeccCCCcccc
Confidence 345566544 4677789999999999886 9999999999999998765444 68999999999999999999999
Q ss_pred eCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeee--eeeeecCCCCcceEEEEeeC
Q 044877 90 TTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA--QFSWVTENGKQERHLVATVG 166 (244)
Q Consensus 90 T~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a--kFn~~tg~~~~E~~IvtStG 166 (244)
+++ ++|++||.++ |. |+-|+++ .+.|+.++|++. +++|.+. ...+-.+|.+
T Consensus 234 nsMd~tvrvwd~rp----------~~-------p~~R~v~------if~g~~hnfeknlL~cswsp~---~~~i~ags~d 287 (338)
T KOG0265|consen 234 NSMDNTVRVWDVRP----------FA-------PSQRCVK------IFQGHIHNFEKNLLKCSWSPN---GTKITAGSAD 287 (338)
T ss_pred ccccceEEEEEecc----------cC-------CCCceEE------EeecchhhhhhhcceeeccCC---CCcccccccc
Confidence 996 7899999987 55 8889999 788999999998 9999752 5778889999
Q ss_pred CeEEEEechh
Q 044877 167 KFSVIWNFQQ 176 (244)
Q Consensus 167 ~fvvvWn~~k 176 (244)
+|+++||...
T Consensus 288 r~vyvwd~~~ 297 (338)
T KOG0265|consen 288 RFVYVWDTTS 297 (338)
T ss_pred ceEEEeeccc
Confidence 9999999754
No 5
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=9.7e-13 Score=119.24 Aligned_cols=114 Identities=21% Similarity=0.282 Sum_probs=89.8
Q ss_pred CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCc
Q 044877 31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTT 109 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~ 109 (244)
.-.++|..+++ .|++||.||.+|.||.+. .....+-+|+||+++.+|+||+++||.|+ .+|+|+|-.
T Consensus 146 D~V~Si~v~~h-eIvaGS~DGtvRtydiR~---G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~-------- 213 (307)
T KOG0316|consen 146 DGVSSIDVAEH-EIVAGSVDGTVRTYDIRK---GTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE-------- 213 (307)
T ss_pred CceeEEEeccc-EEEeeccCCcEEEEEeec---ceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccc--------
Confidence 34678888776 699999999999999954 44456889999999999999999999997 679999953
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
..++|+ .|.|+...=.+-.+... ...+.++.+|.+.+|+.|||..-.
T Consensus 214 -------------tGklL~------sYkGhkn~eykldc~l~---qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 214 -------------TGKLLK------SYKGHKNMEYKLDCCLN---QSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred -------------hhHHHH------Hhcccccceeeeeeeec---ccceeEEeccCCceEEEEEeccce
Confidence 345777 78887643334433321 346899999999999999997644
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.29 E-value=1.5e-11 Score=123.71 Aligned_cols=133 Identities=17% Similarity=0.308 Sum_probs=106.5
Q ss_pred CCCceeccccccc------CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE
Q 044877 15 GAPVLNWSQGHQF------SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI 87 (244)
Q Consensus 15 ~~~~~~~~~~k~Y------~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l 87 (244)
|-..--|+.-+-| .-..+..|++++|+.+ +|+||.|-.+|+||..++...+ .+-||..||++|++||+|+||
T Consensus 514 D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR-iF~GH~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 514 DQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR-IFTGHKGPVTALAFSPCGRYL 592 (707)
T ss_pred CceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE-EecCCCCceEEEEEcCCCceE
Confidence 3345667777655 2345688999999876 9999999999999999887777 678999999999999999999
Q ss_pred EEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeC
Q 044877 88 LGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVG 166 (244)
Q Consensus 88 LaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG 166 (244)
++... ..|+|||.. ..+++. .+.||.-.-..-.|+. + +.-.++++.|
T Consensus 593 aSg~ed~~I~iWDl~---------------------~~~~v~------~l~~Ht~ti~SlsFS~---d--g~vLasgg~D 640 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLA---------------------NGSLVK------QLKGHTGTIYSLSFSR---D--GNVLASGGAD 640 (707)
T ss_pred eecccCCcEEEEEcC---------------------CCcchh------hhhcccCceeEEEEec---C--CCEEEecCCC
Confidence 88774 779999972 234555 5666655555567773 2 6899999999
Q ss_pred CeEEEEechhhhcC
Q 044877 167 KFSVIWNFQQVKNG 180 (244)
Q Consensus 167 ~fvvvWn~~kV~~g 180 (244)
+-|-+||+.++...
T Consensus 641 nsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 641 NSVRLWDLTKVIEL 654 (707)
T ss_pred CeEEEEEchhhccc
Confidence 99999999999876
No 7
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=2.4e-10 Score=109.69 Aligned_cols=119 Identities=24% Similarity=0.330 Sum_probs=92.7
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT 108 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~ 108 (244)
+..+|+++++.|+ |++||.||.||+||.+++.+.+ .|++|.++|+++++++||++|++.+ +..|++||+.- +
T Consensus 247 ~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~-~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~----~- 320 (456)
T KOG0266|consen 247 TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR-KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET----G- 320 (456)
T ss_pred CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE-eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC----C-
Confidence 4469999999997 9999999999999999887676 5899999999999999999999888 57799999842 1
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCcc--ceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNN--KFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~--~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g 180 (244)
.. +++. .+.+... ..+...|+. .++.+++++.++-+-+||+....--
T Consensus 321 -----~~---------~~~~------~~~~~~~~~~~~~~~fsp-----~~~~ll~~~~d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 321 -----SK---------LCLK------LLSGAENSAPVTSVQFSP-----NGKYLLSASLDRTLKLWDLRSGKSV 369 (456)
T ss_pred -----ce---------eeee------cccCCCCCCceeEEEECC-----CCcEEEEecCCCeEEEEEccCCcce
Confidence 00 0222 2222222 356677872 2689999999999999999966533
No 8
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.09 E-value=3e-09 Score=102.10 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=89.2
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEecc-ccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN-SMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKN 106 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~-~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~ 106 (244)
..-+.+++++++|. |++|+.|+.||+||.. ..++.|+ |.||..+|++++|+|+|+.|++.+ +.+++|||..-
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~---- 277 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT---- 277 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEE-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC----
Confidence 34489999999996 9999999999999994 4466675 679999999999999999998887 58899999741
Q ss_pred CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
..+++ .+.+|.-.-+..-|+ . .+..++++|.+.++.+||..+=.
T Consensus 278 -----------------~~~~~------~l~~hs~~is~~~f~--~---d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 278 -----------------GECVR------KLKGHSDGISGLAFS--P---DGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred -----------------CeEEE------eeeccCCceEEEEEC--C---CCCEEEEcCCCccEEEEECCCCc
Confidence 11223 344444434445777 2 25778888889999999987544
No 9
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=5.6e-09 Score=105.82 Aligned_cols=178 Identities=24% Similarity=0.284 Sum_probs=110.4
Q ss_pred CCCceeccccc-----ccCCCCceeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEE
Q 044877 15 GAPVLNWSQGH-----QFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWI 87 (244)
Q Consensus 15 ~~~~~~~~~~k-----~Y~~~~~Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~l 87 (244)
|-.|-.|--+. -|.-++=+||||++| +-++++||.||+||||+....+.+ ..-.+.+-||.|+++|||++.
T Consensus 389 DKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv--~W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 389 DKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV--DWNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred cccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeE--eehhhhhhheeEEeccCCceE
Confidence 34466665543 345566689999999 334999999999999999765433 345688999999999999999
Q ss_pred EEeCC-cceEEEEeee-----------ccCC---CCcccccccccCCCC--------CcceeeeeCccch--hhcCC--c
Q 044877 88 LGTTD-TYLILICTLF-----------TDKN---GTTKTGFNGRMGNKI--------AAPRLLKLTPLDS--HLAGV--N 140 (244)
Q Consensus 88 LaT~~-~~L~L~dt~~-----------~~~~---~~~~~GF~~~~~~~k--------p~pr~L~L~Pe~~--~~~G~--~ 140 (244)
|+.|. .+.++|+|.- ..++ +.--+||+-..++.. -.-|++-++-.++ .|.|. .
T Consensus 467 vIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~ 546 (712)
T KOG0283|consen 467 VIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT 546 (712)
T ss_pred EEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC
Confidence 99885 6788888741 1111 112355654433211 0112222211121 22331 1
Q ss_pred cceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCc
Q 044877 141 NKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDD 204 (244)
Q Consensus 141 ~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e 204 (244)
.+=++|.|.- + ++.+|+||.+.+|++|+++.--.... -+..+++.+|....-..
T Consensus 547 ~SQ~~Asfs~---D--gk~IVs~seDs~VYiW~~~~~~~~~~-----~~~~~~~~s~e~f~s~~ 600 (712)
T KOG0283|consen 547 SSQISASFSS---D--GKHIVSASEDSWVYIWKNDSFNSEAS-----HKKTKSIRSYEHFSSVD 600 (712)
T ss_pred CcceeeeEcc---C--CCEEEEeecCceEEEEeCCCCccccc-----ccccccccccccccccc
Confidence 2335788872 3 79999999999999999854332221 13444555666555433
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=5.2e-09 Score=100.02 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=89.8
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG 107 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~ 107 (244)
.-.+-|++++|+|. ||+||-|-.+|+||.-+.....| ..||..=|.+|+.||||++|++.|+ +.|+|||..- |
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t-~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt----g 189 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT-CKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT----G 189 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee-ecCCccEEEEEEECCCcchhhccccCCeEEEecCCC----C
Confidence 44588999999997 99999999999999988766664 6899999999999999999999997 7799999632 1
Q ss_pred CcccccccccCCCCCcceeeeeCccchhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
+ +..|-|+= |..+ ..+.|+|.+-+ ++ -.++..+|-++-+.+||+..
T Consensus 190 ~-------------~~g~~l~g-----H~K~It~Lawep~hl~--p~---~r~las~skDg~vrIWd~~~ 236 (480)
T KOG0271|consen 190 Q-------------QIGRALRG-----HKKWITALAWEPLHLV--PP---CRRLASSSKDGSVRIWDTKL 236 (480)
T ss_pred C-------------cccccccC-----cccceeEEeecccccC--CC---ccceecccCCCCEEEEEccC
Confidence 1 11111110 0011 13577777666 32 35788889999999999876
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.92 E-value=9.1e-09 Score=104.40 Aligned_cols=173 Identities=21% Similarity=0.236 Sum_probs=119.0
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT 108 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~ 108 (244)
...+|++.+|||+ ||+|+.||+||+||...+-|--| +..|-..|++|.++.+|+.||+.|+ .++|.||.. ++.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT-FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk----RYr 425 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT-FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK----RYR 425 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE-eccCCCceEEEEEEecCCEEEEeecCCeEEeeeec----ccc
Confidence 4489999999999 99999999999999987767775 5669999999999999999999995 889999963 221
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCe-EEEEech-----hhhcCCc
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKF-SVIWNFQ-----QVKNGSH 182 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~f-vvvWn~~-----kV~~g~~ 182 (244)
+ |. +++. -+|..|+..+-+.++|-+++++-+.| +++|+++ +||.|..
T Consensus 426 N---fR--------------------Tft~----P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 426 N---FR--------------------TFTS----PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred e---ee--------------------eecC----CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence 1 22 3332 23567776665667899999999999 5699987 5888876
Q ss_pred cccc---cc-cC--C-ceeeeeEEEecCcccccc---------ceecCccccCCCCCCCEEEEcCC-ceeeee
Q 044877 183 ECYQ---NQ-EG--L-KSCYCYKIVLKDDSIVDS---------RFMHDKFAVSDLPEAPLVIATPM-KVSSFS 238 (244)
Q Consensus 183 ~~y~---~~-~~--l-~~~~~Y~i~~~~e~iv~~---------~f~~d~f~~~~~~~~~iiva~~~-~v~~~~ 238 (244)
-+-. +. .| | ..-+++.|++-+ |+++ .=++=++.|.-+ -+.|-|||-+ .+.-++
T Consensus 479 gPVs~l~f~~~~~~LaS~SWDkTVRiW~--if~s~~~vEtl~i~sdvl~vsfrPd-G~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 479 GPVSGLSFSPDGSLLASGSWDKTVRIWD--IFSSSGTVETLEIRSDVLAVSFRPD-GKELAVATLDGQITFFD 548 (893)
T ss_pred CcceeeEEccccCeEEeccccceEEEEE--eeccCceeeeEeeccceeEEEEcCC-CCeEEEEEecceEEEEE
Confidence 4321 00 00 0 112445555531 2222 112235666643 2789999887 444443
No 12
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.90 E-value=4e-08 Score=79.77 Aligned_cols=113 Identities=17% Similarity=0.272 Sum_probs=81.3
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT 108 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~ 108 (244)
...++++.++++. +++|+.+|.|++||..+.+... .++++..+|.+++++|+++++++++ +..|.+||...
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~------ 166 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT------ 166 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc------
Confidence 3689999999877 6666679999999997665444 4667888999999999999999888 78899999741
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
.+.++ .+.++....+...|+ . .++.+++++.+..+.+||++.
T Consensus 167 ---------------~~~~~------~~~~~~~~i~~~~~~--~---~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 167 ---------------GKCVA------TLTGHTGEVNSVAFS--P---DGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred ---------------cccce------eEecCccccceEEEC--C---CcCEEEEecCCCcEEEEECCC
Confidence 01111 011122223334454 2 246788888899999999974
No 13
>PTZ00421 coronin; Provisional
Probab=98.88 E-value=3e-08 Score=97.11 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=81.8
Q ss_pred CCceeEEEecC-CCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCC-EEEEeC-CcceEEEE
Q 044877 30 GTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGR-WILGTT-DTYLILIC 99 (244)
Q Consensus 30 ~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~-~lLaT~-~~~L~L~d 99 (244)
...+++++++| ++. ||+||.||.||+||..... .....|.++..+|.+|+++|++. +|++++ +.+|+|||
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 34689999999 776 9999999999999985431 11234788999999999999974 555545 67899999
Q ss_pred eeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
..- + ..+. .+.++........|+ + + +..++++|.++.+.+||+++
T Consensus 155 l~t----g-----------------~~~~------~l~~h~~~V~sla~s--p-d--G~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 155 VER----G-----------------KAVE------VIKCHSDQITSLEWN--L-D--GSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred CCC----C-----------------eEEE------EEcCCCCceEEEEEE--C-C--CCEEEEecCCCEEEEEECCC
Confidence 731 0 1111 122333334455666 2 2 56788889999999999874
No 14
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.87 E-value=1.9e-08 Score=93.45 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=86.9
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKN 106 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~ 106 (244)
..++.+|.+.|+|. +|+||.||.+||||.+..+..-. .-+..--||++|+||..||+|.|... .+.-+||+.-
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk---- 304 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK---- 304 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc----
Confidence 34578999999999 99999999999999986554432 23456789999999999999999875 5599999862
Q ss_pred CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
.++.- .+.||.++-+.-.-+ + + +--+..+|=+.++-+|+
T Consensus 305 -----------------~e~vg------~L~GHeNRvScl~~s--~-D--G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 -----------------GERVG------VLAGHENRVSCLGVS--P-D--GMAVATGSWDSTLRIWA 343 (343)
T ss_pred -----------------cceEE------EeeccCCeeEEEEEC--C-C--CcEEEecchhHheeecC
Confidence 12222 467888877776665 2 2 57788888889998885
No 15
>PTZ00420 coronin; Provisional
Probab=98.83 E-value=6e-08 Score=96.82 Aligned_cols=70 Identities=9% Similarity=0.115 Sum_probs=58.5
Q ss_pred CCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 30 GTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 30 ~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
....++++++|+|. +|+||.||.||+||..+++... .+. ++++|.+++++|||++|+++|. ..|+|||.+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~-~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF-QIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE-EEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence 35689999999886 5799999999999998765444 344 6789999999999999998884 779999974
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.83 E-value=1e-07 Score=77.37 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=80.2
Q ss_pred CceeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877 31 TNFQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT 108 (244)
Q Consensus 31 ~~Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~ 108 (244)
..+++++.+++| .|++|+.+|.|++||....+..+ .+.++..+|.++.++||+.++++.+ +..|.+||..-
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~------ 250 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG-TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT------ 250 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceec-chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC------
Confidence 368999999999 59999999999999997665444 4556788999999999999998888 68899999631
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
.+.+. .+.++....+...|+ . .+..+++++.+..+.+|+
T Consensus 251 ---------------~~~~~------~~~~~~~~i~~~~~~--~---~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 ---------------GECVQ------TLSGHTNSVTSLAWS--P---DGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---------------ceeEE------EccccCCcEEEEEEC--C---CCCEEEEecCCCeEEecC
Confidence 11111 111222233344554 2 257888889999999996
No 17
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.83 E-value=4e-08 Score=94.52 Aligned_cols=137 Identities=15% Similarity=0.206 Sum_probs=97.7
Q ss_pred CCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeecc
Q 044877 29 RGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTD 104 (244)
Q Consensus 29 ~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~ 104 (244)
-..++.|++++|.+. ||+||.||+|+|||++..+..-..+++|.+.|..|.+||+-.-|||++ +..|.+||..-..
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 356789999999554 899999999999999988766667899999999999999999999887 6789999985321
Q ss_pred CCCCcccccccccC-CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCcc
Q 044877 105 KNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHE 183 (244)
Q Consensus 105 ~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~ 183 (244)
=+++-. .+.-.|.+| ++-+.+.+.=.-|+|.+ ...=.+.+.+.++-+-||.....+-+..+
T Consensus 351 --------~eq~~eda~dgppEll--------F~HgGH~~kV~DfsWnp--~ePW~I~SvaeDN~LqIW~~s~~i~~~e~ 412 (422)
T KOG0264|consen 351 --------EEQSPEDAEDGPPELL--------FIHGGHTAKVSDFSWNP--NEPWTIASVAEDNILQIWQMAENIYNPED 412 (422)
T ss_pred --------cccChhhhccCCccee--------EEecCcccccccccCCC--CCCeEEEEecCCceEEEeeccccccCccc
Confidence 222211 112223333 23234555567899975 21233444556788999999887766543
No 18
>PTZ00420 coronin; Provisional
Probab=98.82 E-value=5.9e-08 Score=96.85 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=79.8
Q ss_pred CCceeEEEecCC-Cc-EEEeCCCCcEEEEecccccc-------ceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEE
Q 044877 30 GTNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQ-------AKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILI 98 (244)
Q Consensus 30 ~~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~-------aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~ 98 (244)
....++++++|+ +. ||+||.||.||+||...... ....+.+|..+|.+|+++|++.++|++ + +.+|+||
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 346899999996 55 99999999999999864321 111467899999999999999998755 3 6889999
Q ss_pred EeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
|..- + . ....+. +....+...|++ + +..+++++.++-+.+||+++
T Consensus 154 Dl~t----g---------------~-~~~~i~--------~~~~V~Slswsp---d--G~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 154 DIEN----E---------------K-RAFQIN--------MPKKLSSLKWNI---K--GNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred ECCC----C---------------c-EEEEEe--------cCCcEEEEEECC---C--CCEEEEEecCCEEEEEECCC
Confidence 9741 0 0 111111 111234556662 2 45666677799999999874
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.81 E-value=4.1e-08 Score=90.68 Aligned_cols=116 Identities=21% Similarity=0.250 Sum_probs=87.9
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcc
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTK 110 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~ 110 (244)
.+-++++++|+ ..+||-||.+||||..+++..+ .|-||+.-|.+|++|+|.+-|++.+ +++|+||++.- .
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~-~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-------~ 137 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTR-RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-------V 137 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEE-EEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-------c
Confidence 57789999998 8899999999999998875444 6899999999999999999999999 58899999851 1
Q ss_pred cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
.-|+. +.-++.-=-+.-+|+.. ..+..++.+|-++.|-+||++...
T Consensus 138 ck~t~-------------------~~~~~~~WVscvrfsP~---~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 138 CKYTI-------------------HEDSHREWVSCVRFSPN---ESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred EEEEE-------------------ecCCCcCcEEEEEEcCC---CCCcEEEEccCCceEEEEccCCcc
Confidence 11221 11111222345577732 235778889999999999998765
No 20
>PTZ00421 coronin; Provisional
Probab=98.81 E-value=7.2e-08 Score=94.47 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=60.5
Q ss_pred CCceeEEEecCCC--cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 30 GTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 30 ~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
...+.+++++|++ .||+||.||.||+||..+++... .+.++.++|.+|+++|||+.|++++. ..|+|||.+
T Consensus 125 ~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 125 TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-VIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-EEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence 3458899999975 39999999999999998765444 57889999999999999999988884 789999974
No 21
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=4.9e-08 Score=93.45 Aligned_cols=121 Identities=20% Similarity=0.258 Sum_probs=93.9
Q ss_pred CCCCc-eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEe-----CCCCCEEEEeC-CcceEEEE
Q 044877 28 SRGTN-FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDV-----TYDGRWILGTT-DTYLILIC 99 (244)
Q Consensus 28 ~~~~~-Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdv-----S~DG~~lLaT~-~~~L~L~d 99 (244)
+...+ +.||+.+|||. ||+|+.||.|||||-.++.+---.|+||.-.|++++. .|.++.|++.+ ++.++|||
T Consensus 154 KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 154 KGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred cCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 44444 88999999998 9999999999999987666554479999999999975 57888766555 48899999
Q ss_pred eeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh---
Q 044877 100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ--- 176 (244)
Q Consensus 100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k--- 176 (244)
+.. .+++. .+.||....|.-+.- + +.-.-.+|-++-+-+|+..+
T Consensus 234 ~~~---------------------~~~~~------~lsgHT~~VTCvrwG----G--~gliySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 234 TKL---------------------GTCVR------TLSGHTASVTCVRWG----G--EGLIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred ccC---------------------ceEEE------EeccCccceEEEEEc----C--CceEEecCCCceEEEEEccchhH
Confidence 853 23444 678998877776652 1 45667888999999999665
Q ss_pred --hhcCC
Q 044877 177 --VKNGS 181 (244)
Q Consensus 177 --V~~g~ 181 (244)
.++|.
T Consensus 281 ~r~lkGH 287 (480)
T KOG0271|consen 281 CRELKGH 287 (480)
T ss_pred HHhhccc
Confidence 55554
No 22
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.75 E-value=4.9e-08 Score=93.93 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=81.5
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCC
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNG 107 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~ 107 (244)
.++-+|+++|+|+ ||+||.|+.+|+||++..+... ++|+|-+-|+.|.++|++-+.|+|| +++++||.+.
T Consensus 346 k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly-~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~------ 418 (459)
T KOG0272|consen 346 KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY-TIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR------ 418 (459)
T ss_pred cceeeEeECCCceEEeecCCCCcEEEeeecccccce-ecccccchhhheEecccCCeEEEEcccCcceeeecCC------
Confidence 3577999999999 9999999999999998877665 6899999999999999665556665 7999999973
Q ss_pred CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
+|. .++ .+.||.-+--+--.+ ....-.+.+|-++-+-.|.
T Consensus 419 ----~~~-----------~~k------sLaGHe~kV~s~Dis-----~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 ----TWS-----------PLK------SLAGHEGKVISLDIS-----PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ----Ccc-----------cch------hhcCCccceEEEEec-----cCCceEEEeccCceeeecc
Confidence 133 444 677876533333222 2245566666677777774
No 23
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.75 E-value=3.1e-08 Score=95.30 Aligned_cols=120 Identities=19% Similarity=0.184 Sum_probs=93.0
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT 109 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~ 109 (244)
.+.++|+.++|. +++|+.|..=|+||.+++++-. .|.||-.||.+|++||+|-.|+..+ +++.++||.+-.
T Consensus 305 ~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im-~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------ 377 (459)
T KOG0272|consen 305 GVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM-FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------ 377 (459)
T ss_pred ccceeEecCCCceeeccCccchhheeecccCcEEE-EecccccceeeEeECCCceEEeecCCCCcEEEeeeccc------
Confidence 467999999999 8999999999999999999887 6899999999999999998874333 699999997531
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech-----hhhcCCcc
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ-----QVKNGSHE 183 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~-----kV~~g~~~ 183 (244)
+.|-+-|.|..+ .+.-+|+ + ..+-..+.+|-++.+-+|+-+ +.++|...
T Consensus 378 ---------------~~ly~ipAH~nl------VS~Vk~~--p--~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~ 431 (459)
T KOG0272|consen 378 ---------------SELYTIPAHSNL------VSQVKYS--P--QEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG 431 (459)
T ss_pred ---------------ccceecccccch------hhheEec--c--cCCeEEEEcccCcceeeecCCCcccchhhcCCcc
Confidence 225545555533 3455666 2 235778888999999998743 56666654
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.70 E-value=1.9e-07 Score=86.42 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=85.2
Q ss_pred CCceeEEEecCCC---cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccC
Q 044877 30 GTNFQCFASTGDG---SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDK 105 (244)
Q Consensus 30 ~~~Ft~vats~~G---~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~ 105 (244)
++=++||.++|+- .|+.+|.|+.+|+||+.+.+ .++.++|+..-++-+.+||||..+.+.-+ ..++|||...
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~--- 223 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE--- 223 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC---
Confidence 4448999999964 39999999999999998875 66788999999999999999997776665 5599999742
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
+ +.|. ..++...-..--|+ + .+.++.+.+|+-+.+||++.
T Consensus 224 ---~---------------k~ly-------sl~a~~~v~sl~fs--p----nrywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 224 ---G---------------KNLY-------SLEAFDIVNSLCFS--P----NRYWLCAATATSIKIWDLES 263 (315)
T ss_pred ---C---------------ceeE-------eccCCCeEeeEEec--C----CceeEeeccCCceEEEeccc
Confidence 1 2222 22222222233565 2 58999999999999999864
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.69 E-value=1.5e-07 Score=92.67 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=88.1
Q ss_pred ccccc--CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cce
Q 044877 23 QGHQF--SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYL 95 (244)
Q Consensus 23 ~~k~Y--~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L 95 (244)
+.+.. ..+.+-+|+|.+|+|. +|+|..||.|++|.+.+.. .++ +..+-.||+.|+.||||+||+|+-. .-+
T Consensus 434 ~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~--~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 434 QTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAK--LLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred CCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceee--eecccCCceEEEECCCCcEEEEeccCCcE
Confidence 44444 3445578999999998 9999999999999997633 344 3458899999999999999966644 559
Q ss_pred EEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 96 ILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 96 ~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
.|||..-. |. . + ..--|+.||-+...=....+++..+|-+..||+|+++
T Consensus 512 v~yd~~s~---------~~--------~---~-----------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 512 VLYDVASR---------EV--------K---T-----------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred EEEEcccC---------ce--------e---c-----------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 99997421 11 0 0 1245667754422212346899999999999999998
Q ss_pred hh
Q 044877 176 QV 177 (244)
Q Consensus 176 kV 177 (244)
+=
T Consensus 561 kP 562 (603)
T KOG0318|consen 561 KP 562 (603)
T ss_pred Ch
Confidence 63
No 26
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.67 E-value=8.5e-08 Score=92.18 Aligned_cols=132 Identities=17% Similarity=0.299 Sum_probs=97.9
Q ss_pred cCCCceecccccccCCCCceeE-----EEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE
Q 044877 14 AGAPVLNWSQGHQFSRGTNFQC-----FASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL 88 (244)
Q Consensus 14 ~~~~~~~~~~~k~Y~~~~~Ft~-----vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL 88 (244)
++-....|.=.|.|.+++.|.. |++++. .+++|+.|+.||+||.++..+.. ..| +|..|++|++|+||.-||
T Consensus 281 ~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~-~~~SgH~DkkvRfwD~Rs~~~~~-sv~-~gg~vtSl~ls~~g~~lL 357 (459)
T KOG0288|consen 281 ADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSIS-DVISGHFDKKVRFWDIRSADKTR-SVP-LGGRVTSLDLSMDGLELL 357 (459)
T ss_pred ccchhhhhhhhhhheeccccccccccceEecce-eeeecccccceEEEeccCCceee-Eee-cCcceeeEeeccCCeEEe
Confidence 4566889999999999988643 445432 48999999999999988765444 457 555999999999999999
Q ss_pred EeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877 89 GTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGK 167 (244)
Q Consensus 89 aT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~ 167 (244)
+.+ +++|.++|.+- |+ .+...+.+- ...+ ...+.+-|+ ++ ++.+..+|.+.
T Consensus 358 sssRDdtl~viDlRt----------~e----------I~~~~sA~g-~k~a--sDwtrvvfS--pd---~~YvaAGS~dg 409 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRT----------KE----------IRQTFSAEG-FKCA--SDWTRVVFS--PD---GSYVAAGSADG 409 (459)
T ss_pred eecCCCceeeeeccc----------cc----------EEEEeeccc-cccc--cccceeEEC--CC---CceeeeccCCC
Confidence 888 59999999753 22 111111111 1233 347888998 42 69999999999
Q ss_pred eEEEEechh
Q 044877 168 FSVIWNFQQ 176 (244)
Q Consensus 168 fvvvWn~~k 176 (244)
-|++|++..
T Consensus 410 sv~iW~v~t 418 (459)
T KOG0288|consen 410 SVYIWSVFT 418 (459)
T ss_pred cEEEEEccC
Confidence 999999653
No 27
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.65 E-value=1.8e-07 Score=87.25 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=92.8
Q ss_pred CCceeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccC
Q 044877 30 GTNFQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDK 105 (244)
Q Consensus 30 ~~~Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~ 105 (244)
.-.|++.+.+| +|+-+....|+.++.||.++++++...-..||..+..+|+.|+-+++|+|| +.||+|||++-+
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-- 247 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-- 247 (370)
T ss_pred cceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--
Confidence 34599999999 777777778999999999999877655578999999999999999999999 488999999631
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
.--++=.|+|.|+ .=.-||| +. ..+-++.++++.-|+.|....|-
T Consensus 248 ------------------k~pv~el~~HsHW------vW~VRfn--~~--hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 248 ------------------KFPVQELPGHSHW------VWAVRFN--PE--HDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred ------------------CccccccCCCceE------EEEEEec--Cc--cceEEEecCCCceeEEEeccccc
Confidence 1123323444433 2345888 32 25778888999999999998886
No 28
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.65 E-value=8.3e-08 Score=92.87 Aligned_cols=72 Identities=21% Similarity=0.399 Sum_probs=63.8
Q ss_pred CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEee
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTL 101 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~ 101 (244)
+...++|.+++|||- +++|+.||.+|+||...+. .-+.||||-.||+.|.|+-||=|++.+|++. ++|||.+
T Consensus 346 s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred ccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 445699999999999 7999999999999998775 4346999999999999999999999999744 9999975
No 29
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.64 E-value=4.7e-07 Score=91.98 Aligned_cols=114 Identities=7% Similarity=0.097 Sum_probs=81.7
Q ss_pred CCceeEEEecCC-Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeeeccC
Q 044877 30 GTNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLFTDK 105 (244)
Q Consensus 30 ~~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~~~~ 105 (244)
..++++++.++. +. ||+|+.||.||+||..+.+..+ .+.++.++|.+|+++| ||.+|++++ +.+|+|||....
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-- 608 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT-EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-- 608 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE-EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC--
Confidence 445788888873 44 9999999999999997765444 5688999999999996 888888777 578999997420
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
..+. .+..+ .......|+ . ..+..++++|.+..+.+||++.
T Consensus 609 -------------------~~~~------~~~~~-~~v~~v~~~--~--~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 609 -------------------VSIG------TIKTK-ANICCVQFP--S--ESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred -------------------cEEE------EEecC-CCeEEEEEe--C--CCCCEEEEEeCCCeEEEEECCC
Confidence 1111 11111 122344554 2 2367899999999999999875
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.64 E-value=3.7e-08 Score=95.82 Aligned_cols=155 Identities=21% Similarity=0.307 Sum_probs=106.3
Q ss_pred cccCCCCc-eeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877 25 HQFSRGTN-FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT 100 (244)
Q Consensus 25 k~Y~~~~~-Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt 100 (244)
+.|+-.++ .+|+-..| .|+ +++|+.||.|.||+....+...+++-||..||..+.+|++|+-+|+++ +.+|+|||+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 34444555 78888889 889 899999999999999874434445788999999999999999999887 799999999
Q ss_pred eeccCCCCcccccccccCCCCCcceeeeeCccc--hhhcCC---------------------cc-ceeeeeeeeecCCCC
Q 044877 101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLD--SHLAGV---------------------NN-KFHKAQFSWVTENGK 156 (244)
Q Consensus 101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~--~~~~G~---------------------~~-~Ft~akFn~~tg~~~ 156 (244)
.. |.-.. +|... -.|-+++.+|.+ +.+.|. .+ .-....|- +.
T Consensus 288 ET----G~~~~----~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~-----~~ 353 (503)
T KOG0282|consen 288 ET----GQVLS----RFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV-----DE 353 (503)
T ss_pred cc----ceEEE----EEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc-----cC
Confidence 64 22222 23211 246778887765 323332 11 11122443 33
Q ss_pred cceEEEEeeCCeEEEEechhhhcCCccccccccCCceeee
Q 044877 157 QERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYC 196 (244)
Q Consensus 157 ~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~ 196 (244)
+.+.|.+|.++-+++|+++.= ..-.|+..-..++|-+
T Consensus 354 g~rFissSDdks~riWe~~~~---v~ik~i~~~~~hsmP~ 390 (503)
T KOG0282|consen 354 GRRFISSSDDKSVRIWENRIP---VPIKNIADPEMHTMPC 390 (503)
T ss_pred CceEeeeccCccEEEEEcCCC---ccchhhcchhhccCcc
Confidence 689999999999999998742 2223333345566666
No 31
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=6.5e-08 Score=91.52 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=93.3
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT 109 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~ 109 (244)
...|+.++.+.. +|+||.||.|++|...++.|.+-+-..|.--|+++.||.|+..||+++ +.++|+--.
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl--------- 335 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL--------- 335 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc---------
Confidence 467999999877 999999999999999999888855447889999999999999999998 566777332
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
...++|+ .+-||.--.+.|.|. +.+..+|.+|++.-|-+|+.+.
T Consensus 336 ------------KSGK~LK------EfrGHsSyvn~a~ft-----~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 336 ------------KSGKCLK------EFRGHSSYVNEATFT-----DDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred ------------ccchhHH------HhcCccccccceEEc-----CCCCeEEEecCCccEEEecCcc
Confidence 1345677 678887555678996 2379999999999999999875
No 32
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.5e-06 Score=79.47 Aligned_cols=152 Identities=17% Similarity=0.219 Sum_probs=101.1
Q ss_pred CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc--------------------------------------------c
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--------------------------------------------Q 63 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--------------------------------------------~ 63 (244)
.+...+++.++.+|. +++.|.|..|||||...++ .
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 467789999999998 7888999999999997543 3
Q ss_pred ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccc
Q 044877 64 AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNK 142 (244)
Q Consensus 64 aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~ 142 (244)
.+ -++||++.|.+|+++|=+...|+++ +++|+|||.+.+ .+--|. ...+.++
T Consensus 93 lR-YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-------------------~cqg~l------~~~~~pi- 145 (311)
T KOG1446|consen 93 LR-YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-------------------KCQGLL------NLSGRPI- 145 (311)
T ss_pred EE-EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-------------------CCceEE------ecCCCcc-
Confidence 34 4799999999999999888888776 689999998752 111122 2333444
Q ss_pred eeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCC
Q 044877 143 FHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLP 222 (244)
Q Consensus 143 Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~ 222 (244)
+-|+ + ++=-..+++.+..+-.+|++..=+|=. .+...+++-. .+ -.+-+|..++
T Consensus 146 ---~AfD--p---~GLifA~~~~~~~IkLyD~Rs~dkgPF---------------~tf~i~~~~~-~e--w~~l~FS~dG 199 (311)
T KOG1446|consen 146 ---AAFD--P---EGLIFALANGSELIKLYDLRSFDKGPF---------------TTFSITDNDE-AE--WTDLEFSPDG 199 (311)
T ss_pred ---eeEC--C---CCcEEEEecCCCeEEEEEecccCCCCc---------------eeEccCCCCc-cc--eeeeEEcCCC
Confidence 4555 2 133444555555899999998866633 3444442111 11 2244566543
Q ss_pred CCCEEEEcCCce
Q 044877 223 EAPLVIATPMKV 234 (244)
Q Consensus 223 ~~~iiva~~~~v 234 (244)
+-|++.|.+++
T Consensus 200 -K~iLlsT~~s~ 210 (311)
T KOG1446|consen 200 -KSILLSTNASF 210 (311)
T ss_pred -CEEEEEeCCCc
Confidence 67777777763
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.57 E-value=8.9e-07 Score=89.98 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=80.8
Q ss_pred CCCceeEEEec-CCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877 29 RGTNFQCFAST-GDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK 105 (244)
Q Consensus 29 ~~~~Ft~vats-~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~ 105 (244)
.+....|++++ ++|. ||+||.||.|++||.+..+.....+.++..+|.+|.++ |+.+|++++ +++|+|||.....
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~- 693 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSI- 693 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCc-
Confidence 34467788885 4676 99999999999999976543223467899999999997 788888776 5789999974210
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
.+. ....+. .+.|+...-....|+ . .+..++++|.+..+.+|+..
T Consensus 694 -----~~~---------~~~~l~------~~~gh~~~i~~v~~s--~---~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 694 -----SGI---------NETPLH------SFMGHTNVKNFVGLS--V---SDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred -----ccc---------CCcceE------EEcCCCCCeeEEEEc--C---CCCEEEEEeCCCEEEEEECC
Confidence 000 111122 234443211223454 2 24688889999999999964
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.56 E-value=8.2e-07 Score=81.51 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=82.1
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG 107 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~ 107 (244)
..++++|.+..+|. +++||+||.+|+||.+...+.+ .+ .+..||..|.+.|+-.-|++... ..|++||..- +
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR-~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~----~ 156 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR-NY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE----N 156 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccch-hc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccC----C
Confidence 36799999999999 9999999999999998865455 33 47799999999999998887776 5599999741 1
Q ss_pred CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
-|. -+|-||+... .++..-.| + +..++.+-.-...++|++-.
T Consensus 157 ----~c~------------~~liPe~~~~------i~sl~v~~---d--gsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 157 ----SCT------------HELIPEDDTS------IQSLTVMP---D--GSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred ----ccc------------cccCCCCCcc------eeeEEEcC---C--CcEEEEecCCccEEEEEccC
Confidence 122 2455766522 23444443 1 46666666666678898754
No 35
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.55 E-value=6.8e-07 Score=88.21 Aligned_cols=136 Identities=19% Similarity=0.285 Sum_probs=104.2
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccc-cccceecCCCCCCCeeEEEeCCCCCEEEEeCC---cc--eEEEEeeecc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNS-MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD---TY--LILICTLFTD 104 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~-~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~---~~--L~L~dt~~~~ 104 (244)
+.|-+-++|.|. ||+|...|.||+||... ....|+.++-+..||..|+.++||+.|+|--+ .+ ..+||+--.
T Consensus 61 ~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S- 139 (603)
T KOG0318|consen 61 QVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS- 139 (603)
T ss_pred eeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc-
Confidence 367777899997 99999999999999965 44678899999999999999999999998864 33 789997422
Q ss_pred CCCCcccccccccC--CCCCc-ceeeeeCccch---hhcCCccceeee-----------eeeeecCCCCcceEEEEeeCC
Q 044877 105 KNGTTKTGFNGRMG--NKIAA-PRLLKLTPLDS---HLAGVNNKFHKA-----------QFSWVTENGKQERHLVATVGK 167 (244)
Q Consensus 105 ~~~~~~~GF~~~~~--~~kp~-pr~L~L~Pe~~---~~~G~~~~Ft~a-----------kFn~~tg~~~~E~~IvtStG~ 167 (244)
.-.-.|-.+++- +-||. |.|+.---||- .|-|.|.+|... ||+ ..+|+.|.++.+.
T Consensus 140 --vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys-----PDG~~Fat~gsDg 212 (603)
T KOG0318|consen 140 --VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS-----PDGSRFATAGSDG 212 (603)
T ss_pred --cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC-----CCCCeEEEecCCc
Confidence 122456677774 44555 88887666773 456777766543 555 2379999999999
Q ss_pred eEEEEech
Q 044877 168 FSVIWNFQ 175 (244)
Q Consensus 168 fvvvWn~~ 175 (244)
-++++|=+
T Consensus 213 ki~iyDGk 220 (603)
T KOG0318|consen 213 KIYIYDGK 220 (603)
T ss_pred cEEEEcCC
Confidence 99999854
No 36
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.54 E-value=9.4e-07 Score=81.13 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=97.2
Q ss_pred ccccCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 24 GHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 24 ~k~Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
-+.|..+-++++|..+| .+++++|..+|.||+||+....+...++|....+|.++.+-|||+.|+|.. +.....|+..
T Consensus 118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 35688889999999999 556999999999999999876677778999999999999999999999765 5779999975
Q ss_pred eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCC
Q 044877 102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGS 181 (244)
Q Consensus 102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~ 181 (244)
-. ...+ .|.|.|-..+ +.---.+-.|+ + .......+|.++-+.+||.+..+++.
T Consensus 198 ~~----~~~s----------------~l~P~~k~~a-h~~~il~C~lS--P---d~k~lat~ssdktv~iwn~~~~~kle 251 (311)
T KOG0315|consen 198 NH----QTAS----------------ELEPVHKFQA-HNGHILRCLLS--P---DVKYLATCSSDKTVKIWNTDDFFKLE 251 (311)
T ss_pred CC----Cccc----------------cceEhhheec-ccceEEEEEEC--C---CCcEEEeecCCceEEEEecCCceeeE
Confidence 31 1111 1222222111 11111244565 3 25677788899999999999886555
Q ss_pred c
Q 044877 182 H 182 (244)
Q Consensus 182 ~ 182 (244)
+
T Consensus 252 ~ 252 (311)
T KOG0315|consen 252 L 252 (311)
T ss_pred E
Confidence 4
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=98.53 E-value=5.7e-07 Score=91.19 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=64.9
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT 103 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~ 103 (244)
+-+++|++++|+|. +|+|+.||.|.+||..+++..+ .|-+|-+.|.+|.||.||.-|++.. +++++|||....
T Consensus 577 ~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~-~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 577 KGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK-QLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh-hhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 45699999999998 9999999999999999888777 5678899999999999999998776 588999997643
No 38
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=2.3e-07 Score=87.30 Aligned_cols=69 Identities=25% Similarity=0.373 Sum_probs=62.8
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF 102 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~ 102 (244)
=.|..+++.|+ +|+|..||.|-+||..+.+-|+ .|-+|=.||++|+.|+||+.||+++ +..+.|||..-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar-~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR-MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh-hhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 46999999998 9999999999999999998888 5788999999999999999999877 58899999863
No 39
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.49 E-value=1.6e-06 Score=82.49 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=95.7
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG 107 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~ 107 (244)
+...-|++.+|+-. +|+|+.|..--|||..++..+- .++||+|.|+.++||.||.+|+..-+ .-|++|+..
T Consensus 64 ~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s------ 136 (399)
T KOG0296|consen 64 TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS------ 136 (399)
T ss_pred CCceEEEEeCCCCceEEecCCCceEEEEEccCCccee-EecCCCCceEEEEEccCceEEEecCCCccEEEEEcc------
Confidence 34477999999655 8999999999999999888776 58999999999999999999855545 459999874
Q ss_pred Ccccccccc-c----CC-----CCCcceeeee-----------Cccc--h-hhcCCccceeeeeeeeecCCCCcceEEEE
Q 044877 108 TTKTGFNGR-M----GN-----KIAAPRLLKL-----------TPLD--S-HLAGVNNKFHKAQFSWVTENGKQERHLVA 163 (244)
Q Consensus 108 ~~~~GF~~~-~----~~-----~kp~pr~L~L-----------~Pe~--~-~~~G~~~~Ft~akFn~~tg~~~~E~~Ivt 163 (244)
.|+++. + .+ =-|.-+.|-- -|+. . .+.|+..+-|.++|. + + +++...+
T Consensus 137 ---tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~--p-d--GKr~~tg 208 (399)
T KOG0296|consen 137 ---TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI--P-D--GKRILTG 208 (399)
T ss_pred ---cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc--C-C--CceEEEE
Confidence 234432 1 10 0122222210 1110 0 456888888888997 2 2 7999999
Q ss_pred eeCCeEEEEechh
Q 044877 164 TVGKFSVIWNFQQ 176 (244)
Q Consensus 164 StG~fvvvWn~~k 176 (244)
..+.-+++||.+.
T Consensus 209 y~dgti~~Wn~kt 221 (399)
T KOG0296|consen 209 YDDGTIIVWNPKT 221 (399)
T ss_pred ecCceEEEEecCC
Confidence 9999999999864
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.49 E-value=1.4e-06 Score=85.14 Aligned_cols=140 Identities=16% Similarity=0.248 Sum_probs=95.9
Q ss_pred cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877 25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF 102 (244)
Q Consensus 25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~ 102 (244)
+.-.++.++||++.+.+|. ||+|+.||.+|+|+..+. .+. .|--|..||.+|-.+.+|.|||+.. ++++.|||..-
T Consensus 230 ~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~-tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LIS-TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred ccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhh-hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 4456678899999999999 999999999999999654 566 4677999999999999999999887 68999999832
Q ss_pred ccCCCCcccccc--cc------------cCC--CCCcceeeeeC---ccchhhcCCccceeeeeeeeecCCCCcceEEEE
Q 044877 103 TDKNGTTKTGFN--GR------------MGN--KIAAPRLLKLT---PLDSHLAGVNNKFHKAQFSWVTENGKQERHLVA 163 (244)
Q Consensus 103 ~~~~~~~~~GF~--~~------------~~~--~kp~pr~L~L~---Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~Ivt 163 (244)
.. -+.=|+ .. |.- -+..=+..+|- |. -++.||...-.--+||. .+.-...+
T Consensus 308 g~----~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~-~t~~GH~g~V~alk~n~-----tg~LLaS~ 377 (524)
T KOG0273|consen 308 GT----VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPV-KTFIGHHGEVNALKWNP-----TGSLLASC 377 (524)
T ss_pred ce----EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcc-eeeecccCceEEEEECC-----CCceEEEe
Confidence 11 011111 10 000 00001112211 10 14566554444448883 35788999
Q ss_pred eeCCeEEEEechh
Q 044877 164 TVGKFSVIWNFQQ 176 (244)
Q Consensus 164 StG~fvvvWn~~k 176 (244)
|.+.-+-+|+..+
T Consensus 378 SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQ 390 (524)
T ss_pred cCCCeeEeeecCC
Confidence 9999999999654
No 41
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.48 E-value=1.4e-06 Score=89.39 Aligned_cols=123 Identities=15% Similarity=0.254 Sum_probs=86.1
Q ss_pred cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEecccc-----------------------------------------c
Q 044877 25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSM-----------------------------------------R 62 (244)
Q Consensus 25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~-----------------------------------------r 62 (244)
+.++-+.+.+.+|++.-++ +++++.+|.+..||..+. +
T Consensus 488 ~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k 567 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK 567 (910)
T ss_pred cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh
Confidence 4568888899999998776 889999999888887421 2
Q ss_pred cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCcc
Q 044877 63 QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNN 141 (244)
Q Consensus 63 ~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~ 141 (244)
.++ .|-|||+.|+.++||||||||+++|+ .+|++||.- ...++- .... +.
T Consensus 568 vvR-~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp---------------------t~~lID-----~~~v--d~ 618 (910)
T KOG1539|consen 568 VVR-EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP---------------------TGTLID-----GLLV--DS 618 (910)
T ss_pred hhH-HhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc---------------------Ccceee-----eEec--CC
Confidence 445 46899999999999999999999996 889999962 211221 0011 11
Q ss_pred ceeeeeeeeecCCCCcceEEEEeeC-CeEEEEechhhhcCC
Q 044877 142 KFHKAQFSWVTENGKQERHLVATVG-KFSVIWNFQQVKNGS 181 (244)
Q Consensus 142 ~Ft~akFn~~tg~~~~E~~IvtStG-~fvvvWn~~kV~~g~ 181 (244)
--+.-.|+. .+.-..++..| .=++.|.=+..-++.
T Consensus 619 ~~~sls~SP-----ngD~LAT~Hvd~~gIylWsNkslF~~v 654 (910)
T KOG1539|consen 619 PCTSLSFSP-----NGDFLATVHVDQNGIYLWSNKSLFKSV 654 (910)
T ss_pred cceeeEECC-----CCCEEEEEEecCceEEEEEchhHheec
Confidence 112235652 24677777777 889999766655443
No 42
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.9e-06 Score=79.10 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=63.1
Q ss_pred EEEecCCCc-EEEeCCCCcEEEEeccccccc--eecCC--CCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877 35 CFASTGDGS-IVVGSLDGKIRLYSSNSMRQA--KTAFP--GLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT 108 (244)
Q Consensus 35 ~vats~~G~-IavGS~dG~IRLyD~~~~r~a--Kt~lp--glGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~ 108 (244)
++|.+|+|- .|+|+..+.|+|||.+..... .|+.. +.-...+.|-+|||||+||.++. +.+.|+|+-- |.
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~----G~ 220 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD----GT 220 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC----Cc
Confidence 444555554 344444445555555432111 11111 23457899999999999997775 6699999732 22
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccce---eeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKF---HKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~F---t~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
-+..|+ +++..+ -.|.|. + ..+-++++|.+..+.+||++
T Consensus 221 ~~~tfs-----------------------~~~~~~~~~~~a~ft--P---ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 221 VKSTFS-----------------------GYPNAGNLPLSATFT--P---DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred EeeeEe-----------------------eccCCCCcceeEEEC--C---CCcEEEEecCCCcEEEEEcC
Confidence 222222 221111 134564 2 26888899999999999993
No 43
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.43 E-value=4.8e-07 Score=85.24 Aligned_cols=118 Identities=23% Similarity=0.293 Sum_probs=88.2
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCC-CCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCc
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGL-GSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTT 109 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~ 109 (244)
+++|.-++.|. -++||.||.|||||....||..|.-..| |..|.+.-||.||+|||+.-+ +.+.||+..
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~-------- 335 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS-------- 335 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec--------
Confidence 78999999999 5899999999999999999888766666 479999999999999998875 669999963
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCC----ccc-eeeeeeeeecCCCCcceEEEEe-eCCeEEEEechhhhcCCc
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGV----NNK-FHKAQFSWVTENGKQERHLVAT-VGKFSVIWNFQQVKNGSH 182 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~----~~~-Ft~akFn~~tg~~~~E~~IvtS-tG~fvvvWn~~kV~~g~~ 182 (244)
..|.|+ .|+|. ... =|.|-||.. .+.++.-- .-.-++.||-+.--+-.+
T Consensus 336 -------------t~R~l~------~YtGAg~tgrq~~rtqAvFNht-----EdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 336 -------------TGRMLK------EYTGAGTTGRQKHRTQAVFNHT-----EDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred -------------CCceEE------EEecCCcccchhhhhhhhhcCc-----cceEEccccccCceeeccccchhhhhh
Confidence 346777 67664 122 345688842 34444321 224578999887655444
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.43 E-value=2e-06 Score=79.28 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=87.6
Q ss_pred eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCcccc
Q 044877 33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTG 112 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~G 112 (244)
=+.+=++++-+|.+.+.|+.|||||.+++...++ |. +..||+++-+|+||++|..+--..+.+||..- .|
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s-L~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks--------f~ 216 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS-LE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS--------FG 216 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCcEEEE-Ee-cCCCCcceeeccCCCEEEEecCceeEEecccc--------cc
Confidence 4566678887899999999999999999988875 44 89999999999999998666668899999742 22
Q ss_pred cccccCCCCCcc-eeeeeCccchhh---------------cCCcc-ce--------eeeeeeeecCCCCcceEEEEeeCC
Q 044877 113 FNGRMGNKIAAP-RLLKLTPLDSHL---------------AGVNN-KF--------HKAQFSWVTENGKQERHLVATVGK 167 (244)
Q Consensus 113 F~~~~~~~kp~p-r~L~L~Pe~~~~---------------~G~~~-~F--------t~akFn~~tg~~~~E~~IvtStG~ 167 (244)
-.++. +.|.. ---.|+|++-.+ +|..+ .| ..-+|+ + .+|-..++|.+.
T Consensus 217 ~lKs~--k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS--P---dGE~yAsGSEDG 289 (334)
T KOG0278|consen 217 LLKSY--KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS--P---DGELYASGSEDG 289 (334)
T ss_pred ceeec--cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC--C---CCceeeccCCCc
Confidence 22221 11111 112466766322 22221 11 122665 2 269999999999
Q ss_pred eEEEEechh
Q 044877 168 FSVIWNFQQ 176 (244)
Q Consensus 168 fvvvWn~~k 176 (244)
-+.+|-.--
T Consensus 290 TirlWQt~~ 298 (334)
T KOG0278|consen 290 TIRLWQTTP 298 (334)
T ss_pred eEEEEEecC
Confidence 999997644
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.42 E-value=8.3e-07 Score=87.64 Aligned_cols=150 Identities=20% Similarity=0.297 Sum_probs=101.5
Q ss_pred CCceecccccccCCCC--------ceeEEEecCC--CcEEEeCCCCcEEEEeccccc----cceecCC-CCCCCeeEEEe
Q 044877 16 APVLNWSQGHQFSRGT--------NFQCFASTGD--GSIVVGSLDGKIRLYSSNSMR----QAKTAFP-GLGSPIRYVDV 80 (244)
Q Consensus 16 ~~~~~~~~~k~Y~~~~--------~Ft~vats~~--G~IavGS~dG~IRLyD~~~~r----~aKt~lp-glGdPI~~vdv 80 (244)
..++..+-+-||-++. ..+|+..+|. +.+.++|.||.+|+||....+ .-|+... |..-|+++-.+
T Consensus 246 ~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 246 FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeec
Confidence 3345556677885443 3788999994 449999999999999996433 1233322 34469999999
Q ss_pred CCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcce
Q 044877 81 TYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQER 159 (244)
Q Consensus 81 S~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~ 159 (244)
++||+||+|.|. ..|.+||..- . |.+ |. .++ -++|.-|..+ |+-.|+. + +..
T Consensus 326 nrdg~~iAagc~DGSIQ~W~~~~---~------~v~------p~-~~v----k~AH~~g~~I--tsi~FS~---d--g~~ 378 (641)
T KOG0772|consen 326 NRDGKLIAAGCLDGSIQIWDKGS---R------TVR------PV-MKV----KDAHLPGQDI--TSISFSY---D--GNY 378 (641)
T ss_pred CCCcchhhhcccCCceeeeecCC---c------ccc------cc-eEe----eeccCCCCce--eEEEecc---c--cch
Confidence 999999999996 7799999620 0 221 11 112 2345555444 6778883 2 578
Q ss_pred EEEEeeCCeEEEEechhhhcCCccccccccCCceeee
Q 044877 160 HLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYC 196 (244)
Q Consensus 160 ~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~ 196 (244)
+..-+.+.-+-+|||++-++--. ...||.+-|+
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~----~~tgL~t~~~ 411 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLN----VRTGLPTPFP 411 (641)
T ss_pred hhhccCCCceeeeeccccccchh----hhcCCCccCC
Confidence 89999999999999988765433 2345555444
No 46
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=3.2e-06 Score=78.94 Aligned_cols=117 Identities=20% Similarity=0.318 Sum_probs=88.6
Q ss_pred ccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877 26 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD 104 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~ 104 (244)
.|..+.+..+.++.++-+|++|+.||.||+||..++. -..+-.|..||.+|..++--..+++++ +.+|.+||.+.+-
T Consensus 50 ~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 50 KFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred heecCCceeeeeccCCceEEEeccCceEEEEEecCCc--ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 4788899999999998789999999999999997653 224567899999999998888888998 5889999986311
Q ss_pred CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877 105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~ 179 (244)
.. .+|. .++ +-... +-.+++.||+..++.|.+||++....
