Query 044878
Match_columns 368
No_of_seqs 276 out of 2163
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:37:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044878.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044878hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-49 8.3E-54 401.4 31.6 356 2-366 8-381 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.5E-37 5.3E-42 283.4 12.8 213 147-366 1-221 (287)
3 PLN03210 Resistant to P. syrin 100.0 2.9E-31 6.3E-36 282.8 25.2 215 141-366 183-413 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.5 1.2E-11 2.6E-16 112.1 22.9 179 169-351 43-242 (269)
5 PF01637 Arch_ATPase: Archaeal 99.5 1.1E-12 2.3E-17 116.1 13.9 192 144-346 1-233 (234)
6 PRK00411 cdc6 cell division co 99.4 3.8E-11 8.3E-16 115.0 18.8 206 141-349 29-257 (394)
7 PF05729 NACHT: NACHT domain 99.3 1.9E-11 4.1E-16 102.2 12.1 142 170-314 1-163 (166)
8 PRK04841 transcriptional regul 99.3 2.4E-10 5.1E-15 121.0 18.9 193 141-354 13-232 (903)
9 TIGR02928 orc1/cdc6 family rep 99.3 4.1E-10 9E-15 106.8 18.2 202 141-344 14-243 (365)
10 PRK06893 DNA replication initi 99.2 4.1E-10 9E-15 99.4 15.5 156 169-351 39-207 (229)
11 TIGR00635 ruvB Holliday juncti 99.2 3.9E-10 8.4E-15 104.2 13.5 180 142-350 4-204 (305)
12 PRK00080 ruvB Holliday junctio 99.2 3.7E-10 8.1E-15 105.3 13.3 179 142-349 25-224 (328)
13 PRK13342 recombination factor 99.1 3.1E-09 6.6E-14 102.2 15.1 180 142-350 12-199 (413)
14 TIGR03420 DnaA_homol_Hda DnaA 99.0 1E-08 2.2E-13 90.4 13.8 170 148-350 23-204 (226)
15 COG2256 MGS1 ATPase related to 99.0 2.3E-09 4.9E-14 98.3 9.7 173 141-344 29-209 (436)
16 PF13401 AAA_22: AAA domain; P 99.0 4.5E-09 9.8E-14 84.3 9.5 113 168-283 3-125 (131)
17 PRK08727 hypothetical protein; 98.9 1E-07 2.2E-12 84.5 17.5 170 170-366 42-230 (233)
18 PRK14963 DNA polymerase III su 98.9 8.2E-09 1.8E-13 100.8 11.5 193 142-344 14-214 (504)
19 PRK12402 replication factor C 98.9 7.4E-08 1.6E-12 90.3 17.5 196 142-349 15-228 (337)
20 PRK14961 DNA polymerase III su 98.9 1.2E-07 2.6E-12 89.6 18.9 190 142-347 16-220 (363)
21 PRK12323 DNA polymerase III su 98.9 7.1E-08 1.5E-12 95.0 16.2 195 142-347 16-225 (700)
22 PRK09087 hypothetical protein; 98.9 2.5E-07 5.5E-12 81.3 18.0 159 169-365 44-220 (226)
23 TIGR02903 spore_lon_C ATP-depe 98.9 8.8E-07 1.9E-11 89.1 24.0 199 141-350 153-398 (615)
24 PRK05564 DNA polymerase III su 98.9 1.6E-07 3.5E-12 87.1 17.5 176 143-345 5-188 (313)
25 PRK07003 DNA polymerase III su 98.9 1.2E-07 2.5E-12 94.8 17.2 189 142-346 16-220 (830)
26 PF05496 RuvB_N: Holliday junc 98.9 4.5E-08 9.7E-13 84.1 12.5 182 141-352 23-226 (233)
27 cd00009 AAA The AAA+ (ATPases 98.8 3.7E-08 8E-13 80.0 11.4 124 145-285 1-131 (151)
28 PRK00440 rfc replication facto 98.8 3.2E-07 6.9E-12 85.3 18.6 182 142-346 17-202 (319)
29 PTZ00112 origin recognition co 98.8 1.5E-07 3.2E-12 94.7 16.4 210 141-352 754-987 (1164)
30 PRK06645 DNA polymerase III su 98.8 3.5E-07 7.5E-12 89.2 18.5 192 142-346 21-228 (507)
