BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044878
         (368 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
          Intracellular Mla Immune Receptors Defines A Minimal
          Functional Module For Triggering Cell Death
          Length = 115

 Score = 34.7 bits (78), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 17 QEGVRSKLKKWEETLKTIEAVLIDAEE--KQLTDRAVKLWLDDLRDLAYDAEDILDEFAT 74
           +GV+  ++   + L++  A LI   E  ++  D   KLW D++R+L+Y  ED++D+F  
Sbjct: 21 HKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80

Query: 75 EA 76
          + 
Sbjct: 81 QV 82


>pdb|1S4D|A Chain A, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|B Chain B, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|D Chain D, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|E Chain E, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|F Chain F, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|G Chain G, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|H Chain H, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|I Chain I, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|J Chain J, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|K Chain K, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|L Chain L, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
 pdb|1S4D|M Chain M, Crystal Structure Analysis Of The S-adenosyl-l-methionine
           Dependent Uroporphyrinogen-iii C-methyltransferase Sumt
          Length = 280

 Score = 31.6 bits (70), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 11/70 (15%)

Query: 113 PKIKEISSRLEELCKRRAVLGLEKIAGGEPAVYGRDEDKDRMLDMVLKNDPSDAANFRVI 172
           PK ++IS RL EL   RA   + ++ GG+P V+GR  ++   L +V    P     FR++
Sbjct: 76  PKQRDISLRLVELA--RAGNRVLRLKGGDPFVFGRGGEE--ALTLVEHQVP-----FRIV 126

Query: 173 PLV--GMGGI 180
           P +  G+GG+
Sbjct: 127 PGITAGIGGL 136


>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
          Length = 178

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEP 200
           + +VG GG+ K+AL+ +   D+  E +EP
Sbjct: 10  VIMVGSGGVGKSALTLQFMYDEFVEDYEP 38


>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
           Mortierella Vinacea
          Length = 397

 Score = 28.5 bits (62), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 257 KYELWQALKSPFMAGAPGSRIIVTTRSMVV 286
            Y +W ALKSP + G   + I  TT+ +++
Sbjct: 257 HYTIWAALKSPLILGNDVTNITNTTKEIIM 286


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,555,893
Number of Sequences: 62578
Number of extensions: 352971
Number of successful extensions: 915
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 913
Number of HSP's gapped (non-prelim): 5
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)