T Consensus 128 ~~----~~~d----------------------~~k-----kVy~~----~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 128 VV----GTFD----------------------QGK-----KVYCM----DVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred cc----cccc----------------------cCc-----eEEEE----eccCCEEEEeecCceEEEEEcccccc
Confidence 00 0111 111 22222 12369999999999999999987653
No 47
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.40 E-value=2.6e-06 Score=83.09 Aligned_cols=109 Identities=18% Similarity=0.274 Sum_probs=81.0
Q ss_pred eeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCcc
Q 044877 33 FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTK 110 (244)
Q Consensus 33 Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~ 110 (244)
..|.+++| +++ +++||.||.|||||.+... .+-.--.||.||.+|.+-|.|..|+++.=+.+++||..-.
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G------- 227 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTG------- 227 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCC-------
Confidence 57899998 666 8999999999999997652 2222235999999999999999986666789999997521
Q ss_pred cccccccCCCCCcceeeeeCccchhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 111 TGFNGRMGNKIAAPRLLKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
.+.|. .+. |.=.-|+-++. . + +.+.+++|-+..|-++|.
T Consensus 228 -------------~qll~-------~~~~H~KtVTcL~l~--s-~--~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 228 -------------GQLLT-------SMFNHNKTVTCLRLA--S-D--STRLLSGSLDRHVKVFDT 267 (487)
T ss_pred -------------ceehh-------hhhcccceEEEEEee--c-C--CceEeecccccceEEEEc
Confidence 11222 222 33345777887 2 2 589999999999999984
No 48
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.40 E-value=3.7e-06 Score=81.47 Aligned_cols=123 Identities=18% Similarity=0.287 Sum_probs=95.7
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEe-CCcceEEEEeeec
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGT-TDTYLILICTLFT 103 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~~L~L~dt~~~ 103 (244)
...+.+.-+.+|++|. +|+||.|-..-+|+..-.. ..+-+|.||..||..|.+|||.+||||. ++..|.|||+.-+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 3455677889999997 9999999999888874322 2344578999999999999999999854 4677999998532
Q ss_pred cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCC
Q 044877 104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGS 181 (244)
Q Consensus 104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~ 181 (244)
| +. +.+++.+.|+..-+-|.+ + +-+.|++|.++-++-||+.-=+.+.
T Consensus 302 d----------------------~~------~~y~~~~~~S~~sc~W~p-D--g~~~V~Gs~dr~i~~wdlDgn~~~~ 348 (519)
T KOG0293|consen 302 D----------------------LR------HLYPSGLGFSVSSCAWCP-D--GFRFVTGSPDRTIIMWDLDGNILGN 348 (519)
T ss_pred h----------------------hh------hhcccCcCCCcceeEEcc-C--CceeEecCCCCcEEEecCCcchhhc
Confidence 2 11 455555788889999986 3 5779999999999999997655443
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.38 E-value=1.5e-06 Score=83.69 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=96.1
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccC
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDK 105 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~ 105 (244)
+....+.++|++|+.. .+++|.||.||+||....+... .|-|+|.-|+++|..|---.|++.++ +.+.|||++-
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS--- 253 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--- 253 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCCccceeEEccCCceeEeecCCC---
Confidence 3446689999999665 9999999999999997665555 56899999999999999999988886 7799999852
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
..+|. ++.+|.+.-...+|+- .+.-...+|-+..+-++|.+.
T Consensus 254 ------------------g~cl~------tlh~HKntVl~~~f~~-----n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 254 ------------------GSCLA------TLHGHKNTVLAVKFNP-----NGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred ------------------cchhh------hhhhccceEEEEEEcC-----CCCeeEEccCCceEEEEehhH
Confidence 34555 7888888888999992 247888899999999999883
No 50
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.35 E-value=4.1e-06 Score=78.22 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=60.7
Q ss_pred eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEE-eCCcceEEEEee
Q 044877 33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILG-TTDTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLa-T~~~~L~L~dt~ 101 (244)
.+|..+..+++|++||-|.++-|||..++++. +.+-||...|.+|+++| |+++.++ .|+.+-+|||.+
T Consensus 148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred eEEEEEcCCCceEecCCCceEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence 57888888999999999999999999988644 46789999999999999 9999985 479999999985
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.35 E-value=3.4e-06 Score=81.72 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=93.0
Q ss_pred ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeec
Q 044877 26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFT 103 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~ 103 (244)
+|.+.....++|.|+||. +++-..|-.||+|+....-.-+ +-...+||+++++|.||+++|.+-. ..|.|||..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~--lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~-- 425 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG--LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE-- 425 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhc--cccccCceeEEEEcCCCcEEEEEcccCeeEEeecc--
Confidence 466777799999999998 7777799999999985432221 3457899999999999999999975 779999963
Q ss_pred cCCCCcccccccccCCCCCcceeeeeCccchhhcCCcc-ceeee-eeeeecCCCCcceEEEEeeCCeEEEEechh-----
Q 044877 104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNN-KFHKA-QFSWVTENGKQERHLVATVGKFSVIWNFQQ----- 176 (244)
Q Consensus 104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~-~Ft~a-kFn~~tg~~~~E~~IvtStG~fvvvWn~~k----- 176 (244)
-+++.+ .|+|+.. +|.=. .|- .+...-+.++|.+.-|++|+-+.
T Consensus 426 -------------------e~~lv~------kY~Ghkq~~fiIrSCFg----g~~~~fiaSGSED~kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 426 -------------------ENKLVR------KYFGHKQGHFIIRSCFG----GGNDKFIASGSEDSKVYIWHRISGKLLA 476 (519)
T ss_pred -------------------hhhHHH------HhhcccccceEEEeccC----CCCcceEEecCCCceEEEEEccCCceeE
Confidence 234555 7889875 44433 553 33356777899999999999764
Q ss_pred hhcCCc
Q 044877 177 VKNGSH 182 (244)
Q Consensus 177 V~~g~~ 182 (244)
++.|..
T Consensus 477 ~LsGHs 482 (519)
T KOG0293|consen 477 VLSGHS 482 (519)
T ss_pred eecCCc
Confidence 555554
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.34 E-value=2.3e-06 Score=83.56 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=97.7
Q ss_pred ccCCCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 26 QFSRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
.+.++-.-+||-++|+++ +.+|..||.||.||.++++... ....+-.+|..|.|-++|+..+++++ +++++|+-.+
T Consensus 295 ~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq-eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~ 373 (503)
T KOG0282|consen 295 RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ-EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI 373 (503)
T ss_pred EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH-HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC
Confidence 356667789999999984 8999999999999998877555 35667779999999999999999996 7799999765
Q ss_pred ccCCCCcccccccccCCCCCcceeeeeCccch--------------------------hhcCCcc-ceee-eeeeeecCC
Q 044877 103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDS--------------------------HLAGVNN-KFHK-AQFSWVTEN 154 (244)
Q Consensus 103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~--------------------------~~~G~~~-~Ft~-akFn~~tg~ 154 (244)
.-. - -|... ...=.-.++.++|.+= .+.|+.. .+.. -.|+ +
T Consensus 374 ~v~-i----k~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS--p-- 442 (503)
T KOG0282|consen 374 PVP-I----KNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS--P-- 442 (503)
T ss_pred Ccc-c----hhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc--C--
Confidence 210 0 00000 0001123445555431 1223322 1111 1455 2
Q ss_pred CCcceEEEEeeCCeEEEEechhhhcC
Q 044877 155 GKQERHLVATVGKFSVIWNFQQVKNG 180 (244)
Q Consensus 155 ~~~E~~IvtStG~fvvvWn~~kV~~g 180 (244)
.++.++.++++.-+..||.+..+.=
T Consensus 443 -DG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 443 -DGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred -CCCeEEeecCCccEEEeechhhhhh
Confidence 3799999999999999999988743
No 53
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.33 E-value=7.6e-06 Score=83.66 Aligned_cols=127 Identities=15% Similarity=0.287 Sum_probs=87.6
Q ss_pred ecccccccCC--CCceeEEEecCCCcE-EEeCCCC-cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccc
Q 044877 20 NWSQGHQFSR--GTNFQCFASTGDGSI-VVGSLDG-KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTY 94 (244)
Q Consensus 20 ~~~~~k~Y~~--~~~Ft~vats~~G~I-avGS~dG-~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~ 94 (244)
+|--++.|.+ ..+|+|+|.+|.|.| .+|+.|- +|.+|+..+++ ....|-||-.||.+++++|+|..|++.+ +++
T Consensus 423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT 501 (893)
T KOG0291|consen 423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKT 501 (893)
T ss_pred ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccce
Confidence 3444555543 456999999999994 5555554 69999999986 5567899999999999999999888777 588
Q ss_pred eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 95 LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 95 L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
+|+||.. .++ ..-.-|++. .--+.-.|. + + ++++.|++-+.-+-.||.
T Consensus 502 VRiW~if------------~s~-----~~vEtl~i~----------sdvl~vsfr--P-d--G~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 502 VRIWDIF------------SSS-----GTVETLEIR----------SDVLAVSFR--P-D--GKELAVATLDGQITFFDI 549 (893)
T ss_pred EEEEEee------------ccC-----ceeeeEeec----------cceeEEEEc--C-C--CCeEEEEEecceEEEEEh
Confidence 9999974 210 111122211 111223454 2 2 567777777778889998
Q ss_pred hhhhc
Q 044877 175 QQVKN 179 (244)
Q Consensus 175 ~kV~~ 179 (244)
+.-.+
T Consensus 550 ~~~~q 554 (893)
T KOG0291|consen 550 KEAVQ 554 (893)
T ss_pred hhcee
Confidence 86553
No 54
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=1.9e-06 Score=82.68 Aligned_cols=67 Identities=21% Similarity=0.305 Sum_probs=58.6
Q ss_pred eEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877 34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL 101 (244)
Q Consensus 34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~ 101 (244)
-+||++.+|. +|+|..||.+|+|+-..+.... .++.++..|..++|||||++|++.+.+..++|++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-EEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-hhHhhcCccccceeCCCCcEEEEecCCceEEEEec
Confidence 6999999987 9999999999999966554444 35779999999999999999998887799999985
No 55
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.30 E-value=4.9e-06 Score=84.24 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=92.9
Q ss_pred eecc-cccccCCCCceeEEEecCCCc-EEEeCCC-----CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877 19 LNWS-QGHQFSRGTNFQCFASTGDGS-IVVGSLD-----GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91 (244)
Q Consensus 19 ~~~~-~~k~Y~~~~~Ft~vats~~G~-IavGS~d-----G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~ 91 (244)
+.|- +.|-|.-++...|++.+++|. ||++..- -.||||...+-.+.+ .|++|.-.||.|.+||||+|||+.|
T Consensus 513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLTVT~l~FSpdg~~LLsvs 591 (764)
T KOG1063|consen 513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLTVTRLAFSPDGRYLLSVS 591 (764)
T ss_pred ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceEEEEEEECCCCcEEEEee
Confidence 3454 467899999999999999999 5655543 459999997765444 6899999999999999999999999
Q ss_pred C-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcce-EEEEeeCCeE
Q 044877 92 D-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQER-HLVATVGKFS 169 (244)
Q Consensus 92 ~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~-~IvtStG~fv 169 (244)
+ .+.-||..+- +.+ ++-+|..-|+-.|++= -++|.+ .|. ...+|-+++|
T Consensus 592 RDRt~sl~~~~~-~~~------~e~~fa~~k~HtRIIW------------------dcsW~p----de~~FaTaSRDK~V 642 (764)
T KOG1063|consen 592 RDRTVSLYEVQE-DIK------DEFRFACLKAHTRIIW------------------DCSWSP----DEKYFATASRDKKV 642 (764)
T ss_pred cCceEEeeeeec-ccc------hhhhhccccccceEEE------------------EcccCc----ccceeEEecCCceE
Confidence 6 6688998632 111 2222433333333222 356643 244 8889999999
Q ss_pred EEEechhh
Q 044877 170 VIWNFQQV 177 (244)
Q Consensus 170 vvWn~~kV 177 (244)
++|...+-
T Consensus 643 kVW~~~~~ 650 (764)
T KOG1063|consen 643 KVWEEPDL 650 (764)
T ss_pred EEEeccCc
Confidence 99987654
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.30 E-value=1.2e-06 Score=86.50 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=58.5
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEE
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILIC 99 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~d 99 (244)
..+.+.++.+.+++|. ||+|..||.|.+||..+.- .-+-+++ |..|++|.||+||++||+-. +++|+|||
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~--g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP--GQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC--CCceeEEEeccccchhhhccCCCceeeee
Confidence 3567889999999998 9999999999999974221 1111222 55899999999999999887 79999999
Q ss_pred eee
Q 044877 100 TLF 102 (244)
Q Consensus 100 t~~ 102 (244)
.+.
T Consensus 393 Lrq 395 (641)
T KOG0772|consen 393 LRQ 395 (641)
T ss_pred ccc
Confidence 865
No 57
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.29 E-value=4.9e-06 Score=79.27 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=74.9
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCC
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIA 122 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp 122 (244)
+++||-|+.||+||..++++.-| |-||+.=|.+++++|-|+||++..+ ++|++||.+
T Consensus 307 l~s~SrDktIk~wdv~tg~cL~t-L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~--------------------- 364 (406)
T KOG0295|consen 307 LGSGSRDKTIKIWDVSTGMCLFT-LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK--------------------- 364 (406)
T ss_pred EEeecccceEEEEeccCCeEEEE-EecccceeeeeEEcCCCeEEEEEecCCcEEEEEec---------------------
Confidence 89999999999999999988875 6889999999999999999998775 889999974
Q ss_pred cceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 123 APRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 123 ~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
.-++++-.|.|.++. +.--|. .....+|.+|.+.-+-+|-
T Consensus 365 ~~~cmk~~~ah~hfv------t~lDfh-----~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 365 NLQCMKTLEAHEHFV------TSLDFH-----KTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeccCCCccee------EEEecC-----CCCceEEeccccceeeeee
Confidence 235555444433332 233443 1245888889888888884
No 58
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.26 E-value=9.4e-06 Score=77.67 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=99.0
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcc
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTK 110 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~ 110 (244)
+.||++.|..+ +++||.|+.|++||..++ +.|.+|+||-..+.+|.||+---|+.+..+ ..+.-||.... +
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n----k-- 226 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN----K-- 226 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh----h--
Confidence 78999999655 999999999999999998 589999999999999999999999998875 67999997531 1
Q ss_pred cccccccCCCCCcceeeeeCccc-h----------------------hhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877 111 TGFNGRMGNKIAAPRLLKLTPLD-S----------------------HLAGVNNKFHKAQFSWVTENGKQERHLVATVGK 167 (244)
Q Consensus 111 ~GF~~~~~~~kp~pr~L~L~Pe~-~----------------------~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~ 167 (244)
|-+..-.---.-++|.|+|-. + .+.||......-.|+- .+..+|.+|.+.
T Consensus 227 --vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~-----~dpqvit~S~D~ 299 (460)
T KOG0285|consen 227 --VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP-----TDPQVITGSHDS 299 (460)
T ss_pred --hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec-----CCCceEEecCCc
Confidence 221110011234677777733 2 2356666556667762 257899999999
Q ss_pred eEEEEechh
Q 044877 168 FSVIWNFQQ 176 (244)
Q Consensus 168 fvvvWn~~k 176 (244)
-|-.||+..
T Consensus 300 tvrlWDl~a 308 (460)
T KOG0285|consen 300 TVRLWDLRA 308 (460)
T ss_pred eEEEeeecc
Confidence 999999975
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.26 E-value=5.7e-06 Score=84.55 Aligned_cols=116 Identities=17% Similarity=0.312 Sum_probs=92.3
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccC
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDK 105 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~ 105 (244)
+.+.+.||+..+++.. +|+|=.||.||+||..+.. .-..+.||...|+-+.+..+|..|++.++ +-|.+||..-..
T Consensus 63 ~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~- 140 (888)
T KOG0306|consen 63 KKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE- 140 (888)
T ss_pred cccceEEEeeccCCcceEEEEecCceEEeeccCCCc-eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-
Confidence 3445799999999886 8999999999999997553 33357899999999999999999999996 559999975210
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
-+. .+-||+-.-|.+.|. + ...-+|++|.+.++-.||++.
T Consensus 141 -------------------Gl~-------rL~GHkd~iT~~~F~--~---~~~~lvS~sKDs~iK~WdL~t 180 (888)
T KOG0306|consen 141 -------------------GLF-------RLRGHKDSITQALFL--N---GDSFLVSVSKDSMIKFWDLET 180 (888)
T ss_pred -------------------eeE-------EeecchHHHhHHhcc--C---CCeEEEEeccCceEEEEeccc
Confidence 112 255877778889997 2 246788899999999999864
No 60
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.23 E-value=1.5e-05 Score=74.59 Aligned_cols=152 Identities=14% Similarity=0.181 Sum_probs=100.7
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc--C
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD--K 105 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~--~ 105 (244)
+-.+-++.++|+|. +|+|+.|-.|-||..-+...-.-.+.||...|.+|..++||..|++.. +++++.||..... .
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 44577899999997 999999999999997543222224679999999999999999999664 7999999987543 2
Q ss_pred CCCcccccccccCCCCCcceeeeeCccc-------hhhcCC----ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLD-------SHLAGV----NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~-------~~~~G~----~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
+-++-.+|..++.-.+-.|-++.=-..| +.-.+. +.++.---|.|. ++.+++|++-.++-+-+||+
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~---d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFK---DTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEec---ccccceeeccccCceeeecc
Confidence 3445567777765211222233211111 110010 112222234442 45799999999999999999
Q ss_pred hh-----hhcCCccc
Q 044877 175 QQ-----VKNGSHEC 184 (244)
Q Consensus 175 ~k-----V~~g~~~~ 184 (244)
++ ++.|..|+
T Consensus 204 r~~d~~~~lsGh~Dt 218 (338)
T KOG0265|consen 204 RKNDGLYTLSGHADT 218 (338)
T ss_pred ccCcceEEeecccCc
Confidence 54 55666653
No 61
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.19 E-value=1.1e-05 Score=82.14 Aligned_cols=116 Identities=16% Similarity=0.322 Sum_probs=96.2
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK 105 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~ 105 (244)
+-..++.||+.+|+.. ||+||.|-..++|+....+-+- .|-||.--|-+|.|+|..+.++..+ +.+|+||...-
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~-vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~--- 536 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG-VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST--- 536 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCceEEE-EeeCCccceEEEEeccccceeEeccCCceEEEEEecc---
Confidence 4456689999999877 9999999999999998655444 5789999999999999999774333 68999998642
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
|. +|+ ++-||.-.--+|.|- ..++..|++..+..+-+||.++
T Consensus 537 -------fS-----------Clk------T~eGH~~aVlra~F~-----~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 537 -------FS-----------CLK------TFEGHTSAVLRASFI-----RNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred -------ce-----------eee------eecCccceeEeeeee-----eCCcEEEeccCCCcEEEEeccc
Confidence 44 788 899998777788886 2379999999999999999875
No 62
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.18 E-value=1.5e-05 Score=76.31 Aligned_cols=135 Identities=17% Similarity=0.222 Sum_probs=89.2
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeCCcceEEEEeeeccCCCCc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTTDTYLILICTLFTDKNGTT 109 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~~~~L~L~dt~~~~~~~~~ 109 (244)
-+-|++++|.-. |++|+.|-.||+||.++.... ..|.||..||.+|.+.| |++-+-+..+.+|+|||... ++ ..
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V-~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a--gk-t~ 312 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV-HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA--GK-TM 312 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccceE-EEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc--Cc-ee
Confidence 367999999655 999999999999999886444 46899999999998884 67655444578999999753 11 11
Q ss_pred ccccccccCCCCCcceeeeeCccchhhc-CCccceeee-----ee-----------eeecCCCCcceEEEEeeCCeEEEE
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKFHKA-----QF-----------SWVTENGKQERHLVATVGKFSVIW 172 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~Ft~a-----kF-----------n~~tg~~~~E~~IvtStG~fvvvW 172 (244)
..+| ..|..-|.|.|+|.+-.++ +.+.+|..= .| |.- ..++....++++...-+..|
T Consensus 313 ~tlt-----~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl-~~nsD~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 313 ITLT-----HHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTL-SVNSDGVLVSGGDNGSIMFW 386 (460)
T ss_pred Eeee-----cccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeee-eeccCceEEEcCCceEEEEE
Confidence 1222 3456789999999775443 223333221 11 211 12334445556666667788
Q ss_pred echh
Q 044877 173 NFQQ 176 (244)
Q Consensus 173 n~~k 176 (244)
|.+.
T Consensus 387 dwks 390 (460)
T KOG0285|consen 387 DWKS 390 (460)
T ss_pred ecCc
Confidence 8764
No 63
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.16 E-value=6.5e-06 Score=79.43 Aligned_cols=116 Identities=19% Similarity=0.341 Sum_probs=86.8
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNG 107 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~ 107 (244)
+-.+..|..+|+|. |++||..|+..||...+. +-+|.+..|-+||..+..|+||.|+|+... .+|..|+....+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--- 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--- 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCcee-eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---
Confidence 33466788899998 999999999999999877 478888999999999999999999999986 889999964321
Q ss_pred CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
.++ ...-+.-.-+...|+. .....+.+|.++-+-+|||..-+
T Consensus 172 -------------------Vk~-----~~ahh~eaIRdlafSp-----nDskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 172 -------------------VKI-----IQAHHAEAIRDLAFSP-----NDSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred -------------------hHH-----hhHhhhhhhheeccCC-----CCceeEEecCCCeEEEEeccCCc
Confidence 000 1111112233445551 25778889999999999995433
No 64
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.15 E-value=1.2e-05 Score=77.65 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=80.9
Q ss_pred eeEEEecC-CC-cEEEeCCCCcEEEEeccc--cccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCC
Q 044877 33 FQCFASTG-DG-SIVVGSLDGKIRLYSSNS--MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKN 106 (244)
Q Consensus 33 Ft~vats~-~G-~IavGS~dG~IRLyD~~~--~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~ 106 (244)
..=|+.++ +- -+++.+.||.+-|||.++ .+..+ ..+++..+|.+++|.|=+.|||||+ +++|.|||.+
T Consensus 230 VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~-~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlR----- 303 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH-SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLR----- 303 (422)
T ss_pred eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc-cccccCCceeEEEeCCCCCceEEeccCCCcEEEeech-----
Confidence 34456666 22 389999999999999984 43334 4678999999999999999999996 6999999964
Q ss_pred CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceE-EEEeeCCeEEEEechhhhcCC
Q 044877 107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERH-LVATVGKFSVIWNFQQVKNGS 181 (244)
Q Consensus 107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~-IvtStG~fvvvWn~~kV~~g~ 181 (244)
-|.. |-| ++.|+.-.-..-.|+ +. .|++ .++++++.+.+||+.+|-.-+
T Consensus 304 -------------------nL~~-~lh-~~e~H~dev~~V~WS--Ph---~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 304 -------------------NLNK-PLH-TFEGHEDEVFQVEWS--PH---NETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred -------------------hccc-Cce-eccCCCcceEEEEeC--CC---CCceeEecccCCcEEEEecccccccc
Confidence 1221 111 355554333334444 42 3444 344578999999999997554
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=1.7e-05 Score=82.45 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=104.2
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT 108 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~ 108 (244)
-+...|++++.+- .++|+.|=.||+|.-...|+.-| |-||-|-|..+.|.+.==|||++++ .+||+|+-+
T Consensus 52 GpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft-L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq------- 123 (1202)
T KOG0292|consen 52 GPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT-LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ------- 123 (1202)
T ss_pred CccceeeecCCCCeEEecCCccEEEEEecccceehhh-hccccceeEEeeccCCCceEEEccCCCeEEEEecc-------
Confidence 4678999999987 79999999999999988887774 6789999999999999999999996 889999964
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccc
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHEC 184 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~ 184 (244)
.-.++. .++||+|-.-.|+|.. ..+.++++|-+.-|=+||..-..+++..+
T Consensus 124 --------------sr~~ia------vltGHnHYVMcAqFhp-----tEDlIVSaSLDQTVRVWDisGLRkk~~~p 174 (1202)
T KOG0292|consen 124 --------------SRKCIA------VLTGHNHYVMCAQFHP-----TEDLIVSASLDQTVRVWDISGLRKKNKAP 174 (1202)
T ss_pred --------------CCceEE------EEecCceEEEeeccCC-----ccceEEEecccceEEEEeecchhccCCCC
Confidence 224566 7899999888999982 36788999999999999999888777653
No 66
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.13 E-value=1e-05 Score=76.08 Aligned_cols=75 Identities=16% Similarity=0.325 Sum_probs=63.1
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCc-EEEEeccccccceecCCCC-CCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGK-IRLYSSNSMRQAKTAFPGL-GSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~-IRLyD~~~~r~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
+-.....||+.+-+|. ||++|.+|+ ||+||..++...+.+-.|. ...|-.|++|||+.||++.++ .+|.++-...
T Consensus 179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 5567799999999999 999999997 9999998776666544453 468999999999999999997 7799987653
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.11 E-value=3.9e-06 Score=80.94 Aligned_cols=169 Identities=18% Similarity=0.280 Sum_probs=122.3
Q ss_pred EEEecCC-CcEEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877 35 CFASTGD-GSIVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT 111 (244)
Q Consensus 35 ~vats~~-G~IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~ 111 (244)
.|.+-++ +.+++|+.|-.|.+|+..+.+. ..-.|-|-+.+|+++++.+|++++||.+ ++.++||+.-
T Consensus 180 ~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd---------- 249 (459)
T KOG0288|consen 180 DVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD---------- 249 (459)
T ss_pred eeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc----------
Confidence 4555554 6799999999999999987751 2335788899999999999999999887 5779999962
Q ss_pred ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCC
Q 044877 112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGL 191 (244)
Q Consensus 112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l 191 (244)
.-|.+. ++.||.-+.+.++|-.. ..++|.+|.+.-+-.||+.+.--.+ +=|
T Consensus 250 -----------~~r~~~------TLsGHtdkVt~ak~~~~-----~~~vVsgs~DRtiK~WDl~k~~C~k-------t~l 300 (459)
T KOG0288|consen 250 -----------SLRLRH------TLSGHTDKVTAAKFKLS-----HSRVVSGSADRTIKLWDLQKAYCSK-------TVL 300 (459)
T ss_pred -----------chhhhh------hhcccccceeeehhhcc-----ccceeeccccchhhhhhhhhhheec-------ccc
Confidence 123333 78899989999999832 2449999999999999999843333 235
Q ss_pred ceeeeeEEEecCccccccceecCccccCC--CCCCCEEEEcCCceeeeeecccC
Q 044877 192 KSCYCYKIVLKDDSIVDSRFMHDKFAVSD--LPEAPLVIATPMKVSSFSISSRQ 243 (244)
Q Consensus 192 ~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~--~~~~~iiva~~~~v~~~~~~~~~ 243 (244)
..-+|..|......++...| ..+-+|=| +++.-..|++--.|.++.++-.+
T Consensus 301 ~~S~cnDI~~~~~~~~SgH~-DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g 353 (459)
T KOG0288|consen 301 PGSQCNDIVCSISDVISGHF-DKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDG 353 (459)
T ss_pred ccccccceEecceeeeeccc-ccceEEEeccCCceeeEeecCcceeeEeeccCC
Confidence 55566667776555554432 33455532 34566678888888888876543
No 68
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.11 E-value=9.2e-06 Score=80.24 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=56.7
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEecc-ccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEE
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN-SMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILIC 99 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~-~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~d 99 (244)
+-+.++|+.+|+|. +|+||.|+.|.||... +++.-+-.=.-.|.||+|+|+|+|++||.+++-+| |+.|.
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 77899999999998 9999999999999874 22222111122469999999999999999999777 99994
No 69
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.08 E-value=7.5e-06 Score=84.26 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=58.0
Q ss_pred CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCC--CCCCeeEEEeCCCCCEEEEeC-C-cceEEEEe
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPG--LGSPIRYVDVTYDGRWILGTT-D-TYLILICT 100 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpg--lGdPI~~vdvS~DG~~lLaT~-~-~~L~L~dt 100 (244)
-.+..+..++||+|. |+++|.|+.||+||..++. ++++ +.+|+++|.+||+|.||+.+- + +.|-||-.
T Consensus 575 h~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~----lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 575 HGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT----LIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred cccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc----eeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 456799999999998 9999999999999998875 4454 568999999999999997554 3 77999975
No 70
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.07 E-value=3e-05 Score=72.72 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=83.5
Q ss_pred cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC--EEEEeC-CcceEEEEe
Q 044877 25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR--WILGTT-DTYLILICT 100 (244)
Q Consensus 25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~--~lLaT~-~~~L~L~dt 100 (244)
-++.-.-+..|++.+.+|. +++|+.||.+++||+.+.+..+ +-.|..||..+.+-+... +|+.++ +++|+.||+
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~--v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ--VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee--eeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 3456667889999999998 9999999999999998875333 556889999997775555 555556 699999998
Q ss_pred eeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
+. +.|.--.--||-+. ..+-..+..+|+..++-++++||+
T Consensus 145 R~-------------------~~pv~t~~LPeRvY----------------a~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 145 RS-------------------SNPVATLQLPERVY----------------AADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred CC-------------------CCeeeeeeccceee----------------ehhccCceeEEEecCCcEEEEEcC
Confidence 63 23322222233221 112346889999999999999993
No 71
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=1.1e-05 Score=83.00 Aligned_cols=68 Identities=26% Similarity=0.370 Sum_probs=55.3
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccc--------------------------------------------cceec
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMR--------------------------------------------QAKTA 67 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r--------------------------------------------~aKt~ 67 (244)
++|+++||+|. +|+|..||.|++|...+.. ..|++
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 68888888876 8888888888888775410 34889
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877 68 FPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT 100 (244)
Q Consensus 68 lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt 100 (244)
||.||.||+++.+|||+.....-| |+.|.|+..
T Consensus 288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 999999999999999999887555 677888875
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=3.8e-05 Score=70.85 Aligned_cols=130 Identities=17% Similarity=0.186 Sum_probs=94.6
Q ss_pred CCCceecccccccCCCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeC
Q 044877 15 GAPVLNWSQGHQFSRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTT 91 (244)
Q Consensus 15 ~~~~~~~~~~k~Y~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~ 91 (244)
+++-+.-.+. |-+..-.--|+-+++-. +++++-||.+||||......--..+..|...|.+||..+ +++-+|..+
T Consensus 47 ~~~gi~e~~s--~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS 124 (311)
T KOG0277|consen 47 DPKGIQECQS--YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS 124 (311)
T ss_pred CCCCeEEEEe--eecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec
Confidence 4555554444 77777788899999433 899999999999996322111112446888999999995 444455555
Q ss_pred -CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEE
Q 044877 92 -DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSV 170 (244)
Q Consensus 92 -~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvv 170 (244)
+.+|+||+... |.-|+ ++.|+...-..|.|+ +-. ..-...+|++.++=
T Consensus 125 WD~TiKLW~~~r---------------------~~Sv~------Tf~gh~~~Iy~a~~s--p~~--~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 125 WDGTIKLWDPNR---------------------PNSVQ------TFNGHNSCIYQAAFS--PHI--PNLFASASGDGTLR 173 (311)
T ss_pred cCCceEeecCCC---------------------CcceE------eecCCccEEEEEecC--CCC--CCeEEEccCCceEE
Confidence 68899999632 34555 688888777889999 323 68899999999999
Q ss_pred EEechhh
Q 044877 171 IWNFQQV 177 (244)
Q Consensus 171 vWn~~kV 177 (244)
+||++.-
T Consensus 174 lwdvr~~ 180 (311)
T KOG0277|consen 174 LWDVRSP 180 (311)
T ss_pred EEEecCC
Confidence 9998765
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.03 E-value=4.3e-05 Score=72.56 Aligned_cols=106 Identities=15% Similarity=0.269 Sum_probs=86.0
Q ss_pred CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccC
Q 044877 41 DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMG 118 (244)
Q Consensus 41 ~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~ 118 (244)
.|. +++||-|-.--|||..++.-.. .|-|+....+|.+..|.-+.++..+. ++.+|||-+.
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~-~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe---------------- 345 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVN-ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE---------------- 345 (481)
T ss_pred CcceeeeeeccccceeeeeccCceec-cccCcchhccccccCCcceEEEEeccCceeEeccchh----------------
Confidence 455 9999999999999998886444 68899999999999999999988884 7799999431
Q ss_pred CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877 119 NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 119 ~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~ 179 (244)
.+|. .. -|-||.-..|.+-|+ + +.+++.+|-+.-|-+|||+....
T Consensus 346 -aI~s---V~------VFQGHtdtVTS~vF~--~----dd~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 346 -AIQS---VA------VFQGHTDTVTSVVFN--T----DDRVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred -hcce---ee------eecccccceeEEEEe--c----CCceeecCCCceEEEeeeccccC
Confidence 1111 11 466888889999999 4 47899999999999999987653
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.03 E-value=2.8e-05 Score=73.53 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=86.7
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCC--CCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPG--LGSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpg--lGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
|.--.+++++.++|..+ +++||.|+.|+|||-..- -+|-++.- --.|+.+|.+.|.|.|||+.++ ..|+|||..-
T Consensus 169 YDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~-saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKT-SAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred hhccCcccceeecchhheEEeccCCCeEEEEecccH-HHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 66667899999999878 799999999999998532 23333332 3569999999999999999997 8899999742
Q ss_pred ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
--.|.. -.|.|.+- -.-+.-+++- .+...|.+|-+..+-+||=
T Consensus 248 -------~Qcfvs-------------anPd~qht----~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 248 -------YQCFVS-------------ANPDDQHT----GAITQVRYSS-----TGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred -------eeEeee-------------cCcccccc----cceeEEEecC-----CccEEEEeccCCcEEeecc
Confidence 122442 23444432 2334556662 2688999999999999983
No 75
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.02 E-value=1.2e-05 Score=76.85 Aligned_cols=117 Identities=17% Similarity=0.262 Sum_probs=78.5
Q ss_pred EEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877 35 CFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT 111 (244)
Q Consensus 35 ~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~ 111 (244)
.+|+-. .|. |++||.|..|||||...+.+.+ .|.||-+-|..|.| |.+-|++.. +..|++||-.-
T Consensus 362 GIAClQYr~rlvVSGSSDntIRlwdi~~G~cLR-vLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~a--------- 429 (499)
T KOG0281|consen 362 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA--------- 429 (499)
T ss_pred cceehhccCeEEEecCCCceEEEEeccccHHHH-HHhchHHhhhheee--cCceeeeccccceEEEEeccc---------
Confidence 345544 556 8999999999999998888777 68999999998887 667777665 78899999642
Q ss_pred ccccccCCCCC-cceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877 112 GFNGRMGNKIA-APRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180 (244)
Q Consensus 112 GF~~~~~~~kp-~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g 180 (244)
.+.-+.| ...+|. ++.-+.-..-.-.|+ .-++|..|-+.-+.+|||-.-...
T Consensus 430 ----aldpra~~~~~Cl~------~lv~hsgRVFrLQFD-------~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 430 ----ALDPRAPASTLCLR------TLVEHSGRVFRLQFD-------EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred ----ccCCcccccchHHH------hhhhccceeEEEeec-------ceEEEeccCCCeEEEEEcCCCCcc
Confidence 1111111 123444 333232122235675 356777778899999999765543
No 76
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=9.2e-05 Score=70.26 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCceeEEEecCCCc-EEEeCCCCcEEEEeccc-----cccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS-----MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT 100 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~-----~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt 100 (244)
-+.+.||++++.+|. +|+.+.|+.|||||.+. .|+.+..+| ++. =|-|.|+||-+-++..|. +.|.++-.
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dh-pT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDH-PTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCC-ceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 355689999999998 99999999999999963 234444455 554 488999999999998885 66888864
Q ss_pred eeccCCCCcccccccccCCCCCcceeeeeCccc-hhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 101 LFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLD-SHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 101 ~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~-~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
.- -.+|.+..-|. |+| .++-- +.+ ---|..+ -+..-.+..+|.|.-+++|+++-=+
T Consensus 163 ~K-~~dG~~~~~~v----------------~~D~~~f~~kh~v----~~i~iGi-A~~~k~imsas~dt~i~lw~lkGq~ 220 (420)
T KOG2096|consen 163 VK-KTDGSGSHHFV----------------HIDNLEFERKHQV----DIINIGI-AGNAKYIMSASLDTKICLWDLKGQL 220 (420)
T ss_pred ee-cccCCCCcccc----------------cccccccchhccc----ceEEEee-cCCceEEEEecCCCcEEEEecCCce
Confidence 32 12232222121 222 11110 110 0112222 1235567788999999999998555
Q ss_pred cCCccc
Q 044877 179 NGSHEC 184 (244)
Q Consensus 179 ~g~~~~ 184 (244)
-+..+.
T Consensus 221 L~~idt 226 (420)
T KOG2096|consen 221 LQSIDT 226 (420)
T ss_pred eeeecc
Confidence 444443
No 77
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.99 E-value=0.00011 Score=70.35 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=59.3
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCc-EEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGK-IRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGTTD-TYLILIC 99 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~-IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT~~-~~L~L~d 99 (244)
+-+.+..|+|++++|. ||++|.+|+ ||+|+...+.+.+.+-.|.- -.|-+|+|+||+++|.|++. .++.++-
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 4567789999999999 999999998 89999987766665544533 47899999999999999987 5677764
No 78
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=7.8e-05 Score=72.77 Aligned_cols=124 Identities=14% Similarity=0.225 Sum_probs=93.6
Q ss_pred CceeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCC
Q 044877 31 TNFQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGT 108 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~ 108 (244)
-+..|++.+++|+.++|+ ..|.|.||-..+++..+ .+.+|=.+||.|.+|-||.++++.++ .-++.|....-
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l----- 155 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL----- 155 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHH-HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee-----
Confidence 358999999999955555 99999999999998666 46788899999999999999999986 55999997531
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
+. ...+. ..+|.| .+.+|...-|--+.. .| +...+++.+|.++.+-+||+..
T Consensus 156 ----v~-a~~~~-------~~~p~~-~f~~HtlsITDl~ig--~G-g~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 156 ----VS-ADNDH-------SVKPLH-IFSDHTLSITDLQIG--SG-GTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred ----cc-cccCC-------Ccccee-eeccCcceeEEEEec--CC-CccceEEEecCCceEEEEEecc
Confidence 11 01111 233333 366777766666665 22 3578999999999999999864
No 79
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.99 E-value=1.3e-05 Score=78.14 Aligned_cols=69 Identities=14% Similarity=0.157 Sum_probs=57.7
Q ss_pred ceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceec--C--CCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 32 NFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTA--F--PGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 32 ~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~--l--pglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
++++|+++| .-+ +|++|.|+..|+||.+..+ +|-. | -.|.-+|-+..+||+|-.||+|| +++|++||..
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLR-GKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhc-CCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 799999999 444 9999999999999998664 4421 1 23778999999999999999999 5889999984
No 80
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.97 E-value=8.5e-05 Score=70.48 Aligned_cols=147 Identities=22% Similarity=0.286 Sum_probs=101.6
Q ss_pred Cceeccccccc--CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc
Q 044877 17 PVLNWSQGHQF--SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT 93 (244)
Q Consensus 17 ~~~~~~~~k~Y--~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~ 93 (244)
|..+|+.. .| +...+.-.+.+...+. |+++|.|.+|-|||+++ +... +++.--..-.+-++||||+||++..-+
T Consensus 173 ~~v~~D~~-~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkG-q~L~-~idtnq~~n~~aavSP~GRFia~~gFT 249 (420)
T KOG2096|consen 173 HFVHIDNL-EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKG-QLLQ-SIDTNQSSNYDAAVSPDGRFIAVSGFT 249 (420)
T ss_pred cccccccc-ccchhcccceEEEeecCCceEEEEecCCCcEEEEecCC-ceee-eeccccccccceeeCCCCcEEEEecCC
Confidence 45566532 23 3344455566666665 99999999999999974 3333 344444556778999999999766554
Q ss_pred c-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877 94 Y-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW 172 (244)
Q Consensus 94 ~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW 172 (244)
- +.+|+..+. ++|+ |. ..-|..+ +.||.-..+.+-|+ +..++.|..|-+.-.-+|
T Consensus 250 pDVkVwE~~f~-kdG~----fq-------ev~rvf~-------LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 250 PDVKVWEPIFT-KDGT----FQ-------EVKRVFS-------LKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred CCceEEEEEec-cCcc----hh-------hhhhhhe-------eccchhheeeeeeC-----CCcceeEEEecCCcEEEe
Confidence 4 999998764 3332 43 2344444 56777677788998 347999999999999999
Q ss_pred echhhhcCCccccccccC
Q 044877 173 NFQQVKNGSHECYQNQEG 190 (244)
Q Consensus 173 n~~kV~~g~~~~y~~~~~ 190 (244)
|..==-....++|-.++|
T Consensus 306 dtdVrY~~~qDpk~Lk~g 323 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEG 323 (420)
T ss_pred eccceEecCCCchHhhcC
Confidence 987666666676655544
No 81
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=7.2e-05 Score=75.63 Aligned_cols=132 Identities=20% Similarity=0.306 Sum_probs=94.1
Q ss_pred ccCCCceeccccccc-------CCCCc-eeEEEe-cCCCc-EEEeCCCCcEEEEeccccc--------cc-eecCC-CCC
Q 044877 13 NAGAPVLNWSQGHQF-------SRGTN-FQCFAS-TGDGS-IVVGSLDGKIRLYSSNSMR--------QA-KTAFP-GLG 72 (244)
Q Consensus 13 ~~~~~~~~~~~~k~Y-------~~~~~-Ft~vat-s~~G~-IavGS~dG~IRLyD~~~~r--------~a-Kt~lp-glG 72 (244)
.+|..|..|.-.++- .+..+ +.|+|. -++-. +|+|+.|+.|.|||..++- ++ -..++ |..
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 356778888877772 22222 689998 44434 9999999999999996441 11 22455 788
Q ss_pred CCeeEEEeCCCCCEEEEe-CCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeee
Q 044877 73 SPIRYVDVTYDGRWILGT-TDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWV 151 (244)
Q Consensus 73 dPI~~vdvS~DG~~lLaT-~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~ 151 (244)
++|-+++..+.|.-|++. |.+-|+|||.+.. .|+.+ +-||.-|-.--.-+
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~--------------------~kimk-------LrGHTdNVr~ll~~-- 222 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC--------------------KKIMK-------LRGHTDNVRVLLVN-- 222 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccc--------------------cceee-------eeccccceEEEEEc--
Confidence 999999999999777755 5788999997631 23334 33665444443444
Q ss_pred cCCCCcceEEEEeeCCeEEEEechh
Q 044877 152 TENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 152 tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
+.+.++|.||++.-+=+||+.+
T Consensus 223 ---dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 223 ---DDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred ---CCCCeEeecCCCceEEeeeccc
Confidence 3479999999999999999853
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=0.00011 Score=69.24 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=63.8
Q ss_pred eeEEEecCCC---cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCC
Q 044877 33 FQCFASTGDG---SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGT 108 (244)
Q Consensus 33 Ft~vats~~G---~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~ 108 (244)
.+|.-+++.- ++.+|+.||.|-+||...-...++ |.++...|++|++.|.|+.-|+-. +..|++||.. .
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~s-lK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV------~ 158 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKS-LKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV------R 158 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeee-ecccccccceeEecCCCceEEEEcCCceeeeehhh------c
Confidence 5677777754 699999999999999977767775 566777799999999999999776 6889999975 3
Q ss_pred cccccccccC
Q 044877 109 TKTGFNGRMG 118 (244)
Q Consensus 109 ~~~GF~~~~~ 118 (244)
|+.+|...++
T Consensus 159 Gr~a~v~~L~ 168 (362)
T KOG0294|consen 159 GRVAFVLNLK 168 (362)
T ss_pred CccceeeccC
Confidence 4556776554
No 83
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00017 Score=73.05 Aligned_cols=141 Identities=18% Similarity=0.257 Sum_probs=109.7
Q ss_pred cccccccCCCCc-eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC--CEEEEeCC-cc
Q 044877 21 WSQGHQFSRGTN-FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG--RWILGTTD-TY 94 (244)
Q Consensus 21 ~~~~k~Y~~~~~-Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG--~~lLaT~~-~~ 94 (244)
|++...|..... ..+||+.|... .|++|.|++|++|..-..-.-. +|.||---|.+||.-+-| -||++.++ .+
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-Tl~gHekGVN~Vdyy~~gdkpylIsgaDD~t 208 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF-TLEGHEKGVNCVDYYTGGDKPYLISGADDLT 208 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce-eeeccccCcceEEeccCCCcceEEecCCCce
Confidence 455555555555 57999999543 9999999999999996554445 578999999999998544 68988886 67
Q ss_pred eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 95 LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 95 L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
|.+||.+- .-+++ ++-||.+|-..+.|. + .-.-+|.+|.+.-|-+|+-
T Consensus 209 iKvWDyQt---------------------k~CV~------TLeGHt~Nvs~v~fh--p---~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 209 IKVWDYQT---------------------KSCVQ------TLEGHTNNVSFVFFH--P---ELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred EEEeecch---------------------HHHHH------HhhcccccceEEEec--C---CCcEEEEecCCccEEEecC
Confidence 99999753 23666 899999999999998 3 3578999999999999998
Q ss_pred hhhhcCCccccccccCCceeeeeE
Q 044877 175 QQVKNGSHECYQNQEGLKSCYCYK 198 (244)
Q Consensus 175 ~kV~~g~~~~y~~~~~l~~~~~Y~ 198 (244)
..-+.-+.-.| ||-..+|-.
T Consensus 257 ~Ty~lE~tLn~----gleRvW~I~ 276 (794)
T KOG0276|consen 257 KTYKLEKTLNY----GLERVWCIA 276 (794)
T ss_pred cceehhhhhhc----CCceEEEEe
Confidence 88777666666 566666644
No 84
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=9.1e-05 Score=76.99 Aligned_cols=118 Identities=22% Similarity=0.332 Sum_probs=81.5
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEecccc-c---------------------------------------cce
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSM-R---------------------------------------QAK 65 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~-r---------------------------------------~aK 65 (244)
|+-..-+|.++.+++|. |++++.||+||.|+.... . ...
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 44444577777777777 777777777777776422 0 234
Q ss_pred ecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCcccee
Q 044877 66 TAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFH 144 (244)
Q Consensus 66 t~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft 144 (244)
+.|-.+--||.+++|+.||+|+++.++.+ |.|++.. |.. .-+ ++-|+.-.-.
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~--D~s----------------~~~---------~lrgh~apVl 142 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD--DSS----------------QEK---------VLRGHDAPVL 142 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecc--ccc----------------hhe---------eecccCCcee
Confidence 45566778999999999999999999755 8888863 111 111 2334443334
Q ss_pred eeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 145 KAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 145 ~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
.-.|+ .++|-+.|.+++.-|.+||++.
T Consensus 143 ~l~~~-----p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 143 QLSYD-----PKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eeeEc-----CCCCEEEEEecCceEEEEEccc
Confidence 45666 2479999999999999999984
No 85
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=0.00015 Score=67.36 Aligned_cols=114 Identities=20% Similarity=0.318 Sum_probs=90.9
Q ss_pred ceeEEEecCC-Cc-EEEeCCCCcEEEEeccccc--cceecC-CCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877 32 NFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMR--QAKTAF-PGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK 105 (244)
Q Consensus 32 ~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r--~aKt~l-pglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~ 105 (244)
..-.+|.+|- |. ||+||.|..||+|+....+ ..||.| .+|.-.|.+|+.||.|++|++++ +.+..||.-.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~---- 91 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE---- 91 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC----
Confidence 5789999997 88 9999999999999996322 456666 46888999999999999998887 6888898742
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
.++ |+ ++. ++-||..-....-|+ ..++.....|-|+-|-+|-..
T Consensus 92 ~~e----fe-----------cv~------~lEGHEnEVK~Vaws-----~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 92 DGE----FE-----------CVA------TLEGHENEVKCVAWS-----ASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred CCc----ee-----------EEe------eeeccccceeEEEEc-----CCCCEEEEeeCCCeEEEEEec
Confidence 111 55 344 677888777777777 236899999999999999877
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.95 E-value=0.00012 Score=70.41 Aligned_cols=133 Identities=14% Similarity=0.214 Sum_probs=99.9
Q ss_pred CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877 31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT 109 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~ 109 (244)
.++++|..++.+.|+++|-|-.||.||..+++ .++.+- .+-++.+|+.+|.-+.|++.| +.-|+|||-+-++++
T Consensus 261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~-~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs--- 335 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGG-LKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS--- 335 (423)
T ss_pred cceeeEEEcCCCceEeecccceEEEEEeeccc-ceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCc---
Confidence 35789999998889999999999999998875 333333 678999999999999999888 466999997642211
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCCccceeee-eeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccc
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA-QFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQ 188 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a-kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~ 188 (244)
..+ ..+.||.. |-.+ +.+ +.. .-..+.+|.++-+-+||++.-+.-
T Consensus 336 ----------------~v~-----~s~~gH~n-wVssvkws--p~~--~~~~~S~S~D~t~klWDvRS~k~p-------- 381 (423)
T KOG0313|consen 336 ----------------VVS-----QSLIGHKN-WVSSVKWS--PTN--EFQLVSGSYDNTVKLWDVRSTKAP-------- 381 (423)
T ss_pred ----------------eeE-----Eeeecchh-hhhheecC--CCC--ceEEEEEecCCeEEEEEeccCCCc--------
Confidence 111 14778765 4433 444 533 567899999999999999876632
Q ss_pred cCCceeeeeEEEecCcccccc
Q 044877 189 EGLKSCYCYKIVLKDDSIVDS 209 (244)
Q Consensus 189 ~~l~~~~~Y~i~~~~e~iv~~ 209 (244)
=|.|-+-++.|.+.
T Consensus 382 -------lydI~~h~DKvl~v 395 (423)
T KOG0313|consen 382 -------LYDIAGHNDKVLSV 395 (423)
T ss_pred -------ceeeccCCceEEEE
Confidence 27898888888744
No 87
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=5.5e-05 Score=76.42 Aligned_cols=117 Identities=17% Similarity=0.219 Sum_probs=92.0
Q ss_pred CCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCC
Q 044877 29 RGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKN 106 (244)
Q Consensus 29 ~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~ 106 (244)
+..|..+..+=+ ...|++||.|+.||+|+-.++++.+ .+..|.|-|.+|.+.|---++|+.++ -+|+|||-.
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~-~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we----- 127 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK-TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE----- 127 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEecccceeeE-EeeccccceeeeeecCCCCeEEecCCccEEEEeecc-----
Confidence 344444444444 4459999999999999999998888 47899999999999999999999997 569999952
Q ss_pred CCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 107 GTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 107 ~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
+ .=.+-| ++.||.+---.--|| +.+ .++..++|-++-|-+|+|.+
T Consensus 128 --------~-------~wa~~q------tfeGH~HyVMqv~fn--PkD--~ntFaS~sLDrTVKVWslgs 172 (794)
T KOG0276|consen 128 --------N-------EWACEQ------TFEGHEHYVMQVAFN--PKD--PNTFASASLDRTVKVWSLGS 172 (794)
T ss_pred --------C-------ceeeee------EEcCcceEEEEEEec--CCC--ccceeeeeccccEEEEEcCC
Confidence 1 112344 678888755566888 433 78999999999999999964
No 88
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.93 E-value=2.1e-05 Score=75.31 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=87.7
Q ss_pred eEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccc
Q 044877 34 QCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTG 112 (244)
Q Consensus 34 t~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~G 112 (244)
..|.++.. +|+++|.|-+||+||..+..+.+| |.||.--|- ++-..|++|++.+ +++|+|||..-
T Consensus 324 NvVdfd~k-yIVsASgDRTikvW~~st~efvRt-l~gHkRGIA--ClQYr~rlvVSGSSDntIRlwdi~~---------- 389 (499)
T KOG0281|consen 324 NVVDFDDK-YIVSASGDRTIKVWSTSTCEFVRT-LNGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIEC---------- 389 (499)
T ss_pred eeeccccc-eEEEecCCceEEEEeccceeeehh-hhcccccce--ehhccCeEEEecCCCceEEEEeccc----------
Confidence 45555655 899999999999999998888885 677776665 4568999999886 69999999742
Q ss_pred cccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCc
Q 044877 113 FNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSH 182 (244)
Q Consensus 113 F~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~ 182 (244)
..+|+ .+-||.-=...-+|+ .++++.+.-+.-+-+|||...++-..
T Consensus 390 -----------G~cLR------vLeGHEeLvRciRFd-------~krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 390 -----------GACLR------VLEGHEELVRCIRFD-------NKRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred -----------cHHHH------HHhchHHhhhheeec-------CceeeeccccceEEEEecccccCCcc
Confidence 34666 566766444566897 58999999999999999999887644
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.92 E-value=0.00014 Score=71.30 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=91.4
Q ss_pred ccccceeeecccCC-CceecccccccCCCCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEE
Q 044877 3 DKNGIVQNLANAGA-PVLNWSQGHQFSRGTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVD 79 (244)
Q Consensus 3 ~~~~~~~~~~~~~~-~~~~~~~~k~Y~~~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vd 79 (244)
|.-|.||-.. ..+ -.|.--+ +.--+.-.+-+++.+ . +++||.|+.+++||..+.-. .+-|.++-|-|.+.+
T Consensus 87 D~sG~V~vfD-~k~r~iLR~~~----ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 87 DESGHVKVFD-MKSRVILRQLY----AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGD 160 (487)
T ss_pred CCcCcEEEec-cccHHHHHHHh----hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeec
Confidence 5678888765 222 1222222 333445556667744 4 89999999999999976543 556889999999999
Q ss_pred eCCCCCEEEEeC--CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCc
Q 044877 80 VTYDGRWILGTT--DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQ 157 (244)
Q Consensus 80 vS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~ 157 (244)
++|-...+++|- +..|+|||++..+ ++.+.|. .|.++ +.--|= + .