31 PRK14949 DNA polymerase III su 98.8 2.4E-07 5.2E-12 94.3 17.6 189 142-347 16-220 (944)
32 PRK14960 DNA polymerase III su 98.8 3.2E-07 7E-12 90.6 17.8 190 142-347 15-219 (702)
33 PF13191 AAA_16: AAA ATPase do 98.8 1.2E-08 2.7E-13 86.8 6.9 48 143-193 1-48 (185)
34 PRK14962 DNA polymerase III su 98.8 6.5E-07 1.4E-11 86.9 19.2 200 142-364 14-239 (472)
35 PRK08084 DNA replication initi 98.8 3.8E-07 8.3E-12 80.8 16.1 169 169-364 45-233 (235)
36 PLN03025 replication factor C 98.8 4.7E-07 1E-11 84.2 17.3 183 142-345 13-198 (319)
37 PRK13341 recombination factor 98.8 2.2E-07 4.7E-12 94.4 15.7 172 142-342 28-212 (725)
38 PF13173 AAA_14: AAA domain 98.8 4.5E-08 9.8E-13 78.3 8.7 120 169-306 2-127 (128)
39 PRK14957 DNA polymerase III su 98.8 5.7E-07 1.2E-11 88.3 18.0 179 142-347 16-221 (546)
40 PRK05642 DNA replication initi 98.7 5.1E-07 1.1E-11 80.0 15.7 156 169-351 45-212 (234)
41 TIGR02397 dnaX_nterm DNA polym 98.7 1.4E-06 2.9E-11 82.4 19.7 179 142-348 14-219 (355)
42 PRK08903 DnaA regulatory inact 98.7 4.6E-07 9.9E-12 80.0 14.7 154 168-352 41-204 (227)
43 PRK14951 DNA polymerase III su 98.7 8E-07 1.7E-11 88.5 17.7 193 142-347 16-225 (618)
44 PRK04195 replication factor C 98.7 7.2E-07 1.6E-11 87.6 17.0 184 142-349 14-204 (482)
45 PRK14956 DNA polymerase III su 98.7 1.1E-07 2.5E-12 91.0 10.7 191 142-348 18-223 (484)
46 PRK05896 DNA polymerase III su 98.7 8.6E-07 1.9E-11 87.4 16.7 192 142-349 16-223 (605)
47 PRK07994 DNA polymerase III su 98.7 7.6E-07 1.7E-11 88.9 16.5 191 142-348 16-221 (647)
48 cd01128 rho_factor Transcripti 98.7 7E-08 1.5E-12 85.8 8.3 87 169-255 16-114 (249)
49 PRK14964 DNA polymerase III su 98.7 1.1E-06 2.5E-11 85.1 17.1 179 142-347 13-217 (491)
50 PRK14958 DNA polymerase III su 98.7 1.6E-06 3.4E-11 85.1 18.2 183 142-347 16-220 (509)
51 PRK14955 DNA polymerase III su 98.7 5.9E-07 1.3E-11 85.9 14.9 196 142-346 16-227 (397)
52 PRK07940 DNA polymerase III su 98.7 1.1E-06 2.3E-11 83.5 16.4 188 143-347 6-213 (394)
53 PF00308 Bac_DnaA: Bacterial d 98.7 1.5E-06 3.2E-11 76.1 15.9 189 141-349 8-210 (219)
54 PRK08691 DNA polymerase III su 98.7 1.4E-06 3E-11 86.9 17.4 191 142-348 16-221 (709)
55 PRK09112 DNA polymerase III su 98.6 1.5E-06 3.3E-11 81.3 16.6 194 141-348 22-241 (351)
56 PTZ00202 tuzin; Provisional 98.6 2.7E-06 6E-11 79.9 17.8 164 137-311 257-431 (550)
57 PRK09376 rho transcription ter 98.6 7.1E-08 1.5E-12 89.6 7.3 85 170-254 170-266 (416)
58 PRK07471 DNA polymerase III su 98.6 3.5E-06 7.6E-11 79.3 18.9 195 141-348 18-239 (365)
59 KOG2028 ATPase related to the 98.6 3.9E-07 8.5E-12 82.6 11.7 158 167-342 160-331 (554)
60 PRK14950 DNA polymerase III su 98.6 1.3E-06 2.8E-11 87.6 16.4 192 142-348 16-222 (585)
61 TIGR00678 holB DNA polymerase 98.6 2.9E-06 6.3E-11 72.6 16.3 150 169-343 14-187 (188)
62 PRK14969 DNA polymerase III su 98.6 3.5E-06 7.6E-11 83.2 18.8 176 142-344 16-217 (527)
63 KOG0989 Replication factor C, 98.6 3.8E-07 8.2E-12 81.0 10.4 177 142-339 36-222 (346)
64 COG1474 CDC6 Cdc6-related prot 98.6 4.6E-06 1E-10 78.4 18.4 204 141-347 16-238 (366)