T Consensus 161 ~~~~~~hivvtGsYDg~vrl~DtR~~~-------------------~~v~eln------hg~pV--e~vl~l--p----s 207 (487)
T KOG0310|consen 161 ISPANDHIVVTGSYDGKVRLWDTRSLT-------------------SRVVELN------HGCPV--ESVLAL--P----S 207 (487)
T ss_pred cccCCCeEEEecCCCceEEEEEeccCC-------------------ceeEEec------CCCce--eeEEEc--C----C
Confidence 999888777663 7889999997531 2333321 23333 333342 1 4
Q ss_pred ceEEEEeeCCeEEEEech
Q 044877 158 ERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 158 E~~IvtStG~fvvvWn~~ 175 (244)
+..|++..|+-|-+||+-
T Consensus 208 gs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 208 GSLIASAGGNSVKVWDLT 225 (487)
T ss_pred CCEEEEcCCCeEEEEEec
Confidence 688999999999999986
No 90
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.90 E-value=9.8e-05 Score=72.45 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=87.3
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC---------EEEEeC-CcceEEEE
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR---------WILGTT-DTYLILIC 99 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~---------~lLaT~-~~~L~L~d 99 (244)
+++.|+-.+|.|. ++++|.||++|||...... +-.-|.+|.-.|..+..||+|. -||+.. +++++|||
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd 438 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD 438 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE
Confidence 5678999999999 8999999999999975443 4456788998999999988874 344333 68899999
Q ss_pred eeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 100 TLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 100 t~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
..- +.| |- .+|+|..+...-.|+. .++.+..+|.+..|.+|+.+.
T Consensus 439 v~~-------------------gv~--i~------~f~kH~~pVysvafS~-----~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 439 VES-------------------GVP--IH------TLMKHQEPVYSVAFSP-----NGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred ccC-------------------Cce--eE------eeccCCCceEEEEecC-----CCcEEEecCCCCeeEeccccc
Confidence 741 222 22 4778877677779982 379999999999999999764
No 91
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.89 E-value=0.00037 Score=60.09 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=51.6
Q ss_pred CceeEEEecCCCc---EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C---cceEEEEee
Q 044877 31 TNFQCFASTGDGS---IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D---TYLILICTL 101 (244)
Q Consensus 31 ~~Ft~vats~~G~---IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~---~~L~L~dt~ 101 (244)
.+..+++.+|+|. |+.|..++.|+|||..+. ...+ ++ ..++..|.+||+|++|+.+. . ..|.+||+.
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-~i~~-~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-KIFS-FG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCccc-EeEe-ec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 3589999999997 455778899999999632 2332 33 56889999999999999764 2 349999974
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.86 E-value=0.00011 Score=77.01 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=73.4
Q ss_pred Cceeccccccc-CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877 17 PVLNWSQGHQF-SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T 93 (244)
Q Consensus 17 ~~~~~~~~k~Y-~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~ 93 (244)
-|++|.+-.-| ...++.+-++.+|++. +|++|.|+.|-+|+.++..+.+ .|.+|...|.+|.+-|=|+|+.+.++ .
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~-vl~~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK-VLRGHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee-eeecccccccceEECCccCeeeeecCCc
Confidence 37888888777 4455699999999988 8999999999999999997666 68999999999999999999988885 7
Q ss_pred ceEEEEee
Q 044877 94 YLILICTL 101 (244)
Q Consensus 94 ~L~L~dt~ 101 (244)
+|++|+|.
T Consensus 194 tikvwrt~ 201 (942)
T KOG0973|consen 194 TLKVWRTS 201 (942)
T ss_pred eEEEEEcc
Confidence 79999963
No 93
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.86 E-value=0.00011 Score=71.73 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=86.2
Q ss_pred eeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCCCc
Q 044877 33 FQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNGTT 109 (244)
Q Consensus 33 Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~ 109 (244)
|+...++. ++.++.|..-|..-+||.++...-...+.-+.--|++|++.|--.|++||| +.+++|||++-
T Consensus 282 fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~------- 354 (498)
T KOG4328|consen 282 FSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ------- 354 (498)
T ss_pred eeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh-------
Confidence 77777766 556999999999999999876433334445566999999999999999998 58899999863
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
|.. |+.| .| ..+.|...-..|+|+.. + -+++.|+-+.++=+||-+
T Consensus 355 -------l~~-K~sp-~l-------st~~HrrsV~sAyFSPs--~---gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 355 -------LRG-KASP-FL-------STLPHRRSVNSAYFSPS--G---GTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred -------hcC-CCCc-ce-------ecccccceeeeeEEcCC--C---CceEeeccCCceEEeecc
Confidence 111 1233 23 34456667788999942 2 349999999999999986
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.85 E-value=4e-05 Score=77.46 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=62.9
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
..+...-++|+++.|. ||.|+..++||+||-++.++.. -|.||-|-|..|-++.||+.+|+++ +.+|+|||..
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim-kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM-KLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEecccccccee-eeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 4555677999999998 8999999999999998765443 3679999999999999999999886 6889999964
No 95
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.85 E-value=0.00041 Score=59.09 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=48.9
Q ss_pred ceeEEEecCCCc-EEE-eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc--ceEEEEe
Q 044877 32 NFQCFASTGDGS-IVV-GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT--YLILICT 100 (244)
Q Consensus 32 ~Ft~vats~~G~-Iav-GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~--~L~L~dt 100 (244)
....++++++|. +++ ++.+|.|++||..+.+... .++ .+..+.++.++|||++++++... .+..||.
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDT 144 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-Eee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeC
Confidence 346788999987 544 4678999999997654333 344 45667999999999999877653 3566674
No 96
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.84 E-value=0.00013 Score=72.62 Aligned_cols=99 Identities=15% Similarity=0.277 Sum_probs=80.4
Q ss_pred cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCC
Q 044877 43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKI 121 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~k 121 (244)
.+++||.|..||+||..++++.. ++-|+++||..|... +..+++.| +.+|++||...
T Consensus 303 ~~~sgs~D~tVkVW~v~n~~~l~-l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~------------------- 360 (537)
T KOG0274|consen 303 LLVSGSRDNTVKVWDVTNGACLN-LLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT------------------- 360 (537)
T ss_pred eEeeccCCceEEEEeccCcceEE-EeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-------------------
Confidence 48889999999999998877666 466799999999998 88888888 57799999852
Q ss_pred CcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877 122 AAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177 (244)
Q Consensus 122 p~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV 177 (244)
-.+|+ .+.||...-++-.|+ + .+.++.+|.+..+-+||+..-
T Consensus 361 --~~cl~------sl~gH~~~V~sl~~~-----~-~~~~~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 361 --GKCLK------SLSGHTGRVYSLIVD-----S-ENRLLSGSLDTTIKVWDLRTK 402 (537)
T ss_pred --ceeee------eecCCcceEEEEEec-----C-cceEEeeeeccceEeecCCch
Confidence 23566 677877766655554 1 299999999999999999887
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.84 E-value=0.0005 Score=58.55 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=52.0
Q ss_pred eeEEEecCCCc-E-EEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877 33 FQCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~-I-avGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~ 101 (244)
..+++.+++|. + ++++.+|.|++||..+++... .++...+ +..++++|||+.+++++ ++.|++||..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG-TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 46789999997 4 678899999999997765444 3554334 57899999999988776 3679999974
No 98
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.82 E-value=9.2e-05 Score=63.80 Aligned_cols=67 Identities=19% Similarity=0.340 Sum_probs=50.0
Q ss_pred CceeEEEecCCCc-EEEeC---CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C------CcceEEEE
Q 044877 31 TNFQCFASTGDGS-IVVGS---LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T------DTYLILIC 99 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS---~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~------~~~L~L~d 99 (244)
.+..++..+|+|+ ||+|+ ..|.|++||....+...+ .. +. -++.++.||||++++++ + ++.++||+
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-FE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-cc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 3456899999998 77775 457899999976554442 22 33 47999999999999954 3 46689998
Q ss_pred e
Q 044877 100 T 100 (244)
Q Consensus 100 t 100 (244)
.
T Consensus 178 ~ 178 (194)
T PF08662_consen 178 F 178 (194)
T ss_pred e
Confidence 5
No 99
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.82 E-value=9.9e-05 Score=75.33 Aligned_cols=118 Identities=16% Similarity=0.209 Sum_probs=86.9
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCE-EEEe--CCcceEEEEeeeccC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRW-ILGT--TDTYLILICTLFTDK 105 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~-lLaT--~~~~L~L~dt~~~~~ 105 (244)
..|.--++++|.|. +|+|+.||.+|+||...+.+.- .|.|||.+|.+++|.|+-.+ +|+. .+..+++||..-+
T Consensus 105 e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th-~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~-- 181 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH-SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK-- 181 (775)
T ss_pred CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE-EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC--
Confidence 55677899999887 8999999999999998776554 78999999999999998765 5544 4688999996421
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~ 179 (244)
.+ +|. ...+|.-.-|.--|.- + ....+..+-|+-+++||+++-+.
T Consensus 182 -----------------~t-cl~------~~~~H~S~vtsL~~~~---d--~~~~ls~~RDkvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 182 -----------------RT-CLH------TMILHKSAVTSLAFSE---D--SLELLSVGRDKVIIVWDLVQYKK 226 (775)
T ss_pred -----------------ch-HHH------HHHhhhhheeeeeecc---C--CceEEEeccCcEEEEeehhhhhh
Confidence 11 232 2333433344445551 2 57788899999999999965543
No 100
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.81 E-value=0.00046 Score=65.20 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=58.2
Q ss_pred CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC--EEEEeCC-cceEEEEee
Q 044877 31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR--WILGTTD-TYLILICTL 101 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~--~lLaT~~-~~L~L~dt~ 101 (244)
-..||+|++.- ++|+||.|-.|++||.+...+.-++|. +.+.|+.+.|+++-. |||+.++ ..|.+|++.
T Consensus 44 ~sitavAVs~~-~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 44 GSITALAVSGP-YVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cceeEEEecce-eEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 34899999876 799999999999999977666665444 789999999999987 9999986 559999973
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.80 E-value=0.0002 Score=69.94 Aligned_cols=150 Identities=16% Similarity=0.224 Sum_probs=98.6
Q ss_pred cccceeeecccCCCceeccccccc---CC-CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCC---------
Q 044877 4 KNGIVQNLANAGAPVLNWSQGHQF---SR-GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFP--------- 69 (244)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~k~Y---~~-~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lp--------- 69 (244)
+.|-|+.+. +-.++-.+..++ .. ....+|++.++++. +.++|.+|.|-=|+..+++.-+..+|
T Consensus 115 ~~Gr~~r~~---a~~v~~~~s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~ 191 (479)
T KOG0299|consen 115 QSGRVRRLV---ADKVQAPESSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHG 191 (479)
T ss_pred hcceeehhh---hhhccccccccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhcc
Confidence 456666554 334555555553 22 34489999999886 99999999999999977652211222
Q ss_pred --------CCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccch-hhcCC
Q 044877 70 --------GLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDS-HLAGV 139 (244)
Q Consensus 70 --------glGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~-~~~G~ 139 (244)
++-.-|+.+++|+||+||+..-. .-|.|||+.-. ||+ .+.||
T Consensus 192 ~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~----------------------------ehv~~~~gh 243 (479)
T KOG0299|consen 192 NPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL----------------------------EHVKVFKGH 243 (479)
T ss_pred CCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCccc----------------------------chhhccccc
Confidence 45567899999999999976665 55889997521 122 24555
Q ss_pred ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccC
Q 044877 140 NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEG 190 (244)
Q Consensus 140 ~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~ 190 (244)
--.--.--|-- ...+.+++|.++-+-+||+++.-- ....|.+|.+
T Consensus 244 r~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~ 288 (479)
T KOG0299|consen 244 RGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSY-VETLYGHQDG 288 (479)
T ss_pred ccceeeeeeec-----CccceeeeecCCceEEEehhHhHH-HHHHhCCccc
Confidence 43223345541 257789999999999999987532 2234555543
No 102
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.80 E-value=0.00012 Score=70.36 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=74.5
Q ss_pred CCCcEEEeCCCCcEEEEecccc-ccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCccccccccc
Q 044877 40 GDGSIVVGSLDGKIRLYSSNSM-RQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRM 117 (244)
Q Consensus 40 ~~G~IavGS~dG~IRLyD~~~~-r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~ 117 (244)
++|-+|++|.||.||+||.+.. +.+--+...++.-|.-|+++-+.-+|++..+ .+|.|||.+. |...
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~----------~~~~- 337 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ----------FKSG- 337 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhh----------ccCC-
Confidence 3555999999999999999865 3333344789999999999999996656665 7799999864 3311
Q ss_pred CCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877 118 GNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 118 ~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~ 179 (244)
.|. +++.-|..--|+-.++ +- ....+.+++.+.-+-+||+.-=+.
T Consensus 338 ---~pV----------A~fk~Hk~pItsieW~--p~--e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 338 ---QPV----------ATFKYHKAPITSIEWH--PH--EDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred ---Ccc----------eeEEeccCCeeEEEec--cc--cCceEEeccCCCcEEEEEeeccCC
Confidence 121 0222233333455555 31 245566677788999999964443
No 103
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.79 E-value=0.00027 Score=72.67 Aligned_cols=125 Identities=14% Similarity=0.153 Sum_probs=94.8
Q ss_pred ceecccccccCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCC--C-CCCeeEEEeCCCCCEEEEeC-C
Q 044877 18 VLNWSQGHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPG--L-GSPIRYVDVTYDGRWILGTT-D 92 (244)
Q Consensus 18 ~~~~~~~k~Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpg--l-GdPI~~vdvS~DG~~lLaT~-~ 92 (244)
+......++-.+++..--++..| .++|+++..|-.||+||...+++.|++--. + |++ +-|.+-|.|-||++.| +
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l-IKv~lDPSgiY~atScsd 662 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL-IKVILDPSGIYLATSCSD 662 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce-EEEEECCCccEEEEeecC
Confidence 44444555556677777788999 456999999999999999999888854322 2 444 4588889999999888 5
Q ss_pred cceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEE
Q 044877 93 TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIW 172 (244)
Q Consensus 93 ~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvW 172 (244)
.+|-++|-.- ..+.. ..+||.--.|.-+|. +.=...|..|.+.++++|
T Consensus 663 ktl~~~Df~s---------------------gEcvA------~m~GHsE~VTG~kF~-----nDCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 663 KTLCFVDFVS---------------------GECVA------QMTGHSEAVTGVKFL-----NDCKHLISVSGDGCIFVW 710 (1080)
T ss_pred CceEEEEecc---------------------chhhh------hhcCcchheeeeeec-----ccchhheeecCCceEEEE
Confidence 8899999531 22333 577887777888997 236889999999999999
Q ss_pred ech
Q 044877 173 NFQ 175 (244)
Q Consensus 173 n~~ 175 (244)
-+-
T Consensus 711 ~lp 713 (1080)
T KOG1408|consen 711 KLP 713 (1080)
T ss_pred ECc
Confidence 874
No 104
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.78 E-value=0.00035 Score=65.04 Aligned_cols=117 Identities=22% Similarity=0.350 Sum_probs=83.5
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC---cc---eEEEEeeeccC
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD---TY---LILICTLFTDK 105 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~---~~---L~L~dt~~~~~ 105 (244)
+.|+..+-+-. +++||.|..+||||..++++.- +++ .+.||..++|+.+|..+|++++ .| |-++|++..+.
T Consensus 55 vW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la-~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA-TWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred EEEEEecCCcceeeeccccceeEEEEcCCCcEEE-Eee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 67777777544 9999999999999999987554 355 9999999999999999998874 22 77778753211
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
. . ....|.+.-+.||. +-++|- |.+ .+|.+|.+-...-+=.||.+.
T Consensus 133 ~----------~--~s~ep~~kI~t~~s--------kit~a~--Wg~---l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 133 D----------I--DSEEPYLKIPTPDS--------KITSAL--WGP---LGETIIAGHEDGSISIYDART 178 (327)
T ss_pred h----------h--cccCceEEecCCcc--------ceeeee--ecc---cCCEEEEecCCCcEEEEEccc
Confidence 1 0 01235666666662 223443 433 258888888888999999884
No 105
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.76 E-value=0.00012 Score=72.88 Aligned_cols=111 Identities=14% Similarity=0.254 Sum_probs=81.9
Q ss_pred CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877 29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG 107 (244)
Q Consensus 29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~ 107 (244)
...++.||..+ .+.+++||.||.|++||..++++.+ .|-||-..|+++.+.+. ..+++++ +++|++||..-
T Consensus 330 h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~-sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~----- 401 (537)
T KOG0274|consen 330 HTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLK-SLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT----- 401 (537)
T ss_pred ccccEEEEEec-CCEEEEEecCceEEEEEhhhceeee-eecCCcceEEEEEecCc-ceEEeeeeccceEeecCCc-----
Confidence 55678899988 4479999999999999999998888 47889999999977665 6666666 57799999642
Q ss_pred CcccccccccCCCCCcc-eeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 108 TTKTGFNGRMGNKIAAP-RLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 108 ~~~~GF~~~~~~~kp~p-r~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
+ +++. ++.|+.---..-.| .....+..+.++-+-+||.+.
T Consensus 402 ----------------~~~c~~------tl~~h~~~v~~l~~-------~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 402 ----------------KRKCIH------TLQGHTSLVSSLLL-------RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ----------------hhhhhh------hhcCCccccccccc-------ccceeEeccccccEEEeeccc
Confidence 2 4444 45554321111122 257889999999999996653
No 106
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.76 E-value=0.00033 Score=72.93 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=92.8
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeCCcceEEEEeeeccCCC-
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTTDTYLILICTLFTDKNG- 107 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~~~~L~L~dt~~~~~~~- 107 (244)
.|..+++++.+|. ||.||.|=.|+|-+....- ++..+.||..||.+|++.|.|.+|+ ++|+..+++||.+-..-..
T Consensus 97 lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~t 175 (933)
T KOG1274|consen 97 LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKT 175 (933)
T ss_pred ccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhh
Confidence 4567999999998 9999999999999987665 3446789999999999999999998 5678999999986321100
Q ss_pred ----Ccccccc-cccC---CCCCcceeeeeCccc--h------------hhcCCc--cceeeeeeeeecCCCCcceEEEE
Q 044877 108 ----TTKTGFN-GRMG---NKIAAPRLLKLTPLD--S------------HLAGVN--NKFHKAQFSWVTENGKQERHLVA 163 (244)
Q Consensus 108 ----~~~~GF~-~~~~---~~kp~pr~L~L~Pe~--~------------~~~G~~--~~Ft~akFn~~tg~~~~E~~Ivt 163 (244)
.-.++|. .++- .=-|....|.+-|.+ + .+-+.. -+|.--.|+ ..++.+...
T Consensus 176 l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws-----PnG~YiAAs 250 (933)
T KOG1274|consen 176 LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS-----PNGKYIAAS 250 (933)
T ss_pred cccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEc-----CCCcEEeee
Confidence 0112333 1110 011333344433322 1 111111 124333443 237888889
Q ss_pred eeCCeEEEEechhh
Q 044877 164 TVGKFSVIWNFQQV 177 (244)
Q Consensus 164 StG~fvvvWn~~kV 177 (244)
+..+-+.+||.++.
T Consensus 251 ~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 251 TLDGQILVWNVDTH 264 (933)
T ss_pred ccCCcEEEEecccc
Confidence 99999999999963
No 107
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.75 E-value=0.00011 Score=68.01 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=66.2
Q ss_pred ccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 24 GHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 24 ~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
.|.|.--.++++...+|+-. .+.|..|+.++-||-.++...-..-.|+-.||.+|.+||||....+.+ +.+||||.+.
T Consensus 218 lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 218 LKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred eeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 46677777789999999645 899999999999999876544323478999999999999999998888 4889999997
Q ss_pred ec
Q 044877 102 FT 103 (244)
Q Consensus 102 ~~ 103 (244)
+.
T Consensus 298 ~~ 299 (334)
T KOG0278|consen 298 PG 299 (334)
T ss_pred CC
Confidence 64
No 108
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=97.74 E-value=0.00012 Score=70.43 Aligned_cols=110 Identities=19% Similarity=0.288 Sum_probs=74.8
Q ss_pred eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEE-eCCCCC---EEEEeCCcceEEEEeeeccCCCC
Q 044877 33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVD-VTYDGR---WILGTTDTYLILICTLFTDKNGT 108 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vd-vS~DG~---~lLaT~~~~L~L~dt~~~~~~~~ 108 (244)
+++|-.. .++|.+||.||.+|+||+.+ +..+ .+-|+++||.+++ +.+|.. ++.|.-+.+|+||.....+
T Consensus 108 VSsv~~~-~~~IltgsYDg~~riWd~~G-k~~~-~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~---- 180 (423)
T KOG0313|consen 108 VSSVKGA-SKWILTGSYDGTSRIWDLKG-KSIK-TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE---- 180 (423)
T ss_pred hhhhccc-CceEEEeecCCeeEEEecCC-ceEE-EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch----
Confidence 4555555 45799999999999999965 4566 5789999999774 334444 4434346889999874311
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
+.++-++. -.||.-...+-.-+ ..+.+.|.+|-+..+=+||
T Consensus 181 ------------------~~~~~~~~-~~GHk~~V~sVsv~-----~sgtr~~SgS~D~~lkiWs 221 (423)
T KOG0313|consen 181 ------------------NKVKALKV-CRGHKRSVDSVSVD-----SSGTRFCSGSWDTMLKIWS 221 (423)
T ss_pred ------------------hhhhHHhH-hcccccceeEEEec-----CCCCeEEeecccceeeecc
Confidence 11111111 22776555544443 3479999999999999999
No 109
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.73 E-value=9.4e-05 Score=68.48 Aligned_cols=90 Identities=22% Similarity=0.386 Sum_probs=67.8
Q ss_pred cceeeecccCCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC
Q 044877 6 GIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG 84 (244)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG 84 (244)
|-||-|. =|-|.-.|.=+-.. .+=-||.++|+|. +|+||.|-.+-|||..-.-|.+ .++.|--||.-|.||.||
T Consensus 169 G~v~ILs---ypsLkpv~si~AH~-snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R-~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 169 GCVEILS---YPSLKPVQSIKAHP-SNCICIEFDPDGRYFATGSADALVSLWDVDELICER-CISRLDWPVRTLSFSHDG 243 (313)
T ss_pred ceEEEEe---ccccccccccccCC-cceEEEEECCCCceEeeccccceeeccChhHhhhhe-eeccccCceEEEEeccCc
Confidence 5566654 33343334333333 3446999999997 9999999999999997655667 579999999999999999
Q ss_pred CEEEEeCC-cceEEEEe
Q 044877 85 RWILGTTD-TYLILICT 100 (244)
Q Consensus 85 ~~lLaT~~-~~L~L~dt 100 (244)
++|++++. -+|-|=++
T Consensus 244 ~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 244 RMLASASEDHFIDIAEV 260 (313)
T ss_pred ceeeccCccceEEeEec
Confidence 99998885 55655454
No 110
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00061 Score=68.76 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=60.0
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCE-EEEeC-CcceEEEEeeecc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRW-ILGTT-DTYLILICTLFTD 104 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~-lLaT~-~~~L~L~dt~~~~ 104 (244)
...|+.+++.|. +|+||.||.+|+|-..++||.++. .+.+-|.+|+++|.+.. |||.+ ...++|.++.+.+
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~--~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV--QFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE--eecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 488999999998 999999999999999999999974 37889999999998864 45554 4558888987754
No 111
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.00041 Score=65.97 Aligned_cols=106 Identities=18% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCc-EEEeCCCCcEEEEeccccc-cceecCCCC-CCCeeEEEeCCCCCEEEEeCC-----cceEEEEeeeccCCCCcccc
Q 044877 41 DGS-IVVGSLDGKIRLYSSNSMR-QAKTAFPGL-GSPIRYVDVTYDGRWILGTTD-----TYLILICTLFTDKNGTTKTG 112 (244)
Q Consensus 41 ~G~-IavGS~dG~IRLyD~~~~r-~aKt~lpgl-GdPI~~vdvS~DG~~lLaT~~-----~~L~L~dt~~~~~~~~~~~G 112 (244)
.++ |.++|.||.||+||.+..+ .|+-..-+. |.|-+++|....++-+.+.+. -.|.|||.+-.
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~--------- 153 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSE--------- 153 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccc---------
Confidence 444 9999999999999998543 333222222 578999999988888877763 44999998631
Q ss_pred cccccCCCCCcceeeeeCccchhhc-CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 113 FNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 113 F~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
.+| |+ .+. -|.-.-|.-+|. + ...+.++.+|++.+|-++|+++
T Consensus 154 ---------qq~--l~------~~~eSH~DDVT~lrFH--P--~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 154 ---------QQL--LR------QLNESHNDDVTQLRFH--P--SDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred ---------cch--hh------hhhhhccCcceeEEec--C--CCCCeEEeecccceEEeeecCC
Confidence 111 11 111 133345667787 3 2379999999999999999875
No 112
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.00044 Score=64.02 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=80.2
Q ss_pred ceeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEeeeccCCC
Q 044877 32 NFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTLFTDKNG 107 (244)
Q Consensus 32 ~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~~~~~~~ 107 (244)
.+-++-.++ .++ ++++|=||.|+|||..-.+ .-+++.|+.+-|-...+||--.-+++. + +.+|+|||.+..
T Consensus 106 EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~---- 180 (311)
T KOG0277|consen 106 EVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP---- 180 (311)
T ss_pred heEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC----
Confidence 456677777 444 8899999999999986554 444588999999999999765555544 3 688999996531
Q ss_pred CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877 108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~ 179 (244)
| +.+. -| .++|+--.++|.--+ ...+..++.++.|..||++.+..
T Consensus 181 -g---------------k~~~-i~--------ah~~Eil~cdw~ky~--~~vl~Tg~vd~~vr~wDir~~r~ 225 (311)
T KOG0277|consen 181 -G---------------KFMS-IE--------AHNSEILCCDWSKYN--HNVLATGGVDNLVRGWDIRNLRT 225 (311)
T ss_pred -C---------------ceeE-EE--------eccceeEeecccccC--CcEEEecCCCceEEEEehhhccc
Confidence 1 1111 01 144666677886322 34555567889999999998764
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.64 E-value=0.00043 Score=65.14 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=83.1
Q ss_pred ccccc----CCCCceeEEEecC-CCc-EEEeCCCCcEEEEeccc-cc-cceecCCCCCCCeeEEEeCCCCCEEEEe-CCc
Q 044877 23 QGHQF----SRGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNS-MR-QAKTAFPGLGSPIRYVDVTYDGRWILGT-TDT 93 (244)
Q Consensus 23 ~~k~Y----~~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~-~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~ 93 (244)
+.|+| ....-++++++|| ... ++.||=||+||+|+... +. ..| ..-.|..||..++.|-||.-+.+. |++
T Consensus 16 ~~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-a~~~~~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 16 PNKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-AQQSHDGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred cccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccch-hhhccCCCeEEEEEccCCceEEeeccCC
Confidence 45566 2334489999999 333 77999999999999843 11 123 455789999999999999988754 689
Q ss_pred ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
.++|||..- | +++.+. ....++ ..+.|+.+.+ -+-+..+|=++-+-.||
T Consensus 95 ~~k~wDL~S----~---------------Q~~~v~-------~Hd~pv----kt~~wv~~~~-~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 95 QAKLWDLAS----G---------------QVSQVA-------AHDAPV----KTCHWVPGMN-YQCLVTGSWDKTLKFWD 143 (347)
T ss_pred ceEEEEccC----C---------------Ceeeee-------ecccce----eEEEEecCCC-cceeEecccccceeecc
Confidence 999999742 1 122222 111122 1345554332 45677789999999999
Q ss_pred chh
Q 044877 174 FQQ 176 (244)
Q Consensus 174 ~~k 176 (244)
.++
T Consensus 144 ~R~ 146 (347)
T KOG0647|consen 144 TRS 146 (347)
T ss_pred cCC
Confidence 983
No 114
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.63 E-value=0.00017 Score=68.96 Aligned_cols=67 Identities=12% Similarity=0.199 Sum_probs=58.1
Q ss_pred eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877 33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT 100 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt 100 (244)
++.+..-++-+|++++.+|.||.||.++++ .|..+-||-.+|..+.+|||++.||.+++ ++.++++.
T Consensus 330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~-l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 330 VTKLKWLNTDYLLTACANGKVRQWDARTGQ-LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEEEEcCcchheeeccCceEEeeeccccc-eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 555666666679999999999999999995 77788999999999999999999999995 77888774
No 115
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.62 E-value=0.00019 Score=68.18 Aligned_cols=140 Identities=15% Similarity=0.099 Sum_probs=86.2
Q ss_pred eeEEEecCCC--cEEEeCCCCcEEEEeccccccceec--CCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877 33 FQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAKTA--FPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNG 107 (244)
Q Consensus 33 Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aKt~--lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~ 107 (244)
...+-+.|+- .|++||.|-.||||+..++.+.--+ +.||.+.|.+||++.||.+|++.- +..|+||+...++=++
T Consensus 138 INeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 138 INEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred chhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 3344466644 3899999999999999887654311 357889999999999999997554 5779999986544222
Q ss_pred C--cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877 108 T--TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180 (244)
Q Consensus 108 ~--~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g 180 (244)
. -..+|..- +...|-|+.-.+-|.=.+.--|..--...+|= ++-+++=|+++-++-|-.-++.+.
T Consensus 218 ~lE~s~~~~~~-~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-------gd~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 218 KLELSITYSPN-KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-------GDFILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred hhhhhcccCCC-CccCcCCccccccccccccccccchHHHHHHH-------hhheeecccCceEEEEecchhhhh
Confidence 2 22222210 12234454444333311111111111122332 478899999999999998666655
No 116
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.62 E-value=9.3e-05 Score=46.71 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=30.2
Q ss_pred cCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877 67 AFPGLGSPIRYVDVTYDGRWILGTTD-TYLILIC 99 (244)
Q Consensus 67 ~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~d 99 (244)
.+.++..+|.+|+++|++.+|++++. .+|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57899999999999999999998874 8899997
No 117
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.62 E-value=0.00038 Score=66.71 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=98.4
Q ss_pred cCCCceecccccccC-------CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCC
Q 044877 14 AGAPVLNWSQGHQFS-------RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR 85 (244)
Q Consensus 14 ~~~~~~~~~~~k~Y~-------~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~ 85 (244)
++-|+..|++..+|. -.-..+||++=|.|. |+++|.|..|+.||.-++-+.|| +|++.+=+..|+++.||.
T Consensus 170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t-~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT-FPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe-ccCchHhEEEEEecCCee
Confidence 445578899888772 345699999999886 99999999999999999888884 799999999999999999
Q ss_pred EEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEe
Q 044877 86 WILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVAT 164 (244)
Q Consensus 86 ~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtS 164 (244)
-+.+.+ +.+|++|-.--++.+-+ |. +-+-| -.++...|| .|.+.-|.-....+......++|
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~----lR---~hEh~-vEci~wap~---------~~~~~i~~at~~~~~~~~l~s~S 311 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAE----LR---EHEHP-VECIAWAPE---------SSYPSISEATGSTNGGQVLGSGS 311 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhh----hh---ccccc-eEEEEeccc---------ccCcchhhccCCCCCccEEEeec
Confidence 775443 47799999743211110 00 00111 233333333 22333222111123356788888
Q ss_pred eCCeEEEEechh
Q 044877 165 VGKFSVIWNFQQ 176 (244)
Q Consensus 165 tG~fvvvWn~~k 176 (244)
-++-+-.||+..
T Consensus 312 rDktIk~wdv~t 323 (406)
T KOG0295|consen 312 RDKTIKIWDVST 323 (406)
T ss_pred ccceEEEEeccC
Confidence 899999998764
No 118
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.62 E-value=0.00053 Score=65.51 Aligned_cols=96 Identities=24% Similarity=0.311 Sum_probs=74.7
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcc
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTK 110 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~ 110 (244)
.+|+.++.++. |.++|.|-.+|+--.+.+++.|. +.||..-|.+..+|+||.+|++++ +.++++|+..-++.-
T Consensus 309 vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~---- 383 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL---- 383 (508)
T ss_pred eeEEEEccCcchhhcccccceEEEeccccchhHHH-hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh----
Confidence 79999999887 99999999999999999998884 789999999999999999999665 788999997654311
Q ss_pred cccccccCCCCCcc--eeeeeCccch
Q 044877 111 TGFNGRMGNKIAAP--RLLKLTPLDS 134 (244)
Q Consensus 111 ~GF~~~~~~~kp~p--r~L~L~Pe~~ 134 (244)
.-|. .++..-|.. ..|.-+|||.
T Consensus 384 ~Tfk-~~~~d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 384 STFK-PLGTDYPVNSVILLPKNPEHF 408 (508)
T ss_pred hhcc-CCCCcccceeEEEcCCCCceE
Confidence 1132 344444442 2333368886
No 119
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.60 E-value=0.00018 Score=70.21 Aligned_cols=88 Identities=13% Similarity=0.182 Sum_probs=65.5
Q ss_pred cccCCCceeccccccc-CC-----CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC
Q 044877 12 ANAGAPVLNWSQGHQF-SR-----GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG 84 (244)
Q Consensus 12 ~~~~~~~~~~~~~k~Y-~~-----~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG 84 (244)
...++.+.-|.-..|- .. --++++++++++|+ +|+++.||.|+|||++..++-||..-.-+-+|.++++-..|
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCC
Confidence 3355556666544433 12 23589999999999 99999999999999988877776544455689999999999
Q ss_pred CEEEEeCCcceEEEEe
Q 044877 85 RWILGTTDTYLILICT 100 (244)
Q Consensus 85 ~~lLaT~~~~L~L~dt 100 (244)
+|+.+. -+.|.++-.
T Consensus 445 t~L~~~-g~~l~Vy~~ 459 (506)
T KOG0289|consen 445 TYLGIA-GSDLQVYIC 459 (506)
T ss_pred CeEEee-cceeEEEEE
Confidence 999877 444555543
No 120
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.60 E-value=0.00015 Score=73.74 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=61.2
Q ss_pred CCCceeEEEecCCC-c-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 29 RGTNFQCFASTGDG-S-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 29 ~~~~Ft~vats~~G-~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
-..+++++.++|-. . +|++|.|-.|+|||..+++ -+..|-||-|-|-+++.||||+.+..-|+ .+|++++-+
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence 34568899999933 3 8999999999999998764 56678999999999999999999988896 779998753
No 121
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.58 E-value=0.00045 Score=65.64 Aligned_cols=112 Identities=17% Similarity=0.230 Sum_probs=81.4
Q ss_pred cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC-CEEEEeCC-cceEEEEeeeccCCCCcccccccccCCC
Q 044877 43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG-RWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNK 120 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG-~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~ 120 (244)
.+|+|+.-|.||+.|..++++.+ .+-|||+.|..|.+-|+- ++||+.++ ..||||+.+-
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~------------------ 167 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT------------------ 167 (385)
T ss_pred eEEeecceeEEEEEecchhhhcc-ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC------------------
Confidence 38889999999999998887777 688999999999999887 67777774 7799999752
Q ss_pred CCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech--hhhcCCccc
Q 044877 121 IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ--QVKNGSHEC 184 (244)
Q Consensus 121 kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~--kV~~g~~~~ 184 (244)
..++.+-- -++||--.-=+.-|+ + + +++..+.-.+--+.+|++. ++++.-..+
T Consensus 168 ---~~Cv~VfG---G~egHrdeVLSvD~~--~-~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s 222 (385)
T KOG1034|consen 168 ---DVCVAVFG---GVEGHRDEVLSVDFS--L-D--GDRIASCGMDHSLKLWRLNVKEFKNKLELS 222 (385)
T ss_pred ---CeEEEEec---ccccccCcEEEEEEc--C-C--CCeeeccCCcceEEEEecChhHHhhhhhhh
Confidence 23443000 123443333355666 2 3 5789899999999999998 666554433
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.57 E-value=0.00055 Score=69.36 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=76.7
Q ss_pred EEecCCCcEEEeCC-CCcEEEEeccccccceec-------CCCC---CCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877 36 FASTGDGSIVVGSL-DGKIRLYSSNSMRQAKTA-------FPGL---GSPIRYVDVTYDGRWILGTT-DTYLILICTLFT 103 (244)
Q Consensus 36 vats~~G~IavGS~-dG~IRLyD~~~~r~aKt~-------lpgl---GdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~ 103 (244)
+.+=.+-.||+++. ||.||+||++...++.-. +|-. ---++.+.+-.-|.+|+|+| ++.|.+|++.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~-- 301 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR-- 301 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc--
Confidence 33333445999888 999999999754433111 1111 12367777778889999999 5889999974
Q ss_pred cCCCCcccccccccCCCCCcceeeeeCccchhhcCC-ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877 104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGV-NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177 (244)
Q Consensus 104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~-~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV 177 (244)
.|.+.|.- .+.|+ .-.|+..... ...++.++.||.+.-+++|.+...
T Consensus 302 ----------------------s~s~sP~~-~~sg~~~~sf~vks~l----Spd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 302 ----------------------SLSISPVA-EFSGKLNSSFYVKSEL----SPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred ----------------------ccCcCchh-hccCcccceeeeeeec----CCCCceEeccCCCcceeeeeecCc
Confidence 23333332 24454 3577777665 234799999999999999999864
No 123
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.57 E-value=0.00018 Score=69.03 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=56.7
Q ss_pred CCceeEEEecCCC--cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877 30 GTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT 100 (244)
Q Consensus 30 ~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt 100 (244)
..-+.|+|-+|+- .+|+||-||.|||||.....+.+ .+..+-.+|.+|+++. +.++-+.-+++++.|-.
T Consensus 66 rdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 66 RDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-TFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred ccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-eeecccCceeeEEecc-cceEEecCCcceeeeec
Confidence 3447899999964 39999999999999997766666 4677888999999999 66665666799999974
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.56 E-value=0.00051 Score=66.97 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=50.8
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeee
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLF 102 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~ 102 (244)
+|+||.|-+|.|||.-++++++ .++.+|.+|..+.+.| ...+||+.| +.++.|.|.+.
T Consensus 259 LaSgsaD~TV~lWD~~~g~p~~-s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 259 LASGSADKTVKLWDVDTGKPKS-SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred EEecCCCceEEEEEcCCCCcce-ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 8999999999999999997666 6889999999999985 567777777 68899999875
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.56 E-value=0.00011 Score=75.05 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
.-+.++|+++|.|+ .|.||.|+++.+||.+.+-|.++ ..++-.-+-.+.+||||+|+....+ +.++|||...
T Consensus 112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a 185 (825)
T KOG0267|consen 112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA 185 (825)
T ss_pred ccCcceeeeccceEEeccccccccceehhhhccCceee-ecCCcceeEEEeecCCCceeeccCCcceeeeecccc
Confidence 44678999999998 89999999999999986556774 5676667888899999999998775 8899999753
No 126
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.56 E-value=0.00073 Score=69.57 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=65.5
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD 104 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~ 104 (244)
-.=-++..|++.||+|. +|+|=.|.++++|=.-+.+ -...|=||.-||++||+|||++.|+..+ +..+.+|=..+.|
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD 583 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD 583 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch
Confidence 33446789999999998 9999999999999887775 4556779999999999999999987554 6889999998865
No 127
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.55 E-value=0.0002 Score=66.56 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=61.5
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
..+.+.+...+-|. |++|..||.|+.||.+++......-.-|+..|..|.+|+|..+.+..|. ++-.|||..
T Consensus 147 ~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 147 DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR 220 (327)
T ss_pred ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence 35578888889776 9999999999999998876565566678999999999999999998885 779999964
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.54 E-value=0.0011 Score=67.63 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=35.3
Q ss_pred CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877 31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILIC 99 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~d 99 (244)
.+..|++...+|.+++||-|-..|+|-.. .+...++||-.+|..|..-|++++|=+..+.+|+||.
T Consensus 102 snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 102 SNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK 167 (745)
T ss_pred cceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCCcEEeccCcceeeecc
Confidence 34555555555555666666666666551 2222355555555555555555444344455555554
No 129
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.54 E-value=0.0029 Score=52.98 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=55.7
Q ss_pred CceeEEEecCCCc-EEEeCC-CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-C-CcceEEEEee
Q 044877 31 TNFQCFASTGDGS-IVVGSL-DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-T-DTYLILICTL 101 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~-dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~-~~~L~L~dt~ 101 (244)
..+.+++++++|. +++++. ||.+++||....+... .+.++..+|..++++|+|.+++++ . +..|++||..
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS-TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE-eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 3467999999995 888885 9999999997654444 467789999999999999955555 3 5779999653
No 130
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.0014 Score=60.21 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=83.2
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT 109 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~ 109 (244)
-+++||.+|.|. +|+|..|-.+-|||.+++|..+.+-| +...|.+|.|||-..|+|..+ +..|+|-|.+ . +
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlq-g--d--- 305 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-G--D--- 305 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccceEEEeecc-c--c---
Confidence 478999999999 89999999999999999998875555 999999999999999998655 6889998864 1 1
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCCccceeee-eeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA-QFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a-kFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
+ . +..|..+- .| +.- ++ .+.|.+ +.=..|.+|.++-+-.|-+
T Consensus 306 -l--a------~el~~~vv--~e------hkd---k~i~~rwh~---~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 306 -L--A------HELPIMVV--AE------HKD---KAIQCRWHP---QDFSFISSSADKTATLWAL 348 (350)
T ss_pred -h--h------hcCceEEE--Ee------ccC---ceEEEEecC---ccceeeeccCcceEEEecc
Confidence 1 1 01222221 11 111 23 566654 2456789999999999965
No 131
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.53 E-value=0.0015 Score=60.75 Aligned_cols=69 Identities=13% Similarity=0.257 Sum_probs=58.0
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccc--cccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNS--MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL 101 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~--~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~ 101 (244)
.-+.+||.+|.|+ +|+||.|..+-+|-... ..+ -..|.||-..|.+|++|++|.|| ||| ++.+-+|.+.
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec-v~~lEGHEnEVK~Vaws~sG~~L-ATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC-VATLEGHENEVKCVAWSASGNYL-ATCSRDKSVWIWEID 135 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeE-EeeeeccccceeEEEEcCCCCEE-EEeeCCCeEEEEEec
Confidence 3467889999998 99999999999998853 233 34689999999999999999998 666 4889999975
No 132
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.52 E-value=0.00095 Score=61.44 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=84.3
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CCcceEEEEeeeccCCCCc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TDTYLILICTLFTDKNGTT 109 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~~L~L~dt~~~~~~~~~ 109 (244)
...+|..+.+|. ..+++.|-.||||.-..+...|| ..|+|..|..+++|.|..-+.+. -+.-+.+||..- |
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt-YsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T------G 91 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT-YSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT------G 91 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeee-ecCCCceeeeccccccccccccCCCCceEEEEEccc------C
Confidence 477899999997 88899999999999987777785 68999999999999998887433 268899999842 1
Q ss_pred ccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
..-|+++ ||.-....-+|| ....-+..+|.+.-+=.||-+
T Consensus 92 ------------kv~Rr~r---------gH~aqVNtV~fN-----eesSVv~SgsfD~s~r~wDCR 131 (307)
T KOG0316|consen 92 ------------KVDRRFR---------GHLAQVNTVRFN-----EESSVVASGSFDSSVRLWDCR 131 (307)
T ss_pred ------------eeeeecc---------cccceeeEEEec-----CcceEEEeccccceeEEEEcc
Confidence 1334444 544334456898 224566677889999999965
No 133
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.52 E-value=0.0008 Score=65.85 Aligned_cols=131 Identities=15% Similarity=0.302 Sum_probs=98.8
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTT 109 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~ 109 (244)
...|+|.+++|. ||+|..|-.|-+||..+..-.+ .+++|-++|.+++|=..-.-+.++| +.++.+|+...
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~------- 275 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ------- 275 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhh-cccccccceeeeeeecCccceeeeecCCceEEEehhH-------
Confidence 478999999998 9999999999999999887556 5899999999999985555555565 67899998643
Q ss_pred ccccccc---------------------cCCCCCcceeeeeCccch--hhcCCccceeeeeeeeecCCCCcceEEEEeeC
Q 044877 110 KTGFNGR---------------------MGNKIAAPRLLKLTPLDS--HLAGVNNKFHKAQFSWVTENGKQERHLVATVG 166 (244)
Q Consensus 110 ~~GF~~~---------------------~~~~kp~pr~L~L~Pe~~--~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG 166 (244)
++|... .|.+--.-|+-+| ||.. .|.|+.-++....|= ..|..+++|..
T Consensus 276 -~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~I------n~~HfvsGSdn 347 (479)
T KOG0299|consen 276 -LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFI------NDEHFVSGSDN 347 (479)
T ss_pred -hHHHHHHhCCccceeeechhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEe------cccceeeccCC
Confidence 222221 1222234566676 7775 455666788888885 16999999999
Q ss_pred CeEEEEechhhh
Q 044877 167 KFSVIWNFQQVK 178 (244)
Q Consensus 167 ~fvvvWn~~kV~ 178 (244)
.-+..|++.+-+
T Consensus 348 G~IaLWs~~KKk 359 (479)
T KOG0299|consen 348 GSIALWSLLKKK 359 (479)
T ss_pred ceEEEeeecccC
Confidence 999999997643
No 134
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00021 Score=68.78 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=66.0
Q ss_pred ceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cce
Q 044877 18 VLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYL 95 (244)
Q Consensus 18 ~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L 95 (244)
+|.|.+. -++++-.+|++.+++|. +|+|+.||.|-+|+...+++.+..=..|+--||+|.|+||.++++.++. +..
T Consensus 271 ~l~~~~~--~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~ 348 (398)
T KOG0771|consen 271 FLRLRKK--IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEA 348 (398)
T ss_pred ccchhhh--hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCce
Confidence 4444443 45566799999999999 9999999999999999888777433468889999999999999998874 667
Q ss_pred EEEEee
Q 044877 96 ILICTL 101 (244)
Q Consensus 96 ~L~dt~ 101 (244)
.+.-..
T Consensus 349 ~v~~l~ 354 (398)
T KOG0771|consen 349 AVTKLA 354 (398)
T ss_pred eEEEEe
Confidence 775543
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.49 E-value=0.0005 Score=64.87 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=76.7
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe--CCcceEEEEeeeccCCCCcccccccccCCCC
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT--TDTYLILICTLFTDKNGTTKTGFNGRMGNKI 121 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT--~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~k 121 (244)
||+|..+=.|||.|...+...- .|.||-+-|.+|+.||-..||||| |+..++|||.+-- +|=-.-|....
T Consensus 161 iA~gtr~~~VrLCDi~SGs~sH-~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-------sgcf~~lD~hn 232 (397)
T KOG4283|consen 161 IAAGTRDVQVRLCDIASGSFSH-TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-------SGCFRVLDQHN 232 (397)
T ss_pred EEEecCCCcEEEEeccCCccee-eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc-------cceeEEeeccc
Confidence 9999999999999999887666 589999999999999999999988 5799999998631 12222333111
Q ss_pred -CcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 122 -AAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 122 -p~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
..|-.|+-+|.|- -+|..+-|. .+ +.......++.-.-+||.++
T Consensus 233 ~k~~p~~~~n~ah~------gkvngla~t---Sd--~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 233 TKRPPILKTNTAHY------GKVNGLAWT---SD--ARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred CccCcccccccccc------ceeeeeeec---cc--chhhhhccCccceEEeeccc
Confidence 1222334333322 233344443 12 34555556777778888765
No 136
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.48 E-value=0.00072 Score=71.09 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=79.6
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccc------cc-----------cceecCCCCCCCeeEEEeCCCCCEEEEeC-Cc
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNS------MR-----------QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DT 93 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~------~r-----------~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~ 93 (244)
.+||-++++|. +|+||.|..|-+|+... .. +....|-+|-..|..|..|||+.|+++-+ ++
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 68999999998 99999999999999861 10 24446788999999999999999998776 68
Q ss_pred ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
++.||+.+- |+ +++.---|..+. +.+.|.|+ +....+.|.++-+.+|.
T Consensus 152 sViiwn~~t----------F~-----------~~~vl~~H~s~V-KGvs~DP~----------Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 152 SVIIWNAKT----------FE-----------LLKVLRGHQSLV-KGVSWDPI----------GKYFASQSDDRTLKVWR 199 (942)
T ss_pred eEEEEcccc----------ce-----------eeeeeecccccc-cceEECCc----------cCeeeeecCCceEEEEE
Confidence 999999752 53 233111111111 12334442 45666778888999998
Q ss_pred chh
Q 044877 174 FQQ 176 (244)
Q Consensus 174 ~~k 176 (244)
..+
T Consensus 200 t~d 202 (942)
T KOG0973|consen 200 TSD 202 (942)
T ss_pred ccc
Confidence 443
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=97.45 E-value=0.00021 Score=67.39 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=54.2
Q ss_pred CceeEEEecCCCc--EEEeCCCCcEEEEecccc----c-----cce-----ecCCCCCCCeeEEEeCCCCCEEE-EeCCc
Q 044877 31 TNFQCFASTGDGS--IVVGSLDGKIRLYSSNSM----R-----QAK-----TAFPGLGSPIRYVDVTYDGRWIL-GTTDT 93 (244)
Q Consensus 31 ~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~----r-----~aK-----t~lpglGdPI~~vdvS~DG~~lL-aT~~~ 93 (244)
..+.+|..+|.-. +|+||.||.|||||.+.- + +.| .+=+.+-..+-++++|.||++++ +++++
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 4578999999654 899999999999998521 0 111 01245567889999999999997 56689
Q ss_pred ceEEEEee
Q 044877 94 YLILICTL 101 (244)
Q Consensus 94 ~L~L~dt~ 101 (244)
.+++|+..
T Consensus 269 r~r~wn~~ 276 (397)
T KOG4283|consen 269 RIRVWNME 276 (397)
T ss_pred ceEEeecc
Confidence 99999974
No 138
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.44 E-value=0.0007 Score=69.44 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=87.8
Q ss_pred eecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccc--------------------------------cc---
Q 044877 19 LNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS--------------------------------MR--- 62 (244)
Q Consensus 19 ~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~--------------------------------~r--- 62 (244)
+...|.-+-+.+.-+.|+-++++|. +|+|+.||.||+|-... ..
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3444444446677799999999998 99999999999998754 00
Q ss_pred ----------cc--------------eecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccccccccc
Q 044877 63 ----------QA--------------KTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRM 117 (244)
Q Consensus 63 ----------~a--------------Kt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~ 117 (244)
.+ -..+-||-+.|..|..|.++ +||+.+ +.++|||+..-
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~--------------- 399 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR--------------- 399 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC---------------
Confidence 00 01133666788888888886 555666 59999999632
Q ss_pred CCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 118 GNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 118 ~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
..+|+ .+. |+-=-|+..|+.+ + ....|.+|-+.-+=+|+..
T Consensus 400 ------~~CL~------~F~-HndfVTcVaFnPv--D--DryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 400 ------KECLK------VFS-HNDFVTCVAFNPV--D--DRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred ------cceee------EEe-cCCeeEEEEeccc--C--CCcEeecccccceEEeecC
Confidence 23566 333 4444588899943 3 6899999999999999764
No 139
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.44 E-value=0.00031 Score=66.54 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=51.9
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~ 101 (244)
.-.++++++|. +++.+.||.|.++|..+.+..++ ++ .|..-.+|++|+||+||+++| .+.+.++|+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~-i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT-IK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-EE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-Ee-cCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 34577899997 88899999999999998887775 45 676778999999999999887 4789999963
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=97.43 E-value=0.00076 Score=65.04 Aligned_cols=71 Identities=10% Similarity=0.210 Sum_probs=55.5
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccc--eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeee
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQA--KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLF 102 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~a--Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~ 102 (244)
++..+..+..-. ||+|+.||.+++||++..+-. --.+..|.+||++|..+|...-+++.+ ++.|-|||...
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 455666776544 999999999999999865422 123567999999999998887777654 68899999875
No 141
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00069 Score=71.00 Aligned_cols=111 Identities=20% Similarity=0.207 Sum_probs=85.0
Q ss_pred eeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcc
Q 044877 33 FQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTK 110 (244)
Q Consensus 33 Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~ 110 (244)
.-.++++|.- .|.++-..|.|+|||-+.+...- -++.|-.||.+|+|.|++-..++.-++| |++|+..
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~-rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk--------- 81 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID-RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK--------- 81 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHh-hhhccCCccceeeecCCCCeEEecCCccEEEEEecc---------
Confidence 5688999963 49999999999999997654332 4677899999999999999999999988 9999963
Q ss_pred cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
.-|+|- ++.||----..--|.. .-.=+|++|-+.-+-+||.+.
T Consensus 82 ------------~rrclf------tL~GHlDYVRt~~FHh-----eyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 82 ------------TRRCLF------TLLGHLDYVRTVFFHH-----EYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred ------------cceehh------hhccccceeEEeeccC-----CCceEEEccCCCeEEEEeccC
Confidence 235555 6777742222235552 145678899999999999874
No 142
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.0015 Score=60.43 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=54.3
Q ss_pred ccCCCCc-eeEEEe-cCCCcEEEeCCCCcEEEEeccccccceecC---------CCCCCCeeEEEeCCCCCEEEEeCCcc
Q 044877 26 QFSRGTN-FQCFAS-TGDGSIVVGSLDGKIRLYSSNSMRQAKTAF---------PGLGSPIRYVDVTYDGRWILGTTDTY 94 (244)
Q Consensus 26 ~Y~~~~~-Ft~vat-s~~G~IavGS~dG~IRLyD~~~~r~aKt~l---------pglGdPI~~vdvS~DG~~lLaT~~~~ 94 (244)
.|...++ .-||+. +.+|+|.+|++||.+|+||.++.++.++.- |.-|.=|-.+++ |..|++|.--..
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~ 228 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK 228 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc
Confidence 4555555 457776 679999999999999999999887655422 334444555554 667999888788
Q ss_pred eEEEEee
Q 044877 95 LILICTL 101 (244)
Q Consensus 95 L~L~dt~ 101 (244)
|-||+..
T Consensus 229 lslwhLr 235 (325)
T KOG0649|consen 229 LSLWHLR 235 (325)
T ss_pred eeEEecc
Confidence 9999964
No 143
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.41 E-value=0.00024 Score=44.76 Aligned_cols=29 Identities=31% Similarity=0.604 Sum_probs=25.9
Q ss_pred CCCceeEEEecCCCc-EEEeCCCCcEEEEe
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYS 57 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD 57 (244)
-....++++.+|++. ||+||.||.||+||
T Consensus 10 h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345689999999977 99999999999998
No 144
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.00017 Score=73.80 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=74.3
Q ss_pred ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877 26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT 103 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~ 103 (244)
-|...-++-|+.++.+-. |++|+.+|.||+||+...+..+| |-||-++|++|++.|=|.|....+ ++-+.+||.+.+
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt-Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT-LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh-hhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 456667788999999644 99999999999999976554454 678999999999999999997666 466999998732
Q ss_pred cCCCCcccccccccCCCCCcceeeeeCccc
Q 044877 104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLD 133 (244)
Q Consensus 104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~ 133 (244)
|-..+++.-...-+.|+|.|-.
T Consensus 145 --------Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 145 --------GCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred --------CceeeecCCcceeEEEeecCCC
Confidence 2333333222345677777765
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.31 E-value=0.011 Score=49.55 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=55.6
Q ss_pred CCCceeEEEecCCCc-EEEe-CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877 29 RGTNFQCFASTGDGS-IVVG-SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF 102 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavG-S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~ 102 (244)
.....++++.+++|. ++++ +.||.|++||...+....+.+.++.+.. -..+++++.++++.+ +..+++||...
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence 356699999999986 5555 9999999999875544443577787775 348999997777555 47799999853
No 146
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.0049 Score=56.74 Aligned_cols=135 Identities=18% Similarity=0.220 Sum_probs=86.4
Q ss_pred CCc-EEEeCCCCcEEEEeccccccceec---CCCCC---CCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccc
Q 044877 41 DGS-IVVGSLDGKIRLYSSNSMRQAKTA---FPGLG---SPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTG 112 (244)
Q Consensus 41 ~G~-IavGS~dG~IRLyD~~~~r~aKt~---lpglG---dPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~G 112 (244)
+|. +|+||.|-.||.||++-.-+..|+ +.+-| ..|.+|+|-|.|+.|++.- ++.-+|+|.+
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir----------- 261 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR----------- 261 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee-----------
Confidence 455 899999999999999754444432 23344 7899999999999887664 5779999974
Q ss_pred cccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCc
Q 044877 113 FNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLK 192 (244)
Q Consensus 113 F~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~ 192 (244)
..|.+| .+.-+.......+|+ ++ .-..+..|-+.-+-+=|++-=+.-++.
T Consensus 262 ----------g~r~iq------~f~phsadir~vrfs--p~---a~yllt~syd~~ikltdlqgdla~el~--------- 311 (350)
T KOG0641|consen 262 ----------GGRMIQ------RFHPHSADIRCVRFS--PG---AHYLLTCSYDMKIKLTDLQGDLAHELP--------- 311 (350)
T ss_pred ----------CCceee------eeCCCccceeEEEeC--CC---ceEEEEecccceEEEeecccchhhcCc---------
Confidence 224444 343344445566887 32 466777777777777776655544443
Q ss_pred eeeeeEEEecCccccccceecCccccC
Q 044877 193 SCYCYKIVLKDDSIVDSRFMHDKFAVS 219 (244)
Q Consensus 193 ~~~~Y~i~~~~e~iv~~~f~~d~f~~~ 219 (244)
...+.--.+.++.-+.-..+|.|=
T Consensus 312 ---~~vv~ehkdk~i~~rwh~~d~sfi 335 (350)
T KOG0641|consen 312 ---IMVVAEHKDKAIQCRWHPQDFSFI 335 (350)
T ss_pred ---eEEEEeccCceEEEEecCccceee
Confidence 122233334455555556666663
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.29 E-value=0.00049 Score=70.78 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=61.1
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEeC----CcceEEEEee
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGTT----DTYLILICTL 101 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT~----~~~L~L~dt~ 101 (244)
+-+-+..|+..+|++. ||+|+.|+.||+||..+.+ ++. +--.-+.|+.-|.+=|+-++.|||| ++.|.+||.+
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~-~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR-AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCC-ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 5566789999999876 9999999999999997654 431 1124689999999999999999999 2559999986
Q ss_pred e
Q 044877 102 F 102 (244)
Q Consensus 102 ~ 102 (244)
-
T Consensus 297 R 297 (839)
T KOG0269|consen 297 R 297 (839)
T ss_pred c
Confidence 3
No 148
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.0017 Score=64.91 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=61.4
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEecc---------ccccceecCCCCCCCeeEEEeCCCCCEEEEe-CCcce
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSN---------SMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TDTYL 95 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~---------~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~~~L 95 (244)
|+-.-++-||+..++|+ +++|+.||.||+|... ......+.|-|+.|.|..+..|+.-..||+. ++.++
T Consensus 341 raH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTv 420 (577)
T KOG0642|consen 341 RAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTV 420 (577)
T ss_pred ecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceE
Confidence 45567899999999998 9999999999999332 1224556788999999999999888888754 47999
Q ss_pred EEEEee
Q 044877 96 ILICTL 101 (244)
Q Consensus 96 ~L~dt~ 101 (244)
++|+..
T Consensus 421 r~w~~~ 426 (577)
T KOG0642|consen 421 RLWEPT 426 (577)
T ss_pred EeeccC
Confidence 999975
No 149
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=7.3e-05 Score=74.52 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=37.9
Q ss_pred eeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877 193 SCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISS 241 (244)
Q Consensus 193 ~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~ 241 (244)
.-|||+|++|...++ +|||.||++ +.||||+|+||.+++.++
T Consensus 579 ~~~~Yri~r~~~~v~-----adnf~fg~d--s~Viv~l~dDv~~v~~~s 620 (644)
T KOG2395|consen 579 KHYSYRIRRYLALVV-----ADNFEFGED--SIVIVALPDDVFKVSVRS 620 (644)
T ss_pred Ccchhhhhhhcccee-----EeeEEecCC--ceEEEecccchhhhcccc
Confidence 357899999999988 999999985 899999999999999875
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.25 E-value=0.00095 Score=68.76 Aligned_cols=116 Identities=20% Similarity=0.254 Sum_probs=76.8
Q ss_pred eeEEEecC-CC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC-CCEEEEeCC-cceEEEEeeeccCCCC
Q 044877 33 FQCFASTG-DG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD-GRWILGTTD-TYLILICTLFTDKNGT 108 (244)
Q Consensus 33 Ft~vats~-~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D-G~~lLaT~~-~~L~L~dt~~~~~~~~ 108 (244)
..++.+++ +- .|++||.||.|++||.+..+ .+.++-+-.+.|..|.++|- +....++.+ .+|+|||.+..+
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---- 210 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---- 210 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch----
Confidence 34555555 22 48999999999999998654 44456677889999999954 555556666 779999987532
Q ss_pred cccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877 109 TKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180 (244)
Q Consensus 109 ~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g 180 (244)
--.+|| +...+++ -..||.+ ..+-+..+.-++.+-+||+-.=+.+
T Consensus 211 ---------------r~~~k~-----~AH~GpV----~c~nwhP---nr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 211 ---------------RCEKKL-----TAHNGPV----LCLNWHP---NREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred ---------------hHHHHh-----hcccCce----EEEeecC---CCceeeecCCCccEEEEeccCCCcc
Confidence 111110 1111222 3678875 2566777777899999999854433
No 151
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.20 E-value=0.0035 Score=64.09 Aligned_cols=102 Identities=23% Similarity=0.237 Sum_probs=78.0
Q ss_pred ceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCccc
Q 044877 32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKT 111 (244)
Q Consensus 32 ~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~ 111 (244)
...+|++=+++.+++||.|-.||||-. ++..+| |.||-|-|.++++-+++.+|=|.-+..|++|+.
T Consensus 142 sVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~t-f~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~----------- 207 (745)
T KOG0301|consen 142 SVWAVASLPENTYVTGSADKTIKLWKG--GTLLKT-FSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL----------- 207 (745)
T ss_pred heeeeeecCCCcEEeccCcceeeeccC--Cchhhh-hccchhheeeeEEecCCCeEeecCCceEEEEec-----------
Confidence 378899999989999999999999997 788885 788999999999999999987777899999993
Q ss_pred ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEE
Q 044877 112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSV 170 (244)
Q Consensus 112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvv 170 (244)
..-+|. .+.||. +|.. +.. . --....||++...--+
T Consensus 208 -----------~ge~l~------~~~ght-n~vY---sis-~-~~~~~~Ivs~gEDrtl 243 (745)
T KOG0301|consen 208 -----------DGEVLL------EMHGHT-NFVY---SIS-M-ALSDGLIVSTGEDRTL 243 (745)
T ss_pred -----------cCceee------eeeccc-eEEE---EEE-e-cCCCCeEEEecCCceE
Confidence 677777 555554 4443 321 1 2366666666654443
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.20 E-value=0.0023 Score=66.14 Aligned_cols=148 Identities=16% Similarity=0.243 Sum_probs=111.8
Q ss_pred cceeeecccCCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCC-C
Q 044877 6 GIVQNLANAGAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTY-D 83 (244)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~-D 83 (244)
|--|-|..+++|...-+.-..|..++-|.|++.+|+|+ +|+|.--|.||+||+...+ -.++++.|-..|.++..|. +
T Consensus 435 ~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~-~~~~~eAHesEilcLeyS~p~ 513 (1080)
T KOG1408|consen 435 STQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE-YTCFMEAHESEILCLEYSFPV 513 (1080)
T ss_pred CchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh-hhhheecccceeEEEeecCch
Confidence 34466777888888888888899999999999999998 9999999999999997664 4557899999999999983 3
Q ss_pred -CCEEEE-eCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceE
Q 044877 84 -GRWILG-TTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERH 160 (244)
Q Consensus 84 -G~~lLa-T~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~ 160 (244)
++-||| ++++. |.++|+.. + |. ++| ++-||.-+-|.-||-- .|-+-+.
T Consensus 514 ~~~kLLASasrdRlIHV~Dv~r----n-----y~-----------l~q------tld~HSssITsvKFa~---~gln~~M 564 (1080)
T KOG1408|consen 514 LTNKLLASASRDRLIHVYDVKR----N-----YD-----------LVQ------TLDGHSSSITSVKFAC---NGLNRKM 564 (1080)
T ss_pred hhhHhhhhccCCceEEEEeccc----c-----cc-----------hhh------hhcccccceeEEEEee---cCCceEE
Confidence 444554 45554 88888742 1 33 444 7788888889999973 3336777
Q ss_pred EEEeeCCeEEEEechhhhcCCcc
Q 044877 161 LVATVGKFSVIWNFQQVKNGSHE 183 (244)
Q Consensus 161 IvtStG~fvvvWn~~kV~~g~~~ 183 (244)
|..-.++-++.=-++|--.|..-
T Consensus 565 iscGADksimFr~~qk~~~g~~f 587 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLF 587 (1080)
T ss_pred EeccCchhhheehhccccCceec
Confidence 77777777776666665555543
No 153
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00093 Score=64.40 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
-++.+|++.+|+|+ |++|...|.+-.||.++++-....+.|+...|.+|...|.+++|+++. +.|||+.|+.
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK 320 (412)
T ss_pred cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence 45689999999998 999999999999999888766766889999999999999999997766 6899999975
No 154
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.11 E-value=0.0064 Score=59.93 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=61.0
Q ss_pred ceecccccccC----CCCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877 18 VLNWSQGHQFS----RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGTT 91 (244)
Q Consensus 18 ~~~~~~~k~Y~----~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT~ 91 (244)
.|+..--|+.- +.-..+||.++|.-. +.|++.||.+|+|-.-+.++-+. .+---+-||....|.|+|+-.++++
T Consensus 197 tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s 276 (514)
T KOG2055|consen 197 TLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS 276 (514)
T ss_pred eeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec
Confidence 44555445442 334589999999877 89999999999998865443321 2222367999999999999666554
Q ss_pred --CcceEEEEee
Q 044877 92 --DTYLILICTL 101 (244)
Q Consensus 92 --~~~L~L~dt~ 101 (244)
+.|+..||..
T Consensus 277 ~rrky~ysyDle 288 (514)
T KOG2055|consen 277 GRRKYLYSYDLE 288 (514)
T ss_pred ccceEEEEeecc
Confidence 4899999975
No 155
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.10 E-value=0.0006 Score=67.93 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=59.1
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF 102 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~ 102 (244)
-.++|.++|.. ..++..||.|++||+......+ .|+|+-|-..+||+|+||.-|-..- ++++|-||.+.
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr-qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR-QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccceeee-cccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 34688899988 5677899999999998776666 5899999999999999999998766 69999999864
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.00095 Score=62.68 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=52.5
Q ss_pred CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877 31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91 (244)
Q Consensus 31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~ 91 (244)
.|+.+++++| .|.+|+|+.||.|-.||....|+.+ .|++.-..|.+++++-||..|+.++
T Consensus 233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~-q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLK-QLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EEeceeEeccccceEEecCCCceEEEccCcchhhhh-hccCCCCceEEEEeccCCCeEEEEe
Confidence 4678899999 7889999999999999998888777 5777878899999999999997554
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0023 Score=67.85 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=57.8
Q ss_pred ccCCCCceeEEEecCCCc-----EEEeCCCCcEEEEecccc--ccc---eecCCCCCCCeeEEEeCCCCCEEEEeCC--c
Q 044877 26 QFSRGTNFQCFASTGDGS-----IVVGSLDGKIRLYSSNSM--RQA---KTAFPGLGSPIRYVDVTYDGRWILGTTD--T 93 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~-----IavGS~dG~IRLyD~~~~--r~a---Kt~lpglGdPI~~vdvS~DG~~lLaT~~--~ 93 (244)
...+++.|..++..+.|. ||.|.+||.|-|||.... ..+ -....-|..+|.++||.+.+.-+||.+. .
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 346788999999988442 899999999999998642 111 1123567889999999999997777763 5
Q ss_pred ceEEEEe
Q 044877 94 YLILICT 100 (244)
Q Consensus 94 ~L~L~dt 100 (244)
-|.|||.
T Consensus 140 eI~iWDl 146 (1049)
T KOG0307|consen 140 EILIWDL 146 (1049)
T ss_pred cEEEecc
Confidence 5999996
No 158
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.0063 Score=61.98 Aligned_cols=115 Identities=15% Similarity=0.273 Sum_probs=84.3
Q ss_pred ceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCccc
Q 044877 32 NFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKT 111 (244)
Q Consensus 32 ~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~ 111 (244)
-..++|..+.|.+.+.+.+|.|-=||..++++-+ .++..|.+|-+|++.|-+.-++..|++. .|++-.+ +.++.
T Consensus 71 sIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~-~~d~~gg~IWsiai~p~~~~l~IgcddG-vl~~~s~----~p~~I 144 (691)
T KOG2048|consen 71 SIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKY-NIDSNGGAIWSIAINPENTILAIGCDDG-VLYDFSI----GPDKI 144 (691)
T ss_pred ceeeEEEccCCeEEeecCCceEEEEecccCceeE-EecCCCcceeEEEeCCccceEEeecCCc-eEEEEec----CCceE
Confidence 3789999999999999999999999999887555 5788999999999999999999999877 4445443 23345
Q ss_pred ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
=|.+.|+.. ..|.|.| .|+ + ..-+++.+|.|.-+.+||.++
T Consensus 145 ~~~r~l~rq--~sRvLsl-----------------sw~--~---~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 145 TYKRSLMRQ--KSRVLSL-----------------SWN--P---TGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred EEEeecccc--cceEEEE-----------------Eec--C---CccEEEecccCceEEEEEcCC
Confidence 577766533 3455552 222 1 134566677777777777654
No 159
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.04 E-value=0.0024 Score=63.95 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=55.9
Q ss_pred CCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
-+.+..|.|.+|+.. +++|..||.|+|||...+ .+ .+-...-..+.|+..|||..+++.+. .-|.+||.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCC-ee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 345678899999766 999999999999998432 12 22345567899999999999998776 6699999864
No 160
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.01 E-value=0.015 Score=52.54 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=47.9
Q ss_pred eeEEEecCCCc-EEEeC-CCCcEEEEeccc-cccc--eecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877 33 FQCFASTGDGS-IVVGS-LDGKIRLYSSNS-MRQA--KTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~-IavGS-~dG~IRLyD~~~-~r~a--Kt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~ 101 (244)
-..++++++|. |++++ .+|.|.+||... +... ...+++. ....+++++|||+++++++. +.|.+||..
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 35799999998 66665 489999998842 1111 1123332 34577899999999987773 779999974
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.95 E-value=0.0048 Score=58.86 Aligned_cols=123 Identities=16% Similarity=0.303 Sum_probs=85.4
Q ss_pred cCCCCceeEEEecCC--CcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeee
Q 044877 27 FSRGTNFQCFASTGD--GSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLF 102 (244)
Q Consensus 27 Y~~~~~Ft~vats~~--G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~ 102 (244)
+..+--.+|+|++|. +..|+||.-..+=||.--+++-.. +|-|++.-|||+.+-+||..+.+.+ +.+|+-||.+.
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-LLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRY 282 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-eecccCCCeeeEEeccCcCeecccccCCCeEEEEeehh
Confidence 444555899999993 359999998887777654454344 5679999999999999999999775 58899999863
Q ss_pred ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
. .. |. ..|. ...+. .-..-.|+. +..+|-...++++.+|-+||+++.-
T Consensus 283 ~-----~~-----------pv-~~L~------rhv~~--TNQRI~FDl---d~~~~~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 283 S-----RD-----------PV-YALE------RHVGD--TNQRILFDL---DPKGEILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred c-----cc-----------hh-hhhh------hhccC--ccceEEEec---CCCCceeeccCCCccEEEEecCCCC
Confidence 1 00 11 1111 11111 112457773 2346888888899999999999843
No 162
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.88 E-value=0.0019 Score=64.57 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=57.5
Q ss_pred CCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877 16 APVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T 93 (244)
Q Consensus 16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~ 93 (244)
.||..|.-+.. .....++++||. +|+-|.||.+|+||--++. ..-.+...=.-...|+.|||||||+..-. +
T Consensus 281 NPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 281 NPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred CccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 56777765544 455678999997 9999999999999986553 11111112235789999999999987774 6
Q ss_pred ceEEEEe
Q 044877 94 YLILICT 100 (244)
Q Consensus 94 ~L~L~dt 100 (244)
-+.+|-.
T Consensus 355 LVtVwSf 361 (636)
T KOG2394|consen 355 LVTVWSF 361 (636)
T ss_pred eEEEEEe
Confidence 6888874
No 163
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.87 E-value=0.0082 Score=61.24 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=67.9
Q ss_pred CCcEEEEeccc----cccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEeeeccCCCCcccccccccCCCCCc
Q 044877 50 DGKIRLYSSNS----MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTLFTDKNGTTKTGFNGRMGNKIAA 123 (244)
Q Consensus 50 dG~IRLyD~~~----~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~ 123 (244)
++.|.+.|..+ .....-.+| .|..--+|++||||+|++++.+ +++-++|+.-. +--|+. +
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~------k~~~~~----~--- 360 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL------DDLFDG----K--- 360 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh------hhhhhc----c---
Confidence 46799999876 222333456 8999999999999999999985 77999998521 112332 1
Q ss_pred ceeeeeCccchhhcCCccceeee--eeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 124 PRLLKLTPLDSHLAGVNNKFHKA--QFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 124 pr~L~L~Pe~~~~~G~~~~Ft~a--kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
|+|+++...-..+...|. -|+ +. +.-...-..++-|+.||+++.+
T Consensus 361 -----~~~~~~vvaevevGlGPLHTaFD---g~--G~aytslf~dsqv~kwn~~~a~ 407 (635)
T PRK02888 361 -----IKPRDAVVAEPELGLGPLHTAFD---GR--GNAYTTLFLDSQIVKWNIEAAI 407 (635)
T ss_pred -----CCccceEEEeeccCCCcceEEEC---CC--CCEEEeEeecceeEEEehHHHH
Confidence 455554332222333332 443 22 3455556678899999999844
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.84 E-value=0.0019 Score=62.76 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=57.2
Q ss_pred eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 33 FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 33 Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
.-.|+.+|... +++++.|..|.+|+.-++. +...|. |-|-|.+++++.||..+++||+ ..||+||.+-
T Consensus 134 Vg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 134 VGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred EEEEeecccchhhHhhccCCceEEEEeccCCc-eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 34677888554 8999999999999998886 544566 9999999999999999999996 6799999753
No 165
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.81 E-value=0.0076 Score=57.57 Aligned_cols=128 Identities=15% Similarity=0.258 Sum_probs=76.8
Q ss_pred EEEeCCCCcEEEEeccccccceecCCC--CCC---CeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCC--cccccccc
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPG--LGS---PIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGT--TKTGFNGR 116 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpg--lGd---PI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~--~~~GF~~~ 116 (244)
+|+.|.+.-|.|||..+++ .|...-+ +-| .-.++.|||||..|.|.-+.+|+++|+.-. |+-. ..+-|...
T Consensus 126 ~a~ssr~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~Rp-Gr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRP-GRDCPVYTTVTKGK 203 (406)
T ss_pred eeeccccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCC-CCCCcchhhhhccc
Confidence 8999999999999999875 2222222 223 335799999999999999999999999321 2110 00001101
Q ss_pred cCCCCCcceeeeeCccch------------------------hhcCCccceeeeeeeeecCCCCcceEEEEe-eCCeEEE
Q 044877 117 MGNKIAAPRLLKLTPLDS------------------------HLAGVNNKFHKAQFSWVTENGKQERHLVAT-VGKFSVI 171 (244)
Q Consensus 117 ~~~~kp~pr~L~L~Pe~~------------------------~~~G~~~~Ft~akFn~~tg~~~~E~~IvtS-tG~fvvv 171 (244)
+|. +-.--.+.++|-+. .+-|+.-.-|.-+|- ++ +++.-+++ .+..+..
T Consensus 204 ~gq-~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~---ed--Gn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 204 FGQ-KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC---ED--GNKLFSGARKDDKILC 277 (406)
T ss_pred ccc-cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEec---cC--cCeecccccCCCeEEE
Confidence 111 11122344555443 112334444444543 23 46777666 4789999
Q ss_pred Eechhhhc
Q 044877 172 WNFQQVKN 179 (244)
Q Consensus 172 Wn~~kV~~ 179 (244)
||++.+..
T Consensus 278 WDiR~~~~ 285 (406)
T KOG2919|consen 278 WDIRYSRD 285 (406)
T ss_pred Eeehhccc
Confidence 99998763
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.72 E-value=0.0034 Score=60.92 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=59.2
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEecc--------c-----c--ccceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccce
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSN--------S-----M--RQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYL 95 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~--------~-----~--r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L 95 (244)
.++|-++++|. +|+|+.+|+|-||-.. + . ...+-.+-++++.|..++.+||+.++++.| ++.+
T Consensus 68 VN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~ 147 (434)
T KOG1009|consen 68 VNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSV 147 (434)
T ss_pred eEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceE
Confidence 78999999999 8999999999999764 2 0 112335678999999999999999999999 5889
Q ss_pred EEEEeeec
Q 044877 96 ILICTLFT 103 (244)
Q Consensus 96 ~L~dt~~~ 103 (244)
+|||....
T Consensus 148 ~l~Dv~~G 155 (434)
T KOG1009|consen 148 RLWDVHAG 155 (434)
T ss_pred EEEEeccc
Confidence 99998653
No 167
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.68 E-value=0.0046 Score=62.36 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeee
Q 044877 68 FPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKA 146 (244)
Q Consensus 68 lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~a 146 (244)
|.||-.-|..++.+.||.||++.++++ |.+||. |+ + ||-|..-+||..|--++
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~------------~~----------~----KllhsI~TgHtaNIFsv 99 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDP------------FE----------Y----KLLHSISTGHTANIFSV 99 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecc------------hh----------c----ceeeeeecccccceeEE
Confidence 789999999999999999999999855 999995 22 1 22344678888777789
Q ss_pred eeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeee
Q 044877 147 QFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYC 196 (244)
Q Consensus 147 kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~ 196 (244)
||-..+ ..+.++.++.+++|.++|+...+.|-.+. .+.+-...|.|
T Consensus 100 KFvP~t---nnriv~sgAgDk~i~lfdl~~~~~~~~d~-~~~~~~~~~~c 145 (758)
T KOG1310|consen 100 KFVPYT---NNRIVLSGAGDKLIKLFDLDSSKEGGMDH-GMEETTRCWSC 145 (758)
T ss_pred eeeccC---CCeEEEeccCcceEEEEeccccccccccc-Cccchhhhhhh
Confidence 998554 36899999999999999999988776652 23334444444
No 168
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.018 Score=57.17 Aligned_cols=111 Identities=16% Similarity=0.215 Sum_probs=85.4
Q ss_pred eeEEEecC--CCcEEE--eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe---CCcceEEEEeeeccC
Q 044877 33 FQCFASTG--DGSIVV--GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT---TDTYLILICTLFTDK 105 (244)
Q Consensus 33 Ft~vats~--~G~Iav--GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT---~~~~L~L~dt~~~~~ 105 (244)
+-+++.+| .|-+|+ |+.|+.||+||..++.+.. ....|.-|.+|..|+..+=|++| +++-|.||+.
T Consensus 346 VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~--~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~----- 418 (484)
T KOG0305|consen 346 VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID--SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKY----- 418 (484)
T ss_pred eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec--ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEec-----
Confidence 56889999 444666 5789999999998775554 35689999999999999999887 3677999995
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV 177 (244)
|...++. .++||... --..+|.+ .+|.+++++.+.-+=.|++-.-
T Consensus 419 ----------------ps~~~~~------~l~gH~~R--Vl~la~SP---dg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 419 ----------------PSMKLVA------ELLGHTSR--VLYLALSP---DGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ----------------cccceee------eecCCcce--eEEEEECC---CCCEEEEecccCcEEeccccCC
Confidence 3444444 56777653 34667654 2799999999999999998654
No 169
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.018 Score=57.17 Aligned_cols=122 Identities=12% Similarity=0.157 Sum_probs=83.8
Q ss_pred CCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877 16 APVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T 93 (244)
Q Consensus 16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~ 93 (244)
.+|+..++.. .+..|+|..+++|. ||+|-.+|.|.|||....++..+..-++..-|-+++.. +.-+.+..+ .
T Consensus 207 ~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~ 280 (484)
T KOG0305|consen 207 GSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDG 280 (484)
T ss_pred CceEEeEecC----CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCC
Confidence 3455555553 77799999999998 99999999999999987777775433378888888888 444555565 5
Q ss_pred ceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 94 YLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
.|+.+|.+....-. + .+.||...--.-+++ . + +....++..++-+.+||
T Consensus 281 ~I~~~dvR~~~~~~-----------------~---------~~~~H~qeVCgLkws--~-d--~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 281 KILNHDVRISQHVV-----------------S---------TLQGHRQEVCGLKWS--P-D--GNQLASGGNDNVVFIWD 329 (484)
T ss_pred cEEEEEEecchhhh-----------------h---------hhhcccceeeeeEEC--C-C--CCeeccCCCccceEecc
Confidence 58888987532000 0 123343333333555 2 2 56777888889999999
Q ss_pred c
Q 044877 174 F 174 (244)
Q Consensus 174 ~ 174 (244)
.
T Consensus 330 ~ 330 (484)
T KOG0305|consen 330 G 330 (484)
T ss_pred C
Confidence 8
No 170
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.62 E-value=0.022 Score=54.28 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=46.0
Q ss_pred CceeEEEecCCCc-EEEeCCC---CcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEE
Q 044877 31 TNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILIC 99 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~d 99 (244)
....+.+.+|+|. ||..|.+ ..|++||..+++.. .+.+++ ...++++||||++|+.++ +....||.
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 4578899999998 8777654 36999999765421 222333 455789999999998765 35555554
No 171
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.56 E-value=0.012 Score=53.10 Aligned_cols=67 Identities=10% Similarity=0.057 Sum_probs=48.4
Q ss_pred eEEEecCCCc-E-EEeCCCCcEEEEeccccccce------ecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877 34 QCFASTGDGS-I-VVGSLDGKIRLYSSNSMRQAK------TAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL 101 (244)
Q Consensus 34 t~vats~~G~-I-avGS~dG~IRLyD~~~~r~aK------t~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~ 101 (244)
.+++++|+|. + ++...++.|++||.......+ ..+| .|....++.++|||+++.+++. +.|.+||..
T Consensus 129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 4577899987 5 555667999999985421111 0122 4666789999999999987774 789999975
No 172
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.0024 Score=67.32 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=67.0
Q ss_pred CCceecccccccCCCCceeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-c
Q 044877 16 APVLNWSQGHQFSRGTNFQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-T 93 (244)
Q Consensus 16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~ 93 (244)
|-+-+|...++-. --|||+|++..- +|++|+..|.|++|...++.. ..+...|+.+||.|-.|.||...|..+. +
T Consensus 1089 SRFr~w~~frd~~--~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDET--ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred hhcccchhhhccc--cceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeecccc
Confidence 6677888877654 559999999954 599999999999999987753 3356789999999999999999985543 3
Q ss_pred c--eEEEEee
Q 044877 94 Y--LILICTL 101 (244)
Q Consensus 94 ~--L~L~dt~ 101 (244)
. -.||+..
T Consensus 1166 ~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1166 SPLSALWDAS 1175 (1516)
T ss_pred CchHHHhccc
Confidence 3 6799963
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.015 Score=62.29 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=79.8
Q ss_pred ecccCCCceecccccccCCCCceeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCC-----CCCCCeeEEEeCCC
Q 044877 11 LANAGAPVLNWSQGHQFSRGTNFQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFP-----GLGSPIRYVDVTYD 83 (244)
Q Consensus 11 ~~~~~~~~~~~~~~k~Y~~~~~Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lp-----glGdPI~~vdvS~D 83 (244)
++..+++|-.|-+...- .++--+.+-+ .|+|++||.+|+|++||.++. -..+.+. ..|...|++.+..+
T Consensus 1240 ~a~~ds~v~~~R~h~~~---~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv~~~~yGs~lTal~VH~h 1315 (1387)
T KOG1517|consen 1240 MAPPDSLVCVYREHNDV---EPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS-SKETFLTIVAHWEYGSALTALTVHEH 1315 (1387)
T ss_pred cCCccccceeecccCCc---ccceeEEeecCCCcceeeeccCCeEEEEecccC-cccccceeeeccccCccceeeeeccC
Confidence 34455677777665433 2244455555 446999999999999999762 1122221 13778999999999
Q ss_pred CCEEEEeCCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhc
Q 044877 84 GRWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLA 137 (244)
Q Consensus 84 G~~lLaT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~ 137 (244)
..-|.+.+-..|.+|++.- +.=|.-+ =+.+.|+.+++.+-+|..+|-++.+.
T Consensus 1316 apiiAsGs~q~ikIy~~~G-~~l~~~k-~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1316 APIIASGSAQLIKIYSLSG-EQLNIIK-YNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred CCeeeecCcceEEEEecCh-hhhcccc-cCcccccCcCCCcceeeecchhHhhh
Confidence 9998877778899999752 1111111 02334567888888888888877554
No 174
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.023 Score=60.91 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=79.0
Q ss_pred cCCCCceeEEEecC-CCc-EEEeCCCCcEEEEecccccc--ceecCCCCCCC--eeEEEeCCCCCE-EEEeCC-cceEEE
Q 044877 27 FSRGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQ--AKTAFPGLGSP--IRYVDVTYDGRW-ILGTTD-TYLILI 98 (244)
Q Consensus 27 Y~~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~--aKt~lpglGdP--I~~vdvS~DG~~-lLaT~~-~~L~L~ 98 (244)
|.+.+-.|++..+- .|. ||+|-.||.||+||.+.-.. .-.....+.++ |.++.+-+.|-- |++.|. .-|.+|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 45666677776666 556 99999999999999964221 11122356666 999999987655 778875 669999
Q ss_pred EeeeccCCCCcccccccccCCCCCcceeeeeCccchh-hcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877 99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSH-LAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177 (244)
Q Consensus 99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~-~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV 177 (244)
|.+-. +.. --+.+ ..+ .+|..+ .|-+.+ ..+.+|.+.++.++.+|++..=
T Consensus 1285 DlR~~---------~~e---------~~~~i---v~~~~yGs~l---Tal~VH-----~hapiiAsGs~q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1285 DLRMS---------SKE---------TFLTI---VAHWEYGSAL---TALTVH-----EHAPIIASGSAQLIKIYSLSGE 1335 (1387)
T ss_pred ecccC---------ccc---------cccee---eeccccCccc---eeeeec-----cCCCeeeecCcceEEEEecChh
Confidence 97631 110 00110 001 234333 233332 2567777777799999998765
Q ss_pred hcCCc
Q 044877 178 KNGSH 182 (244)
Q Consensus 178 ~~g~~ 182 (244)
+.+..
T Consensus 1336 ~l~~~ 1340 (1387)
T KOG1517|consen 1336 QLNII 1340 (1387)
T ss_pred hhccc
Confidence 54443
No 175
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.42 E-value=0.032 Score=55.90 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=91.8
Q ss_pred ccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877 24 GHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF 102 (244)
Q Consensus 24 ~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~ 102 (244)
.+++.+ .-.+||++.++|++++|..+|.|-+|+..+-+..|+.. .|..-|-+++.-.||+.|- .- +..|.+||-.+
T Consensus 241 fek~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 241 FEKREK-KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY 317 (626)
T ss_pred cccccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence 455655 45799999999999999999999999998777777766 7888999999999999774 55 46699999443
Q ss_pred ccCCCCcccccccccCCCCCcceeeee-CccchhhcCC----------ccceeeeeee-----ee-cCCCCcceEEEEee
Q 044877 103 TDKNGTTKTGFNGRMGNKIAAPRLLKL-TPLDSHLAGV----------NNKFHKAQFS-----WV-TENGKQERHLVATV 165 (244)
Q Consensus 103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L-~Pe~~~~~G~----------~~~Ft~akFn-----~~-tg~~~~E~~IvtSt 165 (244)
+.-+ +.-+++.+..+|-+.- +|+ .+.|. ...|+.--|- |. .--...+..+.++-
T Consensus 318 ~k~r-------~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 318 RKLR-------ETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred cccc-------cccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence 2100 0113344334444332 333 23332 2244433221 11 00123678889999
Q ss_pred CCeEEEEec
Q 044877 166 GKFSVIWNF 174 (244)
Q Consensus 166 G~fvvvWn~ 174 (244)
++.|-+||=
T Consensus 389 dk~v~lW~~ 397 (626)
T KOG2106|consen 389 DKHVRLWND 397 (626)
T ss_pred cceEEEccC
Confidence 999999993
No 176
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.38 E-value=0.0077 Score=58.10 Aligned_cols=112 Identities=10% Similarity=0.106 Sum_probs=82.9
Q ss_pred eEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCccc
Q 044877 34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKT 111 (244)
Q Consensus 34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~ 111 (244)
..++.+|++. .++|++|-.+-+||.+.....-....+|+..|.+||+||-|+=+++.+ +.+|||+.+.-. ..
T Consensus 233 N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~--~S---- 306 (433)
T KOG0268|consen 233 NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG--HS---- 306 (433)
T ss_pred cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC--cc----
Confidence 4788899887 899999999999999765545445568999999999999999999887 799999997421 10
Q ss_pred ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
-|+.++.--.+...-+|+. + ...+|++|-+..|=.|--..
T Consensus 307 --------------------RdiYhtkRMq~V~~Vk~S~---D--skyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 307 --------------------RDIYHTKRMQHVFCVKYSM---D--SKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred --------------------hhhhhHhhhheeeEEEEec---c--ccEEEecCCCcceeeeecch
Confidence 0111111112334667772 2 57899999999999997654
No 177
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=0.011 Score=58.25 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=90.8
Q ss_pred ccCCCCceeEEEecC-CC-cEE-EeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 26 QFSRGTNFQCFASTG-DG-SIV-VGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~-~G-~Ia-vGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
+|+.+..+...+++. ++ +++ +-...-.|-+|-.....+-. .-+-+-.||..|.-+|+|.||++.+ ...|-||...
T Consensus 33 ~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels 111 (476)
T KOG0646|consen 33 QYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELS 111 (476)
T ss_pred EecCcccccchhhhhhchhheeeecccCccccccccCchhhhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEec
Confidence 466665666666655 22 544 44456678888874321111 2334556999999999999999997 5779999973
Q ss_pred eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCC
Q 044877 102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGS 181 (244)
Q Consensus 102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~ 181 (244)
..++|. .+.+|-.+-|+-+|+ +.++..|.+|-+.-|++|.+-.+....
T Consensus 112 ---------------------sG~LL~------v~~aHYQ~ITcL~fs-----~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 112 ---------------------SGILLN------VLSAHYQSITCLKFS-----DDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ---------------------cccHHH------HHHhhccceeEEEEe-----CCCcEEEecCCCccEEEEEEEeecccc
Confidence 235666 566777888999997 348999999999999999999998776
Q ss_pred cc
Q 044877 182 HE 183 (244)
Q Consensus 182 ~~ 183 (244)
.+
T Consensus 160 ~~ 161 (476)
T KOG0646|consen 160 ND 161 (476)
T ss_pred cC
Confidence 65
No 178
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.32 E-value=0.007 Score=60.57 Aligned_cols=107 Identities=17% Similarity=0.304 Sum_probs=77.8
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcc
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTK 110 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~ 110 (244)
-+|+..+.+|+ |-+|+.|+.+|.||.+.+|+... -.+..-|-++--.|.|.||+.... +++-+..+.
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~s--------- 622 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS--------- 622 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecC---------
Confidence 58999999998 99999999999999987765442 257889999999999999998886 558777763
Q ss_pred cccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 111 TGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 111 ~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
.|.+.||+. |.-..-.-||..+ +.-++.|--++++=.|..
T Consensus 623 ------------kp~kyqlhl-------heScVLSlKFa~c-----GkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 623 ------------KPEKYQLHL-------HESCVLSLKFAYC-----GKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ------------Cccceeecc-------cccEEEEEEeccc-----CceeeecCchhhhhhccC
Confidence 233444332 2222224566643 356677777778777753
No 179
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=0.019 Score=56.76 Aligned_cols=73 Identities=8% Similarity=0.097 Sum_probs=58.9
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEE
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILIC 99 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~d 99 (244)
++-.-..+.++++.+|. |++.+.+|.|-+||.....+..++.+.=+--=++++.|++|.|+++.++.. +-|||
T Consensus 341 ~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 341 FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence 34455678889999998 888899999999999877777766664445668999999999998888865 67777
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=96.25 E-value=0.034 Score=52.92 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=45.5
Q ss_pred ceeEEEecCCCc-EEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877 32 NFQCFASTGDGS-IVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT 100 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt 100 (244)
..++.+.+|+|. |+..| .+|..++|+........+.+...+ ....+||||++|+.++...|.+||.
T Consensus 293 ~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~---~~~~~SpDG~~ia~~~~~~i~~~Dl 360 (429)
T PRK01742 293 NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG---YSAQISADGKTLVMINGDNVVKQDL 360 (429)
T ss_pred CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC---CCccCCCCCCEEEEEcCCCEEEEEC
Confidence 356889999998 66544 689999998632111222333222 4578999999998887777777885
No 181
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.014 Score=56.49 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=56.8
Q ss_pred eeEEEecCC--C-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 33 FQCFASTGD--G-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~--G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
++.+.+-+. - .+|+++.-|.+|+||.+.+|+--..++-.-.||+++..+|+|++|+++. +.-|-.+|.+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 455555553 2 3999999999999999988876656787889999999999999999664 6779999975
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.23 E-value=0.034 Score=53.54 Aligned_cols=103 Identities=12% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cc-eEEEEeeeccCCCCcccccccccCCCCCccee
Q 044877 49 LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRL 126 (244)
Q Consensus 49 ~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~ 126 (244)
..|+|.|||..+.+ .-+.++.|..||-.|+|++||..|+.+++ .+ ||++.+. +|..-|+=
T Consensus 151 t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~------~G~kl~eF----------- 212 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP------EGQKLYEF----------- 212 (391)
T ss_pred CCceEEEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC------CccEeeee-----------
Confidence 36999999998876 44468999999999999999999977775 44 9999872 22222331
Q ss_pred eeeCccchhhcC-CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCcc
Q 044877 127 LKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHE 183 (244)
Q Consensus 127 L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~ 183 (244)
.-| ...+-..--|+ . + .....++|.-.-|.+|-++++.....+
T Consensus 213 ---------RRG~~~~~IySL~Fs--~-d--s~~L~~sS~TeTVHiFKL~~~~~~~~~ 256 (391)
T KOG2110|consen 213 ---------RRGTYPVSIYSLSFS--P-D--SQFLAASSNTETVHIFKLEKVSNNPPE 256 (391)
T ss_pred ---------eCCceeeEEEEEEEC--C-C--CCeEEEecCCCeEEEEEecccccCCCC
Confidence 112 12233344555 2 2 457778888889999999999855443
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.06 Score=50.10 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=82.1
Q ss_pred CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEe-CCCCCEEEEeC-CcceEEEEeeeccCCC
Q 044877 31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDV-TYDGRWILGTT-DTYLILICTLFTDKNG 107 (244)
Q Consensus 31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdv-S~DG~~lLaT~-~~~L~L~dt~~~~~~~ 107 (244)
..+.++-..| ++.|..+.-||.|..||..+++..+ .+.||-|-|-+|.. +.+|+-+ +.. +.++|+||++.. +
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-~~rGHtDYvH~vv~R~~~~qil-sG~EDGtvRvWd~kt~--k- 189 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-EYRGHTDYVHSVVGRNANGQIL-SGAEDGTVRVWDTKTQ--K- 189 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-EEcCCcceeeeeeecccCccee-ecCCCccEEEEecccc--c-
Confidence 3478889997 6678888899999999999998666 57999999999988 7787755 555 688999998631 1
Q ss_pred CcccccccccC-CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 108 TTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 108 ~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
-.+-++ -+ .|-+|+ |.-- .|..-....|.+.|.-.||-+-+|+++.
T Consensus 190 -----~v~~ie~yk--~~~~lR--p~~g--------------~wigala~~edWlvCGgGp~lslwhLrs 236 (325)
T KOG0649|consen 190 -----HVSMIEPYK--NPNLLR--PDWG--------------KWIGALAVNEDWLVCGGGPKLSLWHLRS 236 (325)
T ss_pred -----eeEEecccc--ChhhcC--cccC--------------ceeEEEeccCceEEecCCCceeEEeccC
Confidence 111111 11 122333 2111 1111112369999999999999999875
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=96.20 E-value=0.014 Score=60.01 Aligned_cols=71 Identities=11% Similarity=0.220 Sum_probs=59.0
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
....|+.+++... |.....-|.+.+||..+++-+- .|-+++|-|.+.+.|-||+.|...|+ .-|+++|-+-
T Consensus 129 ~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~-el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 129 VIVECLRFHPTADGILASGAHGSVYITDISTQKTAV-ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eEEEEeecccCcCceEEeccCceEEEEEcccCceee-cccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 4578999999544 7777778999999998876554 57899999999999999999988886 6699999753
No 185
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.19 E-value=0.021 Score=55.28 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=58.1
Q ss_pred cccccCCCCceeEEEecCCCc-EEEeCC-CCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEe-CCcceEEE
Q 044877 23 QGHQFSRGTNFQCFASTGDGS-IVVGSL-DGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGT-TDTYLILI 98 (244)
Q Consensus 23 ~~k~Y~~~~~Ft~vats~~G~-IavGS~-dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT-~~~~L~L~ 98 (244)
|--+|.-++++|+++..++|. ++++|. |-.|++||.-++ +++-|+..| .-++=+-.||||.|++|+ |+..-+||
T Consensus 188 qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg--~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw 265 (445)
T KOG2139|consen 188 QVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG--QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLW 265 (445)
T ss_pred hheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCC--CcccccccCCCceeeEEEcCCCCEEEEecccceeeee
Confidence 445677889999999999998 677775 456999999776 444555444 357788999999999966 58889999
No 186
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.19 E-value=0.015 Score=55.76 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=56.3
Q ss_pred eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEe
Q 044877 33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICT 100 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt 100 (244)
.|++.++-+..|++||.|-.|++||++++|-+--. -....||.-|.+|.-+.-|..--++. ++|+|.
T Consensus 360 VTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplAT-IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 360 VTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred eeEEEEecCCceeecCCCceEEEeeeccccCccee-eecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 78899999888999999999999999888754322 35789999999999888776666766 999996
No 187
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.15 E-value=0.017 Score=59.34 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=84.5
Q ss_pred EEEecC-CCc--EEEeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCC--EEEEeC--CcceEEEEeeeccCC
Q 044877 35 CFASTG-DGS--IVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGR--WILGTT--DTYLILICTLFTDKN 106 (244)
Q Consensus 35 ~vats~-~G~--IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~--~lLaT~--~~~L~L~dt~~~~~~ 106 (244)
|++..+ .+. +|.|+.+-.|.||.....+.+ ...|.||+|=|.+|++..-|. .+||++ +.|||||...+.+..
T Consensus 150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~ 229 (764)
T KOG1063|consen 150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDE 229 (764)
T ss_pred HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCc
Confidence 455555 555 799999999999988643322 335789999999999996554 677776 488999999987622
Q ss_pred CCcccccccccCCCCCccee-----eeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877 107 GTTKTGFNGRMGNKIAAPRL-----LKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177 (244)
Q Consensus 107 ~~~~~GF~~~~~~~kp~pr~-----L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV 177 (244)
.+...-+......+.|.--. +++.-| .-+|||.-=-..- .|.+ ..+..+.+|.++-.|+|-=.+.
T Consensus 230 ~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e-all~GHeDWV~sv--~W~p---~~~~LLSASaDksmiiW~pd~~ 299 (764)
T KOG1063|consen 230 DSNEREDSLTTLSNLPVFMILEEIQYRISFE-ALLMGHEDWVYSV--WWHP---EGLDLLSASADKSMIIWKPDEN 299 (764)
T ss_pred cccccccccccccCCceeeeeeeEEEEEehh-hhhcCcccceEEE--EEcc---chhhheecccCcceEEEecCCc
Confidence 22111111111112333222 222222 2356876322222 3432 2588999999999999975544
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=96.15 E-value=0.017 Score=57.97 Aligned_cols=123 Identities=15% Similarity=0.270 Sum_probs=79.1
Q ss_pred eEEEecC-CCcEEEeCCCCcEEEEeccc--------cccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877 34 QCFASTG-DGSIVVGSLDGKIRLYSSNS--------MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT 103 (244)
Q Consensus 34 t~vats~-~G~IavGS~dG~IRLyD~~~--------~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~ 103 (244)
++.++++ .+.|+++|.||.|.||.+.. .+..- .|.+|-.||.+|+++++|+.+.+.. +.+|+.|+.- .
T Consensus 298 r~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~-tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p-~ 375 (577)
T KOG0642|consen 298 RALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL-TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLP-P 375 (577)
T ss_pred hhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeE-EEecccCceEEEEecCCceEEEeeccCceeeeeccC-C
Confidence 3445555 56699999999999999821 11222 4678999999999999999999776 7999999864 2
Q ss_pred cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877 104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~ 179 (244)
+.+- -.+|. |.-|. -++.|+.-.-----|+ ....+..+.|.+.-|..|+-..+-.
T Consensus 376 n~dp--~ds~d---------p~vl~-----~~l~Ghtdavw~l~~s-----~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 376 NQDP--DDSYD---------PSVLS-----GTLLGHTDAVWLLALS-----STKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CCCc--ccccC---------cchhc-----cceeccccceeeeeec-----ccccceeeecCCceEEeeccCCcCc
Confidence 2111 01111 22222 0355553211001122 2256688889999999998776654
No 189
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.14 E-value=0.011 Score=33.27 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=24.0
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEe
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYS 57 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD 57 (244)
...+.+++.++++. +++|+.||.|++||
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34588999998766 99999999999997
No 190
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.12 E-value=0.032 Score=45.42 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=48.7
Q ss_pred eeEEEecC---CCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877 33 FQCFASTG---DGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT 100 (244)
Q Consensus 33 Ft~vats~---~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt 100 (244)
.+|+++.. +|+ +++||.|.+||+|+.-. ....+. -.+.|+++.....++|.-+....+|-+++-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 45565544 554 99999999999999842 222223 678999999999999887877888988874
No 191
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=96.12 E-value=0.019 Score=58.49 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=54.3
Q ss_pred EEEecC-CCcEEEeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeec
Q 044877 35 CFASTG-DGSIVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFT 103 (244)
Q Consensus 35 ~vats~-~G~IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~ 103 (244)
-++--+ +-.|++.|-|-.||+||..+.+.. +.++-||--.+.++++.++..-+.||- +..++|||++..
T Consensus 105 Dl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n 177 (720)
T KOG0321|consen 105 DLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCN 177 (720)
T ss_pred eeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEecc
Confidence 344445 223999999999999999765433 335668888999999999999999986 577999999863
No 192
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.12 E-value=0.024 Score=54.14 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=53.0
Q ss_pred eeEEEecCCCc-EEEeCCC----------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCC-EEEEeCC--cceEEE
Q 044877 33 FQCFASTGDGS-IVVGSLD----------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR-WILGTTD--TYLILI 98 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~d----------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~-~lLaT~~--~~L~L~ 98 (244)
.+-+|.+++|. +++.... +.|-++|..+.+..+. ++ +|.++.+|.+||||+ +|.+|+. +.|.++
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-IE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE-Ee-CCCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 34599999876 7774322 4799999988876663 55 799999999999999 8888884 669999
Q ss_pred Eee
Q 044877 99 CTL 101 (244)
Q Consensus 99 dt~ 101 (244)
|+.
T Consensus 328 D~~ 330 (352)
T TIGR02658 328 DAE 330 (352)
T ss_pred ECc
Confidence 973
No 193
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.08 E-value=0.056 Score=51.69 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=46.0
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL 88 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL 88 (244)
-+.+|++.|++|+ +.++|.|..|.|||.+.+...+. -.+..||.+..+.|-.+-..
T Consensus 66 ~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r--irf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 66 RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR--IRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE--EEccCccceeeeccccCCeE
Confidence 3689999999999 99999999999999987765552 25889999999996554443
No 194
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.06 E-value=0.1 Score=49.63 Aligned_cols=68 Identities=9% Similarity=-0.021 Sum_probs=49.3
Q ss_pred CceeEEEecCCCc-EEEeCC---CCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cc--eEEEEe
Q 044877 31 TNFQCFASTGDGS-IVVGSL---DGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TY--LILICT 100 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~---dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~--L~L~dt 100 (244)
....+.+.+|+|. ||..+. +..|.+||..+++ .+ .+..+..++.+.++||||+.|+.++. .. |.+||.
T Consensus 202 ~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 202 SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-RE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-EE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 3577899999998 777654 4689999997764 33 34455668889999999999875542 22 666664
No 195
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.05 E-value=0.015 Score=55.94 Aligned_cols=119 Identities=12% Similarity=0.130 Sum_probs=84.0
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc-----cceecCCCCCCCeeEEEeCC-CCCEEEEeCC-cceEEE
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-----QAKTAFPGLGSPIRYVDVTY-DGRWILGTTD-TYLILI 98 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-----~aKt~lpglGdPI~~vdvS~-DG~~lLaT~~-~~L~L~ 98 (244)
|-++-++-+..+...+. +..|...|.|-.+|++... +|.- --|+..|+++.+-. ++++|+|..+ ..|.||
T Consensus 249 f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r--lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 249 FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR--LYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE--EEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 35666666777777666 7889999999999998653 3321 24889999998887 9999999987 559999
Q ss_pred EeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeC-CeEEEEech
Q 044877 99 CTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVG-KFSVIWNFQ 175 (244)
Q Consensus 99 dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG-~fvvvWn~~ 175 (244)
|.+.. ++ .+-++ .|+||.+.-++.-|. .+..|.+|++-.+ =|.=+|.++
T Consensus 327 D~R~~-----------K~-------~~~V~------qYeGHvN~~a~l~~~----v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 327 DLRAT-----------KC-------KKSVM------QYEGHVNLSAYLPAH----VKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred eehhh-----------hc-------cccee------eeecccccccccccc----cccccceEEEccCeeEEEEEecc
Confidence 98742 10 11244 789988766666554 2335666666332 366789987
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.04 E-value=0.036 Score=55.15 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=93.4
Q ss_pred ccceeeecc-cCCCce-ecccccccCCCCceeEEEecCCC--cEEEeCCCCcEEEEeccccccc------eecCCCC---
Q 044877 5 NGIVQNLAN-AGAPVL-NWSQGHQFSRGTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQA------KTAFPGL--- 71 (244)
Q Consensus 5 ~~~~~~~~~-~~~~~~-~~~~~k~Y~~~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~a------Kt~lpgl--- 71 (244)
.|+|+++.- ++.|.. -.+..+.........++|.+|.. ..|+|..|--.|+||.+....+ +.++|.+
T Consensus 254 D~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~ 333 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE 333 (559)
T ss_pred ccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence 467776643 333322 22444444445678899999943 4999999999999999754322 5566643
Q ss_pred --CCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccC-CCCCcceeeeeCccchhhcCCccceee--
Q 044877 72 --GSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHK-- 145 (244)
Q Consensus 72 --GdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~-- 145 (244)
---|+++..|+||.=|||.. +--|-|+.- .|+ ...|-|--.+=...+.-|.||.++=|-
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~---------------~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg 398 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNK---------------SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG 398 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEecc---------------ccccCCCCCCCcchhhccchhhcccccccccce
Confidence 23589999999999999886 455666532 222 111221111100011137787554332
Q ss_pred eeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 146 AQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 146 akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
+.|= | ...|.++.+|--.-+++|+=+
T Consensus 399 VNFf---G-PrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 399 VNFF---G-PRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred eeec---c-CccceEEecCccceEEEEecc
Confidence 2442 2 347999999999999999854
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.01 E-value=0.028 Score=55.70 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=90.8
Q ss_pred cCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877 27 FSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT 103 (244)
Q Consensus 27 Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~ 103 (244)
+...-....++-+| ++=|=+|...|.|-||.-.... -+| +--+-.||.+|+|-++|+|.+.|- +..+.+||.+-
T Consensus 248 ~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK--iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~- 324 (545)
T KOG1272|consen 248 RTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK--ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN- 324 (545)
T ss_pred HccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH--HHhcCCCcceEEECCCCcEEeecccccceeEeeecc-
Confidence 34455566777778 4448999999999999985432 233 234778999999999999997665 47799999752
Q ss_pred cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCcc
Q 044877 104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHE 183 (244)
Q Consensus 104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~ 183 (244)
|.. |... +. ++.-..--|+ +.-.++.|.|++|-+|- ..++|...
T Consensus 325 ---------~~q------l~t~----------~t--p~~a~~ls~S-------qkglLA~~~G~~v~iw~--d~~~~s~~ 368 (545)
T KOG1272|consen 325 ---------FYQ------LHTY----------RT--PHPASNLSLS-------QKGLLALSYGDHVQIWK--DALKGSGH 368 (545)
T ss_pred ---------ccc------ccee----------ec--CCCccccccc-------cccceeeecCCeeeeeh--hhhcCCCC
Confidence 331 1111 11 1100111333 56689999999999993 45554432
Q ss_pred ccccccCCceeeeeEEEecCcccccccee
Q 044877 184 CYQNQEGLKSCYCYKIVLKDDSIVDSRFM 212 (244)
Q Consensus 184 ~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~ 212 (244)
+ -.||---+....|.+.+|.
T Consensus 369 ~---------~~pYm~H~~~~~V~~l~Fc 388 (545)
T KOG1272|consen 369 G---------ETPYMNHRCGGPVEDLRFC 388 (545)
T ss_pred C---------CcchhhhccCcccccceec
Confidence 2 2477777777777777665
No 198
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=0.029 Score=57.32 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=92.6
Q ss_pred CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeecc
Q 044877 28 SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTD 104 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~ 104 (244)
.......++|.++.+. +++|+.||.+..++..... .-+..|+.-...|.+|++.|+|..|++.|-++ |++||.+-.
T Consensus 108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~- 186 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG- 186 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC-
Confidence 4566789999999887 9999999977777775332 34667887889999999999999999999877 999998632
Q ss_pred CCCCcccccccccC---CC--CCc--ceeeeeCccchhhcC---Ccccee--------------ee-eeeeecCCCCcce
Q 044877 105 KNGTTKTGFNGRMG---NK--IAA--PRLLKLTPLDSHLAG---VNNKFH--------------KA-QFSWVTENGKQER 159 (244)
Q Consensus 105 ~~~~~~~GF~~~~~---~~--kp~--pr~L~L~Pe~~~~~G---~~~~Ft--------------~a-kFn~~tg~~~~E~ 159 (244)
..-.-..|+ -+ +|. =-.+-|++-.+. .| +.+.|= .| -+... -.+++.+
T Consensus 187 -----~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~-sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La-v~~~~d~ 259 (691)
T KOG2048|consen 187 -----QTLHIITMQLDRLSKREPTIVWSVLFLRDSTIA-SGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA-VADNEDR 259 (691)
T ss_pred -----ceEEEeeecccccccCCceEEEEEEEeecCcEE-EecCCceEEEEcccCcchhhhhhhhhcceeEEE-EcCCCCe
Confidence 222322222 11 222 113345554331 11 112221 11 11111 1244678
Q ss_pred EEEEeeCCeEEEEechhhhc
Q 044877 160 HLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 160 ~IvtStG~fvvvWn~~kV~~ 179 (244)
+.++..++-++-+.....++
T Consensus 260 vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEccCCCceEEEEecCCcc
Confidence 88888888888888877754
No 199
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=95.93 E-value=0.067 Score=50.67 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=57.0
Q ss_pred CCceeEEEecCCCc--EEEeCCCCcEEEEeccccc---------------------------------------------
Q 044877 30 GTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMR--------------------------------------------- 62 (244)
Q Consensus 30 ~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r--------------------------------------------- 62 (244)
...+--||+...|. .|+-+.||.+|+||++...
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 34455678888554 8999999999999997422
Q ss_pred --cceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccc-eEEEEeee
Q 044877 63 --QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTY-LILICTLF 102 (244)
Q Consensus 63 --~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~-L~L~dt~~ 102 (244)
..-..|.+|+.+|.+|+.-|-...-|||| +++ .+|||...
T Consensus 276 P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 12224778999999999999999999999 555 99999753
No 200
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.88 E-value=0.012 Score=56.57 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=76.4
Q ss_pred eEEEecCCCc--EEEeCCCCcEEEEeccc----ccccee-----------cCCCCCCCeeEEEeCCCCCEEEEeCCcceE
Q 044877 34 QCFASTGDGS--IVVGSLDGKIRLYSSNS----MRQAKT-----------AFPGLGSPIRYVDVTYDGRWILGTTDTYLI 96 (244)
Q Consensus 34 t~vats~~G~--IavGS~dG~IRLyD~~~----~r~aKt-----------~lpglGdPI~~vdvS~DG~~lLaT~~~~L~ 96 (244)
|+.-++|.-+ ++=.|.+|.|||-|.+. .+-.|. ++.+.=..|..|-||++|+|+|+-.-.++.
T Consensus 217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk 296 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVK 296 (433)
T ss_pred hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeE
Confidence 4555667544 78889999999999962 112231 122222457888999999999988778899
Q ss_pred EEEeeeccCCCCcccccccccCCCCCc---ceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 97 LICTLFTDKNGTTKTGFNGRMGNKIAA---PRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 97 L~dt~~~~~~~~~~~GF~~~~~~~kp~---pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
|||.... .+|. |-+-.|+++=-.++-.+--|.+=.++|. |....+..+|--++.-+++
T Consensus 297 ~wD~nme----------------~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s---g~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 297 LWDLNME----------------AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS---GNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEecccc----------------CCcceEEeehHhHHHHHHHHhhccchhheeEEEEc---CCcceEecccccceEEEec
Confidence 9997431 1122 1111222221123334455666667774 3467888888888888888
No 201
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.87 E-value=0.04 Score=55.24 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=82.1
Q ss_pred EEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCCCccc
Q 044877 36 FASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNGTTKT 111 (244)
Q Consensus 36 vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~~~ 111 (244)
+..++.-. +.++|.+|.|.|||..+++---.++..|..|-.+|+|||-..-|+++- +..|.+||+.-+
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~-------- 241 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ-------- 241 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc--------
Confidence 34455322 789999999999999887655666778999999999999888888774 677999997521
Q ss_pred ccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcC
Q 044877 112 GFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNG 180 (244)
Q Consensus 112 GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g 180 (244)
....+|. -.+-|+.--|. ..+-...+++.-.-+|.+|++..++-
T Consensus 242 ----------~s~~~l~----------y~~Plstvaf~-----~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 242 ----------ASTDRLT----------YSHPLSTVAFS-----ECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ----------cccceee----------ecCCcceeeec-----CCceEEEeecCCceEEEEecccCCCC
Confidence 1223333 13456666776 23678888999999999999876543
No 202
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.79 E-value=0.16 Score=48.44 Aligned_cols=66 Identities=20% Similarity=0.109 Sum_probs=45.2
Q ss_pred eeEEEecCCCc-EE-EeCCCCcEEEEec--cccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877 33 FQCFASTGDGS-IV-VGSLDGKIRLYSS--NSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT 100 (244)
Q Consensus 33 Ft~vats~~G~-Ia-vGS~dG~IRLyD~--~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt 100 (244)
..+.+.+|+|. || +.+.+|..+||.. .+.. .+ .|-.....+++.++||||++|+.+++ ....||..
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 35789999997 65 5788998777764 3332 33 23333445678899999999997764 45666664
No 203
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=95.70 E-value=0.02 Score=53.48 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCCCc-eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877 28 SRGTN-FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT 100 (244)
Q Consensus 28 ~~~~~-Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt 100 (244)
..+++ .+-+..-+||. +|+++=||.||+|.=++++ .--.|.-|.+.|.+|++|||...+.++++ ..|-||+.
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 44555 77888889999 7999999999999998885 44467788999999999999888888885 67999984
No 204
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.26 Score=46.98 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=60.1
Q ss_pred CCceeccccccc-CCCCceeEEEecC--CCc-EEEeCCCCcEEEEeccccc-----------------------------
Q 044877 16 APVLNWSQGHQF-SRGTNFQCFASTG--DGS-IVVGSLDGKIRLYSSNSMR----------------------------- 62 (244)
Q Consensus 16 ~~~~~~~~~k~Y-~~~~~Ft~vats~--~G~-IavGS~dG~IRLyD~~~~r----------------------------- 62 (244)
++-.+|..-..- -++...+-|.+.| -|. +|+.+.||.+|+|+....-
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 334455444333 3455678888888 565 8999999999999985210
Q ss_pred -------------------------------------cceecCCCCCCCeeEEEeCCC-CC--EEEEe-CCcceEEEEee
Q 044877 63 -------------------------------------QAKTAFPGLGSPIRYVDVTYD-GR--WILGT-TDTYLILICTL 101 (244)
Q Consensus 63 -------------------------------------~aKt~lpglGdPI~~vdvS~D-G~--~lLaT-~~~~L~L~dt~ 101 (244)
..-..||+++|||+.|++.|+ |+ ++||+ |.+.|+||...
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~ 256 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKVK 256 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEEe
Confidence 111247899999999999987 33 35544 67779999976
Q ss_pred e
Q 044877 102 F 102 (244)
Q Consensus 102 ~ 102 (244)
.
T Consensus 257 ~ 257 (361)
T KOG2445|consen 257 V 257 (361)
T ss_pred e
Confidence 4
No 205
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=95.63 E-value=0.043 Score=51.34 Aligned_cols=92 Identities=12% Similarity=0.028 Sum_probs=63.8
Q ss_pred eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCC-CCCCeeEEEeCCCCCEEEEeCCcceEEEEeeecc-----CC
Q 044877 33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPG-LGSPIRYVDVTYDGRWILGTTDTYLILICTLFTD-----KN 106 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpg-lGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~-----~~ 106 (244)
.+|+.+.+++++..|+..|.+.+|+..++| .++++.+ .+.+|+++...|+++.+.=.=+-.|.||+.-... .=
T Consensus 17 v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r-~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si 95 (323)
T KOG0322|consen 17 VTSVLFQANERLMSGLSVGIVKMWVLQTER-DLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSI 95 (323)
T ss_pred heehhhccchhhhcccccceEEEEEeecCc-cchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeee
Confidence 578888899999999999999999998875 7888885 5689999999998664322223457777653200 00
Q ss_pred CCcccccccccCCCCCcce
Q 044877 107 GTTKTGFNGRMGNKIAAPR 125 (244)
Q Consensus 107 ~~~~~GF~~~~~~~kp~pr 125 (244)
--+.+||.++-=-.+|+++
T Consensus 96 ~~nslgFCrfSl~~~~k~~ 114 (323)
T KOG0322|consen 96 VVNSLGFCRFSLVKKPKNS 114 (323)
T ss_pred eccccccccceeccCCCcc
Confidence 1246788864324445554
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=95.58 E-value=0.19 Score=47.93 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=47.7
Q ss_pred CCceeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC-cceEEEEe
Q 044877 30 GTNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD-TYLILICT 100 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~~L~L~dt 100 (244)
+....+.+.+|+|. ||..+.+ ..|.+||..+++..+ +..+...+.+..+||||++|+.+ +. ....||..
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 44578899999997 7777643 359999997664322 33344456789999999999854 43 44555543
No 207
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.52 E-value=0.045 Score=54.91 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=58.2
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC-----CCEEEEeCC--cceEEEEeee
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD-----GRWILGTTD--TYLILICTLF 102 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D-----G~~lLaT~~--~~L~L~dt~~ 102 (244)
...++++.+++|. +++|| +.|++||..+.+... .++||+.||..+.|+.+ |+|+|++.. .+|-.|-..-
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~-~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI-TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEccCceEEE-EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 3467899999987 56665 689999999887666 58999999999999999 999998874 6688887654
Q ss_pred ccC
Q 044877 103 TDK 105 (244)
Q Consensus 103 ~~~ 105 (244)
.++
T Consensus 222 ~~k 224 (541)
T KOG4547|consen 222 EDK 224 (541)
T ss_pred ccc
Confidence 333
No 208
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.46 E-value=0.054 Score=53.22 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=61.3
Q ss_pred cccCCCCceeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877 25 HQFSRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICT 100 (244)
Q Consensus 25 k~Y~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt 100 (244)
+.++-.-+..-++.++.-. +.+|+.||.+|-||.|..-+.--.+..|.+||.+|++++.-..+|+|. +.++.||+.
T Consensus 324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 3444455667788888543 899999999999999865333334678999999999999999999885 588999997
Q ss_pred ee
Q 044877 101 LF 102 (244)
Q Consensus 101 ~~ 102 (244)
..
T Consensus 404 ~~ 405 (463)
T KOG0270|consen 404 DV 405 (463)
T ss_pred cC
Confidence 54
No 209
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.39 E-value=0.32 Score=45.80 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=47.9
Q ss_pred CCCceeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT 100 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt 100 (244)
.+.+..+.+.+|+|. ||..+.+ ..|.+||..+++ .+ .+......+....+||||++|+.+. . . .|.+||.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~ 274 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-RE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDL 274 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEEC
Confidence 345578889999997 7665543 358889987664 23 2344445566789999999998543 2 2 3777775
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.34 E-value=0.34 Score=46.37 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=46.4
Q ss_pred CceeEEEecCCCc-EEEeC---CCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877 31 TNFQCFASTGDGS-IVVGS---LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT 100 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS---~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt 100 (244)
....+.+.+|+|. ||..+ .+..|.+||..+++ .+ .+-.+...+.++.+||||++|+.+. . . .|.+||.
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~ 274 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 274 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 3577899999997 66543 34579999987664 32 2222333456789999999998653 2 2 3888885
No 211
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.32 E-value=0.17 Score=47.27 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=77.9
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-cCCCCCCCeeEEEeCCCCCEEEEe--CCcceEEEEeeeccC
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-AFPGLGSPIRYVDVTYDGRWILGT--TDTYLILICTLFTDK 105 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-~lpglGdPI~~vdvS~DG~~lLaT--~~~~L~L~dt~~~~~ 105 (244)
.-+..+||.+.+|. +|.||.|+.+++|.....+..+. -.-|+++.|.-++..|---=+++| .+..|++||.+..
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~-- 97 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG-- 97 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC--
Confidence 34578999999998 99999999999999976665542 335889999999887554444444 4789999997631
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
||. .+ +...|+++ .-.|.+ .++.+|++.-+.-+.+.|.++-+
T Consensus 98 ---------------k~~---~~-----i~~~~eni-----~i~wsp---~g~~~~~~~kdD~it~id~r~~~ 139 (313)
T KOG1407|consen 98 ---------------KCT---AR-----IETKGENI-----NITWSP---DGEYIAVGNKDDRITFIDARTYK 139 (313)
T ss_pred ---------------cEE---EE-----eeccCcce-----EEEEcC---CCCEEEEecCcccEEEEEecccc
Confidence 011 01 01122222 123333 26888888888888887776544
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.29 E-value=0.21 Score=47.61 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=46.9
Q ss_pred CceeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877 31 TNFQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT 100 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt 100 (244)
....+.+.+|+|. ||..+.+ ..|.+||..+++.. .+-.+.....++.+||||++|+.+. . . .|.+||.
T Consensus 204 ~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~ 279 (433)
T PRK04922 204 EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDL 279 (433)
T ss_pred CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEEC
Confidence 3567889999997 8877744 36999999765432 2223333456789999999987543 2 2 3888875
No 213
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=95.25 E-value=0.051 Score=52.07 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=64.3
Q ss_pred CCceecccccccCCCCceeEEEecCCCc-EEEeCC----CCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEE
Q 044877 16 APVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSL----DGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILG 89 (244)
Q Consensus 16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~----dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLa 89 (244)
+++..|.|.. .++|.|++....++ |+.|+. +-.+-|||.+..++ .....+.|.|.||+|.|.|..--+|.
T Consensus 107 ~a~~~~~~~~----~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 107 SARISWTQQS----GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred hhheeccCCC----CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE
Confidence 4456665542 78999999997766 788875 55689999986655 45567889999999999987766664
Q ss_pred e-C-CcceEEEEeeec
Q 044877 90 T-T-DTYLILICTLFT 103 (244)
Q Consensus 90 T-~-~~~L~L~dt~~~ 103 (244)
+ + +.++-|+|+...
T Consensus 183 SGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKD 198 (376)
T ss_pred eecccceEEeeecCCC
Confidence 4 4 788999998753
No 214
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.25 E-value=0.29 Score=45.23 Aligned_cols=66 Identities=11% Similarity=0.047 Sum_probs=46.8
Q ss_pred eeEEEecCCCc-EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C---cceEEEEe
Q 044877 33 FQCFASTGDGS-IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D---TYLILICT 100 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~---~~L~L~dt 100 (244)
..+.+.+|+|. ||..+.. ..|++||..+++. + .+..+...+.++.+||||+.|+.+. . ..|.+||.
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~ 265 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-E-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDL 265 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-E-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEEC
Confidence 56778999998 7766544 4799999976642 2 3444666777899999999987553 2 23777774
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=95.13 E-value=0.1 Score=53.11 Aligned_cols=128 Identities=18% Similarity=0.324 Sum_probs=82.9
Q ss_pred eeccccc---ccCCC-CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceec--------CCCCC--CCeeEEEeCCC
Q 044877 19 LNWSQGH---QFSRG-TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTA--------FPGLG--SPIRYVDVTYD 83 (244)
Q Consensus 19 ~~~~~~k---~Y~~~-~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~--------lpglG--dPI~~vdvS~D 83 (244)
+|+.|+. -|++. -...+|..++ +|-||+|..+|.+-.||-+....+.++ .|+-. ..|++|.|+.|
T Consensus 160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~ 239 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD 239 (703)
T ss_pred EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC
Confidence 5566653 23333 4577888888 777999999999999999865444322 22211 24999999999
Q ss_pred CCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEE
Q 044877 84 GRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLV 162 (244)
Q Consensus 84 G~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~Iv 162 (244)
|-.+.+.+ ..++.|+|.+-. .|.+.+ .|...+---+|.|..- .++..++
T Consensus 240 gL~~aVGts~G~v~iyDLRa~-------------------~pl~~k---------dh~~e~pi~~l~~~~~--~~q~~v~ 289 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRAS-------------------KPLLVK---------DHGYELPIKKLDWQDT--DQQNKVV 289 (703)
T ss_pred ceeEEeeccCCcEEEEEcccC-------------------Cceeec---------ccCCccceeeeccccc--CCCceEE
Confidence 99998776 477999997631 344444 1222333346676432 2556666
Q ss_pred EeeCCeEEEEechh
Q 044877 163 ATVGKFSVIWNFQQ 176 (244)
Q Consensus 163 tStG~fvvvWn~~k 176 (244)
+.--.-+-+|+-..
T Consensus 290 S~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 290 SMDKRILKIWDECT 303 (703)
T ss_pred ecchHHhhhccccc
Confidence 66666677787543
No 216
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.05 E-value=0.44 Score=45.37 Aligned_cols=57 Identities=21% Similarity=0.100 Sum_probs=41.5
Q ss_pred eEEEecCCCc-EE-EeCCCC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877 34 QCFASTGDGS-IV-VGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 34 t~vats~~G~-Ia-vGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~ 92 (244)
.+.+.+|+|. |+ +.+.+| +|.+||..+++ .+ .+........+.++||||++|+.+++
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~-~lt~~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LT-RLTNHFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eE-ECccCCCCccceEECCCCCEEEEEEC
Confidence 4788999997 65 556666 59999987664 33 23334445678899999999998774
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.01 E-value=0.18 Score=55.03 Aligned_cols=75 Identities=19% Similarity=0.283 Sum_probs=55.5
Q ss_pred cC-CCCceeEEEecCCCc-EEEeCCCCcEEEEeccc--------------------------------------------
Q 044877 27 FS-RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS-------------------------------------------- 60 (244)
Q Consensus 27 Y~-~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~-------------------------------------------- 60 (244)
|. .++.++++..=+.|+ +|+|+.||.|++.+.--
T Consensus 1094 ys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~ 1173 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS 1173 (1431)
T ss_pred EeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc
Confidence 44 677888888888887 89999999998887631
Q ss_pred ---------ccc---ceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeec
Q 044877 61 ---------MRQ---AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFT 103 (244)
Q Consensus 61 ---------~r~---aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~ 103 (244)
... .| .-|.+ .-|++++++|-+.|++..+ ...|.|||.+++
T Consensus 1174 ~iv~~D~r~~~~~w~lk-~~~~h-G~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1174 RIVSWDTRMRHDAWRLK-NQLRH-GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred ceEEecchhhhhHHhhh-cCccc-cceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 001 12 11223 3699999999999999655 677999999864
No 218
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=94.93 E-value=0.25 Score=47.21 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=82.7
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccC
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDK 105 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~ 105 (244)
-+.+|+|.++++. ||++-...+|-+|...+.. .+.| |..+-.+|++||.+|-..-|+..+ +..--+|... .++
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~ht-ls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~~ 88 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHT-LSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SGG 88 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceecee-hhhhCcceeEEeecCCCCceeEccCCCCccccccC-CCC
Confidence 4689999999998 9999999999999986543 3443 556888999999999998885444 4445566532 111
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
.=||.+-+|+|+-. . + .-+|.+ .+....|+|+++.+-+|-|++
T Consensus 89 -------------~WkptlvLlRiNrA--------A--t--~V~WsP---~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 89 -------------TWKPTLVLLRINRA--------A--T--CVKWSP---KENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred -------------eeccceeEEEeccc--------e--e--eEeecC---cCceEEeccCccEEEEEEEec
Confidence 12488888884321 1 1 234543 367788899999999988875
No 219
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.91 E-value=0.1 Score=52.50 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=59.7
Q ss_pred CceeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-cceEEEEee
Q 044877 31 TNFQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-TYLILICTL 101 (244)
Q Consensus 31 ~~Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~~L~L~dt~ 101 (244)
..++||...-.. +||++|.-|+|-+-...+..++.++-.+-|+.+..++.|+-.+++|++. + ..+.|||++
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 458899988844 5999999999999999887666665566788999999999999999775 4 669999985
No 220
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.91 E-value=0.52 Score=43.57 Aligned_cols=57 Identities=23% Similarity=0.121 Sum_probs=39.9
Q ss_pred eEEEecCCCc-EE-EeCCCC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877 34 QCFASTGDGS-IV-VGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 34 t~vats~~G~-Ia-vGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~ 92 (244)
.+++++|+|. |+ +.+.+| .|.+||..++. .+ .+........+.+++|||++|+.++.
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~-~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LT-RLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCC-EE-ECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 4678999997 65 556665 48888986553 33 23344555678899999999987664
No 221
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.89 E-value=0.049 Score=30.51 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=26.7
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEE
Q 044877 68 FPGLGSPIRYVDVTYDGRWILGTTD-TYLILIC 99 (244)
Q Consensus 68 lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~d 99 (244)
+..+..+|.++++.+++.++++.+. +.+++||
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4467789999999999999987774 7799986
No 222
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=94.85 E-value=0.27 Score=46.71 Aligned_cols=170 Identities=15% Similarity=0.237 Sum_probs=96.9
Q ss_pred ccCCCCceeEEEec----CCCcEEEeCCC----CcEEEEec--cccc-cceecCCCCCCCeeEEEeCCCCC----EEEEe
Q 044877 26 QFSRGTNFQCFAST----GDGSIVVGSLD----GKIRLYSS--NSMR-QAKTAFPGLGSPIRYVDVTYDGR----WILGT 90 (244)
Q Consensus 26 ~Y~~~~~Ft~vats----~~G~IavGS~d----G~IRLyD~--~~~r-~aKt~lpglGdPI~~vdvS~DG~----~lLaT 90 (244)
.|..--+.-+++.+ ..-+||+||.. +.|-+--. .++. ..+..++ |--|++-+-+.||.+ -||||
T Consensus 40 ~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd-~~YP~tK~~wiPd~~g~~pdlLAT 118 (364)
T KOG0290|consen 40 TYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFD-HPYPVTKLMWIPDSKGVYPDLLAT 118 (364)
T ss_pred EecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCC-CCCCccceEecCCccccCcchhhc
Confidence 44555555566666 34459999974 33443322 2221 1222233 778999999999985 47899
Q ss_pred CCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceee--eeeeeecCCCCcceEEEEeeCCe
Q 044877 91 TDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHK--AQFSWVTENGKQERHLVATVGKF 168 (244)
Q Consensus 91 ~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~--akFn~~tg~~~~E~~IvtStG~f 168 (244)
|.++||||.+...+ .+-+++ -+.-..++-.|-- .-|+|..-+ -..+++.|.+.-
T Consensus 119 s~D~LRlWri~~ee------------------~~~~~~----~~L~~~kns~~~aPlTSFDWne~d--p~~igtSSiDTT 174 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEE------------------SRVELQ----SVLNNNKNSEFCAPLTSFDWNEVD--PNLIGTSSIDTT 174 (364)
T ss_pred ccCeEEEEeccCcC------------------Cceehh----hhhccCcccccCCcccccccccCC--cceeEeecccCe
Confidence 99999999974311 111111 1111111112211 279997422 577888889999
Q ss_pred EEEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCCCCCEE--EEcCCceeeeeecc
Q 044877 169 SVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLV--IATPMKVSSFSISS 241 (244)
Q Consensus 169 vvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~ii--va~~~~v~~~~~~~ 241 (244)
-.+||++.=..|... -++-.-+.+|.|-.|-. |+ .+|. |.-.-.|.||.++.
T Consensus 175 CTiWdie~~~~~~vk-------------TQLIAHDKEV~DIaf~~-----~s---~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVK-------------TQLIAHDKEVYDIAFLK-----GS---RDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred EEEEEEeecccccee-------------eEEEecCcceeEEEecc-----Cc---cceEEEecCCCcEEEEEecc
Confidence 999999985443332 24555666666554332 11 2322 23345678887754
No 223
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.11 Score=52.24 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=45.1
Q ss_pred eEEEecCCCcE-EE---eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeC------CcceEEEEe
Q 044877 34 QCFASTGDGSI-VV---GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTT------DTYLILICT 100 (244)
Q Consensus 34 t~vats~~G~I-av---GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~------~~~L~L~dt 100 (244)
.++-++|.|+| +. |..-|+|-+||..+.++. ..+...+ -+-.+.+|||+|+| ||| +|.++||+.
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-AKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccchhhc-cccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 46778999994 44 567899999999774422 1223222 24469999999999 665 377889985
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.55 E-value=0.2 Score=48.32 Aligned_cols=117 Identities=19% Similarity=0.234 Sum_probs=75.6
Q ss_pred ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc------------------------------------------
Q 044877 26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR------------------------------------------ 62 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r------------------------------------------ 62 (244)
.|-++.-.-.|+-+|.++ ||+||.||.+|+-.-.+=+
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 567777888999999888 9999999999985543211
Q ss_pred ---------------------cce--ecCCCCCCCeeEEEeCCCCCEEEEeCC---cceEEEEeeeccCCCCcccccccc
Q 044877 63 ---------------------QAK--TAFPGLGSPIRYVDVTYDGRWILGTTD---TYLILICTLFTDKNGTTKTGFNGR 116 (244)
Q Consensus 63 ---------------------~aK--t~lpglGdPI~~vdvS~DG~~lLaT~~---~~L~L~dt~~~~~~~~~~~GF~~~ 116 (244)
..| |-.|.=.--|--+++|+|..|+..-.+ |-|-|||.+-.
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l------------- 352 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL------------- 352 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh-------------
Confidence 111 112211223455799999999865555 44999997521
Q ss_pred cCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 117 MGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 117 ~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
+-...+.|. +++ -.|.|.++ ..+.++..++.-++.|...
T Consensus 353 ----~l~avLiQk---------~pi----raf~WdP~---~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 353 ----KLHAVLIQK---------HPI----RAFEWDPG---RPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred ----hhhhhhhhc---------cce----eEEEeCCC---CceEEEEcCCceEEEEcCC
Confidence 001111221 233 36888653 5788888889999999764
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.46 E-value=0.073 Score=54.08 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=51.4
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC-CCCCEEEEeCC-cceEEEEee
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT-YDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS-~DG~~lLaT~~-~~L~L~dt~ 101 (244)
.|++.++.+|- +++|+..|.|-+||++..+-....-.+-.-||..+++- .|++-.|++|+ ..|+|||-.
T Consensus 231 vTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~ 302 (703)
T KOG2321|consen 231 VTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDEC 302 (703)
T ss_pred ceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccc
Confidence 78999999995 99999999999999965432111112445799999985 35556667776 569999964
No 226
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.34 E-value=0.18 Score=49.34 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=76.3
Q ss_pred eeEEEecC-CCc-EEEeCCCCcEEEEeccccc-------cceecCCCCCCCeeEEEeCCCCCEEE--EeCCcceEEEEee
Q 044877 33 FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMR-------QAKTAFPGLGSPIRYVDVTYDGRWIL--GTTDTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r-------~aKt~lpglGdPI~~vdvS~DG~~lL--aT~~~~L~L~dt~ 101 (244)
..-++..| +.+ ||+||.|-+|.+|+..-.- -.+ .|-||.-.|-.|...|-..-|| |.|++.+.||+.-
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv-~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVV-ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG 162 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceE-EEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence 34455666 334 9999999999999985211 122 3456677777788888887777 4578999999973
Q ss_pred eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
. |+ -++.|+ |+---....||+. +.....|+-++-|=+||-++
T Consensus 163 t----ge----------------ali~l~--------hpd~i~S~sfn~d-----Gs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 163 T----GE----------------ALITLD--------HPDMVYSMSFNRD-----GSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred C----Cc----------------eeeecC--------CCCeEEEEEeccC-----CceeeeecccceeEEEcCCC
Confidence 2 21 233322 4544567788852 57889999999999999765
No 227
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=94.27 E-value=0.54 Score=46.06 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=79.2
Q ss_pred CCCceeEEEecCCC--cEEEeCCCCcEEEEeccccccce--------ecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEE
Q 044877 29 RGTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQAK--------TAFPGLGSPIRYVDVTYDGRWILGTTD-TYLIL 97 (244)
Q Consensus 29 ~~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~aK--------t~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L 97 (244)
...+..++.+.+++ .+|+|+.|-+||+|-.......+ ..|-+|+-.|..|.++|+|..|.+..+ ..+.|
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 45677788888844 49999999999999875322111 245678899999999999998765556 55999
Q ss_pred EEee---eccCCCCcccccccccC-CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 98 ICTL---FTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 98 ~dt~---~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
|-.. +. +...-. ..|+.=...+ ..-|+. =+.-.-.|.+ ...-.+++|.++-++.||
T Consensus 92 Wk~~~~~~~---------~~d~e~~~~ke~w~v~k------~lr~h~--~diydL~Ws~---d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 92 WKQGDVRIF---------DADTEADLNKEKWVVKK------VLRGHR--DDIYDLAWSP---DSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred EEecCcCCc---------cccchhhhCccceEEEE------Eecccc--cchhhhhccC---CCceeeeeeccceEEEEE
Confidence 9753 21 111100 0111111111 111211 0111334543 257889999999999999
Q ss_pred chh
Q 044877 174 FQQ 176 (244)
Q Consensus 174 ~~k 176 (244)
+.+
T Consensus 152 v~~ 154 (434)
T KOG1009|consen 152 VHA 154 (434)
T ss_pred ecc
Confidence 864
No 228
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=94.16 E-value=0.65 Score=47.04 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=85.6
Q ss_pred Cceecccccc------cCCCCceeEEEecC-CCc-EEEeCCCCcEEEEecccccc---ce--ecCCCCCCCeeEEEeCCC
Q 044877 17 PVLNWSQGHQ------FSRGTNFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQ---AK--TAFPGLGSPIRYVDVTYD 83 (244)
Q Consensus 17 ~~~~~~~~k~------Y~~~~~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~---aK--t~lpglGdPI~~vdvS~D 83 (244)
.++-|+.... |......+|+.+++ +.+ +|.|+.+|-|=+||.+.+.. +- .+.-.|-+|++.+....+
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 3566665544 56778899999999 666 89999999999999975432 11 122357789999987766
Q ss_pred CCE--EEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchh-hcCCccceeeeeeeeecCCCCcce
Q 044877 84 GRW--ILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSH-LAGVNNKFHKAQFSWVTENGKQER 159 (244)
Q Consensus 84 G~~--lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~-~~G~~~~Ft~akFn~~tg~~~~E~ 159 (244)
..- +++++ |..|..|++.. +.. |.-..+.=..+|.. .....+.-|..+|- ++. ..+
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~----------l~~------P~e~~~~~~~~~~~~~~~~~~~~t~~~F~--~~~--p~~ 362 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDM----------LSL------PVEGLLLESKKHKGQQSSKAVGATSLKFE--PTD--PNH 362 (555)
T ss_pred CCCCceEEEecCCcEeeeeccc----------ccc------chhhcccccccccccccccccceeeEeec--cCC--Cce
Confidence 555 66555 68899998753 221 22111111111110 01112233344665 323 577
Q ss_pred EEEEeeCCeEEEEech
Q 044877 160 HLVATVGKFSVIWNFQ 175 (244)
Q Consensus 160 ~IvtStG~fvvvWn~~ 175 (244)
.||++...+|+.=+-+
T Consensus 363 FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRK 378 (555)
T ss_pred EEEEcCCcEEEEEecc
Confidence 9999999999884333
No 229
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.11 Score=48.34 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=47.9
Q ss_pred ecCCCc-EEEeCCCCcEEEEeccccc--cceecCCCCCCCeeEEEeCC--CCCEEEEeC-CcceEEEEe
Q 044877 38 STGDGS-IVVGSLDGKIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTY--DGRWILGTT-DTYLILICT 100 (244)
Q Consensus 38 ts~~G~-IavGS~dG~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~--DG~~lLaT~-~~~L~L~dt 100 (244)
++-.|. ||++|.||.||+|..+... +....|.|+..|+.-++.-. -|..|.+.+ +..++||.-
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 344455 9999999999999997543 23345679999999999986 787765444 577999975
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.14 E-value=0.07 Score=50.65 Aligned_cols=68 Identities=13% Similarity=0.236 Sum_probs=46.9
Q ss_pred eEEEecCCCc-EEEe----CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--Cc-ceEEEEee
Q 044877 34 QCFASTGDGS-IVVG----SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DT-YLILICTL 101 (244)
Q Consensus 34 t~vats~~G~-IavG----S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~-~L~L~dt~ 101 (244)
--+.++|++. +.+. ...+.|-++|..+.+..++.-++-|-++.|+.+|+||+++..+. .+ .|.++|+.
T Consensus 272 lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~ 347 (369)
T PF02239_consen 272 LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK 347 (369)
T ss_dssp --EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence 4578899886 8777 66799999999988767766566666799999999999888775 35 79999974
No 231
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.12 E-value=0.85 Score=46.93 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=65.8
Q ss_pred cceeeecc---cCCCceecccccccCCCCc-eeEEEecCCCcEEEeCCCC-cEEEEeccccccc-eecCCCCCCCeeEEE
Q 044877 6 GIVQNLAN---AGAPVLNWSQGHQFSRGTN-FQCFASTGDGSIVVGSLDG-KIRLYSSNSMRQA-KTAFPGLGSPIRYVD 79 (244)
Q Consensus 6 ~~~~~~~~---~~~~~~~~~~~k~Y~~~~~-Ft~vats~~G~IavGS~dG-~IRLyD~~~~r~a-Kt~lpglGdPI~~vd 79 (244)
|.|++... .+..-+.|.....+.++-. .+-+..+.-+.+|+-+.+| .+.+||.....-- ...+ ...++|.++|
T Consensus 1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLD 79 (631)
T PF12234_consen 1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLD 79 (631)
T ss_pred CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeece
Confidence 55555542 3556788999888877766 5566666777765555544 5899999654311 1112 3489999998
Q ss_pred eC--CCCCEEEEeC-CcceEEEEee
Q 044877 80 VT--YDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 80 vS--~DG~~lLaT~-~~~L~L~dt~ 101 (244)
.+ |||+.|||-+ .+.++|+-..
T Consensus 80 Wtst~d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 80 WTSTPDGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred eeecCCCCEEEEEEcCcEEEEEEcc
Confidence 76 9999999998 5778887654
No 232
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=94.12 E-value=0.13 Score=48.90 Aligned_cols=70 Identities=17% Similarity=0.265 Sum_probs=54.3
Q ss_pred eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC-CEEEEe-CCcceEEEEeee
Q 044877 33 FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG-RWILGT-TDTYLILICTLF 102 (244)
Q Consensus 33 Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG-~~lLaT-~~~~L~L~dt~~ 102 (244)
.-.+.++|+-+ ||+|+.||.||+||.+.-+..-+.||+|..=+-.|.+.|-- +.||+. ++..+.|+.+.-
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 34455677544 89999999999999987766767899999999999999764 444544 467799998753
No 233
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.07 E-value=0.093 Score=52.16 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=65.1
Q ss_pred ecccCCCceeccccc-cc-----CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC
Q 044877 11 LANAGAPVLNWSQGH-QF-----SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD 83 (244)
Q Consensus 11 ~~~~~~~~~~~~~~k-~Y-----~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D 83 (244)
+.+++-.|-.|+-.- .+ .-..+.+++|.+++|+ +||.+.|-.|++||.++..+..|.. .-.|...+++|.-
T Consensus 268 ~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~--tp~~a~~ls~Sqk 345 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR--TPHPASNLSLSQK 345 (545)
T ss_pred EcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee--cCCCccccccccc
Confidence 445667788887642 22 4566789999999998 9999999999999998776554322 2567888888877
Q ss_pred CCEEEEeCC-cceEEEEeee
Q 044877 84 GRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 84 G~~lLaT~~-~~L~L~dt~~ 102 (244)
|- ||.+. +++.||--..
T Consensus 346 gl--LA~~~G~~v~iw~d~~ 363 (545)
T KOG1272|consen 346 GL--LALSYGDHVQIWKDAL 363 (545)
T ss_pred cc--eeeecCCeeeeehhhh
Confidence 75 56655 7799996443
No 234
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.06 E-value=0.29 Score=47.53 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=78.2
Q ss_pred CCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCC--CCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeecc
Q 044877 28 SRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFP--GLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTD 104 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lp--glGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~ 104 (244)
..+.++++.+.+.+-.+.++...|++..||....-.++ ..| ||=.-++.|.+|||+++||.+=+ .-||+...
T Consensus 106 v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y---- 180 (390)
T KOG3914|consen 106 VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY---- 180 (390)
T ss_pred cccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEec----
Confidence 45667778888888789999999999999987632122 334 44569999999999999954433 45887653
Q ss_pred CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhc
Q 044877 105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKN 179 (244)
Q Consensus 105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~ 179 (244)
|++--+. -...||.. |-+ +-.. ..+-..+++|.++-+.+||.++=+.
T Consensus 181 -----------------pa~f~Ie-----sfclGH~e-FVS-~isl----~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 181 -----------------PATFVIE-----SFCLGHKE-FVS-TISL----TDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred -----------------Ccccchh-----hhccccHh-hee-eeee----ccCceeeecCCCCcEEEEecccCCc
Confidence 3322222 12345542 222 1121 1234579999999999999876543
No 235
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=94.00 E-value=0.059 Score=56.78 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=60.3
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
-+-|++++..|+ |++||.|-.+++|..-+.++.- .++|+...|+.++++.+...+.|.+ +.-|+.|...
T Consensus 192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred heeeeeeccccceEeecCccceeeeeeccchhhhc-cCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 367999999998 9999999999999987777655 5799999999999999999998775 5669999853
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.91 E-value=0.28 Score=46.96 Aligned_cols=65 Identities=17% Similarity=-0.007 Sum_probs=46.2
Q ss_pred eEEEecCCCc-EEE-eCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877 34 QCFASTGDGS-IVV-GSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT 100 (244)
Q Consensus 34 t~vats~~G~-Iav-GS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt 100 (244)
.+++.+|+|. ||. .+.+|. |.+||..+++ .+. +......+.+..+||||++|+.+++ ....||..
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~ 316 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV 316 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence 4689999998 664 466664 8889997664 332 3334557889999999999997775 34556543
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=93.80 E-value=0.82 Score=44.17 Aligned_cols=68 Identities=10% Similarity=0.032 Sum_probs=44.2
Q ss_pred CceeEEEecCCCc-EEEeCC-CC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C-c--ceEEEEe
Q 044877 31 TNFQCFASTGDGS-IVVGSL-DG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D-T--YLILICT 100 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~-dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~-~--~L~L~dt 100 (244)
....+.+.+|+|. ||..+. +| .|.+||..+++. + .+........+..+||||++|+.+. . . .|.+||.
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-E-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-E-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 3466889999998 766544 33 588889876542 2 2222333445789999999998553 2 3 2666664
No 238
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=0.25 Score=47.09 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=53.4
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccc--ccc-ceecCCCCCCCeeEEEeC-CCCCEEEEeC--CcceEEEEeeec
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNS--MRQ-AKTAFPGLGSPIRYVDVT-YDGRWILGTT--DTYLILICTLFT 103 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~--~r~-aKt~lpglGdPI~~vdvS-~DG~~lLaT~--~~~L~L~dt~~~ 103 (244)
.-..||.++..|. +|++|.|+.|++||... ++= .-.....++..|.-|+.- |.==-+||+| +.++.||+-+.+
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence 5588999999998 99999999999999532 111 111345688899999766 4433455666 688999997543
No 239
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=93.75 E-value=0.15 Score=49.40 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=55.2
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
.+-||.++|++ |.++..|+.||+=....---..+++-||.+=|..|++.++-- |++.+ +++|++||..
T Consensus 154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDIT 223 (390)
T ss_pred hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce-eeecCCCCcEEEEecc
Confidence 57899999988 999999999998665433345666678999999999987655 66666 8999999974
No 240
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.73 E-value=0.22 Score=53.61 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=49.2
Q ss_pred eEEEecCCCcE-EEeCCCCcEEEEeccccccceecCCCCC--------------CCeeEEEeCCCCCEEEEeCC-cceEE
Q 044877 34 QCFASTGDGSI-VVGSLDGKIRLYSSNSMRQAKTAFPGLG--------------SPIRYVDVTYDGRWILGTTD-TYLIL 97 (244)
Q Consensus 34 t~vats~~G~I-avGS~dG~IRLyD~~~~r~aKt~lpglG--------------dPI~~vdvS~DG~~lLaT~~-~~L~L 97 (244)
.+++++++|.| ++-+.++.||.||..++... + +.+.| ....+|++++||+.++|.+. +.|++
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-T-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-E-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 58999999994 56677889999998655322 1 22222 24579999999998888775 66999
Q ss_pred EEee
Q 044877 98 ICTL 101 (244)
Q Consensus 98 ~dt~ 101 (244)
||..
T Consensus 885 id~~ 888 (1057)
T PLN02919 885 LDLN 888 (1057)
T ss_pred EECC
Confidence 9974
No 241
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=93.67 E-value=0.94 Score=46.18 Aligned_cols=181 Identities=17% Similarity=0.230 Sum_probs=98.7
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCee-----------------------------------
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIR----------------------------------- 76 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~----------------------------------- 76 (244)
..|...+++|. +++.++||.|++|.+.++ .+..+-..+.||.
T Consensus 107 ~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRA 184 (737)
T ss_pred hhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEec
Confidence 46777889998 999999999999999654 2222333444444
Q ss_pred ------EEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcC--Cccceeee-
Q 044877 77 ------YVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAG--VNNKFHKA- 146 (244)
Q Consensus 77 ------~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G--~~~~Ft~a- 146 (244)
+++.++....|++.-.+. ..+||.+ |.+-|.+..-+- |. --+.-.||...+.| +...|++.
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey-~I-TSva~npd~~~~v~S~nt~R~~~p~ 255 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEY-AI-TSVAFNPEKDYLLWSYNTARFSSPR 255 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeeccc-------CcccccCChhcc-ce-eeeeeccccceeeeeeeeeeecCCC
Confidence 445555555444444322 5566642 334455432111 11 23455677555555 34566665
Q ss_pred -----eeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCcccccc-----------c
Q 044877 147 -----QFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDS-----------R 210 (244)
Q Consensus 147 -----kFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~-----------~ 210 (244)
..+|.. +...-..-|++|..++..=.++=+.-. .+++..+++..+.. +
T Consensus 256 ~GSifnlsWS~--DGTQ~a~gt~~G~v~~A~~ieq~l~~~--------------n~~~t~~~r~~I~vrdV~~~v~d~LE 319 (737)
T KOG1524|consen 256 VGSIFNLSWSA--DGTQATCGTSTGQLIVAYAIEQQLVSG--------------NLKATSKSRKSITVRDVATGVQDILE 319 (737)
T ss_pred ccceEEEEEcC--CCceeeccccCceEEEeeeehhhhhhc--------------cceeEeeccceEEeehhhhhHHHHhh
Confidence 345654 224556677888888777665544211 11222222222111 1
Q ss_pred eecCccccCCCCCCCEEEEcCCceeeeeecc
Q 044877 211 FMHDKFAVSDLPEAPLVIATPMKVSSFSISS 241 (244)
Q Consensus 211 f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~ 241 (244)
|.+---+|+ -.-..+||||...|.-.+.-+
T Consensus 320 ~p~rv~k~s-L~Y~hLvvaTs~qvyiys~kn 349 (737)
T KOG1524|consen 320 FPQRVVKFS-LGYGHLVVATSLQVYIYSEKN 349 (737)
T ss_pred Cccceeeee-eceeEEEEEeccEEEEEecCC
Confidence 111111222 224689999999998877644
No 242
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.58 E-value=1.9 Score=42.30 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=77.5
Q ss_pred cEEEeCCCCcEEEEeccccc-cc-eecCC-CCCCCeeEEEe----CCCCCEEEEe-CCcceEEEEeeeccCCCCcccccc
Q 044877 43 SIVVGSLDGKIRLYSSNSMR-QA-KTAFP-GLGSPIRYVDV----TYDGRWILGT-TDTYLILICTLFTDKNGTTKTGFN 114 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r-~a-Kt~lp-glGdPI~~vdv----S~DG~~lLaT-~~~~L~L~dt~~~~~~~~~~~GF~ 114 (244)
.|++||..|.+|+|+-.... .. -.+|. .+++||..|.. +..+...||- ..+.|.+|.....++..+..
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g---- 114 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG---- 114 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC----
Confidence 49999999999999984322 11 12332 58999999964 3344444444 56889999886554432211
Q ss_pred cccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 115 GRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 115 ~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
.-..|.+-.||.. .-...||+.+.|-- ....+.+.|=|.+..+-+++=+.+.
T Consensus 115 --------~~~~L~~~yeh~l-~~~a~nm~~G~Fgg---~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 115 --------NQYQLELIYEHSL-QRTAYNMCCGPFGG---VKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred --------cEEEEEEEEEEec-ccceeEEEEEECCC---CCCceEEEEEecCceEEEEeCCcEE
Confidence 2245666667652 22356888888862 2225888888888888877755554
No 243
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=93.40 E-value=0.22 Score=34.45 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=28.8
Q ss_pred ccCCCCceeEEEecCCCc-EEEeCCCCcEEEEecc
Q 044877 26 QFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSN 59 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~ 59 (244)
+.....+.++++.+|... ||+|+.||.|.+|+..
T Consensus 7 ~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 7 EKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 344455688999999988 9999999999999983
No 244
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.32 E-value=1.1 Score=49.07 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=52.5
Q ss_pred ccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccc------cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cce
Q 044877 24 GHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR------QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYL 95 (244)
Q Consensus 24 ~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r------~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L 95 (244)
.+.-+.... ..++.++++. .|+||.||.||+||.+... +....+...|.++..+..=+.|..+++.++ ..+
T Consensus 1044 L~Ehs~~v~-k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1044 LHEHSSAVI-KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhcccccc-ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 333344444 3444555655 9999999999999996221 122234448999999999999999987775 557
Q ss_pred EEEEe
Q 044877 96 ILICT 100 (244)
Q Consensus 96 ~L~dt 100 (244)
++.+.
T Consensus 1123 ~~~~i 1127 (1431)
T KOG1240|consen 1123 RVLRI 1127 (1431)
T ss_pred EEEEc
Confidence 77665
No 245
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.10 E-value=0.42 Score=48.06 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=53.5
Q ss_pred CceeEEEecCCCcEEEeCCCC-cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEe
Q 044877 31 TNFQCFASTGDGSIVVGSLDG-KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICT 100 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS~dG-~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt 100 (244)
..+.-+.+.++ ..|+|..|| .+-+||..++. +|-..+++| -|-.|.+++||++++++.+.. |.++|.
T Consensus 362 VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~el~vidi 430 (668)
T COG4946 362 VRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG-NIEAVKVSPDGKKVVVANDRFELWVIDI 430 (668)
T ss_pred eEEEEEccCCc-ceEEeccCCceEEEEecCCce-EEEeeCCcc-ceEEEEEcCCCcEEEEEcCceEEEEEEe
Confidence 44555666666 489999999 79999998885 665667777 599999999999999887755 888875
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.00 E-value=0.45 Score=47.83 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=55.4
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-----CcceEEEEee
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-----DTYLILICTL 101 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-----~~~L~L~dt~ 101 (244)
+..+++.+++|. ++++...++|-++|.-+++ ++..-..--+-|+.++++||++|++=+- ...|+|+|..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC
Confidence 478999999998 9999999999999998874 6633334456899999999999998543 2448888863
No 247
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=92.92 E-value=0.61 Score=47.28 Aligned_cols=115 Identities=17% Similarity=0.341 Sum_probs=73.0
Q ss_pred CCceeEEEecCCC--cEEEeCCCCcEEEEeccccc---------------------cc-eecCCC----C-CCCeeEEEe
Q 044877 30 GTNFQCFASTGDG--SIVVGSLDGKIRLYSSNSMR---------------------QA-KTAFPG----L-GSPIRYVDV 80 (244)
Q Consensus 30 ~~~Ft~vats~~G--~IavGS~dG~IRLyD~~~~r---------------------~a-Kt~lpg----l-GdPI~~vdv 80 (244)
++..||+..=+.+ .+.+...+|..-+||....- +. ++.=|- + ..+|..+++
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4667888887743 38889999999999763100 01 110110 1 238999999
Q ss_pred CCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcce
Q 044877 81 TYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQER 159 (244)
Q Consensus 81 S~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~ 159 (244)
||||++|++-+ +.+|||+|- .+ -.+|-+- + -|.|+= . ...|.+ + +..
T Consensus 299 S~DG~~LA~VSqDGfLRvF~f-------------dt--------~eLlg~m--k-SYFGGL---L--CvcWSP-D--GKy 346 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDF-------------DT--------QELLGVM--K-SYFGGL---L--CVCWSP-D--GKY 346 (636)
T ss_pred cCCCceEEEEecCceEEEeec-------------cH--------HHHHHHH--H-hhccce---E--EEEEcC-C--ccE
Confidence 99999998878 588999993 31 0011000 0 122221 1 456754 3 577
Q ss_pred EEEEeeCCeEEEEechh
Q 044877 160 HLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 160 ~IvtStG~fvvvWn~~k 176 (244)
++++-.+-.|-||+|..
T Consensus 347 IvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEE 363 (636)
T ss_pred EEecCCcceEEEEEecc
Confidence 88888899999999975
No 248
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=92.90 E-value=0.092 Score=50.37 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=48.7
Q ss_pred eEEEecCCCc--EEEeCCCCcEEEEeccccc----cce-----------ecCCCCCCCeeEEEeCCCCCEEEEeCCcceE
Q 044877 34 QCFASTGDGS--IVVGSLDGKIRLYSSNSMR----QAK-----------TAFPGLGSPIRYVDVTYDGRWILGTTDTYLI 96 (244)
Q Consensus 34 t~vats~~G~--IavGS~dG~IRLyD~~~~r----~aK-----------t~lpglGdPI~~vdvS~DG~~lLaT~~~~L~ 96 (244)
++.-++|.-+ +.-.|.+|.|+|-|.+... ..| ..+.+.-..|..+.+|++|+|||+-.-.++.
T Consensus 225 tSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvk 304 (460)
T COG5170 225 TSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVK 304 (460)
T ss_pred hhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEE
Confidence 4445566444 6678899999999996211 111 1222334578888999999999998889999
Q ss_pred EEEeee
Q 044877 97 LICTLF 102 (244)
Q Consensus 97 L~dt~~ 102 (244)
|||...
T Consensus 305 iwDvnm 310 (460)
T COG5170 305 IWDVNM 310 (460)
T ss_pred EEeccc
Confidence 999853
No 249
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.75 E-value=4.8 Score=35.21 Aligned_cols=56 Identities=21% Similarity=0.245 Sum_probs=42.2
Q ss_pred cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877 43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL 101 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~ 101 (244)
.|++|..+| +-+|+......-+. +... .+|+.|.+-++-..+|+=++.+|.+++..
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~-i~~~-~~I~ql~vl~~~~~llvLsd~~l~~~~L~ 64 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTR-ILKL-SSITQLSVLPELNLLLVLSDGQLYVYDLD 64 (275)
T ss_pred EEEEEECCC-EEEEEecCCcccee-Eeec-ceEEEEEEecccCEEEEEcCCccEEEEch
Confidence 599999999 88998832222222 2212 24999999999999999999999999864
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.61 E-value=0.52 Score=43.58 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=50.2
Q ss_pred cCCCCceeEEEecCCCc-EEEeC-CCCcEEEEecc--ccc--cceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEE
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGS-LDGKIRLYSSN--SMR--QAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILI 98 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS-~dG~IRLyD~~--~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~ 98 (244)
+...+.=..++.+|+|. ++++. ..+.|-+|+.. +++ ... .++--|.--.++.++|||+||++++. +.|.++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~-~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf 319 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ-TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVF 319 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE-EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE-EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEE
Confidence 33334557899999998 65544 56779999982 222 222 34545776799999999999999885 669888
Q ss_pred Ee
Q 044877 99 CT 100 (244)
Q Consensus 99 dt 100 (244)
+.
T Consensus 320 ~~ 321 (345)
T PF10282_consen 320 DI 321 (345)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 251
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=92.56 E-value=2 Score=41.98 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=54.6
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCC---CCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeec
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFP---GLGSPIRYVDVTYDGRWILGTTDTYLILICTLFT 103 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lp---glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~ 103 (244)
-|+-+-.||+|+ +..++-|+.-|||... +.+|..+ +-| .|++-+.||+|++||-+|...=+|+-..+.
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~---q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQEN---QSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhc---ccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence 378889999998 8999999999999652 3333333 233 999999999999999999877778887754
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=92.56 E-value=0.6 Score=44.68 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=46.6
Q ss_pred EecCCCc-EEEeCC----------CCcEEEEeccccccceecCC--C-----CCCCeeEEEeCCCCCEEEEe--C-Ccce
Q 044877 37 ASTGDGS-IVVGSL----------DGKIRLYSSNSMRQAKTAFP--G-----LGSPIRYVDVTYDGRWILGT--T-DTYL 95 (244)
Q Consensus 37 ats~~G~-IavGS~----------dG~IRLyD~~~~r~aKt~lp--g-----lGdPI~~vdvS~DG~~lLaT--~-~~~L 95 (244)
..|++|. |++++. ++.|.+||..+.+-.+. +| . .|.--..+.+||||+||+.. + .+.+
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~-i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIAD-IELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeE-EccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 4888887 776666 89999999987764442 34 1 13334588999999999954 3 4779
Q ss_pred EEEEee
Q 044877 96 ILICTL 101 (244)
Q Consensus 96 ~L~dt~ 101 (244)
-++|+.
T Consensus 131 ~VvD~~ 136 (352)
T TIGR02658 131 GVVDLE 136 (352)
T ss_pred EEEECC
Confidence 999975
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.34 E-value=1.1 Score=41.49 Aligned_cols=73 Identities=16% Similarity=0.317 Sum_probs=48.6
Q ss_pred CCCCceeEEEecCCCc--EEEeCCCCcEEEEecc--ccc--cc--eecCCC--CCC-CeeEEEeCCCCCEEEEeCC--cc
Q 044877 28 SRGTNFQCFASTGDGS--IVVGSLDGKIRLYSSN--SMR--QA--KTAFPG--LGS-PIRYVDVTYDGRWILGTTD--TY 94 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~--IavGS~dG~IRLyD~~--~~r--~a--Kt~lpg--lGd-PI~~vdvS~DG~~lLaT~~--~~ 94 (244)
..+.-=..++++++|. .++.-.++.|-.|+.. .++ .. -..+|. .+. .-.+|.+||||+||.++.. ++
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 3333346799999997 4677788999999886 211 11 112332 112 5678999999999998874 77
Q ss_pred eEEEEe
Q 044877 95 LILICT 100 (244)
Q Consensus 95 L~L~dt 100 (244)
|.+++.
T Consensus 269 I~vf~~ 274 (345)
T PF10282_consen 269 ISVFDL 274 (345)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 254
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.26 E-value=0.51 Score=44.92 Aligned_cols=65 Identities=18% Similarity=0.068 Sum_probs=44.3
Q ss_pred eeEEEecCCCc-EE-EeCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc----ceEEEE
Q 044877 33 FQCFASTGDGS-IV-VGSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT----YLILIC 99 (244)
Q Consensus 33 Ft~vats~~G~-Ia-vGS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~----~L~L~d 99 (244)
..+.+.+|+|. || +.+.+|. |.+||..++. .+ .|-.......+.++||||++|+.+++. .|.+||
T Consensus 248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 34778999997 54 6677776 6666886654 33 233344467789999999999977642 355656
No 255
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.16 E-value=0.29 Score=50.62 Aligned_cols=92 Identities=18% Similarity=0.194 Sum_probs=66.7
Q ss_pred ccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccC
Q 044877 26 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDK 105 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~ 105 (244)
-..-..+.||++++.+ +|+.|+.-|-+-||.+-++...+.-..+-..-|+...+|++..+++|+|.+...-|-....
T Consensus 31 ~~~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-- 107 (726)
T KOG3621|consen 31 FFPARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-- 107 (726)
T ss_pred cCcceEEEEEeecCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc--
Confidence 3455667999999998 8999999999999999665444422233223455669999999999999988776664321
Q ss_pred CCCcccccccccCCCCCcceeeeeCccchh
Q 044877 106 NGTTKTGFNGRMGNKIAAPRLLKLTPLDSH 135 (244)
Q Consensus 106 ~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~ 135 (244)
..+|+...++|+|..
T Consensus 108 ---------------~~p~~~~~~t~~d~~ 122 (726)
T KOG3621|consen 108 ---------------ELPRDLDYVTPCDKS 122 (726)
T ss_pred ---------------cCCCcceeecccccc
Confidence 135667777888874
No 256
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=92.12 E-value=0.18 Score=47.27 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=56.5
Q ss_pred eeEEEecCCCc--EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC-CCCCEEEEeC-CcceEEEEee
Q 044877 33 FQCFASTGDGS--IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT-YDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~--IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS-~DG~~lLaT~-~~~L~L~dt~ 101 (244)
.+|++.+|.-+ +++|+.||.|-|||.+...+--.+|..+..||.-|-|. .|+..|+..+ +..|..||..
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 88999999654 89999999999999976644444567789999999999 5777777666 5779999975
No 257
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.92 E-value=0.6 Score=50.51 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=46.5
Q ss_pred CCcEEEeCCCCcEEEEeccccccce--ecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 41 DGSIVVGSLDGKIRLYSSNSMRQAK--TAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 41 ~G~IavGS~dG~IRLyD~~~~r~aK--t~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
.+-||+|+..|.|-++|.++- .+ ..=...+.||++++++.||+.+++.-. .-+.+||+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~ 160 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH 160 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc
Confidence 345999999999999998651 22 111346789999999999999998875 669999985
No 258
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=3.4 Score=44.02 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=89.4
Q ss_pred EecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCC-eeEEEeCCCCCEEEEeC--Cc----ceEEEEeeeccCCCCc
Q 044877 37 ASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSP-IRYVDVTYDGRWILGTT--DT----YLILICTLFTDKNGTT 109 (244)
Q Consensus 37 ats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdP-I~~vdvS~DG~~lLaT~--~~----~L~L~dt~~~~~~~~~ 109 (244)
..+..|.||.|+.+|.|-.++..-. .-.-+..+... |+.+-+..+-.+|.+.- .. +|++||-...++++
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln~s~~--~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~-- 106 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILNSSFQ--LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN-- 106 (933)
T ss_pred EcCCCceEEEeeccccEEEecccce--eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC--
Confidence 3345667999999999999997321 10123333344 66666655555665543 23 79999965543222
Q ss_pred ccccccccCCCCCcceeeeeCccchhhc-CCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCccccccc
Q 044877 110 KTGFNGRMGNKIAAPRLLKLTPLDSHLA-GVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECYQNQ 188 (244)
Q Consensus 110 ~~GF~~~~~~~kp~pr~L~L~Pe~~~~~-G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y~~~ 188 (244)
| |-++. ||..+. ..+.+-.|+-+=-+-.+ -..++++-++..|+-. =-+|++-+.
T Consensus 107 ------------s-P~c~~---~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~-~GDi~RDrg------ 161 (933)
T KOG2114|consen 107 ------------S-PQCLY---EHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICY-KGDILRDRG------ 161 (933)
T ss_pred ------------C-cceee---eeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEE-cCcchhccc------
Confidence 1 44442 111222 12344455544433222 4556666666665543 222332211
Q ss_pred cCCceeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCceeeeeeccc
Q 044877 189 EGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMKVSSFSISSR 242 (244)
Q Consensus 189 ~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~v~~~~~~~~ 242 (244)
+-..|. .+..|.|.. -.|.+++.+-+-|||++.|.+.++++|
T Consensus 162 ----sr~~~~-~~~~~pITg-------L~~~~d~~s~lFv~Tt~~V~~y~l~gr 203 (933)
T KOG2114|consen 162 ----SRQDYS-HRGKEPITG-------LALRSDGKSVLFVATTEQVMLYSLSGR 203 (933)
T ss_pred ----cceeee-ccCCCCcee-------eEEecCCceeEEEEecceeEEEEecCC
Confidence 122333 345566663 334444334489999999999999875
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.70 E-value=1.3 Score=47.94 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=44.7
Q ss_pred eEEEecCCCc-EE-EeCCCCcEEEEeccccccceec----------CC------------CCCCCeeEEEeCCCCCEEEE
Q 044877 34 QCFASTGDGS-IV-VGSLDGKIRLYSSNSMRQAKTA----------FP------------GLGSPIRYVDVTYDGRWILG 89 (244)
Q Consensus 34 t~vats~~G~-Ia-vGS~dG~IRLyD~~~~r~aKt~----------lp------------glGdPI~~vdvS~DG~~lLa 89 (244)
+.++++++|. |+ +-+.++.||.||..++. .... +- .+..| .+|++++||+.++|
T Consensus 743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~-~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~Gvavd~dG~LYVA 820 (1057)
T PLN02919 743 SGISLSPDLKELYIADSESSSIRALDLKTGG-SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LGVLCAKDGQIYVA 820 (1057)
T ss_pred cEEEEeCCCCEEEEEECCCCeEEEEECCCCc-EEEEEecccccCcccccccCCCCchhhhhccCC-ceeeEeCCCcEEEE
Confidence 4689999886 54 55667999999975432 1100 00 12234 48999999998778
Q ss_pred eCC-cceEEEEe
Q 044877 90 TTD-TYLILICT 100 (244)
Q Consensus 90 T~~-~~L~L~dt 100 (244)
... ..|+.||.
T Consensus 821 Ds~N~rIrviD~ 832 (1057)
T PLN02919 821 DSYNHKIKKLDP 832 (1057)
T ss_pred ECCCCEEEEEEC
Confidence 775 67999996
No 260
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=91.41 E-value=0.93 Score=43.08 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=52.3
Q ss_pred EEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCC-CCCEEEEeC-CcceEEEEeeeccCCCCcccccccccCCC
Q 044877 44 IVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTY-DGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMGNK 120 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~-DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~~~ 120 (244)
+++|+.||.++.||.+..+ ..-+-..-+..-|++|-=|| ++.+|...+ +..|++||++- -++--|....+
T Consensus 181 vytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn-----m~kPl~~~~v~-- 253 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN-----MGKPLFKAKVG-- 253 (339)
T ss_pred EEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc-----ccCccccCccc--
Confidence 8999999999999997221 11111123667899998885 566665444 78899999972 22222333222
Q ss_pred CCcceeeeeCccch
Q 044877 121 IAAPRLLKLTPLDS 134 (244)
Q Consensus 121 kp~pr~L~L~Pe~~ 134 (244)
..-=|++=+|++.
T Consensus 254 -GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 254 -GGVWRIKHHPEIF 266 (339)
T ss_pred -cceEEEEecchhh
Confidence 2235667778775
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=91.36 E-value=2 Score=41.77 Aligned_cols=154 Identities=18% Similarity=0.289 Sum_probs=94.3
Q ss_pred CCceecccccccC----CCCceeEEEecCCCc-EEEeCCCCcEEEEecccccc----ceecC----CC--------CCCC
Q 044877 16 APVLNWSQGHQFS----RGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQ----AKTAF----PG--------LGSP 74 (244)
Q Consensus 16 ~~~~~~~~~k~Y~----~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~----aKt~l----pg--------lGdP 74 (244)
..-+.|.++..+. .-...+||-++-.|. +|+|..+|.+-+|-...... -+|.+ |. .-.+
T Consensus 7 ~~~~~w~f~~~~~~~vteadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEK 86 (433)
T KOG1354|consen 7 NEILMWKFSQVFGLEVTEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEK 86 (433)
T ss_pred chhhhhhhhhhhcceechhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhh
Confidence 3467787776664 345589999999998 99999999999998753322 33444 22 2357
Q ss_pred eeEEEeCCCC---CEEEEeCCcceEEEEeeeccCCCCcccccccccCC---CCCcceeeeeCccchhh-------c--CC
Q 044877 75 IRYVDVTYDG---RWILGTTDTYLILICTLFTDKNGTTKTGFNGRMGN---KIAAPRLLKLTPLDSHL-------A--GV 139 (244)
Q Consensus 75 I~~vdvS~DG---~~lLaT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~---~kp~pr~L~L~Pe~~~~-------~--G~ 139 (244)
|.-|..-++| .|||+|.+.+|.||-.+-++. .+.||...... ..+.-|.-.++|-+..+ + .|
T Consensus 87 inkIrw~~~~n~a~FLlstNdktiKlWKi~er~~---k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 87 INKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGS---KKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhceecCCCCccEEEEecCCcceeeeeeecccc---ccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 7778777776 478899999999999876543 33445543221 11222333445544321 1 23
Q ss_pred ccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 140 NNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 140 ~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
+..-.+--+| ..+|+.+ .+-+=-+=.|+++.+=
T Consensus 164 tyhiNSIS~N-----sD~Et~l-SADdLRINLWnlei~d 196 (433)
T KOG1354|consen 164 TYHINSISVN-----SDKETFL-SADDLRINLWNLEIID 196 (433)
T ss_pred eeEeeeeeec-----CccceEe-eccceeeeeccccccC
Confidence 3222233444 2256655 4566677899998653
No 262
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.16 E-value=0.72 Score=42.98 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=49.0
Q ss_pred cEEEeCCCCcEEEEeccc--cccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877 43 SIVVGSLDGKIRLYSSNS--MRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT 100 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~--~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt 100 (244)
+||++|.||.+-+|.... ..--+|+|..+-+++-++..|.-|..|..++ ++.+.||--
T Consensus 225 ~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 225 TIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred eeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 599999999999998852 2234668888999999999999999998887 577999973
No 263
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=91.12 E-value=0.96 Score=45.79 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=61.1
Q ss_pred eCCCCcE----EEEecc---ccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcccccccccC
Q 044877 47 GSLDGKI----RLYSSN---SMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTKTGFNGRMG 118 (244)
Q Consensus 47 GS~dG~I----RLyD~~---~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~~GF~~~~~ 118 (244)
-|.+|++ .+|+.. -.+-+-|.+| ++.+|++.+.+|++++++..| +..|+|||....
T Consensus 228 ~s~~g~~~~d~ciYE~~r~klqrvsvtsip-L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------------- 291 (545)
T PF11768_consen 228 ISVKGEPSADSCIYECSRNKLQRVSVTSIP-LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG--------------- 291 (545)
T ss_pred cCCCCCceeEEEEEEeecCceeEEEEEEEe-cCCcceEEecCcccceEEEEecCCeEEEEEcCCC---------------
Confidence 3446654 345553 2234567777 999999999999999999999 577999997421
Q ss_pred CCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEec
Q 044877 119 NKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNF 174 (244)
Q Consensus 119 ~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~ 174 (244)
..... ...|-|.--+|.+ .+..++|+|.-.-+-.||.
T Consensus 292 ----~t~~~------------ka~~~P~~iaWHp---~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 292 ----VTLLA------------KAEFIPTLIAWHP---DGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ----eeeee------------eecccceEEEEcC---CCcEEEEEcCCceEEEEEe
Confidence 11111 1345566666754 2466777776666666664
No 264
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.07 E-value=1.4 Score=42.12 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=68.3
Q ss_pred EeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeC-Ccc-eEEEEeeeccCCCCcccccccccCCCCC
Q 044877 46 VGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTT-DTY-LILICTLFTDKNGTTKTGFNGRMGNKIA 122 (244)
Q Consensus 46 vGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp 122 (244)
=|-..|.|++=|....+. +--.++.|-.+|..|+++-+|..|++++ +.+ ||||||.-+..-.+.
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~------------- 220 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL------------- 220 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee-------------
Confidence 377789999999964432 3346789999999999999999886544 455 999999642211111
Q ss_pred cceeeeeCccchhhcCCc-cceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCc
Q 044877 123 APRLLKLTPLDSHLAGVN-NKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSH 182 (244)
Q Consensus 123 ~pr~L~L~Pe~~~~~G~~-~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~ 182 (244)
.-|-. ..-..--|+. ....+.|+|--.-+.++.++.-..+..
T Consensus 221 -------------RRG~d~A~iy~iaFSp-----~~s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 221 -------------RRGVDRADIYCIAFSP-----NSSWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred -------------ecCCchheEEEEEeCC-----CccEEEEEcCCCeEEEEEeecCCCCcc
Confidence 11211 1222335552 145566677777888888887554444
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.06 E-value=2.9 Score=40.23 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=66.9
Q ss_pred eEEEecCCCcEEEeCCCC--cEEEEeccccc--cceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEeeeccCCC
Q 044877 34 QCFASTGDGSIVVGSLDG--KIRLYSSNSMR--QAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTLFTDKNG 107 (244)
Q Consensus 34 t~vats~~G~IavGS~dG--~IRLyD~~~~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~~~~~~~ 107 (244)
-++-++|+|+++..-.-| .|.+||..-++ .+....-.=|.-=.||.|.|||++.-..|. +++..|.....
T Consensus 148 H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~---- 223 (346)
T COG2706 148 HSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA---- 223 (346)
T ss_pred ceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----
Confidence 367789999855555444 59999986332 111111123444589999999999988884 77999986421
Q ss_pred CcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEe
Q 044877 108 TTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWN 173 (244)
Q Consensus 108 ~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn 173 (244)
.. .=+.|| .+.-.|+.|. |.....-+-+++.|+|+++=|
T Consensus 224 ------~g-------~~~~lQ-----------~i~tlP~dF~---g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 224 ------VG-------KFEELQ-----------TIDTLPEDFT---GTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred ------Cc-------eEEEee-----------eeccCccccC---CCCceeEEEECCCCCEEEEec
Confidence 10 112333 1222244453 334456677889999999754
No 266
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=90.76 E-value=7.1 Score=36.66 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=38.3
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEeccccc-----cceecCCCCCCCeeEEEeCCC
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR-----QAKTAFPGLGSPIRYVDVTYD 83 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r-----~aKt~lpglGdPI~~vdvS~D 83 (244)
.+..-+|.|+++. +|.+...|.||+||..+.. -+......++++|-++.|..-
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~ 102 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEY 102 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeecc
Confidence 3456789999998 8999999999999997422 223222235688999877643
No 267
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=90.63 E-value=0.51 Score=48.02 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=46.6
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEE
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L 97 (244)
-..|+..++... |++|++|=.-++||..+. ..-+.- .+-.|||+|++.||.-|+ ..+-+++||
T Consensus 188 iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~S~-~~ey~ITSva~npd~~~~-v~S~nt~R~ 251 (737)
T KOG1524|consen 188 LVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFTSA-AEEYAITSVAFNPEKDYL-LWSYNTARF 251 (737)
T ss_pred EEEEeecCccccceeecCCceeEEeecccCc-ccccCC-hhccceeeeeecccccee-eeeeeeeee
Confidence 467888888655 999999999999999654 344433 377899999999994444 455555654
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=90.62 E-value=1.2 Score=41.85 Aligned_cols=57 Identities=26% Similarity=0.122 Sum_probs=40.3
Q ss_pred eEEEecCCCc-EE-EeCCCC--cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877 34 QCFASTGDGS-IV-VGSLDG--KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 34 t~vats~~G~-Ia-vGS~dG--~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~ 92 (244)
.+.+.+|+|. || +.+.+| +|.+||..+++ .+ .|-......++..+||||++|+.++.
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~-~lt~~~~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LS-RVTNHPAIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eE-EcccCCCCcCCeEECCCCCEEEEEEC
Confidence 3678999997 65 556666 58888987654 33 23334445677899999999987764
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.38 E-value=1.3 Score=42.76 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=40.8
Q ss_pred eEEEecCCCc-EE-EeCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877 34 QCFASTGDGS-IV-VGSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 34 t~vats~~G~-Ia-vGS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~ 92 (244)
.+.+.+|+|. || +.+.+|. |.+||..+++ .+ .+......+...++||||++|+.++.
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~-~lt~~~~~~~~p~wSpDG~~I~f~s~ 325 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LT-RITRHRAIDTEPSWHPDGKSLIFTSE 325 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eE-ECccCCCCccceEECCCCCEEEEEEC
Confidence 3678999998 65 4677775 7777876653 33 34444456688899999999987764
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=90.18 E-value=0.99 Score=43.46 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=44.8
Q ss_pred eEEEecCCCc-EEEeC-CCCcEEEEecc--c-cccceecCCCCCCCeeEEEeCCCCCEEEEeCC----cceEEEEe
Q 044877 34 QCFASTGDGS-IVVGS-LDGKIRLYSSN--S-MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD----TYLILICT 100 (244)
Q Consensus 34 t~vats~~G~-IavGS-~dG~IRLyD~~--~-~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~----~~L~L~dt 100 (244)
+..+.+|+|. ||..| .+|..+||... . ....+ .+...+..+....+||||++|+.++. ..|.+||.
T Consensus 284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~-~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl 358 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR-LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDL 358 (428)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEEC
Confidence 4678999998 76655 57877777532 1 11122 34445567888999999999987653 23778775
No 271
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=90.13 E-value=2.1 Score=42.48 Aligned_cols=119 Identities=13% Similarity=0.037 Sum_probs=78.4
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCC---CeeEEEeCCCCCEEEEeCC-cceEEEEeeecc
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGS---PIRYVDVTYDGRWILGTTD-TYLILICTLFTD 104 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGd---PI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~ 104 (244)
..++-|++++.... +++|..+|.|-+-|..+..... .-.+.+ .|-|++++|-...+++.++ .-+.+||.+-.
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~- 181 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR- 181 (609)
T ss_pred ccceEEEEEccCCeeEecCCCcceeEeeecccceeee--eecccCcccceeecccCCCCceEEEEecCceEEEEeccCC-
Confidence 34677899988655 9999999999999996543221 123444 8999999987666666665 77999997531
Q ss_pred CCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhh
Q 044877 105 KNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 105 ~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
|.|.-|- -.++-+-+|..+-|+..+ -.-+.+++.-.=+=+||.++-.
T Consensus 182 -----------------~~~~~~~------~~AN~~~~F~t~~F~P~~----P~Li~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 182 -----------------QNPISLV------LPANSGKNFYTAEFHPET----PALILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred -----------------CCCCcee------eecCCCccceeeeecCCC----ceeEEeccccCCCCceeecccc
Confidence 3232222 223345689999999432 3445555655566788877643
No 272
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=90.08 E-value=0.25 Score=52.29 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=59.5
Q ss_pred ceeccccccc------CCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe
Q 044877 18 VLNWSQGHQF------SRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT 90 (244)
Q Consensus 18 ~~~~~~~k~Y------~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT 90 (244)
|.-|+-...| ......+-.|.+.+-- ||++|.|-.||+|-+..+. --..|-||-..||+|++||=- ++
T Consensus 214 vKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-pvsvLrghtgavtaiafsP~~----ss 288 (1113)
T KOG0644|consen 214 VKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-PVSVLRGHTGAVTAIAFSPRA----SS 288 (1113)
T ss_pred eeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc-hHHHHhccccceeeeccCccc----cC
Confidence 5556544333 2334567777777644 9999999999999998763 344678999999999999965 56
Q ss_pred C-CcceEEEEee
Q 044877 91 T-DTYLILICTL 101 (244)
Q Consensus 91 ~-~~~L~L~dt~ 101 (244)
. +.++++||..
T Consensus 289 s~dgt~~~wd~r 300 (1113)
T KOG0644|consen 289 SDDGTCRIWDAR 300 (1113)
T ss_pred CCCCceEecccc
Confidence 5 4889999987
No 273
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=0.65 Score=50.00 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=52.5
Q ss_pred CceeEEEecCCCc--EEEeCCCCc---EEEEeccccc-cceecCCCCCCCeeEEEeCCCC-CEEE-EeCCcceEEEEee
Q 044877 31 TNFQCFASTGDGS--IVVGSLDGK---IRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDG-RWIL-GTTDTYLILICTL 101 (244)
Q Consensus 31 ~~Ft~vats~~G~--IavGS~dG~---IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG-~~lL-aT~~~~L~L~dt~ 101 (244)
...+.++.+|++. |+++|.|-. |.|||.+.-. =.|+ +.+|.--|++|+..+.+ ++|| +.+++.++.|+..
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~-~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI-LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh-hcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 6688999999875 888888764 9999985321 1242 46888999999999777 5555 2346889999974
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=89.73 E-value=1.4 Score=42.38 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=44.8
Q ss_pred eeEEEecCCCc-EEEeCC-C--CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-C---cceEEEEe
Q 044877 33 FQCFASTGDGS-IVVGSL-D--GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-D---TYLILICT 100 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~-d--G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~---~~L~L~dt 100 (244)
..+.+.+|+|. ||..+. + ..|.+||..+++. +.+..+ ...+.+..+||||++|+.+. . ..|.+||.
T Consensus 329 ~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 329 SSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 46788999998 665544 3 3699999977643 322222 33577899999999998553 2 33777775
No 275
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.28 E-value=9.2 Score=38.88 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=78.5
Q ss_pred ccccCCCCceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeee
Q 044877 24 GHQFSRGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLF 102 (244)
Q Consensus 24 ~k~Y~~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~ 102 (244)
++-|.. ..|+-.+. -|+|++++.|+.+-+|+....+ ...-...-..-+.++++||||+-++. .-..|.+||+.-
T Consensus 99 ~~h~~~---v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~-as~~ik~~~~~~ 173 (541)
T KOG4547|consen 99 DKHYGN---VNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLT-ASRQIKVLDIET 173 (541)
T ss_pred CCCCCc---ceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEe-ccceEEEEEccC
Confidence 445544 44565444 7789999999999999997554 22223445567899999999998754 446689999742
Q ss_pred ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCc-----cceeeeeeeeecCCCCcceEEE-EeeCCeEEEEechh
Q 044877 103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVN-----NKFHKAQFSWVTENGKQERHLV-ATVGKFSVIWNFQQ 176 (244)
Q Consensus 103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~-----~~Ft~akFn~~tg~~~~E~~Iv-tStG~fvvvWn~~k 176 (244)
...++ ++.||. +.|+-. |+ +..++.+.. +-.+..+.+|=.++
T Consensus 174 ---------------------kevv~------~ftgh~s~v~t~~f~~~-~~----g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 174 ---------------------KEVVI------TFTGHGSPVRTLSFTTL-ID----GIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ---------------------ceEEE------EecCCCcceEEEEEEEe-cc----ccccceeeeccccccceeEEEEEc
Confidence 23555 677764 345433 32 122455554 34567778887766
Q ss_pred -hhcCCc
Q 044877 177 -VKNGSH 182 (244)
Q Consensus 177 -V~~g~~ 182 (244)
.+.+..
T Consensus 222 ~~kkks~ 228 (541)
T KOG4547|consen 222 EDKKKSL 228 (541)
T ss_pred ccccchh
Confidence 554444
No 276
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=88.98 E-value=0.89 Score=47.74 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=44.5
Q ss_pred cEEEeCCCCcEEEEeccccc-----------cceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877 43 SIVVGSLDGKIRLYSSNSMR-----------QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL 101 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r-----------~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~ 101 (244)
..+++|.||.+|+|-..... .+-.+ -+.-||+..++|.||..|.+..++.|.+||..
T Consensus 471 ~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s--y~k~~i~a~~fs~dGslla~s~~~~Itiwd~~ 538 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS--YHKTPITALCFSQDGSLLAVSFDDTITIWDYD 538 (792)
T ss_pred eeEEeccCCeEEEEEEecccccCcCccceEEeeeec--cccCcccchhhcCCCcEEEEecCCEEEEecCC
Confidence 37899999999999873211 12222 25679999999999998888889999999964
No 277
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.73 E-value=1.3 Score=46.35 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=54.7
Q ss_pred eeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeee
Q 044877 33 FQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLF 102 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~ 102 (244)
.--+|+-|+|.=.+=..+..+-+||...+.... .|.||.|.|-.|+.|.||+...+.. ++.+.+|..+.
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llq-tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl 84 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQ-PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL 84 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCccccc-ccccccceEEEEEEccCCceeccCCCceeEEEecccc
Confidence 445789999982222345689999997766555 5799999999999999999998776 68899998764
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.54 E-value=0.65 Score=47.62 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=50.7
Q ss_pred EecCCCcEEEeCCCCcEEEEecccc---c---cceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeee
Q 044877 37 ASTGDGSIVVGSLDGKIRLYSSNSM---R---QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLF 102 (244)
Q Consensus 37 ats~~G~IavGS~dG~IRLyD~~~~---r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~ 102 (244)
|.+.+...+++|.|.+++||..+.. + ..+-+...|.-||.+|-+-.|-++| +.|+..|.|||-.+
T Consensus 743 AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~ScD~giHlWDPFi 813 (1034)
T KOG4190|consen 743 AIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-ASCDGGIHLWDPFI 813 (1034)
T ss_pred hcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-eeccCcceeecccc
Confidence 3444546999999999999998621 1 1222346788999999999999998 88999999999755
No 279
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=87.98 E-value=0.6 Score=36.43 Aligned_cols=46 Identities=20% Similarity=0.359 Sum_probs=34.0
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~ 91 (244)
+.-|..+|.+--||..++ ..+.++.+|.-| .+|++|+||.+||.+=
T Consensus 30 ~le~~~~GRll~ydp~t~-~~~vl~~~L~fp-NGVals~d~~~vlv~E 75 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTK-ETTVLLDGLYFP-NGVALSPDESFVLVAE 75 (89)
T ss_dssp HHHT---EEEEEEETTTT-EEEEEEEEESSE-EEEEE-TTSSEEEEEE
T ss_pred eecCCCCcCEEEEECCCC-eEEEehhCCCcc-CeEEEcCCCCEEEEEe
Confidence 344666899999999886 477788888866 8999999999998663
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.75 E-value=17 Score=31.35 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCCceeEEEecCCCcEEEeCCC---------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC-cceEE
Q 044877 29 RGTNFQCFASTGDGSIVVGSLD---------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD-TYLIL 97 (244)
Q Consensus 29 ~~~~Ft~vats~~G~IavGS~d---------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~~L~L 97 (244)
..+.+.-++++++|.|.+++.. |.|-.++.. + .++....++.-| .+|+++|||++|..+ +. ..|.-
T Consensus 84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~-~~~~~~~~~~~p-NGi~~s~dg~~lyv~ds~~~~i~~ 160 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G-KVTVVADGLGFP-NGIAFSPDGKTLYVADSFNGRIWR 160 (246)
T ss_dssp CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S-EEEEEEEEESSE-EEEEEETTSSEEEEEETTTTEEEE
T ss_pred ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C-eEEEEecCcccc-cceEECCcchheeecccccceeEE
Confidence 3455778999999998887654 456666664 2 344444555443 799999999988644 43 55666
Q ss_pred EEe
Q 044877 98 ICT 100 (244)
Q Consensus 98 ~dt 100 (244)
+|.
T Consensus 161 ~~~ 163 (246)
T PF08450_consen 161 FDL 163 (246)
T ss_dssp EEE
T ss_pred Eec
Confidence 664
No 281
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=87.36 E-value=3.3 Score=39.90 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=56.4
Q ss_pred eecccccccCCCCceeEEEecCCCc-EEEeCCC----------C-cEEEEeccccccceecCCCCCCCeeEEEeCCCCCE
Q 044877 19 LNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLD----------G-KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRW 86 (244)
Q Consensus 19 ~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~d----------G-~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~ 86 (244)
+.|....++.. ..+|.++.|- ||+-..+ - .|++|+..+..-.+..++. ++|.++.++.+.+.
T Consensus 21 m~W~~~~~l~~----~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~--~~iv~~~wt~~e~L 94 (410)
T PF04841_consen 21 MSWSLKDDLSD----YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS--GRIVGMGWTDDEEL 94 (410)
T ss_pred CCCCccccccc----eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECC--CCEEEEEECCCCeE
Confidence 56766544321 3456677544 7777555 2 5999999876666656665 89999999999999
Q ss_pred EEEeCCcceEEEEe
Q 044877 87 ILGTTDTYLILICT 100 (244)
Q Consensus 87 lLaT~~~~L~L~dt 100 (244)
|+.+.+..++++|.
T Consensus 95 vvV~~dG~v~vy~~ 108 (410)
T PF04841_consen 95 VVVQSDGTVRVYDL 108 (410)
T ss_pred EEEEcCCEEEEEeC
Confidence 99999999999986
No 282
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=86.96 E-value=1.9 Score=43.81 Aligned_cols=74 Identities=7% Similarity=0.013 Sum_probs=52.1
Q ss_pred cCCCCc-eeEEEecCCC--cEEEeCCCCcEEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877 27 FSRGTN-FQCFASTGDG--SIVVGSLDGKIRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT 100 (244)
Q Consensus 27 Y~~~~~-Ft~vats~~G--~IavGS~dG~IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt 100 (244)
|.+... .+++|.||.= -+|++..||.|-+||++.... .-...+-...+...+.++++|+.|.+.-. ..+.+++.
T Consensus 437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 333444 8999999943 289999999999999963221 11123323556667778888999987765 66999886
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=86.83 E-value=0.84 Score=43.38 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=46.8
Q ss_pred eeEEEecC-CCc-EEEeCCCCcEEEEeccccccceecCC-CCCCCeeEEEeCCCC-CEEEEeCC-cceEEEEee
Q 044877 33 FQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQAKTAFP-GLGSPIRYVDVTYDG-RWILGTTD-TYLILICTL 101 (244)
Q Consensus 33 Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~aKt~lp-glGdPI~~vdvS~DG-~~lLaT~~-~~L~L~dt~ 101 (244)
+.|+-.++ .++ ||+||.|-.||+||.+++ .|-+++ .+|.-|--|.-+|-- .-||+.|+ +...+.+..
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm--~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNM--GKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcc--cCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 45777777 555 999999999999999754 343444 356666666655533 34568887 778888864
No 284
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=86.37 E-value=2.9 Score=39.56 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=51.7
Q ss_pred eEEEecCCCc-EEEeCC---CCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEeC--CcceEEEEee
Q 044877 34 QCFASTGDGS-IVVGSL---DGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGTT--DTYLILICTL 101 (244)
Q Consensus 34 t~vats~~G~-IavGS~---dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT~--~~~L~L~dt~ 101 (244)
..++.+++|. ++++.. ++.|-..|..+.+..++ .| .| .| .+++++|||+.+..+. .+.|.++|+.
T Consensus 119 ~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~ 190 (381)
T COG3391 119 VGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS 190 (381)
T ss_pred ceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee-cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence 4677888774 877777 78999999988776776 55 44 58 9999999999888665 5889999954
No 285
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=86.31 E-value=1.3 Score=27.58 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=19.0
Q ss_pred CCCeeEEEeCCCCCEEE-EeCCcceEEE
Q 044877 72 GSPIRYVDVTYDGRWIL-GTTDTYLILI 98 (244)
Q Consensus 72 GdPI~~vdvS~DG~~lL-aT~~~~L~L~ 98 (244)
|..|++|+.++. |+. +|+..|||++
T Consensus 1 gE~i~aia~g~~--~vavaTS~~~lRif 26 (27)
T PF12341_consen 1 GEEIEAIAAGDS--WVAVATSAGYLRIF 26 (27)
T ss_pred CceEEEEEccCC--EEEEEeCCCeEEec
Confidence 567888888865 777 4556999986
No 286
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=86.25 E-value=1.6 Score=46.75 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=53.1
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcc-eEEEEeeeccCCCCcccccccc
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTY-LILICTLFTDKNGTTKTGFNGR 116 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~-L~L~dt~~~~~~~~~~~GF~~~ 116 (244)
||.|+.=|.|-.|+...-+..- .+-||-..|-+|..|-||+++++-++++ +|||+.-- .+--+..||-.+
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s--~~~~~~~~fgHs 218 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS--REVLGCTGFGHS 218 (967)
T ss_pred EEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeeccc--ccccCccccccc
Confidence 9999999999999986322222 3678999999999999999998888755 99998632 332234667654
No 287
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=86.14 E-value=2.3 Score=44.67 Aligned_cols=89 Identities=21% Similarity=0.329 Sum_probs=66.3
Q ss_pred cceeeecccCCCceecccccccC----------C--CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCC
Q 044877 6 GIVQNLANAGAPVLNWSQGHQFS----------R--GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLG 72 (244)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~k~Y~----------~--~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglG 72 (244)
|++-.++ |.+|.|.-.|- + +.+=-|+..-++|. +.+|+.||-+.+|.+.+.+ .-| +-...
T Consensus 191 G~~di~a-----V~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr-LGT-vg~~D 263 (1081)
T KOG1538|consen 191 GRNDILA-----VADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVR-LGT-VGEQD 263 (1081)
T ss_pred CccceEE-----EEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeE-Eee-ccccc
Confidence 5555665 78898854431 1 22335777788997 9999999999999998775 333 33466
Q ss_pred CCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 73 SPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 73 dPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
.=|..|.+-|+|+++...|. .+|--++..
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 78999999999999999995 778766643
No 288
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=85.03 E-value=2.8 Score=44.97 Aligned_cols=65 Identities=18% Similarity=0.082 Sum_probs=49.3
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEE
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILIC 99 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~d 99 (244)
.-++.++.+|. ||+-|.|-.||+|+.-+.+..--..-||-..|-.+.+.|+ .|++.. +-++++|+
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEe
Confidence 34677888887 9999999999999997665433223356678899999999 555555 57799994
No 289
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=84.78 E-value=6.5 Score=40.66 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=67.6
Q ss_pred CccccceeeecccCCCceeccccccc---------------CCCCc-eeEEEecCCCc-EEEeCCCCcEEEEecccc-cc
Q 044877 2 RDKNGIVQNLANAGAPVLNWSQGHQF---------------SRGTN-FQCFASTGDGS-IVVGSLDGKIRLYSSNSM-RQ 63 (244)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~k~Y---------------~~~~~-Ft~vats~~G~-IavGS~dG~IRLyD~~~~-r~ 63 (244)
|-++|.||...+-.+...-......| .++-. ++++++++.|. |++||.|+.+-+||.--. +-
T Consensus 563 ~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 563 RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence 56789999887633322222222222 23333 78999999997 999999999999998422 22
Q ss_pred ceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeee
Q 044877 64 AKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLF 102 (244)
Q Consensus 64 aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~ 102 (244)
-| .|--|-..|++|++.+-=-.+.+.++ +++.++...+
T Consensus 643 yk-~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 643 YK-TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred hH-HhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 34 35568889999999876665655565 6677777654
No 290
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.34 E-value=2.1 Score=45.67 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=53.7
Q ss_pred cccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877 25 HQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILIC 99 (244)
Q Consensus 25 k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~d 99 (244)
.+|++..-.+++.++|.|+ ++.|+.||.|+||.-...++.|. =...-|=..+.+|.-|-+. +|++...+-|-
T Consensus 9 ~~~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski--~~~~~p~~nlv~tnhgl~~-~tsdrr~la~~ 81 (1636)
T KOG3616|consen 9 RDPKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKI--CEEAKPKENLVFTNHGLVT-ATSDRRALAWK 81 (1636)
T ss_pred CCccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhh--hhhcCCccceeeeccceEE-Eeccchhheee
Confidence 4566666678999999998 99999999999999876665552 2355677778888877654 77776666664
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=83.17 E-value=14 Score=39.68 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=52.3
Q ss_pred eEEEecCCCc-EEEeCC---CCcEEEEeccccccceecCC--CCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877 34 QCFASTGDGS-IVVGSL---DGKIRLYSSNSMRQAKTAFP--GLGSPIRYVDVTYDGRWILGTTDTYLILICT 100 (244)
Q Consensus 34 t~vats~~G~-IavGS~---dG~IRLyD~~~~r~aKt~lp--glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt 100 (244)
.+++.-|.|. ||+... +-+|-.|-+.+.|...=.|| .-+..|..|..++|+.-|+..+.+.|.||-+
T Consensus 260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~ 332 (928)
T PF04762_consen 260 GALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTR 332 (928)
T ss_pred CCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEe
Confidence 3788889998 444433 47788999877776654455 4577999999999999998888888999986
No 292
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.92 E-value=2.4 Score=44.71 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=37.2
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCC
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYD 83 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~D 83 (244)
|..=+.+.+|. +|++|.||.|-+....+.+ -.|.+. ++-||.+|+++||
T Consensus 74 ~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~d-f~rpiksial~Pd 123 (846)
T KOG2066|consen 74 FDHSSSILEGEYVASCSDDGKVVIGSLFTDD-EITQYD-FKRPIKSIALHPD 123 (846)
T ss_pred ccccccccCCceEEEecCCCcEEEeeccCCc-cceeEe-cCCcceeEEeccc
Confidence 33333355676 9999999999998887765 333344 8999999999999
No 293
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=82.90 E-value=3 Score=40.53 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=44.3
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL 101 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~ 101 (244)
|-+.+.||.|.+||..... =...++.-.+++.+++.|||||.||-|+. -.|.+|...
T Consensus 64 lC~~yk~~~vqvwsl~Qpe-w~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~ 122 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPE-WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN 122 (447)
T ss_pred eeeeeccceEEEEEeecce-eEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec
Confidence 6677889999999996443 22235656689999999999999999985 558888753
No 294
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=82.75 E-value=2.2 Score=43.69 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=48.4
Q ss_pred CCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeee
Q 044877 41 DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLF 102 (244)
Q Consensus 41 ~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~ 102 (244)
.|. |++||.||.--+|+..+++..+ .++|...-+..|.-.|+--.| ||+ +++|.||...-
T Consensus 635 rgeyiasgSddgr~fiwek~tg~i~a-v~~gdssivnciqghP~~~~l-atSgiDstiKIwsp~a 697 (758)
T KOG1310|consen 635 RGEYIASGSDDGRFFIWEKLTGSILA-VIHGDSSIVNCIQGHPRCPTL-ATSGIDSTIKIWSPEA 697 (758)
T ss_pred CCCeeeEecCCCceEEeecCCcceEE-EeeCchhheeeccCCCCCcee-eeccCccceEEecccC
Confidence 444 9999999999999999887444 678888888888888887544 776 68899999654
No 295
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=82.64 E-value=2 Score=39.92 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=39.7
Q ss_pred CCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877 48 SLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT 100 (244)
Q Consensus 48 S~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt 100 (244)
|..+++-+||..+++ ++.+.+ ...++....+||||++|+-...+-|-+++.
T Consensus 20 s~~~~y~i~d~~~~~-~~~l~~-~~~~~~~~~~sP~g~~~~~v~~~nly~~~~ 70 (353)
T PF00930_consen 20 SFKGDYYIYDIETGE-ITPLTP-PPPKLQDAKWSPDGKYIAFVRDNNLYLRDL 70 (353)
T ss_dssp EEEEEEEEEETTTTE-EEESS--EETTBSEEEE-SSSTEEEEEETTEEEEESS
T ss_pred ccceeEEEEecCCCc-eEECcC-CccccccceeecCCCeeEEEecCceEEEEC
Confidence 557889999998764 443333 378999999999999999988888999873
No 296
>PRK04043 tolB translocation protein TolB; Provisional
Probab=81.79 E-value=8.3 Score=37.28 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=47.4
Q ss_pred cCCCCceeEEEecCCCc--EEEeCCC---CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC----cceEE
Q 044877 27 FSRGTNFQCFASTGDGS--IVVGSLD---GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD----TYLIL 97 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~--IavGS~d---G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~----~~L~L 97 (244)
+.+...-.....+|+|+ ++..|.+ ..|.++|..+++.-+ |-.........++||||++|+.+.. .-|-+
T Consensus 184 ~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 261 (419)
T PRK04043 184 IVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYL 261 (419)
T ss_pred EccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEE
Confidence 33333456788999996 6655554 469999987764332 2224455667889999999986542 23777
Q ss_pred EEe
Q 044877 98 ICT 100 (244)
Q Consensus 98 ~dt 100 (244)
+|.
T Consensus 262 ~dl 264 (419)
T PRK04043 262 YDT 264 (419)
T ss_pred EEC
Confidence 774
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=81.76 E-value=12 Score=35.57 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=47.4
Q ss_pred EEEecCCC-cEEEeCCCCcEEEEeccccc-----cceecCCCCCCCeeEEEeCCCCCE--EEEeC-CcceEEEEee
Q 044877 35 CFASTGDG-SIVVGSLDGKIRLYSSNSMR-----QAKTAFPGLGSPIRYVDVTYDGRW--ILGTT-DTYLILICTL 101 (244)
Q Consensus 35 ~vats~~G-~IavGS~dG~IRLyD~~~~r-----~aKt~lpglGdPI~~vdvS~DG~~--lLaT~-~~~L~L~dt~ 101 (244)
|...++.. ..|+|+.||.+-+||.+.++ ..+ .-|.+...|....+|+-|-. |+-+- -.++.+.|++
T Consensus 208 ~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 208 YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred eeeeccCcceEEEEecCCcEEEEEecccccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 56666644 49999999999999997544 223 24778899999999965532 22333 4888888875
No 298
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=81.68 E-value=5.3 Score=36.63 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=63.4
Q ss_pred cEEEeCCCCcEEEEeccccccceecCCCCCCCee-EEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCC
Q 044877 43 SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIR-YVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNK 120 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~-~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~ 120 (244)
.+++|+.+|.|.+|-.-..-..--..+..-.+|. .|...-|+.+.++.|. +.|+.|++.+. + .+||.
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--k---~~g~~------ 140 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--K---VLGYV------ 140 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC--c---eeeee------
Confidence 5999999999999987421111112233334443 3455567777777775 66999998651 1 12222
Q ss_pred CCcceeeeeCccchhhcCCccceeee-eeeeecCCCCcceEEEE--eeCCeEEEEechhhhcCCcccc
Q 044877 121 IAAPRLLKLTPLDSHLAGVNNKFHKA-QFSWVTENGKQERHLVA--TVGKFSVIWNFQQVKNGSHECY 185 (244)
Q Consensus 121 kp~pr~L~L~Pe~~~~~G~~~~Ft~a-kFn~~tg~~~~E~~Ivt--StG~fvvvWn~~kV~~g~~~~y 185 (244)
| .++|.+. .+-.+ +..|-+.++ |.+.-+=-||+++++......|
T Consensus 141 -----------------g-~h~~~~~e~~ivv---~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~i~~ 187 (238)
T KOG2444|consen 141 -----------------G-QHNFESGEELIVV---GSDEFLKIADTSHDRVLKKWNVEKIKDESPISS 187 (238)
T ss_pred -----------------c-cccCCCcceeEEe---cCCceEEeeccccchhhhhcchhhhhccCcchh
Confidence 1 2344332 11111 223555555 6666666678999988877655
No 299
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.90 E-value=29 Score=38.56 Aligned_cols=156 Identities=17% Similarity=0.221 Sum_probs=91.1
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeCCcceEEEEee---ec---
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTTDTYLILICTL---FT--- 103 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~~~~L~L~dt~---~~--- 103 (244)
...++.+-.++. |.++...|+|-|-|..+.. -...--.-.-|..++.|||++|++ +|...+|+++... |-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 577778777776 9999999999999885432 111223567899999999999998 5556777765541 10
Q ss_pred -cCCCCc-----cccccc---ccC--CCCCcceeeeeCccchhhcC-CccceeeeeeeeecCCCCcceEEE----EeeC-
Q 044877 104 -DKNGTT-----KTGFNG---RMG--NKIAAPRLLKLTPLDSHLAG-VNNKFHKAQFSWVTENGKQERHLV----ATVG- 166 (244)
Q Consensus 104 -~~~~~~-----~~GF~~---~~~--~~kp~pr~L~L~Pe~~~~~G-~~~~Ft~akFn~~tg~~~~E~~Iv----tStG- 166 (244)
+.+..+ +-||-+ -|. .-+.++|--. ++....+ ....=.+..-+| .|+ +|.+.| .-+|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~---~~ek~~~~~~~~~~~~~IsW-RgD--g~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKI---EKEKALEQIEQDDHKTSISW-RGD--GEYFAVSFVESETGT 221 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccc---cccccccchhhccCCceEEE-ccC--CcEEEEEEEeccCCc
Confidence 111111 123333 121 1111111111 1112222 112222445678 444 677666 2456
Q ss_pred CeEEEEechhhhcCCccccccccCCceeeeeE
Q 044877 167 KFSVIWNFQQVKNGSHECYQNQEGLKSCYCYK 198 (244)
Q Consensus 167 ~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~ 198 (244)
+-+-+||=+-.|+..-++ ++|+..|..++
T Consensus 222 RkirV~drEg~Lns~se~---~~~l~~~LsWk 250 (1265)
T KOG1920|consen 222 RKIRVYDREGALNSTSEP---VEGLQHSLSWK 250 (1265)
T ss_pred eeEEEecccchhhcccCc---ccccccceeec
Confidence 899999999888877664 46777776653
No 300
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=79.69 E-value=1.6 Score=49.84 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=43.3
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~ 101 (244)
-||+++-|.-+ +.+|+.+|+|.|||.+. |+.+.+++. ++ ...-++...+..+|+||+..
T Consensus 2339 aT~l~~~P~~qllisggr~G~v~l~D~rq-rql~h~~~~-------~~--~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2339 ATVLAYAPKHQLLISGGRKGEVCLFDIRQ-RQLRHTFQA-------LD--TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred ceEEEEcCcceEEEecCCcCcEEEeehHH-HHHHHHhhh-------hh--hhheeeccCcccceEEEEcc
Confidence 58999999766 99999999999999953 234444553 33 44445556668999999974
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=79.52 E-value=14 Score=35.87 Aligned_cols=143 Identities=17% Similarity=0.306 Sum_probs=85.5
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccc--e--ecCCCC------------CC---CeeEEEeCCCCCEEEE
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQA--K--TAFPGL------------GS---PIRYVDVTYDGRWILG 89 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~a--K--t~lpgl------------Gd---PI~~vdvS~DG~~lLa 89 (244)
....|+|-+...|. +|+|..-|.|-||-....+-. | |-+.++ .. .|.-.+-+.-..+||+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 45689999999986 999999999999987533200 1 112222 12 3444455666679999
Q ss_pred eCCcceEEEEeeeccC----CCCcccccccccCCCCCcceee---eeCccchhh--------cC-CccceeeeeeeeecC
Q 044877 90 TTDTYLILICTLFTDK----NGTTKTGFNGRMGNKIAAPRLL---KLTPLDSHL--------AG-VNNKFHKAQFSWVTE 153 (244)
Q Consensus 90 T~~~~L~L~dt~~~~~----~~~~~~GF~~~~~~~kp~pr~L---~L~Pe~~~~--------~G-~~~~Ft~akFn~~tg 153 (244)
|.+.+|.||-..-++- .|.-..||...|+..--.|..| +|..+|... .. |+....+--||
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N---- 181 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN---- 181 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec----
Confidence 9999999999876642 3556677887776322222222 233333211 11 23222333555
Q ss_pred CCCcceEEEEeeCCeEEEEechhhh
Q 044877 154 NGKQERHLVATVGKFSVIWNFQQVK 178 (244)
Q Consensus 154 ~~~~E~~IvtStG~fvvvWn~~kV~ 178 (244)
..+|+. ..+-+=-+=.||++.+-
T Consensus 182 -sD~et~-lSaDdLrINLWnl~i~D 204 (460)
T COG5170 182 -SDKETL-LSADDLRINLWNLEIID 204 (460)
T ss_pred -Cchhee-eeccceeeeeccccccC
Confidence 124554 45566777889987653
No 302
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=78.98 E-value=2.1 Score=46.01 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=65.7
Q ss_pred eeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeeccCCCCcc
Q 044877 33 FQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTDKNGTTK 110 (244)
Q Consensus 33 Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~~~~~~~ 110 (244)
.++++.+|.-- +|.|=.-|+|-+|-..+.+ .-|.-..+..||+.+++|+||..+++.- +..+.||..-.. +..++.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e-~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~-g~~q~~ 139 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE-THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI-GEIQTS 139 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce-eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec-cccccc
Confidence 45677778644 8999999999999986544 3333445899999999999999998664 588999986543 444444
Q ss_pred cccccccCCCCCcceeeeeCcc
Q 044877 111 TGFNGRMGNKIAAPRLLKLTPL 132 (244)
Q Consensus 111 ~GF~~~~~~~kp~pr~L~L~Pe 132 (244)
+=|..-+++. -.--+.+|.|+
T Consensus 140 ~~~~hel~~~-ltl~cfRL~~~ 160 (1416)
T KOG3617|consen 140 NIMQHELNDQ-LTLWCFRLSYD 160 (1416)
T ss_pred hhhhhHhhce-eeEEEEecCCC
Confidence 4444433322 22344455554
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=78.91 E-value=3.4 Score=38.03 Aligned_cols=56 Identities=23% Similarity=0.250 Sum_probs=40.3
Q ss_pred CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEE
Q 044877 41 DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97 (244)
Q Consensus 41 ~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L 97 (244)
++.|++++.+|.|+++|..+++..- .++-.+.++.+--+..|++.++++.+.+|.-
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~-~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~ 375 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVA-RLKTDGSGIASPPVVVGDGLLVQTRDGDLYA 375 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEE-EEEcCCCccccCCEEECCEEEEEeCCceEEE
Confidence 4579999999999999997765433 3454444666666667888777777777654
No 304
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.90 E-value=7.3 Score=33.69 Aligned_cols=57 Identities=19% Similarity=0.236 Sum_probs=41.6
Q ss_pred eeEEEecCCCcEEEeC-CCCcEEEEeccccccceecCCCCCCCeeEEEe-CCCCCEEEEeC
Q 044877 33 FQCFASTGDGSIVVGS-LDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDV-TYDGRWILGTT 91 (244)
Q Consensus 33 Ft~vats~~G~IavGS-~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdv-S~DG~~lLaT~ 91 (244)
--.++++++|+|.++. ..|.|..||..+.....-.+| ...+++++| -+|.+.|..|+
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEEEEEe
Confidence 4579999999977665 589999999975433344455 358999999 48888888775
No 305
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.85 E-value=10 Score=35.59 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=42.8
Q ss_pred eeEEEecCCCcEEEeCC------------CC-cEEEEeccc--cc--cceecCCCCCCCeeEEEeCCCCCEEEEeCCcce
Q 044877 33 FQCFASTGDGSIVVGSL------------DG-KIRLYSSNS--MR--QAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYL 95 (244)
Q Consensus 33 Ft~vats~~G~IavGS~------------dG-~IRLyD~~~--~r--~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L 95 (244)
-.+++.+++|.|.++.. .| .|.+++-.. ++ ..+.+..++..| .+|++.+|| |++++...|
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p-~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMV-TGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCc-cceeEecCC--EEEeCCCeE
Confidence 36899999999888853 34 787776542 21 224445666654 889999999 556676666
Q ss_pred EEE
Q 044877 96 ILI 98 (244)
Q Consensus 96 ~L~ 98 (244)
..+
T Consensus 93 ~~~ 95 (367)
T TIGR02604 93 LFL 95 (367)
T ss_pred EEE
Confidence 544
No 306
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=78.61 E-value=21 Score=34.56 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=58.3
Q ss_pred CCceeEEEecCCCc-EEEeCC-CCcEEEEeccc-cc------cceecCCC----CCCC-eeEEEeCCCCCEEEEeCC--c
Q 044877 30 GTNFQCFASTGDGS-IVVGSL-DGKIRLYSSNS-MR------QAKTAFPG----LGSP-IRYVDVTYDGRWILGTTD--T 93 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~-dG~IRLyD~~~-~r------~aKt~lpg----lGdP-I~~vdvS~DG~~lLaT~~--~ 93 (244)
+.+=+-|+++++|+ +++++. -|.|++|-... +. ..+..-++ =-.| .-...++|||++|++.+. +
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 33337899999997 555553 68899998742 11 11100000 0012 777899999999988886 5
Q ss_pred ceEEEEeeeccCCCCcccccccccC-CCCCcceeeeeCccc
Q 044877 94 YLILICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLD 133 (244)
Q Consensus 94 ~L~L~dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~ 133 (244)
.|.+++.. | |++-.....- ...-.||.+..+|..
T Consensus 168 ri~~y~~~--d----g~L~~~~~~~v~~G~GPRHi~FHpn~ 202 (346)
T COG2706 168 RIFLYDLD--D----GKLTPADPAEVKPGAGPRHIVFHPNG 202 (346)
T ss_pred eEEEEEcc--c----CccccccccccCCCCCcceEEEcCCC
Confidence 59999864 3 2222222211 223348888877753
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.87 E-value=42 Score=36.19 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEecc-----ccccceecCCCCCCCeeEEEeCCCCCEEE-EeCCcceEEEEee
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN-----SMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTTDTYLILICTL 101 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~-----~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~~~~L~L~dt~ 101 (244)
-.+.++++.+.+=. ||+|=.+|.|-+|-.- +.| .+.. ...++|||++.+-.||+-+| +.+.+.++++.+.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~-~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR-QDYS-HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc-eeee-ccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence 34588999999755 9999999999999773 222 3322 34789999999999999844 5555667776654
No 308
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=77.35 E-value=9.9 Score=36.66 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=58.0
Q ss_pred ceeEEEecCCCc-EEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877 32 NFQCFASTGDGS-IVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICTLFTD 104 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~~~~ 104 (244)
.-+||--+|.++ +|+||.--.|-+|=....+ ..|..-..+...|+++|..|++-.|+++| +...|++-+.|++
T Consensus 102 AAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~ 179 (361)
T KOG1523|consen 102 AATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG 179 (361)
T ss_pred ceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeec
Confidence 468999999887 9999999999998876544 12322234888999999999999998886 5668888888875
No 309
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=76.38 E-value=13 Score=33.37 Aligned_cols=63 Identities=24% Similarity=0.285 Sum_probs=43.6
Q ss_pred CCCceeEEEecCCCc-EEEeCCCCcEEEEe-cccc--ccceecCCCCCCCeeEEEeCCCCCEEEEeC
Q 044877 29 RGTNFQCFASTGDGS-IVVGSLDGKIRLYS-SNSM--RQAKTAFPGLGSPIRYVDVTYDGRWILGTT 91 (244)
Q Consensus 29 ~~~~Ft~vats~~G~-IavGS~dG~IRLyD-~~~~--r~aKt~lpglGdPI~~vdvS~DG~~lLaT~ 91 (244)
+...++.-..+++|. .++...++..|++- ...+ .......+++..+|+++.+||||..++.-.
T Consensus 64 ~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 64 TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEE
Confidence 444678888899988 46667777788883 2222 223333455555999999999999998655
No 310
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.18 E-value=8.5 Score=42.12 Aligned_cols=71 Identities=24% Similarity=0.296 Sum_probs=51.2
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEE---EeCCCCCEEEEeCCcceEEEEeee
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYV---DVTYDGRWILGTTDTYLILICTLF 102 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~v---dvS~DG~~lLaT~~~~L~L~dt~~ 102 (244)
.-+.+|+|++.+|. ++.|-.+|.|.+||.-..+-++ .+.-+|.|.++| ..+.++.-+| |+++.=.+|...+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~-~i~e~~ap~t~vi~v~~t~~nS~ll-t~D~~Gsf~~lv~ 204 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK-VITEHGAPVTGVIFVGRTSQNSKLL-TSDTGGSFWKLVF 204 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCccee-eeeecCCccceEEEEEEeCCCcEEE-EccCCCceEEEEe
Confidence 34589999999999 8899999999999996555455 566788887776 5667777444 4443222666554
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=74.14 E-value=4.5 Score=39.47 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=44.6
Q ss_pred eEEEecC-CC-cEEEeCCCCcEEEEeccccccce--ecCCCCCCCe--eEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 34 QCFASTG-DG-SIVVGSLDGKIRLYSSNSMRQAK--TAFPGLGSPI--RYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 34 t~vats~-~G-~IavGS~dG~IRLyD~~~~r~aK--t~lpglGdPI--~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
||+.+=. ++ ++++.+.+|+|+|||.+.-++.| +...||-.-- .-+-+-+.+..|+|.-+ -|.|+|-+.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 4444433 33 49999999999999997555422 2334543222 22356688888988776 669999874
No 312
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=73.29 E-value=74 Score=34.04 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=95.8
Q ss_pred ccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccc--cceecCC--CCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877 26 QFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMR--QAKTAFP--GLGSPIRYVDVTYDGRWILGTTDTYLILICTL 101 (244)
Q Consensus 26 ~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r--~aKt~lp--glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~ 101 (244)
+|+..++|..+ +++ ...+|=.+..+-.||.+... ...+.+. ..+...++++.|.+|..++++.+.-|||+|..
T Consensus 530 ~~~p~~K~aql--t~e-~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~ 606 (794)
T PF08553_consen 530 DIAPDSKFAQL--TNE-QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL 606 (794)
T ss_pred Eeccccccccc--CCC-ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc
Confidence 34444444332 233 57888889999999987421 1111111 25678999999999999988889999999932
Q ss_pred eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCC
Q 044877 102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGS 181 (244)
Q Consensus 102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~ 181 (244)
++++ |+ .| --.|.+| .+ -+. + ...++|++.|..|+++.+.. +..|+
T Consensus 607 ---g~~A-KT--------------~l-------p~lG~pI---~~-iDv-t---~DGkwilaTc~tyLlLi~t~-~~~g~ 652 (794)
T PF08553_consen 607 ---GKRA-KT--------------AL-------PGLGDPI---IG-IDV-T---ADGKWILATCKTYLLLIDTL-IKDGK 652 (794)
T ss_pred ---chhh-hh--------------cC-------CCCCCCe---eE-EEe-c---CCCcEEEEeecceEEEEEEe-eecCC
Confidence 1111 00 00 1134444 11 111 2 25799999999999999983 22321
Q ss_pred c-cccccccCC---ceeeeeEEEecCcccc--------ccceecCccccCCCCCCCEEEEcC
Q 044877 182 H-ECYQNQEGL---KSCYCYKIVLKDDSIV--------DSRFMHDKFAVSDLPEAPLVIATP 231 (244)
Q Consensus 182 ~-~~y~~~~~l---~~~~~Y~i~~~~e~iv--------~~~f~~d~f~~~~~~~~~iiva~~ 231 (244)
- .......++ +.=.|+.++..+|.+. .-.|-.-.|.-|.+....-|||+-
T Consensus 653 ~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~Ivtst 714 (794)
T PF08553_consen 653 NSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTST 714 (794)
T ss_pred ccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEec
Confidence 0 000000111 2336888988888764 234444455444333344555543
No 313
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=72.89 E-value=6.9 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=21.3
Q ss_pred ceeEEEecCCCcEEEeCCCCcEEEEe
Q 044877 32 NFQCFASTGDGSIVVGSLDGKIRLYS 57 (244)
Q Consensus 32 ~Ft~vats~~G~IavGS~dG~IRLyD 57 (244)
..+|+|.++. .||++...+-+|+|.
T Consensus 3 ~i~aia~g~~-~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDS-WVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCC-EEEEEeCCCeEEecC
Confidence 4678888776 899999999999984
No 314
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.31 E-value=12 Score=38.87 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=50.8
Q ss_pred EEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCee-EEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 36 FASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIR-YVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 36 vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~-~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
+-.+|.=. ||++..+|+|-++...-.| .- .+|-.|.+++ +++.-|||+.|+..- +.+|+|.|..
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n~qR-lw-tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLNWQR-LW-TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEeccce-eE-eccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 44566544 9999999999999886444 33 3676788888 999999999999876 5789999984
No 315
>PRK13616 lipoprotein LpqB; Provisional
Probab=70.49 E-value=13 Score=37.87 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=40.5
Q ss_pred CCceeEEEecCCCc-EEEeCCC-CcEEEEe-----------ccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceE
Q 044877 30 GTNFQCFASTGDGS-IVVGSLD-GKIRLYS-----------SNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLI 96 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~d-G~IRLyD-----------~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~ 96 (244)
....++-..+++|. |++-+.. -.+|+.+ ..++. ++. .++.+|.++.+||||+.|+......|.
T Consensus 396 g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~ 471 (591)
T PRK13616 396 GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMIIGGKVY 471 (591)
T ss_pred CCCCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEECCEEE
Confidence 33478888999966 6666432 1233333 32221 111 356689999999999999987766554
Q ss_pred E
Q 044877 97 L 97 (244)
Q Consensus 97 L 97 (244)
+
T Consensus 472 V 472 (591)
T PRK13616 472 L 472 (591)
T ss_pred E
Confidence 4
No 316
>PRK04043 tolB translocation protein TolB; Provisional
Probab=70.29 E-value=20 Score=34.72 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=36.0
Q ss_pred eEEEecCCCc-EEE-eCCC--CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877 34 QCFASTGDGS-IVV-GSLD--GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 34 t~vats~~G~-Iav-GS~d--G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~ 92 (244)
.+.+.+|+|. |+. .+.+ .+|-++|..++. .+-+.++-+ .-..-.+||||++|+-+++
T Consensus 236 ~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~-~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPG-IDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred EeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCC-ccCccEECCCCCEEEEEEC
Confidence 4677899996 554 4434 468888876654 332222212 2345589999999997764
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=70.20 E-value=6.4 Score=33.01 Aligned_cols=78 Identities=22% Similarity=0.231 Sum_probs=48.4
Q ss_pred ceecccccccCC-CCceeEEEecCCCcEEEeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCCEEEEeCCcce
Q 044877 18 VLNWSQGHQFSR-GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGRWILGTTDTYL 95 (244)
Q Consensus 18 ~~~~~~~k~Y~~-~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~~~~L 95 (244)
-+-|... +.. .....+.++..+|.+++++.+|.|..||..+++.. +..+ ..++...-+..+++.++++.++.|
T Consensus 14 ~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~---~~~~~~~~~~~~~~v~v~~~~~~l 88 (238)
T PF13360_consen 14 KELWSYD--LGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL---PGPISGAPVVDGGRVYVGTSDGSL 88 (238)
T ss_dssp EEEEEEE--CSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC---SSCGGSGEEEETTEEEEEETTSEE
T ss_pred CEEEEEE--CCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec---cccccceeeecccccccccceeee
Confidence 4555552 322 33344445556778999999999999998766533 2222 344333345566666666666778
Q ss_pred EEEEe
Q 044877 96 ILICT 100 (244)
Q Consensus 96 ~L~dt 100 (244)
..+|+
T Consensus 89 ~~~d~ 93 (238)
T PF13360_consen 89 YALDA 93 (238)
T ss_dssp EEEET
T ss_pred Eeccc
Confidence 88884
No 318
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=69.11 E-value=13 Score=39.56 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=49.4
Q ss_pred CCCceeEEEecC-CCcEEEeCCCCcEEEEeccccc--------------cceecCCCCCCCeeEEEeCCCCCEEEEeCCc
Q 044877 29 RGTNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMR--------------QAKTAFPGLGSPIRYVDVTYDGRWILGTTDT 93 (244)
Q Consensus 29 ~~~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r--------------~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~ 93 (244)
-+.+..|++.+. .|+||.|+.||.+++--.-+.. -...+|+||...|.-+...-+-+- |.|+++
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCC
Confidence 356688999998 7889999999999998663211 012247889888887777655554 477773
Q ss_pred c--eEEEE
Q 044877 94 Y--LILIC 99 (244)
Q Consensus 94 ~--L~L~d 99 (244)
. |++|=
T Consensus 92 ~GlIiVWm 99 (1189)
T KOG2041|consen 92 SGLIIVWM 99 (1189)
T ss_pred CceEEEEe
Confidence 3 66664
No 319
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=68.82 E-value=29 Score=30.70 Aligned_cols=57 Identities=9% Similarity=0.054 Sum_probs=38.7
Q ss_pred cEEEeCCCCcEEEEecccccccee------cCC-------CCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877 43 SIVVGSLDGKIRLYSSNSMRQAKT------AFP-------GLGSPIRYVDVTYDGRWILGTTDTYLILIC 99 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r~aKt------~lp-------glGdPI~~vdvS~DG~~lLaT~~~~L~L~d 99 (244)
++++=+.+|.+++||..+++..-. .|. .....|+++.++.+|.=|+.-+....-.|+
T Consensus 24 ~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 24 YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 488889999999999976542110 111 255789999999999988755543333333
No 320
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=68.52 E-value=13 Score=34.17 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=37.0
Q ss_pred CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEee
Q 044877 41 DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTL 101 (244)
Q Consensus 41 ~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~ 101 (244)
++.+++|+.+|.+..||..+++..-. . .+++++.+.-+..+++.++.+.+..|..||..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~-~-~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~ 163 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWR-A-KLSSEVLSPPLVANGLVVVRTNDGRLTALDAA 163 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeee-e-ccCceeecCCEEECCEEEEECCCCeEEEEEcC
Confidence 56799999999999999876653321 1 23344433222235555544456778888863
No 321
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=68.30 E-value=24 Score=37.94 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=45.6
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC---CCCCEEEEe--CCcceEEEEee
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT---YDGRWILGT--TDTYLILICTL 101 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS---~DG~~lLaT--~~~~L~L~dt~ 101 (244)
||++...|.|-|||.... -+..-|....+||..++.- +|.+.+|++ ..+||.||+|.
T Consensus 82 iAsaD~~GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 82 IASADISGRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred EEeccccCcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 899999999999999754 3555677889999999765 567677755 36999999985
No 322
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=68.15 E-value=8.8 Score=24.54 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.4
Q ss_pred CcEEEeCCCCcEEEEeccccc
Q 044877 42 GSIVVGSLDGKIRLYSSNSMR 62 (244)
Q Consensus 42 G~IavGS~dG~IRLyD~~~~r 62 (244)
|.|++++.+|.|.-+|..+++
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~ 21 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGK 21 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTS
T ss_pred CEEEEeCCCCEEEEEECCCCC
Confidence 468889999999999998876
No 323
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=67.50 E-value=8.2 Score=41.06 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=74.1
Q ss_pred CCceeEEEecCCCc-EEEeCCCCcEEEEecc---c--------------------------------------------c
Q 044877 30 GTNFQCFASTGDGS-IVVGSLDGKIRLYSSN---S--------------------------------------------M 61 (244)
Q Consensus 30 ~~~Ft~vats~~G~-IavGS~dG~IRLyD~~---~--------------------------------------------~ 61 (244)
+-.|.++..+|.|. ||++|.-|..-+ |+- + -
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 34488999999887 999998886422 110 0 0
Q ss_pred ccc-eecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcC
Q 044877 62 RQA-KTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAG 138 (244)
Q Consensus 62 r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G 138 (244)
.+| .-.|-|++..|+++-+.|.-.=||||| ++|+.+||++- |++-- -....-
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS---------------------p~~p~----ys~~~w 157 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS---------------------PHRPF----YSTSSW 157 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC---------------------CCcce----eeeecc
Confidence 023 223458888999999999999999999 58899999852 22110 001110
Q ss_pred CccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 139 VNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 139 ~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
+ ..-+..+.|. +...+.+.|-|+-+.+||+++
T Consensus 158 ~-s~asqVkwny-----k~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 158 R-SAASQVKWNY-----KDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred c-ccCceeeecc-----cCcchhhhccCCceEEEeccC
Confidence 0 1111124442 256788999999999999875
No 324
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=66.85 E-value=9.7 Score=34.98 Aligned_cols=66 Identities=17% Similarity=0.062 Sum_probs=48.0
Q ss_pred EEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEe--C-CcceEEEEeee
Q 044877 36 FASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGT--T-DTYLILICTLF 102 (244)
Q Consensus 36 vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT--~-~~~L~L~dt~~ 102 (244)
|....++. ..+|+.||.||.|...-.|..- ..-+++ .|+....++.-+++|..+ + +..|.+|+...
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g-~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLG-YVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceee-eeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34444554 7899999999999986443222 123455 899999999999999877 5 46699999753
No 325
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=66.06 E-value=6.4 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=17.8
Q ss_pred eEEEecCCCcEEEeCCCCcEEEEecc
Q 044877 34 QCFASTGDGSIVVGSLDGKIRLYSSN 59 (244)
Q Consensus 34 t~vats~~G~IavGS~dG~IRLyD~~ 59 (244)
++.+. .+|.|++|+.||.+..+|..
T Consensus 15 ~~~~v-~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 15 SSPAV-AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp S--EE-CTSEEEEE-TTSEEEEEETT
T ss_pred cCCEE-ECCEEEEEcCCCEEEEEeCC
Confidence 34444 46789999999999999974
No 326
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=65.86 E-value=73 Score=30.71 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=32.7
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEe
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICT 100 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt 100 (244)
.+.....+.|.+-|.... + .++. ..||++|++||||++|..-+. .+|.++.+
T Consensus 193 ~i~~~~g~~i~~i~~~~~---~-~i~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 193 EILLANGETIYIIDENSF---K-QIDS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred EEEEecCCEEEEEEcccc---c-cccC-CCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 344445566664554221 2 1342 359999999999999975554 56777664
No 327
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=65.17 E-value=34 Score=31.69 Aligned_cols=76 Identities=24% Similarity=0.340 Sum_probs=51.0
Q ss_pred ceecccccccC-CCCceeEEEecCCCcEEEeCCCC-------cEEEEeccccccceec-CCC-------------CCCCe
Q 044877 18 VLNWSQGHQFS-RGTNFQCFASTGDGSIVVGSLDG-------KIRLYSSNSMRQAKTA-FPG-------------LGSPI 75 (244)
Q Consensus 18 ~~~~~~~k~Y~-~~~~Ft~vats~~G~IavGS~dG-------~IRLyD~~~~r~aKt~-lpg-------------lGdPI 75 (244)
.|.-.++..|. ...+..+++..++|.+.++++-+ .|+-||.. ++..+.. +|. -..-+
T Consensus 71 ~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~ 149 (326)
T PF13449_consen 71 PLRDPDGQPFPKNGLDPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGF 149 (326)
T ss_pred eccCCCCCcCCcCCCChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCe
Confidence 34444444552 33467799998899999998877 79999975 3332222 443 23457
Q ss_pred eEEEeCCCCCEEEEeCCcc
Q 044877 76 RYVDVTYDGRWILGTTDTY 94 (244)
Q Consensus 76 ~~vdvS~DG~~lLaT~~~~ 94 (244)
.+|+++|||+.|++.....
T Consensus 150 E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 150 EGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred EEEEECCCCCEEEEEECcc
Confidence 8999999999777766544
No 328
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=64.49 E-value=26 Score=36.67 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=59.6
Q ss_pred CCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEecccccccee-------------------cCCCCCCC
Q 044877 15 GAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKT-------------------AFPGLGSP 74 (244)
Q Consensus 15 ~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt-------------------~lpglGdP 74 (244)
.++...|...-++.......+|++..-|. |+..-.||.|-++|..+++.... .+|.+ ++
T Consensus 244 ~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~-~~ 322 (753)
T PF11635_consen 244 PPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCI-QP 322 (753)
T ss_pred CCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccC-CC
Confidence 34578888888888889999999999665 99999999999999986631111 22322 37
Q ss_pred eeEEEeCCCCCEEEEeCC
Q 044877 75 IRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 75 I~~vdvS~DG~~lLaT~~ 92 (244)
+.+|+|||.+--++....
T Consensus 323 ~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 323 PLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred CceEEECcccceEEEEec
Confidence 778999999999987763
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.29 E-value=24 Score=37.62 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=57.4
Q ss_pred ccccccCCCCceeEEEecCC------CcEEEeCCCCcEEEEeccccccceec-CCCCCCCeeEEEeCCCCCEEEEeCCcc
Q 044877 22 SQGHQFSRGTNFQCFASTGD------GSIVVGSLDGKIRLYSSNSMRQAKTA-FPGLGSPIRYVDVTYDGRWILGTTDTY 94 (244)
Q Consensus 22 ~~~k~Y~~~~~Ft~vats~~------G~IavGS~dG~IRLyD~~~~r~aKt~-lpglGdPI~~vdvS~DG~~lLaT~~~~ 94 (244)
.+.++|.=+.+.-+||.+|+ ++.++|+..| +-||-..-..+-++. +-..-.||-+|.. .|.+|+=+.+..
T Consensus 104 ~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G 180 (846)
T KOG2066|consen 104 DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG 180 (846)
T ss_pred ccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC
Confidence 34556777778889999997 6699999999 888887533223323 4444568988765 688898888999
Q ss_pred eEEEEee
Q 044877 95 LILICTL 101 (244)
Q Consensus 95 L~L~dt~ 101 (244)
++++|+-
T Consensus 181 v~vyd~~ 187 (846)
T KOG2066|consen 181 VKVYDTP 187 (846)
T ss_pred cEEEecc
Confidence 9999973
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.52 E-value=15 Score=34.78 Aligned_cols=69 Identities=19% Similarity=0.269 Sum_probs=45.6
Q ss_pred eeEEEecCCCcEEEeCC-CCc-------EEEEecccccc----ceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEE
Q 044877 33 FQCFASTGDGSIVVGSL-DGK-------IRLYSSNSMRQ----AKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILI 98 (244)
Q Consensus 33 Ft~vats~~G~IavGS~-dG~-------IRLyD~~~~r~----aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~ 98 (244)
.--+|.+++|.|+.|-. .|+ |=+++.-..-. .......+..-|-||++++||.+|++||. +.+.+|
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 66788888888766643 222 33333311000 00113467889999999999999999995 779999
Q ss_pred Eee
Q 044877 99 CTL 101 (244)
Q Consensus 99 dt~ 101 (244)
|..
T Consensus 245 d~~ 247 (305)
T PF07433_consen 245 DAA 247 (305)
T ss_pred ECC
Confidence 863
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=63.35 E-value=48 Score=32.13 Aligned_cols=144 Identities=11% Similarity=0.121 Sum_probs=68.4
Q ss_pred CCceeEEEecCCCcEEEeCCCCcEEEEecccccc-----cee-cCC-CCCCCeeEEEeC-----CCC---CEEEEeC-Cc
Q 044877 30 GTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQ-----AKT-AFP-GLGSPIRYVDVT-----YDG---RWILGTT-DT 93 (244)
Q Consensus 30 ~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~-----aKt-~lp-glGdPI~~vdvS-----~DG---~~lLaT~-~~ 93 (244)
.-+.||++.|.=|.+|+|..+|.+-+.|.++... .+. .+. .-...|++|.|+ .|+ -.+++.+ ..
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G 165 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSG 165 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTS
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCC
Confidence 4679999999999999999999999999986431 111 122 234578888666 344 4555544 57
Q ss_pred ceEEEEeeeccCCCCcccccccccCCC--CCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEE
Q 044877 94 YLILICTLFTDKNGTTKTGFNGRMGNK--IAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVI 171 (244)
Q Consensus 94 ~L~L~dt~~~~~~~~~~~GF~~~~~~~--kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvv 171 (244)
.++.+...+.. . -+|+-.+.+. .-..+.++|.|.+. ..|.+..=+...++--...-..+-.+|.++.+=+-+
T Consensus 166 ~v~~fkIlp~~-~----g~f~v~~~~~~~~~~~~i~~I~~i~~-~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 166 NVLTFKILPSS-N----GRFSVQFAGATTNHDSPILSIIPINA-DTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEEEEEEEE-G-G----G-EEEEEEEEE--SS----EEEEEET-TT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred CEEEEEEecCC-C----CceEEEEeeccccCCCceEEEEEEEC-CCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 78888876522 1 2355444211 22345666666543 222222222222321000112334566666666666
Q ss_pred Eechhhhc
Q 044877 172 WNFQQVKN 179 (244)
Q Consensus 172 Wn~~kV~~ 179 (244)
..+-+.+.
T Consensus 240 ~~~~~~k~ 247 (395)
T PF08596_consen 240 FKPPKSKG 247 (395)
T ss_dssp E-TT---E
T ss_pred EeCCCCcc
Confidence 66655443
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.78 E-value=35 Score=32.42 Aligned_cols=74 Identities=24% Similarity=0.401 Sum_probs=52.4
Q ss_pred CCceecccccccCCCCceeEEEecCCCc-EEEeCC-CCcEEEEeccccccce-ecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877 16 APVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSL-DGKIRLYSSNSMRQAK-TAFPGLGSPIRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 16 ~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~-dG~IRLyD~~~~r~aK-t~lpglGdPI~~vdvS~DG~~lLaT~~ 92 (244)
.|...|...+.|. -+||++++|. ||+.|- -|.+-+||..+++... ..|+ -+.+|+..++| |++++-.
T Consensus 207 ~p~~~~~~l~~Y~-----gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 207 APEEQWRRLNGYI-----GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CChHHHHhhCCce-----EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCC
Confidence 6777899999996 6999999986 766665 5678999998776332 2233 57889999999 6655555
Q ss_pred cceEEEE
Q 044877 93 TYLILIC 99 (244)
Q Consensus 93 ~~L~L~d 99 (244)
.-+....
T Consensus 277 G~~~~~~ 283 (305)
T PF07433_consen 277 GQLIRLS 283 (305)
T ss_pred ccEEEcc
Confidence 5544433
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.65 E-value=24 Score=35.11 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCCceeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeCC-cceEEEEeeec
Q 044877 28 SRGTNFQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTTD-TYLILICTLFT 103 (244)
Q Consensus 28 ~~~~~Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~~-~~L~L~dt~~~ 103 (244)
.+.-.+..+|++| +|-+..+|.+..|.+.|..+..... ... .+.+|.+.++--|....+ |.-. ..+.++|.+..
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs-sy~-a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS-SYI-AYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccceeee-hee-ccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3444567889999 4459999999999999998764433 233 569999999998888777 5554 55999999864
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=61.02 E-value=9.6 Score=38.37 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=58.0
Q ss_pred cccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccc---cccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEE
Q 044877 25 HQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNS---MRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILIC 99 (244)
Q Consensus 25 k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~---~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~d 99 (244)
|.|--+.-.+.|+.+..-.|.++|.||.++.|-... ..-+| .+-.+-.+|.++++|.||....+-++ ..++++|
T Consensus 4 ksymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVK-hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 4 KSYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVK-HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred hhhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehh-hhHHHHHHHHhhhccccceeEeeccCcccceeEEE
Confidence 457667778888888887899999999999998742 22455 34457789999999999976654354 6699988
Q ss_pred ee
Q 044877 100 TL 101 (244)
Q Consensus 100 t~ 101 (244)
..
T Consensus 83 vE 84 (558)
T KOG0882|consen 83 VE 84 (558)
T ss_pred ee
Confidence 64
No 335
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=60.68 E-value=12 Score=37.41 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=49.2
Q ss_pred CCCCceeEEEecCCCcEEEeCCCCcEEEEeccccc---cceecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 28 SRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMR---QAKTAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
.++++|..+.+-.. =-+||..-.++.|...-.+ +.| -+-+|-..|..|.||.+|+||++.-+ ...+||+..
T Consensus 12 ~t~~~~~i~~FL~Q--R~i~~~~~~~k~F~~~~~~R~~~qK-D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~d 86 (609)
T KOG4227|consen 12 STNNQFKIESFLCQ--REIGSVKSVVKTFRPDFQHRPFCQK-DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVD 86 (609)
T ss_pred cccCcceeeeeeee--cccCCChhhhhhhchhhhhcchhhh-hhhhhccccceeeeccCCeEEeecCCcceeeeechH
Confidence 46666766655442 2356777777777664222 334 34567789999999999999999887 559999863
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=60.59 E-value=7.8 Score=37.30 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=47.3
Q ss_pred eeEEEecC-CCcEEEeCCCC----------cEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEE-EeCC--cceEEE
Q 044877 33 FQCFASTG-DGSIVVGSLDG----------KIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWIL-GTTD--TYLILI 98 (244)
Q Consensus 33 Ft~vats~-~G~IavGS~dG----------~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lL-aT~~--~~L~L~ 98 (244)
.+-+|.++ .|++++--..| +|=.||..++++.. .+| ++.||.+|.+|.|.+=+| +.+. .+|.++
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-RIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-EEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-EEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 44677776 55666644433 38899998887665 356 788999999999999666 5543 679999
Q ss_pred Eee
Q 044877 99 CTL 101 (244)
Q Consensus 99 dt~ 101 (244)
|..
T Consensus 318 D~~ 320 (342)
T PF06433_consen 318 DAA 320 (342)
T ss_dssp ETT
T ss_pred eCc
Confidence 974
No 337
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=60.41 E-value=1.9e+02 Score=30.54 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=60.7
Q ss_pred CCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCcccc-cccccCCCCCcceeeeeCccchhhcCCccceeeeee
Q 044877 70 GLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTG-FNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQF 148 (244)
Q Consensus 70 glGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~G-F~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akF 148 (244)
...-.|..|.++|+|++|+-.-...|.++.. ++. -|+.| |+. - +....-+--|-+..+.....+-+=.+-
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~L-P~r---~g~~~~~~~----g-~~~i~Crt~~v~~~~~~~~~~~~i~qv 152 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVLEL-PRR---WGKNGEFED----G-KKEINCRTVPVDERFFTSNSSLEIKQV 152 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEEEe-ccc---cCccccccC----C-CcceeEEEEEechhhccCCCCceEEEE
Confidence 4566899999999999998777777777774 321 11222 321 1 122233334444444332222233455
Q ss_pred eeecCCCCcceEEEEeeCCeEEEEechh
Q 044877 149 SWVTENGKQERHLVATVGKFSVIWNFQQ 176 (244)
Q Consensus 149 n~~tg~~~~E~~IvtStG~fvvvWn~~k 176 (244)
.|.+....+...+|=+.++.+=.+|+.+
T Consensus 153 ~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 153 RWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred EEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 6667655678899999999999999963
No 338
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=59.75 E-value=1.5e+02 Score=31.08 Aligned_cols=186 Identities=18% Similarity=0.243 Sum_probs=93.3
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEecc--------cc-ccceecCC-CCCCCeeEEEeC-------CCCCEEE
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSN--------SM-RQAKTAFP-GLGSPIRYVDVT-------YDGRWIL 88 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~--------~~-r~aKt~lp-glGdPI~~vdvS-------~DG~~lL 88 (244)
..+..++-++|+-+.|+ +-.+..+=+---|... +. ..-...+. ..|.||..|.++ ...+||+
T Consensus 23 ~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~ 102 (765)
T PF10214_consen 23 GSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLA 102 (765)
T ss_pred CCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEE
Confidence 35666677778878887 4444333332222210 00 01122344 689999999999 2336999
Q ss_pred EeCCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCcc---chhhcCCccceeeeeeeeecCCCCcceEEEEee
Q 044877 89 GTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPL---DSHLAGVNNKFHKAQFSWVTENGKQERHLVATV 165 (244)
Q Consensus 89 aT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe---~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtSt 165 (244)
+=+.+.+.|+...+... +....+.+-+|.++|- ....+|+ ..|--..|| +.. ..+-.||-..
T Consensus 103 Vrt~~st~I~~p~~~~~-----------~~~~~~~~s~i~~~~l~~i~~~~tgg-~~~aDv~Fn--P~~-~~q~AiVD~~ 167 (765)
T PF10214_consen 103 VRTETSTTILRPEYHRV-----------ISSIRSRPSRIDPNPLLTISSSDTGG-FPHADVAFN--PWD-QRQFAIVDEK 167 (765)
T ss_pred EEcCCEEEEEEcccccc-----------cccccCCccccccceeEEechhhcCC-CccceEEec--cCc-cceEEEEecc
Confidence 98888888877654211 1111122333444442 1122332 122233666 322 2444555554
Q ss_pred CCeEEEEechhhhcCCccccccccCCceeeeeEEEecCccc-cccceecCcc---ccCCCCCCCEEEEcCCceeeeeecc
Q 044877 166 GKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSI-VDSRFMHDKF---AVSDLPEAPLVIATPMKVSSFSISS 241 (244)
Q Consensus 166 G~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~i-v~~~f~~d~f---~~~~~~~~~iiva~~~~v~~~~~~~ 241 (244)
.+--+|+++.-.+.....++.. +.. ...| .|.+ -.+++ .|..+ -..++|+....+..+++..
T Consensus 168 -G~Wsvw~i~~~~~~~~~~~~~~--~~~---------~gsi~~d~~-e~s~w~rI~W~~~-~~~lLv~~r~~l~~~d~~~ 233 (765)
T PF10214_consen 168 -GNWSVWDIKGRPKRKSSNLRLS--RNI---------SGSIIFDPE-ELSNWKRILWVSD-SNRLLVCNRSKLMLIDFES 233 (765)
T ss_pred -CcEEEEEeccccccCCcceeec--cCC---------CccccCCCc-ccCcceeeEecCC-CCEEEEEcCCceEEEECCC
Confidence 5788999944444443332211 001 1112 1110 01333 23332 3689999999988888754
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.20 E-value=19 Score=37.45 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=38.7
Q ss_pred cccccccC-CCCcee-EEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeC
Q 044877 21 WSQGHQFS-RGTNFQ-CFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVT 81 (244)
Q Consensus 21 ~~~~k~Y~-~~~~Ft-~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS 81 (244)
|.---.+. .+-+.+ |.+..++|. ||+|=.||+|||-|..++-...-.+-..-++|+.+-++
T Consensus 51 ~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 51 WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence 43333344 455566 999999999 99999999999999964432221111233455555443
No 340
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=59.12 E-value=27 Score=26.98 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=41.5
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEe
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICT 100 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt 100 (244)
.+.|...|.|=.||.. ..+....|+..| .||.+|||+++|-.++. ..|.++..
T Consensus 29 ~~l~~~~~~Vvyyd~~---~~~~va~g~~~a-NGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 29 TYLGLPWGNVVYYDGK---EVKVVASGFSFA-NGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred HHhcCCCceEEEEeCC---EeEEeeccCCCC-ceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 5677788999999973 466677777766 79999999999987763 66888774
No 341
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=57.82 E-value=31 Score=40.32 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=73.0
Q ss_pred cCCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe--
Q 044877 14 AGAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-- 90 (244)
Q Consensus 14 ~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-- 90 (244)
+..+|.-|.+.-+ -..|...++..|. ..++.-||+|-+|... .+--+...-+.-.-..+.|-. -+++|
T Consensus 2239 ~~~~v~~~rt~g~----s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~~~s~qchnk~~~Df~Fi~---s~~~tag 2309 (2439)
T KOG1064|consen 2239 HGQQVVCFRTAGN----SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKPYTSWQCHNKALSDFRFIG---SLLATAG 2309 (2439)
T ss_pred CCCeEEEeeccCc----chhhhhhhcccCCceeeeccCCceeecccC--CcceeccccCCccccceeeee---hhhhccc
Confidence 3445777777655 3356777788777 8999999999999984 112222121222222333322 33444
Q ss_pred --CCcc-eEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCC
Q 044877 91 --TDTY-LILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGK 167 (244)
Q Consensus 91 --~~~~-L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~ 167 (244)
++++ +-||||... ..+-|- + +-|+..-|+.-|- .+....|.++-..
T Consensus 2310 ~s~d~~n~~lwDtl~~-------------------~~~s~v------~-~~H~~gaT~l~~~-----P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2310 RSSDNRNVCLWDTLLP-------------------PMNSLV------H-TCHDGGATVLAYA-----PKHQLLISGGRKG 2358 (2439)
T ss_pred cCCCCCcccchhcccC-------------------ccccee------e-eecCCCceEEEEc-----CcceEEEecCCcC
Confidence 2444 899999752 212221 1 2234444555554 2366777777788
Q ss_pred eEEEEechhhhcC
Q 044877 168 FSVIWNFQQVKNG 180 (244)
Q Consensus 168 fvvvWn~~kV~~g 180 (244)
.|.+||.++-..-
T Consensus 2359 ~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLR 2371 (2439)
T ss_pred cEEEeehHHHHHH
Confidence 8888887765543
No 342
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=57.24 E-value=73 Score=28.19 Aligned_cols=33 Identities=27% Similarity=0.592 Sum_probs=24.9
Q ss_pred cCCC--CCCCeeEEEeCCCCCEEEEeC-CcceEEEEee
Q 044877 67 AFPG--LGSPIRYVDVTYDGRWILGTT-DTYLILICTL 101 (244)
Q Consensus 67 ~lpg--lGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt~ 101 (244)
++|. +|.|+..+. .+|.||+|-| ...+.+||..
T Consensus 5 l~P~i~Lgs~~~~l~--~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLE--CNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred ccCcEecCCceEEEE--eCCCEEEEEeCCCeEEEEECC
Confidence 4564 788988865 6788888554 6789999974
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.03 E-value=2.1e+02 Score=28.22 Aligned_cols=176 Identities=18% Similarity=0.216 Sum_probs=85.0
Q ss_pred ceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceE
Q 044877 18 VLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLI 96 (244)
Q Consensus 18 ~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~ 96 (244)
.+..+..+-.+....-+.+..+|+|+ |++ ..||+.-+|.....|. |.. |. =.+..++++++|.+....+.|.
T Consensus 20 ~~~l~~k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-k~~----G~-g~~~vw~~~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 20 RLPLSVKELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-KAF----GS-GLSFVWSSRNRYAVLESSSTIK 92 (443)
T ss_dssp -B----EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-EEE----EE--SEEEE-TSSEEEEE-TTS-EE
T ss_pred eeeEEeccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-ccc----Cc-eeEEEEecCccEEEEECCCeEE
Confidence 34444444456666678999999999 555 8899999999876653 322 22 2456777799999888877788
Q ss_pred EEEeeeccCC-CCccccc--ccccCCCCCcceeeeeCccc-hhhc----CC---ccceee-eeeeeecCCCCcceEEEEe
Q 044877 97 LICTLFTDKN-GTTKTGF--NGRMGNKIAAPRLLKLTPLD-SHLA----GV---NNKFHK-AQFSWVTENGKQERHLVAT 164 (244)
Q Consensus 97 L~dt~~~~~~-~~~~~GF--~~~~~~~kp~pr~L~L~Pe~-~~~~----G~---~~~Ft~-akFn~~tg~~~~E~~IvtS 164 (244)
++... ++.. ..=+..| ++-|+ +++|-++.++ +.++ +. .+.+.+ -+--|. +.++.+.+.+
T Consensus 93 I~kn~-~~~~~k~i~~~~~~~~If~-----G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws---~~g~~val~t 163 (443)
T PF04053_consen 93 IYKNF-KNEVVKSIKLPFSVEKIFG-----GNLLGVKSSDFICFYDWETGKLIRRIDVSAVKYVIWS---DDGELVALVT 163 (443)
T ss_dssp EEETT-EE-TT-----SS-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS-E-EEEEE----TTSSEEEEE-
T ss_pred EEEcC-ccccceEEcCCcccceEEc-----CcEEEEECCCCEEEEEhhHcceeeEEecCCCcEEEEE---CCCCEEEEEe
Confidence 87432 1111 0112222 11122 5677777777 5333 22 244444 355564 3367776666
Q ss_pred eCCeE-EEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCcc
Q 044877 165 VGKFS-VIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKF 216 (244)
Q Consensus 165 tG~fv-vvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f 216 (244)
...+. ..+|++.+.+ . -.+|.....+ .+---.+.|....|..|=|
T Consensus 164 ~~~i~il~~~~~~~~~-~-----~~~g~e~~f~-~~~E~~~~IkSg~W~~d~f 209 (443)
T PF04053_consen 164 KDSIYILKYNLEAVAA-I-----PEEGVEDAFE-LIHEISERIKSGCWVEDCF 209 (443)
T ss_dssp S-SEEEEEE-HHHHHH-B-----TTTB-GGGEE-EEEEE-S--SEEEEETTEE
T ss_pred CCeEEEEEecchhccc-c-----cccCchhceE-EEEEecceeEEEEEEcCEE
Confidence 55544 4788887766 1 1245443333 1111144555555555434
No 344
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.67 E-value=20 Score=35.28 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=35.5
Q ss_pred CcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeee
Q 044877 42 GSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLF 102 (244)
Q Consensus 42 G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~ 102 (244)
|.+..-+.++.|.+||-.+++..+. ++ + .||..|-.|+||.+|+..|++.+.+++-..
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~-i~-v-~~vk~V~Ws~~g~~val~t~~~i~il~~~~ 174 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRR-ID-V-SAVKYVIWSDDGELVALVTKDSIYILKYNL 174 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEE-ES-S--E-EEEEE-TTSSEEEEE-S-SEEEEEE-H
T ss_pred CcEEEEECCCCEEEEEhhHcceeeE-Ee-c-CCCcEEEEECCCCEEEEEeCCeEEEEEecc
Confidence 7744444445899999976654432 23 2 249999999999999999998888877543
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=55.52 E-value=22 Score=34.84 Aligned_cols=58 Identities=29% Similarity=0.406 Sum_probs=28.8
Q ss_pred EEEecCCCcEEEeCCCC-----------------cEEEEeccccccceec--------CCCCCC-CeeEEEeCCCCCEEE
Q 044877 35 CFASTGDGSIVVGSLDG-----------------KIRLYSSNSMRQAKTA--------FPGLGS-PIRYVDVTYDGRWIL 88 (244)
Q Consensus 35 ~vats~~G~IavGS~dG-----------------~IRLyD~~~~r~aKt~--------lpglGd-PI~~vdvS~DG~~lL 88 (244)
-...+++|.+++|.--+ -|+|+|...++..+.. +.+.-. .=-++.|||||+|||
T Consensus 287 H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~Vl 366 (386)
T PF14583_consen 287 HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVL 366 (386)
T ss_dssp EEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEE
T ss_pred eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEE
Confidence 44556788887765332 4667777544322100 111111 114779999999999
Q ss_pred EeCC
Q 044877 89 GTTD 92 (244)
Q Consensus 89 aT~~ 92 (244)
=+++
T Consensus 367 F~Sd 370 (386)
T PF14583_consen 367 FRSD 370 (386)
T ss_dssp EEE-
T ss_pred EECC
Confidence 6663
No 346
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=54.71 E-value=26 Score=32.73 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=35.3
Q ss_pred CCcEEEeCCCCcEEEEeccccccc-eecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEE
Q 044877 41 DGSIVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILIC 99 (244)
Q Consensus 41 ~G~IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~d 99 (244)
+|.|++++.+|.|...|..+++.. +..++ +.++.+=-+-.||+.++++.+.+|..++
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVD--SSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcC--CCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 678999999999999998776532 22222 2233321112467766666667776654
No 347
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=54.35 E-value=26 Score=32.86 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=41.5
Q ss_pred ccCCCCce-eEEEecCCCcEEEeCCCCcEEEEeccccc----cceecCCCCC-------CCeeEEEeCCCCCEEEEeC
Q 044877 26 QFSRGTNF-QCFASTGDGSIVVGSLDGKIRLYSSNSMR----QAKTAFPGLG-------SPIRYVDVTYDGRWILGTT 91 (244)
Q Consensus 26 ~Y~~~~~F-t~vats~~G~IavGS~dG~IRLyD~~~~r----~aKt~lpglG-------dPI~~vdvS~DG~~lLaT~ 91 (244)
.|+.+-.+ ..+++.++| |++++.....|+.|..... ..+.++.+++ ....++.+.|||+..++..
T Consensus 66 vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 66 VFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44444443 788889999 9998888777776763211 1122333332 3477899999998776554
No 348
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=53.89 E-value=30 Score=28.96 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=38.7
Q ss_pred ecCCCcEEEeCCCCcEEEEeccccccceec-C---CCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877 38 STGDGSIVVGSLDGKIRLYSSNSMRQAKTA-F---PGLGSPIRYVDVTYDGRWILGTT-DTYLILICT 100 (244)
Q Consensus 38 ts~~G~IavGS~dG~IRLyD~~~~r~aKt~-l---pglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt 100 (244)
...++.|++++.+|.|+.+|..+++..-.. . |..+ -........+|..+++.+ ...|..+|.
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~ 139 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDP 139 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEET
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEec
Confidence 445667999999999999998777654431 1 2222 122233333466666665 677999885
No 349
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=53.86 E-value=17 Score=21.65 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=19.3
Q ss_pred cCCCcEEEeCCCCcEEEEeccccc
Q 044877 39 TGDGSIVVGSLDGKIRLYSSNSMR 62 (244)
Q Consensus 39 s~~G~IavGS~dG~IRLyD~~~~r 62 (244)
..+|.+++|+.+|.+.-+|..+++
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCc
Confidence 345679999999999999986654
No 350
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=53.75 E-value=1.4e+02 Score=28.65 Aligned_cols=102 Identities=13% Similarity=0.143 Sum_probs=63.4
Q ss_pred cEEEeCCCCcEEEEeccccccce-ecCCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEeeeccCCCCcccccccccCCC
Q 044877 43 SIVVGSLDGKIRLYSSNSMRQAK-TAFPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTLFTDKNGTTKTGFNGRMGNK 120 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r~aK-t~lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~~~~~~~~~~~GF~~~~~~~ 120 (244)
.+-++|.|-++++++....-..+ ...|.+ ..-++.+|+|++|..+--+ .-+-++.. |..
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~--~~ns~~~snd~~~~~~Vgds~~Vf~y~i---d~~-------------- 190 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNL--TQNSLHYSNDPSWGSSVGDSRRVFRYAI---DDE-------------- 190 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeecccc--ceeeeEEcCCCceEEEecCCCcceEEEe---CCc--------------
Confidence 37778888888888874322111 123433 3889999999999988877 44666552 111
Q ss_pred CCcceeee--eCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhh
Q 044877 121 IAAPRLLK--LTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQV 177 (244)
Q Consensus 121 kp~pr~L~--L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV 177 (244)
..++++ +.| ..+..|.- -|+ ...+...|++-+.++-+||++..
T Consensus 191 --sey~~~~~~a~------t~D~gF~~-S~s-----~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 191 --SEYIENIYEAP------TSDHGFYN-SFS-----ENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred --cceeeeeEecc------cCCCceee-eec-----cCcceEEEEecCCcEEEEEeccc
Confidence 122333 111 12345542 333 22699999999999999998754
No 351
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=53.63 E-value=17 Score=35.67 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=21.4
Q ss_pred CCCcEEEeCCCCcEEEEeccccccce
Q 044877 40 GDGSIVVGSLDGKIRLYSSNSMRQAK 65 (244)
Q Consensus 40 ~~G~IavGS~dG~IRLyD~~~~r~aK 65 (244)
.+..+++-+.|+.+|+||..++++..
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 35458899999999999998887633
No 352
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=52.43 E-value=36 Score=34.30 Aligned_cols=22 Identities=23% Similarity=0.151 Sum_probs=19.0
Q ss_pred CCCCCeeEEEeCCCCCEEEEeC
Q 044877 70 GLGSPIRYVDVTYDGRWILGTT 91 (244)
Q Consensus 70 glGdPI~~vdvS~DG~~lLaT~ 91 (244)
..|..|+++++||||++|..+-
T Consensus 499 P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 499 PNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred CCCcccccceECCCCCEEEEEE
Confidence 4799999999999999986653
No 353
>PRK02888 nitrous-oxide reductase; Validated
Probab=51.77 E-value=90 Score=32.62 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=82.2
Q ss_pred eEEEecCCCc--EEEeCCCCcEEEEecccccc----------ceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEE
Q 044877 34 QCFASTGDGS--IVVGSLDGKIRLYSSNSMRQ----------AKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILIC 99 (244)
Q Consensus 34 t~vats~~G~--IavGS~dG~IRLyD~~~~r~----------aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~d 99 (244)
-.+++||+|. +++|-.+++|-++|..+.+. +...-+.+|.-=.|..|+++|. ...|. ++.|.-|+
T Consensus 324 HGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn 402 (635)
T PRK02888 324 HGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWN 402 (635)
T ss_pred cceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEe
Confidence 5789999998 77778899999999976542 1112244666567889999997 44554 57799999
Q ss_pred eeeccCCCCcccccccccCCC-CCcceee--eeCccchhh-c-------CC----ccceeeeeeeee-cCCCCcceEEEE
Q 044877 100 TLFTDKNGTTKTGFNGRMGNK-IAAPRLL--KLTPLDSHL-A-------GV----NNKFHKAQFSWV-TENGKQERHLVA 163 (244)
Q Consensus 100 t~~~~~~~~~~~GF~~~~~~~-kp~pr~L--~L~Pe~~~~-~-------G~----~~~Ft~akFn~~-tg~~~~E~~Ivt 163 (244)
..-- .-.|. |++ .|.-.+| +-.|-|++. + |+ -++|++-||-.+ +...+.+++|==
T Consensus 403 ~~~a------~~~~~---g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidI 473 (635)
T PRK02888 403 IEAA------IRAYK---GEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDI 473 (635)
T ss_pred hHHH------HHHhc---cccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEc
Confidence 6310 00011 111 1222222 224555533 1 22 258888888754 223567889988
Q ss_pred eeCCeEEEEech
Q 044877 164 TVGKFSVIWNFQ 175 (244)
Q Consensus 164 StG~fvvvWn~~ 175 (244)
|.++..++-|+-
T Consensus 474 sgdkM~lv~d~p 485 (635)
T PRK02888 474 SGDKMKLVHDGP 485 (635)
T ss_pred cCCeeEEEecCC
Confidence 999988888764
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=51.51 E-value=1e+02 Score=28.13 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=46.6
Q ss_pred CceeEEEecCC-Cc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877 31 TNFQCFASTGD-GS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT 100 (244)
Q Consensus 31 ~~Ft~vats~~-G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt 100 (244)
.+.+.++.+|+ +. .|+....+.|--+|..+.-..+..|.|.|| -.+|....+|+|+|+.= +..|.+++.
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D-~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGD-YEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SS-EEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCC-ceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 45899999985 55 799999999988997543233444667665 58999999999998774 344655554
No 355
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=51.49 E-value=1.8e+02 Score=27.16 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=34.7
Q ss_pred CCcEEEeCCCCcEEEEeccccccc-eecCCCCCCCee---E-EEeCCCCCEEEEeCCcceEEEEe
Q 044877 41 DGSIVVGSLDGKIRLYSSNSMRQA-KTAFPGLGSPIR---Y-VDVTYDGRWILGTTDTYLILICT 100 (244)
Q Consensus 41 ~G~IavGS~dG~IRLyD~~~~r~a-Kt~lpglGdPI~---~-vdvS~DG~~lLaT~~~~L~L~dt 100 (244)
+|.|++++.+|.+..+|..+++.. +..+.....|+. . ...+.||+..+....+.-.+|..
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 567888888888888888766532 212222222332 1 13456777666555555667754
No 356
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=51.11 E-value=18 Score=36.69 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=46.5
Q ss_pred eeEEEecC--CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC--CcceEEEEe
Q 044877 33 FQCFASTG--DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT--DTYLILICT 100 (244)
Q Consensus 33 Ft~vats~--~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~--~~~L~L~dt 100 (244)
+-+|-+-. .-+|++||.-|.|-+||..+....+ +|.|-..-|-+|-..|=== |||+| +.-|+||--
T Consensus 396 VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~-~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 396 VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR-FMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWTP 465 (559)
T ss_pred cceeeeccCccceEEecCccceEEEEecchhHHHH-HhhcccceEeccCCCCCCc-hhhccCCccceeeecC
Confidence 55566655 5569999999999999998776444 5666666666666555332 56777 355999974
No 357
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=50.37 E-value=33 Score=31.89 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=36.5
Q ss_pred eEEEecCCCcEEEeCCCCcEEEEeccccc-cceecCCC---CC-CCeeEEEeCCC----CCEEEEeC
Q 044877 34 QCFASTGDGSIVVGSLDGKIRLYSSNSMR-QAKTAFPG---LG-SPIRYVDVTYD----GRWILGTT 91 (244)
Q Consensus 34 t~vats~~G~IavGS~dG~IRLyD~~~~r-~aKt~lpg---lG-dPI~~vdvS~D----G~~lLaT~ 91 (244)
+++++.|+|.+.++...|.|++++..+.. ..-..++. .+ .-..+|++.|+ +...|+.+
T Consensus 5 ~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp EEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred eEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 68999999999999999999999943221 01111221 11 25688999995 66555544
No 358
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=49.39 E-value=39 Score=34.45 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=42.8
Q ss_pred EEecCCCc-EEE---eCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-------CcceEEEEee
Q 044877 36 FASTGDGS-IVV---GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-------DTYLILICTL 101 (244)
Q Consensus 36 vats~~G~-Iav---GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-------~~~L~L~dt~ 101 (244)
+-++|.++ |++ |...|.|-+||..+.-..-+.+.+.+ -.-.++||||+|+...+ ++.+.|||..
T Consensus 321 ~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 321 IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 34578777 666 55678899999975332222445444 34458999999998442 3568999963
No 359
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=48.94 E-value=95 Score=30.52 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=43.2
Q ss_pred cccccCCCCceeEEEec--CCCcEEEeCCCCcEEEEeccc----cc-----------cce---ecCCCC-------CCCe
Q 044877 23 QGHQFSRGTNFQCFAST--GDGSIVVGSLDGKIRLYSSNS----MR-----------QAK---TAFPGL-------GSPI 75 (244)
Q Consensus 23 ~~k~Y~~~~~Ft~vats--~~G~IavGS~dG~IRLyD~~~----~r-----------~aK---t~lpgl-------GdPI 75 (244)
....+....+-..++++ ..+.++++..||-|-...+.. .. ... -.+|.. ....
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 217 (547)
T PF11715_consen 138 VPYSFSFRSPHRLAAVTHDSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVA 217 (547)
T ss_dssp -SS-TTTS-EEEEEEE---SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---E
T ss_pred eCCCCCccCCCeEEEEEecCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCcc
Confidence 33445555555555552 344699999999998887743 00 001 011111 3567
Q ss_pred eEEEeCC----CCCEEEEeCC-cceEEEEee
Q 044877 76 RYVDVTY----DGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 76 ~~vdvS~----DG~~lLaT~~-~~L~L~dt~ 101 (244)
..++++. +..+|++-|. ..||+||..
T Consensus 218 ~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~ 248 (547)
T PF11715_consen 218 ASLAVSSSEINDDTFLFTLSRDHTLRIWSLE 248 (547)
T ss_dssp EEEEE-----ETTTEEEEEETTSEEEEEETT
T ss_pred ceEEEecceeCCCCEEEEEeCCCeEEEEECC
Confidence 7788888 8888887785 779999974
No 360
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=48.73 E-value=85 Score=26.33 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=18.1
Q ss_pred eEEEecCCCcEEEeCCCCcEEE
Q 044877 34 QCFASTGDGSIVVGSLDGKIRL 55 (244)
Q Consensus 34 t~vats~~G~IavGS~dG~IRL 55 (244)
.|++.|+||+||+.+.++..=|
T Consensus 8 ~~l~WS~Dg~laV~t~~~v~IL 29 (173)
T PF12657_consen 8 NALAWSEDGQLAVATGESVHIL 29 (173)
T ss_pred cCeeECCCCCEEEEcCCeEEEE
Confidence 5899999999999888776555
No 361
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=48.55 E-value=24 Score=21.96 Aligned_cols=19 Identities=26% Similarity=0.198 Sum_probs=16.3
Q ss_pred CCCCEEEEeCC--cceEEEEe
Q 044877 82 YDGRWILGTTD--TYLILICT 100 (244)
Q Consensus 82 ~DG~~lLaT~~--~~L~L~dt 100 (244)
|||++|.+++. ++|.++|.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEEC
Confidence 79999998884 77999996
No 362
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=48.19 E-value=47 Score=34.45 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=50.4
Q ss_pred eEEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-----------C-cceEEEEe
Q 044877 34 QCFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-----------D-TYLILICT 100 (244)
Q Consensus 34 t~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-----------~-~~L~L~dt 100 (244)
|-|..||.|. +++=+.-| |-||-.....++.-+ ..--|.-|+|||+++||++=+ . ..|++||.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF---YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhc---cCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4678899997 77777666 679988765444322 234688999999999998532 1 45999998
Q ss_pred eeccCCCCcccccc
Q 044877 101 LFTDKNGTTKTGFN 114 (244)
Q Consensus 101 ~~~~~~~~~~~GF~ 114 (244)
.- |.-+-+|.
T Consensus 290 ~t----G~lkrsF~ 299 (698)
T KOG2314|consen 290 AT----GLLKRSFP 299 (698)
T ss_pred cc----cchhccee
Confidence 53 34444454
No 363
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=47.71 E-value=58 Score=33.82 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=44.0
Q ss_pred EEEecCCC-cEEEeCC-----------CCcEEEEeccccccceecCCC--CCCCeeEE-EeCCCCCEEEEeCCcceEEEE
Q 044877 35 CFASTGDG-SIVVGSL-----------DGKIRLYSSNSMRQAKTAFPG--LGSPIRYV-DVTYDGRWILGTTDTYLILIC 99 (244)
Q Consensus 35 ~vats~~G-~IavGS~-----------dG~IRLyD~~~~r~aKt~lpg--lGdPI~~v-dvS~DG~~lLaT~~~~L~L~d 99 (244)
-+.+||.. ++++=|. .-.|++||.+++...+ .++- -+-++-.| ..|.|++|++.-+-++|.+++
T Consensus 254 ~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkr-sF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyE 332 (698)
T KOG2314|consen 254 FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKR-SFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYE 332 (698)
T ss_pred eeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhc-ceeccCCCccccceEEeccCCceeEEeccceEEEEe
Confidence 34556643 3666543 2358999999986444 5664 23344443 789999999877778899988
Q ss_pred e
Q 044877 100 T 100 (244)
Q Consensus 100 t 100 (244)
+
T Consensus 333 t 333 (698)
T KOG2314|consen 333 T 333 (698)
T ss_pred c
Confidence 6
No 364
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=46.70 E-value=98 Score=30.29 Aligned_cols=69 Identities=16% Similarity=0.226 Sum_probs=45.1
Q ss_pred ceeEEEe-cCCCcEEEeCCCCcEEEEecc--ccccceecC-----CCCCCCeeEEEeC--CCCC-EEEEeCC--cceEEE
Q 044877 32 NFQCFAS-TGDGSIVVGSLDGKIRLYSSN--SMRQAKTAF-----PGLGSPIRYVDVT--YDGR-WILGTTD--TYLILI 98 (244)
Q Consensus 32 ~Ft~vat-s~~G~IavGS~dG~IRLyD~~--~~r~aKt~l-----pglGdPI~~vdvS--~DG~-~lLaT~~--~~L~L~ 98 (244)
+...++. .+.|.+++|=++-=|+-|+.. ... ..+++ ++|-+.|.+|++- +||+ |||++++ ++..+|
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~-~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy 287 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGN-DRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVY 287 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S---EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEE
T ss_pred cceEEEEecccCCEEEecCccEEEEEecCCCCCC-cceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEE
Confidence 4444444 457889999999999999984 111 11222 3477899999994 5664 8999986 678899
Q ss_pred Eee
Q 044877 99 CTL 101 (244)
Q Consensus 99 dt~ 101 (244)
|-.
T Consensus 288 ~r~ 290 (381)
T PF02333_consen 288 DRE 290 (381)
T ss_dssp ESS
T ss_pred ecC
Confidence 953
No 365
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=46.17 E-value=1.2e+02 Score=25.81 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=43.3
Q ss_pred cEEEeCCCCcEEEEeccccc-------cceecCCCCCCCeeEEEeCC-----CCCEEEEeCCcceEEEEee
Q 044877 43 SIVVGSLDGKIRLYSSNSMR-------QAKTAFPGLGSPIRYVDVTY-----DGRWILGTTDTYLILICTL 101 (244)
Q Consensus 43 ~IavGS~dG~IRLyD~~~~r-------~aKt~lpglGdPI~~vdvS~-----DG~~lLaT~~~~L~L~dt~ 101 (244)
+++.++.-|+|-+++.-... ....+| .++..|++|+.-+ +...||..+.+.|+.||..
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~ 81 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVE 81 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcc
Confidence 48999999999999863211 112233 4899999996654 5678889999999999985
No 366
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=44.92 E-value=69 Score=30.46 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=73.6
Q ss_pred EEEecCCCc-EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeeccCCCCccccc
Q 044877 35 CFASTGDGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFTDKNGTTKTGF 113 (244)
Q Consensus 35 ~vats~~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~~~~~~~~~GF 113 (244)
|-+++-.+. |++|..||.+-++|....++++..+|.....--+...-.-|.+|++.-...++..|...-. -|
T Consensus 94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~-------~~ 166 (319)
T KOG4714|consen 94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYAN-------TL 166 (319)
T ss_pred cccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeee-------cc
Confidence 334444444 9999999999999997766666556644444444455567777777655556665654311 01
Q ss_pred ccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechhhhcCCcccc
Q 044877 114 NGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNGSHECY 185 (244)
Q Consensus 114 ~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~kV~~g~~~~y 185 (244)
. |. . .|-|.+....+ + ++-+.. ..++..+.+++.+.-+-+||.+.+ ....+|
T Consensus 167 ~-------p~--~-t~~~~~~~~~~--v---~~l~~h---p~qq~~v~cgt~dg~~~l~d~rn~--~~p~S~ 218 (319)
T KOG4714|consen 167 D-------PI--K-TLIPSKKALDA--V---TALCSH---PAQQHLVCCGTDDGIVGLWDARNV--AMPVSL 218 (319)
T ss_pred c-------cc--c-ccccccccccc--c---hhhhCC---cccccEEEEecCCCeEEEEEcccc--cchHHH
Confidence 1 11 1 11122222222 1 333432 245778899999999999999998 444443
No 367
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=44.00 E-value=60 Score=31.78 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=36.7
Q ss_pred EEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT 90 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT 90 (244)
+..|..+|.+--||..+. .++.++++|--| -+|++|||+.+||.+
T Consensus 192 ~l~g~~~GRl~~YD~~tK-~~~VLld~L~F~-NGlaLS~d~sfvl~~ 236 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTK-VTKVLLDGLYFP-NGLALSPDGSFVLVA 236 (376)
T ss_pred eecCCCccceEEecCccc-chhhhhhccccc-ccccCCCCCCEEEEE
Confidence 455667899999999774 688888888766 689999999999844
No 368
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.82 E-value=99 Score=33.45 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=47.7
Q ss_pred CCceeEEEecCCC-cEEEeCCCCcEEEE----eccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877 30 GTNFQCFASTGDG-SIVVGSLDGKIRLY----SSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILICT 100 (244)
Q Consensus 30 ~~~Ft~vats~~G-~IavGS~dG~IRLy----D~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt 100 (244)
....-++..-++. .++++..+|+|=++ |..... .. ..-.+..-|.++..|||+..|+..+ .+.|+++..
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 3445555555554 49999999999999 543221 11 1223567999999999999998554 678877754
No 369
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=43.63 E-value=61 Score=29.37 Aligned_cols=65 Identities=9% Similarity=0.211 Sum_probs=44.9
Q ss_pred eEEEecCCCcEEEeCCCCcEEEEeccccc-cceecCCCCCCCeeEEEeCCCCCEEEEe----CCc---ceEEEE
Q 044877 34 QCFASTGDGSIVVGSLDGKIRLYSSNSMR-QAKTAFPGLGSPIRYVDVTYDGRWILGT----TDT---YLILIC 99 (244)
Q Consensus 34 t~vats~~G~IavGS~dG~IRLyD~~~~r-~aKt~lpglGdPI~~vdvS~DG~~lLaT----~~~---~L~L~d 99 (244)
.++++.+.+.+.++..-+.|..||..... .....++-+ ++|..+.-+.-|.||++- ..+ +||+|=
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 45666664455555667789999986322 234556766 799999999999999764 224 777753
No 370
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=43.43 E-value=40 Score=33.19 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=25.7
Q ss_pred cCCCCCCCeeEEEeCCCCCEEEEeCC--cceEEEEee
Q 044877 67 AFPGLGSPIRYVDVTYDGRWILGTTD--TYLILICTL 101 (244)
Q Consensus 67 ~lpglGdPI~~vdvS~DG~~lLaT~~--~~L~L~dt~ 101 (244)
.|+...--+.+|.++|+|+|.++| | ..|.|+|+.
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~t-DslGRV~LiD~~ 337 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVT-DSLGRVLLIDVA 337 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEE-cCCCcEEEEECC
Confidence 344444569999999999987665 5 669999985
No 371
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=42.15 E-value=43 Score=31.26 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=36.6
Q ss_pred EEEecCCCc-EEEe-CCCCc----EEEEeccccccceecCCCCCCCee-EEEeCCCCCEEEEeC
Q 044877 35 CFASTGDGS-IVVG-SLDGK----IRLYSSNSMRQAKTAFPGLGSPIR-YVDVTYDGRWILGTT 91 (244)
Q Consensus 35 ~vats~~G~-IavG-S~dG~----IRLyD~~~~r~aKt~lpglGdPI~-~vdvS~DG~~lLaT~ 91 (244)
..+.+|+|. +|.+ |..|. ||++|..+++.... ++..+-- ++..++||+.++-+.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d---~i~~~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD---GIENPKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE---EEEEEESEEEEECTTSSEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC---cccccccceEEEeCCCCEEEEEE
Confidence 568899998 6544 55555 99999977642222 2333332 399999999988664
No 372
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=42.14 E-value=38 Score=33.12 Aligned_cols=64 Identities=27% Similarity=0.210 Sum_probs=38.5
Q ss_pred EEEecCCCc--EEEeCCCCc--EEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCC--cc--eEEEEe
Q 044877 35 CFASTGDGS--IVVGSLDGK--IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTD--TY--LILICT 100 (244)
Q Consensus 35 ~vats~~G~--IavGS~dG~--IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~--~~--L~L~dt 100 (244)
.-+++|+|. +.+.+.||. |-++|..+.+.-+ +-.+.| .-++=.+||||++|+-+++ .+ |.+++.
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~ 313 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-INTSPSWSPDGSKIVFTSDRGGRPQIYLYDL 313 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-cccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence 456788888 566777776 4555665443222 111222 2226689999999997774 33 555554
No 373
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=41.97 E-value=1.6e+02 Score=28.66 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=45.2
Q ss_pred CCCCceeEEEecCCCcEEEeCCCCcEEEEecccc-----ccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEE
Q 044877 28 SRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSM-----RQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~-----r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L 97 (244)
.+...+++++..++|.+++.+..|.|..=+..+. .-.+...+..+..|+++.+.+|+..+++.-...++.
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~ 352 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLR 352 (398)
T ss_pred CCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEE
Confidence 3444588999999999888888888754333221 011111222445799999999999887766665444
No 374
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=41.12 E-value=57 Score=34.39 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=58.3
Q ss_pred cCCCceecccccccCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccc---cc-cceecCCCCCCCeeEEEeCCCCCEEE
Q 044877 14 AGAPVLNWSQGHQFSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNS---MR-QAKTAFPGLGSPIRYVDVTYDGRWIL 88 (244)
Q Consensus 14 ~~~~~~~~~~~k~Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~---~r-~aKt~lpglGdPI~~vdvS~DG~~lL 88 (244)
+-+|-+.|...-+-..+..+||++.+++|- +++|...|.|-+=-+.. .. ...+. -....+|+-||.. ++..|+
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i-l~~ds~IVQlD~~-q~~LLV 185 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI-LSEDSEIVQLDYL-QSYLLV 185 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee-eccCcceEEeecc-cceehH
Confidence 345566666655555688899999999997 99999999998766643 11 12222 2367899999875 555565
Q ss_pred EeCCcceEEEEee
Q 044877 89 GTTDTYLILICTL 101 (244)
Q Consensus 89 aT~~~~L~L~dt~ 101 (244)
||+...| |.+|.
T Consensus 186 Stl~r~~-Lc~tE 197 (726)
T KOG3621|consen 186 STLTRCI-LCQTE 197 (726)
T ss_pred hhhhhhh-eeecc
Confidence 7766655 44654
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=40.49 E-value=90 Score=29.26 Aligned_cols=71 Identities=11% Similarity=-0.043 Sum_probs=43.1
Q ss_pred CCCCceeEEEecCCCcEEEeCCC------------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe-CC-c
Q 044877 28 SRGTNFQCFASTGDGSIVVGSLD------------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT-TD-T 93 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~IavGS~d------------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT-~~-~ 93 (244)
...+-+.=+.++++|.|++|... |.+-.+|. .+. ...++.++---=-+|++||||+.+..+ +. +
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC-EEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 34455666788999999999888 43444442 222 333444422222589999999877654 44 5
Q ss_pred ceEEEEe
Q 044877 94 YLILICT 100 (244)
Q Consensus 94 ~L~L~dt 100 (244)
.|.-++.
T Consensus 186 ~i~r~~~ 192 (307)
T COG3386 186 RIHRYDL 192 (307)
T ss_pred eEEEEec
Confidence 5655553
No 376
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=39.68 E-value=1.2e+02 Score=32.90 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=35.7
Q ss_pred eeEEEecCCC-cEEEeCCCCcEEEEeccccccceecCCCCCCCeeEE-EeC---CCCCEEEEeCCcceEEEEee
Q 044877 33 FQCFASTGDG-SIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYV-DVT---YDGRWILGTTDTYLILICTL 101 (244)
Q Consensus 33 Ft~vats~~G-~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~v-dvS---~DG~~lLaT~~~~L~L~dt~ 101 (244)
|+-+++.=.| .+|+|..+|.+++||. ++|+.+-.++ .-+|-.+. -+. -||+ .|+=-.+-+-|||+.
T Consensus 629 fal~~mAwk~d~lv~GD~~GNl~~WDl-g~R~SRg~~d-~p~~ra~~l~~~~ipG~~~-~lvl~~d~~~lwdtk 699 (1062)
T KOG1912|consen 629 FALCAMAWKDDILVVGDVEGNLVVWDL-GRRQSRGVRD-SPDPRAHSLTFPQIPGDHT-TLVLELDWLPLWDTK 699 (1062)
T ss_pred HHHHhhhccCCeeEeecccCceeEEec-ccccccCccC-CCCchhhheecccCCCCce-EEEEecCcceecccc
Confidence 4444444444 4999999999999997 4454442111 22332222 221 2332 223334667778864
No 377
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=38.12 E-value=63 Score=29.92 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=39.9
Q ss_pred CceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCC-----------------CCCCeeEEEeCCCCCEEEEe-CC
Q 044877 31 TNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPG-----------------LGSPIRYVDVTYDGRWILGT-TD 92 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpg-----------------lGdPI~~vdvS~DG~~lLaT-~~ 92 (244)
........+|+|+-++=-.++.|-+++..+....+.+.+| ++.. .++-.||||++|+-. .+
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~-~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRR-SAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSS-BSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccc-cceEECCCCCEEEEEEEC
Confidence 4567888999998333335689999987654333333345 3332 568899999999844 33
Q ss_pred -cceEEEE
Q 044877 93 -TYLILIC 99 (244)
Q Consensus 93 -~~L~L~d 99 (244)
+-+..+.
T Consensus 122 ~~~v~~~~ 129 (353)
T PF00930_consen 122 EREVPEYP 129 (353)
T ss_dssp -TTS-EEE
T ss_pred CcCCceEE
Confidence 3344444
No 378
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=37.53 E-value=3.3e+02 Score=28.17 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCceeEEEecCCCc---EEEeCCCCcEEEEeccccccceecCCCCC-CCeeEEEeCCCCCEEEEeC----CcceEEEEee
Q 044877 30 GTNFQCFASTGDGS---IVVGSLDGKIRLYSSNSMRQAKTAFPGLG-SPIRYVDVTYDGRWILGTT----DTYLILICTL 101 (244)
Q Consensus 30 ~~~Ft~vats~~G~---IavGS~dG~IRLyD~~~~r~aKt~lpglG-dPI~~vdvS~DG~~lLaT~----~~~L~L~dt~ 101 (244)
.-++-++..+++|. |+-|=.=-.+-+||.+ ++-.++ +| .|=-.+-++|-|++||-+- ..-+-+||..
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr----~~~v~d-f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR----GKPVFD-FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC----CCEeEe-CCCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 34566888888884 6777777889999984 332333 33 4777789999999998542 3669999973
Q ss_pred eccCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeE
Q 044877 102 FTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFS 169 (244)
Q Consensus 102 ~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fv 169 (244)
. |.+..+++ --....|.|.+ + +|..++++|-|.+
T Consensus 345 ---------------------n-~K~i~~~~---------a~~tt~~eW~P-d--Ge~flTATTaPRl 378 (566)
T KOG2315|consen 345 ---------------------N-RKLIAKFK---------AANTTVFEWSP-D--GEYFLTATTAPRL 378 (566)
T ss_pred ---------------------c-hhhccccc---------cCCceEEEEcC-C--CcEEEEEeccccE
Confidence 1 22221111 11134899975 2 6888888887654
No 379
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.46 E-value=5.1e+02 Score=27.39 Aligned_cols=180 Identities=12% Similarity=0.075 Sum_probs=90.0
Q ss_pred CceeEEEecCCCc-EEEeCCCCcEEEEec--cc-------cc---cce-------ecCCCCCCCeeEEEeCCCC---CEE
Q 044877 31 TNFQCFASTGDGS-IVVGSLDGKIRLYSS--NS-------MR---QAK-------TAFPGLGSPIRYVDVTYDG---RWI 87 (244)
Q Consensus 31 ~~Ft~vats~~G~-IavGS~dG~IRLyD~--~~-------~r---~aK-------t~lpglGdPI~~vdvS~DG---~~l 87 (244)
....-|..+++|+ +|..+..|..=+.=- .+ ++ ..+ .+....+..|..+.+.|.+ .+|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3467788999998 888888887433211 00 00 112 1223456789999998773 555
Q ss_pred E-EeCCcceEEEEeeeccCCCCcccccccccCCCCCcceeeeeCccchhhc----CC--ccceeee--eeeeecCCCCcc
Q 044877 88 L-GTTDTYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLA----GV--NNKFHKA--QFSWVTENGKQE 158 (244)
Q Consensus 88 L-aT~~~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~----G~--~~~Ft~a--kFn~~tg~~~~E 158 (244)
+ =|++++||+||..- .. -....+.+.+.+.... |. ..+|.-. -|+|.+-.....
T Consensus 165 ~vLtsdn~lR~y~~~~--~~---------------~p~~v~~~~~~~~~~~~~~~~~~~~~slge~AV~FDfgP~~~~~~ 227 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD--PQ---------------HPWQVLSLSPGEKSSSLSSRGRSFLASLGETAVDFDFGPLDTSPK 227 (717)
T ss_pred EEEecCCEEEEEecCC--CC---------------CCeEEEEcccCcccccccCCCccccccchheeeeccccccccccc
Confidence 5 66789999999741 11 0122333332221100 10 0122222 666543222222
Q ss_pred eEEEEeeCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCccccccceecCccccCCCCCCCEEEEcCCc
Q 044877 159 RHLVATVGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIVDSRFMHDKFAVSDLPEAPLVIATPMK 233 (244)
Q Consensus 159 ~~IvtStG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv~~~f~~d~f~~~~~~~~~iiva~~~~ 233 (244)
...-...+.-.+.|-+ =||.|+-+.|-..-+|..- ++...+..-.+.-.-..+|||... +-=|+.+|.-
T Consensus 228 ~~~~~~~~~~~~~~p~-~vL~~ng~v~~~~~~l~~~-~~~~~~~~gpl~~~p~~~dnyg~d----~c~i~~l~~~ 296 (717)
T PF10168_consen 228 TLTGQKSKQEKIEWPI-FVLRENGDVYLLYTSLQDE-NSNLPKLQGPLPMQPPADDNYGLD----ACSILCLPSL 296 (717)
T ss_pred ccccccCCCCceeccE-EEEecCCCEEEEEEecccC-ccccceecCceecCCCCcccCCCc----eeeEEEecCC
Confidence 3344445555666633 3588888888655555000 123333322332222347888442 2335555543
No 380
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=37.32 E-value=65 Score=30.42 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=30.7
Q ss_pred cCCCCceeEEEecCCCc-EEEeCCCCcEEEEeccccccc
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGSLDGKIRLYSSNSMRQA 64 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS~dG~IRLyD~~~~r~a 64 (244)
+.-..-.--+..||+|. +|+-+..|.|-||+....++.
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 33344467899999999 999999999999999876643
No 381
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=36.48 E-value=47 Score=23.80 Aligned_cols=28 Identities=29% Similarity=0.606 Sum_probs=19.4
Q ss_pred ecCCCCCCCeeEEEeCCCCCEEEEeCCcc
Q 044877 66 TAFPGLGSPIRYVDVTYDGRWILGTTDTY 94 (244)
Q Consensus 66 t~lpglGdPI~~vdvS~DG~~lLaT~~~~ 94 (244)
++|. .|.||.=+..|.||+|+.+-+..+
T Consensus 21 s~l~-~gtPv~i~H~S~D~~W~fV~t~~~ 48 (54)
T PF12913_consen 21 SALH-PGTPVYILHTSRDGAWAFVQTPFY 48 (54)
T ss_dssp EEE--TT-EEEEEEE-TTSSEEEEE-SS-
T ss_pred cccC-CCCCEEEEEECCCCCEEEEecCCe
Confidence 4444 799999999999999998877644
No 382
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.38 E-value=33 Score=34.14 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=37.6
Q ss_pred EEEEeccccccceecCCCCCCCeeEEEeCCCCC-EEE-EeCCcceEEEEee
Q 044877 53 IRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGR-WIL-GTTDTYLILICTL 101 (244)
Q Consensus 53 IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~-~lL-aT~~~~L~L~dt~ 101 (244)
++..+.-+++... .||+.|.-|.+|++||..+ .++ +...++|.|+|..
T Consensus 175 v~~l~~~~fkssq-~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle 224 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ-ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE 224 (463)
T ss_pred eEEeccCCcchhh-cccccchhhhhhccCccccceeeeeccCceEEEEecc
Confidence 7777776666555 7899999999999999888 333 4456999999864
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=34.85 E-value=1.8e+02 Score=27.15 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=41.7
Q ss_pred eeEEEecCCCc--EEEeCCCC----------cEEEEeccccc-cceecCCCCCCC--eeEEEeCCCCCEEEEeC--C---
Q 044877 33 FQCFASTGDGS--IVVGSLDG----------KIRLYSSNSMR-QAKTAFPGLGSP--IRYVDVTYDGRWILGTT--D--- 92 (244)
Q Consensus 33 Ft~vats~~G~--IavGS~dG----------~IRLyD~~~~r-~aKt~lpglGdP--I~~vdvS~DG~~lLaT~--~--- 92 (244)
|++++..++|. +++...++ .|++|..-+.. .++..+.+-..+ ..++..|+||+||+.++ .
T Consensus 172 ~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~ 251 (414)
T PF02897_consen 172 FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSE 251 (414)
T ss_dssp SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSE
T ss_pred cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccC
Confidence 45588888877 45543332 27777775432 234555544444 68999999999999653 2
Q ss_pred cceEEEEee
Q 044877 93 TYLILICTL 101 (244)
Q Consensus 93 ~~L~L~dt~ 101 (244)
+.+.++|..
T Consensus 252 s~v~~~d~~ 260 (414)
T PF02897_consen 252 SEVYLLDLD 260 (414)
T ss_dssp EEEEEEECC
T ss_pred CeEEEEecc
Confidence 237777764
No 384
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=34.64 E-value=2.3e+02 Score=31.96 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=49.4
Q ss_pred eEEEecCCCc-EEE-----eCCCCcEEEEeccccccceecCCCCCCCeeEE----EeCCCCCEEEEe----CCcceEEEE
Q 044877 34 QCFASTGDGS-IVV-----GSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYV----DVTYDGRWILGT----TDTYLILIC 99 (244)
Q Consensus 34 t~vats~~G~-Iav-----GS~dG~IRLyD~~~~r~aKt~lpglGdPI~~v----dvS~DG~~lLaT----~~~~L~L~d 99 (244)
++|..-.+|. +|+ ....-.||+||+. + .|...+.|..++ +.=|.|.++.+. +++.|.++.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g-----~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE 272 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G-----ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE 272 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-c-----hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe
Confidence 4678888886 666 3333689999984 2 356667777665 555999999765 245588876
Q ss_pred eeeccCCCCcccccccccC-CCCC
Q 044877 100 TLFTDKNGTTKTGFNGRMG-NKIA 122 (244)
Q Consensus 100 t~~~~~~~~~~~GF~~~~~-~~kp 122 (244)
.+|-.-.-|.-+++ +.+|
T Consensus 273 -----rNGL~hg~f~l~~p~de~~ 291 (1265)
T KOG1920|consen 273 -----RNGLRHGEFVLPFPLDEKE 291 (1265)
T ss_pred -----cCCccccccccCCcccccc
Confidence 23333333555555 4554
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=33.94 E-value=1.2e+02 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.011 Sum_probs=25.0
Q ss_pred CCCCCeeEEEeCCCCCEEEEeC-CcceEEEEe
Q 044877 70 GLGSPIRYVDVTYDGRWILGTT-DTYLILICT 100 (244)
Q Consensus 70 glGdPI~~vdvS~DG~~lLaT~-~~~L~L~dt 100 (244)
.+..+|..++.+|....|+..+ ++.|.|+..
T Consensus 9 ~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 9 NLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 4677899999999999887444 577888775
No 386
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=33.82 E-value=2.4e+02 Score=26.14 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=51.2
Q ss_pred CCceecccccccCCCCceeEEE-ecCCCcEEEeCCCCcEEEEeccccccc-e-ecC---CCCCCCeeEEEeCCCCCEEEE
Q 044877 16 APVLNWSQGHQFSRGTNFQCFA-STGDGSIVVGSLDGKIRLYSSNSMRQA-K-TAF---PGLGSPIRYVDVTYDGRWILG 89 (244)
Q Consensus 16 ~~~~~~~~~k~Y~~~~~Ft~va-ts~~G~IavGS~dG~IRLyD~~~~r~a-K-t~l---pglGdPI~~vdvS~DG~~lLa 89 (244)
+..+.|...--...+..++..+ ...+|.|.+++.+|.|..+|..+.+.. + .++ ..+..|+..- ||+-++.
T Consensus 42 ~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g 117 (370)
T COG1520 42 SGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVG 117 (370)
T ss_pred CcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEe
Confidence 4567776542233334455553 778999999999999999999876522 1 122 2455565554 9996656
Q ss_pred eCCcceEEEEe
Q 044877 90 TTDTYLILICT 100 (244)
Q Consensus 90 T~~~~L~L~dt 100 (244)
+.+..|.-+|.
T Consensus 118 ~~~g~~y~ld~ 128 (370)
T COG1520 118 SWDGKLYALDA 128 (370)
T ss_pred cccceEEEEEC
Confidence 66664544454
No 387
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=33.15 E-value=1.1e+02 Score=30.06 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=33.7
Q ss_pred cCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEE--eCCCCCEEEEeCC
Q 044877 39 TGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVD--VTYDGRWILGTTD 92 (244)
Q Consensus 39 s~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vd--vS~DG~~lLaT~~ 92 (244)
...+.|++|+.||.|+.+|..+++..-. .+ ++.+|.+== +..||+-.+++-.
T Consensus 404 ~~g~~v~~g~~dG~l~ald~~tG~~lW~-~~-~~~~~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 404 TAGNLVFAGAADGYFRAFDATTGKELWK-FR-TPSGIQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred ecCCeEEEECCCCeEEEEECCCCceeeE-EE-CCCCceEcCEEEEeCCEEEEEEEe
Confidence 3445799999999999999988764422 22 455554322 2457776665543
No 388
>PRK13684 Ycf48-like protein; Provisional
Probab=32.61 E-value=2.5e+02 Score=26.20 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=45.9
Q ss_pred ceecccccccCCCCceeEEEecCCCcEEEeCCCCcE-EEEeccccccceecCC-CCCCCeeEEEeCCCCCEEEEeCCcce
Q 044877 18 VLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKI-RLYSSNSMRQAKTAFP-GLGSPIRYVDVTYDGRWILGTTDTYL 95 (244)
Q Consensus 18 ~~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~I-RLyD~~~~r~aKt~lp-glGdPI~~vdvS~DG~~lLaT~~~~L 95 (244)
-.+|.....=. ...|.+++..++|.+++.+..|.| +.+|.- ++.=. .++ +-..++.++.++++|+.+++.....+
T Consensus 161 G~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g-g~tW~-~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~ 237 (334)
T PRK13684 161 GKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPG-QTAWT-PHQRNSSRRLQSMGFQPDGNLWMLARGGQI 237 (334)
T ss_pred CCCceeCcCCC-cceEEEEEECCCCeEEEEeCCceEEEEcCCC-CCeEE-EeeCCCcccceeeeEcCCCCEEEEecCCEE
Confidence 45666432211 335788888998875555556655 344431 11011 112 35578999999999998887765554
Q ss_pred EE
Q 044877 96 IL 97 (244)
Q Consensus 96 ~L 97 (244)
++
T Consensus 238 ~~ 239 (334)
T PRK13684 238 RF 239 (334)
T ss_pred EE
Confidence 43
No 389
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=32.37 E-value=74 Score=31.81 Aligned_cols=53 Identities=19% Similarity=0.391 Sum_probs=33.1
Q ss_pred eEEEecCCCcEEEeCCCCcEEEEeccccccc-eecCCC--CCCCeeEEEeCCCCCEEEE
Q 044877 34 QCFASTGDGSIVVGSLDGKIRLYSSNSMRQA-KTAFPG--LGSPIRYVDVTYDGRWILG 89 (244)
Q Consensus 34 t~vats~~G~IavGS~dG~IRLyD~~~~r~a-Kt~lpg--lGdPI~~vdvS~DG~~lLa 89 (244)
.+..++..|-+++|+.+|.+|.||..+++.. +..+++ .+.||+-. .||+-.++
T Consensus 465 ~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~---~~G~qYv~ 520 (527)
T TIGR03075 465 GGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYE---QDGKQYVA 520 (527)
T ss_pred CcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEE---eCCEEEEE
Confidence 3444455556788999999999999988744 322332 34455532 47765543
No 390
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=32.19 E-value=2.2e+02 Score=25.44 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=41.3
Q ss_pred ceeEEEecCCCc-EEEeC---CCCcEEEEecc----c-cc---cceecCCCCCCCeeEEEeCCCCCEEEEeCC
Q 044877 32 NFQCFASTGDGS-IVVGS---LDGKIRLYSSN----S-MR---QAKTAFPGLGSPIRYVDVTYDGRWILGTTD 92 (244)
Q Consensus 32 ~Ft~vats~~G~-IavGS---~dG~IRLyD~~----~-~r---~aKt~lpglGdPI~~vdvS~DG~~lLaT~~ 92 (244)
.+++++.|++|. ||+=. .+|.|.+--.. + .+ ......+..+.++++++..+|+..++.+..
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 899999999998 44333 34555555321 1 01 122344566789999999999999988764
No 391
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=32.16 E-value=1.9e+02 Score=28.13 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=44.6
Q ss_pred CceeEEEecC-CCcEEEeCCCCcEEEEeccccc------------------------------------------cceec
Q 044877 31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMR------------------------------------------QAKTA 67 (244)
Q Consensus 31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r------------------------------------------~aKt~ 67 (244)
..+++|.+.+ .+++|+|-..|+|=||.-...+ +..++
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 3578888888 4789999999999998652111 11223
Q ss_pred CCCCCCCeeEEEeCCCCCEEEEeCC-cceEEEEee
Q 044877 68 FPGLGSPIRYVDVTYDGRWILGTTD-TYLILICTL 101 (244)
Q Consensus 68 lpglGdPI~~vdvS~DG~~lLaT~~-~~L~L~dt~ 101 (244)
+..--.||+.++.| |==|+.+.++ ..|.++|-+
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~R 115 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLR 115 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETT
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECC
Confidence 33335899999998 5557777775 779999963
No 392
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=31.33 E-value=2.5e+02 Score=29.92 Aligned_cols=108 Identities=11% Similarity=0.228 Sum_probs=63.2
Q ss_pred EEEeCCCCcEEEEeccccc----cc-------------e-ecCCCCCCCeeEEEeC-CCCCEEEEeCCcc--eEEEEeee
Q 044877 44 IVVGSLDGKIRLYSSNSMR----QA-------------K-TAFPGLGSPIRYVDVT-YDGRWILGTTDTY--LILICTLF 102 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r----~a-------------K-t~lpglGdPI~~vdvS-~DG~~lLaT~~~~--L~L~dt~~ 102 (244)
++++..||.|-+|.....- ++ + -+...++....|+|+. .++..++|.+.|. |.|+=--.
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 8999999999999763110 01 0 0223468899999997 4455555555433 66543221
Q ss_pred ccCCCCcccccccccCCCCCcceeeeeCccchhhcCCc-cceeeeeeeeecCCCCcceEEEEeeCCeEEEEech
Q 044877 103 TDKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVN-NKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQ 175 (244)
Q Consensus 103 ~~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~-~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~ 175 (244)
. +-+....|+|.+..+.| ++|-+..-+ . .|. +.++.+|...-+++|+|+
T Consensus 197 ~--------------------~~r~~~~~s~~~~hNIP~VSFl~~~~d--~-~G~-v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 197 V--------------------DERFYHVPSHQHSHNIPNVSFLDDDLD--P-NGH-VKVVATDISGEVWTFKIK 246 (717)
T ss_pred c--------------------ccccccccccccccCCCeeEeecCCCC--C-ccc-eEEEEEeccCcEEEEEEE
Confidence 0 11111122333444433 566665443 1 122 688999999999999995
No 393
>PRK13684 Ycf48-like protein; Provisional
Probab=30.90 E-value=2.6e+02 Score=25.98 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=46.1
Q ss_pred eecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccce-ecCCCC--CCCeeEEEeCCCCCEEEEeCCcce
Q 044877 19 LNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAK-TAFPGL--GSPIRYVDVTYDGRWILGTTDTYL 95 (244)
Q Consensus 19 ~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aK-t~lpgl--GdPI~~vdvS~DG~~lLaT~~~~L 95 (244)
..|.+.. =.+...+++++..++|.+++.+..|.+++=+.-.+..-+ ...|.. ...+.+|.+.++++.+++.-...|
T Consensus 204 ~tW~~~~-~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v 282 (334)
T PRK13684 204 TAWTPHQ-RNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTL 282 (334)
T ss_pred CeEEEee-CCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeE
Confidence 4565542 245567889999999986555677988742221222111 112322 235888999999997776655544
Q ss_pred E
Q 044877 96 I 96 (244)
Q Consensus 96 ~ 96 (244)
.
T Consensus 283 ~ 283 (334)
T PRK13684 283 L 283 (334)
T ss_pred E
Confidence 3
No 394
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=30.16 E-value=2.7e+02 Score=27.09 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=40.4
Q ss_pred eeEEEecCCCcEEEeCCCCc-EEEEecccccc-ceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEE
Q 044877 33 FQCFASTGDGSIVVGSLDGK-IRLYSSNSMRQ-AKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLIL 97 (244)
Q Consensus 33 Ft~vats~~G~IavGS~dG~-IRLyD~~~~r~-aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L 97 (244)
|..+..+++|.+++-+..|. .|.||.- ... .....| ....++++.+.+||.++|++-...|..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G-~~~W~~~~~~-~~~~l~~v~~~~dg~l~l~g~~G~l~~ 305 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG-QPYWQPHNRA-SARRIQNMGWRADGGLWLLTRGGGLYV 305 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC-CcceEEecCC-CccceeeeeEcCCCCEEEEeCCceEEE
Confidence 55667778887544445554 5667752 110 111234 466799999999999999987766543
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=30.01 E-value=1.1e+02 Score=32.40 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=34.7
Q ss_pred EecCCCcEEE-eCCCCcEEEEeccccccc-eecCC--CCCCCeeEEEeCCCCCEEE
Q 044877 37 ASTGDGSIVV-GSLDGKIRLYSSNSMRQA-KTAFP--GLGSPIRYVDVTYDGRWIL 88 (244)
Q Consensus 37 ats~~G~Iav-GS~dG~IRLyD~~~~r~a-Kt~lp--glGdPI~~vdvS~DG~~lL 88 (244)
.++..|-+.+ |+.||.+|-||..+++.. +..|| .++.|++..- .|||-.+
T Consensus 687 l~TagglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~~--~~GkQYV 740 (764)
T TIGR03074 687 LATAGGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYMG--KDGKQYV 740 (764)
T ss_pred EEEcCCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEEe--cCCEEEE
Confidence 5555566666 799999999999887743 44455 5778998851 2776443
No 396
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=29.36 E-value=54 Score=35.97 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=42.4
Q ss_pred CcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEE-----------EeCCCCCEEEEeC-CcceEEEEeeecc
Q 044877 42 GSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYV-----------DVTYDGRWILGTT-DTYLILICTLFTD 104 (244)
Q Consensus 42 G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~v-----------dvS~DG~~lLaT~-~~~L~L~dt~~~~ 104 (244)
-+|-.|-.+|.|||-.... ..+..+-+|+.-++.+ .+||||+-+++.| +.+++.|..+|.+
T Consensus 196 ~~ic~~~~~~~i~lL~~~r--a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINR--ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred ceeeeccCCCceeEeeech--HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 3688888999999865421 1122344555444433 3899999999887 6889999998853
No 397
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=29.05 E-value=2e+02 Score=26.19 Aligned_cols=62 Identities=6% Similarity=0.064 Sum_probs=36.3
Q ss_pred ceeEEEecC-CCc-EEEeCCCCcEEEEeccccccc-eecCCCCC------CCeeEEEeCCCCCEEEEeCCc
Q 044877 32 NFQCFASTG-DGS-IVVGSLDGKIRLYSSNSMRQA-KTAFPGLG------SPIRYVDVTYDGRWILGTTDT 93 (244)
Q Consensus 32 ~Ft~vats~-~G~-IavGS~dG~IRLyD~~~~r~a-Kt~lpglG------dPI~~vdvS~DG~~lLaT~~~ 93 (244)
++++++.+| .|+ ++..+....|-.+|..+.-.. ..+..+.. .--.||++.+||+..+++=.|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 589999999 777 788888889999996443112 21222211 246899999999988877555
No 398
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.73 E-value=48 Score=28.95 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=22.9
Q ss_pred eCCeEEEEechhhhcCCccccccccCCceeeeeEEEecCcccc
Q 044877 165 VGKFSVIWNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSIV 207 (244)
Q Consensus 165 tG~fvvvWn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~iv 207 (244)
+++|.|.|.++-=+...- .|.|+.|||+=.
T Consensus 77 ~nkYQVSW~~e~k~a~sG-------------~y~V~~fDEegy 106 (167)
T PF05404_consen 77 TNKYQVSWTEEHKKASSG-------------TYEVKFFDEEGY 106 (167)
T ss_pred CCceEEEEEechhhccCC-------------ceEEEEeChHHH
Confidence 489999998876555554 389999998744
No 399
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=28.61 E-value=1.3e+02 Score=28.37 Aligned_cols=44 Identities=32% Similarity=0.453 Sum_probs=30.6
Q ss_pred EEEeCCCCcEEEEeccccccce---ecCCCCCCC--eeEEEeCCCCCEEE
Q 044877 44 IVVGSLDGKIRLYSSNSMRQAK---TAFPGLGSP--IRYVDVTYDGRWIL 88 (244)
Q Consensus 44 IavGS~dG~IRLyD~~~~r~aK---t~lpglGdP--I~~vdvS~DG~~lL 88 (244)
|-.-|.||.|||=... .+.-| -..+.-|.+ +.-|++-||||..|
T Consensus 227 i~~~s~dGeirLeas~-I~lp~L~~g~~~psgS~q~v~eiCvC~nGkLfL 275 (292)
T KOG3950|consen 227 LRLESKDGEIRLEASK-IRLPKLPTGSYTPSGSRQKVFEICVCPNGKLFL 275 (292)
T ss_pred eeEeccCceEEEeece-eecccccCCCCCCCCCcceEEEEEEecCCcEEE
Confidence 6778999999996552 22222 112224555 99999999999999
No 400
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=27.45 E-value=29 Score=36.45 Aligned_cols=83 Identities=7% Similarity=0.155 Sum_probs=54.1
Q ss_pred cCCCceecccccccCCCCceeEEEecC-------------CCc-EEEeCCCCcEEEEeccccccceecCCCCCC-CeeEE
Q 044877 14 AGAPVLNWSQGHQFSRGTNFQCFASTG-------------DGS-IVVGSLDGKIRLYSSNSMRQAKTAFPGLGS-PIRYV 78 (244)
Q Consensus 14 ~~~~~~~~~~~k~Y~~~~~Ft~vats~-------------~G~-IavGS~dG~IRLyD~~~~r~aKt~lpglGd-PI~~v 78 (244)
.++|++-|.-..-|+ +||...-++. +-. +.+|..--.|.+||.+.. ++. --.+.- .+.++
T Consensus 127 nds~~~Iwdi~s~lt--vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~--~~svnTk~vqG~ 201 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLT--VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDS--VSSVNTKYVQGI 201 (783)
T ss_pred ccCCccceecccccC--CCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhh--hhhhhhhhcccc
Confidence 567777777665554 3333333332 222 667777778899998522 121 112222 67899
Q ss_pred EeCC-CCCEEEEeCCcceEEEEee
Q 044877 79 DVTY-DGRWILGTTDTYLILICTL 101 (244)
Q Consensus 79 dvS~-DG~~lLaT~~~~L~L~dt~ 101 (244)
.|.| .+.|+.+..+.-|-+||+.
T Consensus 202 tVdp~~~nY~cs~~dg~iAiwD~~ 225 (783)
T KOG1008|consen 202 TVDPFSPNYFCSNSDGDIAIWDTY 225 (783)
T ss_pred eecCCCCCceeccccCceeeccch
Confidence 9999 9999988888999999974
No 401
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.57 E-value=54 Score=24.72 Aligned_cols=30 Identities=27% Similarity=0.578 Sum_probs=23.8
Q ss_pred ceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEe
Q 044877 64 AKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICT 100 (244)
Q Consensus 64 aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt 100 (244)
+++.|. +|-.|+--|+|.||+|- ||.+|=.
T Consensus 18 cr~il~-fGl~i~rgd~sTDGkWC------yiv~wVv 47 (69)
T cd04894 18 CRIILE-FGLNITRGDDSTDGRWC------YIVFWVV 47 (69)
T ss_pred HHHHHH-hceEEEecccccCCcEE------EEEEEEe
Confidence 344444 88899999999999997 7888864
No 402
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=26.50 E-value=1.4e+02 Score=17.75 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=13.7
Q ss_pred eEEEecCCCcEEEeCC-CCcEEE
Q 044877 34 QCFASTGDGSIVVGSL-DGKIRL 55 (244)
Q Consensus 34 t~vats~~G~IavGS~-dG~IRL 55 (244)
..+|.+++|+|+++.. ...|+.
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 4678888888666543 334443
No 403
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=25.51 E-value=3e+02 Score=22.47 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=38.4
Q ss_pred CCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeE---EEeCCCCCEEEEeC
Q 044877 28 SRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRY---VDVTYDGRWILGTT 91 (244)
Q Consensus 28 ~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~---vdvS~DG~~lLaT~ 91 (244)
......++++....++++-|-..|.|.+||... |.=+ .. -...+++ .|+..||..=|.+.
T Consensus 40 ~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~-RlWR--iK-SK~~~~~~~~~D~~gdG~~eLI~G 102 (111)
T PF14783_consen 40 TETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ-RLWR--IK-SKNQVTSMAFYDINGDGVPELIVG 102 (111)
T ss_pred ecccceEEEEEcCCCEEEEEecCCEEEEEeCcc-eeee--ec-cCCCeEEEEEEcCCCCCceEEEEE
Confidence 344557788888888899999999999999732 2111 11 1222444 46677777666554
No 404
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=24.75 E-value=85 Score=32.13 Aligned_cols=59 Identities=7% Similarity=0.125 Sum_probs=41.9
Q ss_pred CCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEe
Q 044877 29 RGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGT 90 (244)
Q Consensus 29 ~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT 90 (244)
-+.+...+..||.|........--|.+|+.....+.. --...-|..++|||+|+||..=
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~---~~~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLV---RFRHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhhee---eeecCCceecccCcccceeeee
Confidence 4445668999999985555666668999986543221 1234479999999999999753
No 405
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=24.30 E-value=1.5e+02 Score=24.28 Aligned_cols=52 Identities=27% Similarity=0.419 Sum_probs=29.5
Q ss_pred CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCC--CEEEEeC
Q 044877 31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDG--RWILGTT 91 (244)
Q Consensus 31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG--~~lLaT~ 91 (244)
.+..|+-++| +|..+..+. +.+++- . .++.|-|.+|..|.||-|| .|..|+-
T Consensus 7 ~~v~S~I~~P~~~~~v~~~~-~~v~i~-------G-~A~~g~g~~I~rVEVS~DgG~tW~~A~l 61 (131)
T PF03404_consen 7 MPVNSVITSPSDGETVKAGD-GTVTIR-------G-YAWSGGGRGIARVEVSTDGGKTWQEATL 61 (131)
T ss_dssp ---EEEEEESBTTEEEESES-EEEEEE-------E-EEE-STT--EEEEEEESSTTSSEEE-EE
T ss_pred cCCCEEEEecCCCCEEccCC-cEEEEE-------E-EEEeCCCcceEEEEEEeCCCCCcEEeEe
Confidence 4566777777 666333322 444442 2 2567888899999999996 5887763
No 406
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=23.46 E-value=4e+02 Score=31.25 Aligned_cols=142 Identities=19% Similarity=0.206 Sum_probs=89.5
Q ss_pred CCCceecccccccCCCCceeEEEecCCCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCE-EEEeCC-
Q 044877 15 GAPVLNWSQGHQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRW-ILGTTD- 92 (244)
Q Consensus 15 ~~~~~~~~~~k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~-lLaT~~- 92 (244)
++-...|... .=+...+|+.+++..+|.++.=+.+..+-|=+.. .. ...=+-|.+.++++||+- +|+..+
T Consensus 388 d~~~~~Wk~~-~~~~d~~~S~Ls~qgdG~lYAk~~~~l~nLSs~~--~~-----~~~v~~l~sfSv~~~g~vA~L~~~d~ 459 (1774)
T PF11725_consen 388 DPNTARWKPP-PDKSDTPFSSLSRQGDGKLYAKDDDTLVNLSSGQ--MS-----EAEVDKLKSFSVAPDGTVAMLTGKDG 459 (1774)
T ss_pred ccccceecCC-CCcccchhhhhcccCCCceEecCCCceeecCCCC--cc-----hhhhhhcccccccCCCceeeeecCCC
Confidence 3445677742 3356788999999999999885555445444331 11 123468999999999998 556665
Q ss_pred cceEEEEeeeccCCCCcccccccccCCCCCccee-eeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEE
Q 044877 93 TYLILICTLFTDKNGTTKTGFNGRMGNKIAAPRL-LKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVI 171 (244)
Q Consensus 93 ~~L~L~dt~~~~~~~~~~~GF~~~~~~~kp~pr~-L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvv 171 (244)
..++||+.-..+ .-|.|++ +.|+-+| |.. .+. .|.. ..++..|+=+..-+|.
T Consensus 460 q~~qL~~m~~~~---------------a~~~p~~~~~L~L~d----G~a-~A~--~VgL-----s~drLFvADseGkLYs 512 (1774)
T PF11725_consen 460 QTLQLHDMSPVD---------------APPTPRKTKTLQLAD----GKA-QAQ--SVGL-----SNDRLFVADSEGKLYS 512 (1774)
T ss_pred cceeeeccCccc---------------cccCccceeeeeccC----Cch-hhh--heee-----cCCeEEEEeCCCCEEe
Confidence 568888864321 1144544 4444343 333 222 3332 1457888888888888
Q ss_pred EechhhhcCCccccccccCCceeeeeEEEecCccc
Q 044877 172 WNFQQVKNGSHECYQNQEGLKSCYCYKIVLKDDSI 206 (244)
Q Consensus 172 Wn~~kV~~g~~~~y~~~~~l~~~~~Y~i~~~~e~i 206 (244)
=++.+...+.. .++.+++..
T Consensus 513 a~l~~~~~~~~---------------~l~~~p~~~ 532 (1774)
T PF11725_consen 513 ADLPAAQDNEP---------------KLKLMPEPA 532 (1774)
T ss_pred cccccccCCCc---------------ceEeccccc
Confidence 88888886654 467776665
No 407
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=6.4e+02 Score=23.80 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred cCCCCceeEEEecCCCc-EEEeC-CCCcEEEEeccccccceec---CCCCCCCeeEEEeCCCCCEEEEeCC-c---ceEE
Q 044877 27 FSRGTNFQCFASTGDGS-IVVGS-LDGKIRLYSSNSMRQAKTA---FPGLGSPIRYVDVTYDGRWILGTTD-T---YLIL 97 (244)
Q Consensus 27 Y~~~~~Ft~vats~~G~-IavGS-~dG~IRLyD~~~~r~aKt~---lpglGdPI~~vdvS~DG~~lLaT~~-~---~L~L 97 (244)
+....+ .-++.+++|. +++.. .++.|-++|..+....... .-+.+.---.+.+++||+++-++.+ + .+..
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 333345 7899999998 55554 8999999997543211000 1235556678999999998877765 3 6777
Q ss_pred EEeeeccCCCCcccccccccC-CCCCcceeeeeCccch
Q 044877 98 ICTLFTDKNGTTKTGFNGRMG-NKIAAPRLLKLTPLDS 134 (244)
Q Consensus 98 ~dt~~~~~~~~~~~GF~~~~~-~~kp~pr~L~L~Pe~~ 134 (244)
+|+.. ..-+...+. ..- .|+-+.+.|.-.
T Consensus 236 id~~~-------~~v~~~~~~~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 236 IDTAT-------GNVTATDLPVGSG-APRGVAVDPAGK 265 (381)
T ss_pred EeCCC-------ceEEEeccccccC-CCCceeECCCCC
Confidence 77642 112332222 232 566677777543
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=22.02 E-value=3.7e+02 Score=25.29 Aligned_cols=66 Identities=17% Similarity=0.183 Sum_probs=31.4
Q ss_pred CceeEEEecCCCcEEEeCCCCcE-EEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCc-ceEEEE
Q 044877 31 TNFQCFASTGDGSIVVGSLDGKI-RLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDT-YLILIC 99 (244)
Q Consensus 31 ~~Ft~vats~~G~IavGS~dG~I-RLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~-~L~L~d 99 (244)
..|...++.+ +.+.+....|.| |.=|. ++.=+....+....|..+..++||+||++.... -++-||
T Consensus 105 s~~~i~~l~~-~~~~l~~~~G~iy~T~Dg--G~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~ 172 (302)
T PF14870_consen 105 SPFGITALGD-GSAELAGDRGAIYRTTDG--GKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWD 172 (302)
T ss_dssp -EEEEEEEET-TEEEEEETT--EEEESST--TSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-
T ss_pred CeeEEEEcCC-CcEEEEcCCCcEEEeCCC--CCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEec
Confidence 4455555544 354433444543 33332 221122233455679999999999999888874 466766
No 409
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=21.63 E-value=1.5e+02 Score=29.17 Aligned_cols=69 Identities=9% Similarity=0.199 Sum_probs=0.0
Q ss_pred CceeEEEecC-CCcEEEeCCCCcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeC-CcceEEEE
Q 044877 31 TNFQCFASTG-DGSIVVGSLDGKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTT-DTYLILIC 99 (244)
Q Consensus 31 ~~Ft~vats~-~G~IavGS~dG~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~-~~~L~L~d 99 (244)
...+|.+.++ ++-+.+|+.|-.|-+||.-+.+-....+-||.+-+..+.--+=-+-+.+.- +.-|.+||
T Consensus 198 ~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 198 GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred cceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
No 410
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=21.37 E-value=1.9e+02 Score=17.83 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=16.7
Q ss_pred ceeEEEecCCCc--EEEeCCC--CcEEEE
Q 044877 32 NFQCFASTGDGS--IVVGSLD--GKIRLY 56 (244)
Q Consensus 32 ~Ft~vats~~G~--IavGS~d--G~IRLy 56 (244)
.-.+.+.||+|. +.+...+ |.-.||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 356889999997 4555555 676666
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=21.10 E-value=7e+02 Score=23.44 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=41.2
Q ss_pred cccCCCCceeEEEecCCCcEEEeCCCCcEEEEecc--ccccceecCC--CCCCCeeEEEeCCCCCEEEEeCCcce
Q 044877 25 HQFSRGTNFQCFASTGDGSIVVGSLDGKIRLYSSN--SMRQAKTAFP--GLGSPIRYVDVTYDGRWILGTTDTYL 95 (244)
Q Consensus 25 k~Y~~~~~Ft~vats~~G~IavGS~dG~IRLyD~~--~~r~aKt~lp--glGdPI~~vdvS~DG~~lLaT~~~~L 95 (244)
++..+...++++.++++|.+......|.|+.=|.. ...=.+-..| .-|.-|..|+..+++...+++-...|
T Consensus 181 ~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 181 HNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp EE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E
T ss_pred EccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE
Confidence 34456677999999999998777799999998821 1111111123 34556899999988887777766654
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=20.72 E-value=2e+02 Score=31.87 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=41.1
Q ss_pred ecCCCc-EEEeCCCCcEEEEecc-----ccccceecCCCCCCCeeEEEeCC-------CCCEEE--EeCC-cc-eEEEEe
Q 044877 38 STGDGS-IVVGSLDGKIRLYSSN-----SMRQAKTAFPGLGSPIRYVDVTY-------DGRWIL--GTTD-TY-LILICT 100 (244)
Q Consensus 38 ts~~G~-IavGS~dG~IRLyD~~-----~~r~aKt~lpglGdPI~~vdvS~-------DG~~lL--aT~~-~~-L~L~dt 100 (244)
.++||. +|..+.||.+|.|-.- ..||.-..-|..|.|-.+.-... -|+|++ .|++ +. +.+|.+
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 899999 8999999999988762 33444333354555554432222 256665 5556 44 999876
Q ss_pred ee
Q 044877 101 LF 102 (244)
Q Consensus 101 ~~ 102 (244)
..
T Consensus 323 a~ 324 (1283)
T KOG1916|consen 323 AP 324 (1283)
T ss_pred cc
Confidence 43
No 413
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.60 E-value=1.1e+03 Score=25.61 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=72.1
Q ss_pred EEEecCCCc-EEEeCCC----------CcEEEEeccccccceecCCCCCCCeeEEEeCCCCCEEEEeCCcceEEEEeeec
Q 044877 35 CFASTGDGS-IVVGSLD----------GKIRLYSSNSMRQAKTAFPGLGSPIRYVDVTYDGRWILGTTDTYLILICTLFT 103 (244)
Q Consensus 35 ~vats~~G~-IavGS~d----------G~IRLyD~~~~r~aKt~lpglGdPI~~vdvS~DG~~lLaT~~~~L~L~dt~~~ 103 (244)
=+++-+.|- ||+-=.+ =.||+|+..++-.+++.+. +| +++++-+|.|...|+.+=+..+.+++..-
T Consensus 37 ~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~-~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g- 113 (829)
T KOG2280|consen 37 YFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWK-HG-ELIGMGWSDDEELICVQKDGTVHVYGLLG- 113 (829)
T ss_pred EEEecccCCceEEEecccccccccccceeEEEEeccccchHHHHhc-CC-CeeeecccCCceEEEEeccceEEEeecch-
Confidence 445555443 7776555 2499999976544444333 55 89999999999999888888899988642
Q ss_pred cCCCCcccccccccCCCCCcceeeeeCccchhhcCCccceeeeeeeeecCCCCcceEEEEeeCCeEEEEechh-hhcCCc
Q 044877 104 DKNGTTKTGFNGRMGNKIAAPRLLKLTPLDSHLAGVNNKFHKAQFSWVTENGKQERHLVATVGKFSVIWNFQQ-VKNGSH 182 (244)
Q Consensus 104 ~~~~~~~~GF~~~~~~~kp~pr~L~L~Pe~~~~~G~~~~Ft~akFn~~tg~~~~E~~IvtStG~fvvvWn~~k-V~~g~~ 182 (244)
+..-..+.||+. ..++. .-.+|-. +--.+.|-.|.+..+-++++ .+...+
T Consensus 114 e~ie~~svg~e~------~~~~I-----------------~ec~~f~------~GVavlt~~g~v~~i~~~~~~~~~~~~ 164 (829)
T KOG2280|consen 114 EFIESNSVGFES------QMSDI-----------------VECRFFH------NGVAVLTVSGQVILINGVEEPKLRKMP 164 (829)
T ss_pred hhhccccccccc------ccCce-----------------eEEEEec------CceEEEecCCcEEEEcCCCcchhhhCC
Confidence 211111233331 11111 1234431 23577788888998888888 555555
Q ss_pred c
Q 044877 183 E 183 (244)
Q Consensus 183 ~ 183 (244)
+
T Consensus 165 d 165 (829)
T KOG2280|consen 165 D 165 (829)
T ss_pred C
Confidence 4
Done!