65 PRK07764 DNA polymerase III su 98.6 2.7E-06 5.9E-11 87.6 18.1 189 142-346 15-220 (824)
66 PRK14087 dnaA chromosomal repl 98.6 3.3E-06 7.3E-11 81.8 17.2 166 169-348 141-320 (450)
67 PRK09111 DNA polymerase III su 98.6 4E-06 8.7E-11 83.6 17.9 194 142-348 24-234 (598)
68 COG2909 MalT ATP-dependent tra 98.6 2.9E-06 6.2E-11 85.0 16.6 196 141-354 18-240 (894)
69 TIGR00362 DnaA chromosomal rep 98.5 4.5E-06 9.7E-11 80.3 17.0 158 169-343 136-306 (405)
70 PRK14959 DNA polymerase III su 98.5 5.4E-06 1.2E-10 82.2 17.4 194 142-351 16-225 (624)
71 PRK06620 hypothetical protein; 98.5 6.7E-06 1.4E-10 71.7 16.1 155 170-364 45-213 (214)
72 PRK14970 DNA polymerase III su 98.5 7E-06 1.5E-10 77.9 17.7 179 142-344 17-206 (367)
73 TIGR01242 26Sp45 26S proteasom 98.5 5.9E-07 1.3E-11 85.1 10.1 180 141-341 121-328 (364)
74 PF05621 TniB: Bacterial TniB 98.5 1.1E-05 2.4E-10 72.6 17.3 202 141-346 33-260 (302)
75 PRK14952 DNA polymerase III su 98.5 1.4E-05 3.1E-10 79.4 18.9 192 142-349 13-222 (584)
76 PRK07133 DNA polymerase III su 98.4 1.3E-05 2.8E-10 80.8 18.0 188 142-346 18-218 (725)
77 PRK14953 DNA polymerase III su 98.4 2.6E-05 5.7E-10 76.2 19.7 180 142-348 16-221 (486)
78 CHL00181 cbbX CbbX; Provisiona 98.4 2.7E-05 5.9E-10 71.0 18.5 134 170-316 60-211 (287)
79 PRK14954 DNA polymerase III su 98.4 1.3E-05 2.9E-10 80.1 17.2 192 142-342 16-223 (620)
80 PRK08451 DNA polymerase III su 98.4 3.3E-05 7.1E-10 75.8 19.5 190 142-347 14-218 (535)
81 COG3899 Predicted ATPase [Gene 98.4 4.2E-06 9E-11 87.1 13.9 202 144-354 2-267 (849)
82 PRK14965 DNA polymerase III su 98.4 3E-05 6.6E-10 77.5 19.3 190 142-347 16-221 (576)
83 TIGR00767 rho transcription te 98.4 1.2E-06 2.6E-11 81.9 8.7 85 170-254 169-265 (415)
84 TIGR02881 spore_V_K stage V sp 98.4 9.2E-06 2E-10 73.3 14.2 136 167-315 40-192 (261)
85 TIGR03345 VI_ClpV1 type VI sec 98.4 4.2E-06 9.2E-11 87.1 13.4 148 141-313 186-362 (852)
86 PRK14948 DNA polymerase III su 98.4 3.5E-05 7.5E-10 77.5 19.2 194 142-349 16-224 (620)
87 TIGR02880 cbbX_cfxQ probable R 98.4 1.1E-05 2.5E-10 73.4 14.3 132 171-315 60-209 (284)
88 PRK14088 dnaA chromosomal repl 98.3 3.5E-05 7.6E-10 74.6 17.7 156 169-340 130-298 (440)
89 PHA02544 44 clamp loader, smal 98.3 1.3E-05 2.8E-10 74.4 14.3 147 142-311 21-170 (316)
90 PRK11331 5-methylcytosine-spec 98.3 2E-06 4.2E-11 81.8 8.7 104 142-257 175-285 (459)
91 PRK14971 DNA polymerase III su 98.3 4.6E-05 1E-09 76.6 18.8 177 142-346 17-221 (614)
92 PRK06305 DNA polymerase III su 98.3 3.7E-05 8.1E-10 74.6 17.6 179 142-347 17-223 (451)
93 TIGR02639 ClpA ATP-dependent C 98.3 5.7E-06 1.2E-10 85.3 12.7 155 142-314 182-358 (731)
94 PRK00149 dnaA chromosomal repl 98.3 2E-05 4.3E-10 76.8 15.8 157 169-343 148-318 (450)
95 PRK10787 DNA-binding ATP-depen 98.3 3.9E-05 8.5E-10 79.1 18.3 164 141-314 321-506 (784)
96 PRK06647 DNA polymerase III su 98.3 6.5E-05 1.4E-09 74.7 18.6 190 142-347 16-220 (563)
97 PRK14086 dnaA chromosomal repl 98.3 3.9E-05 8.5E-10 75.9 16.6 133 170-316 315-461 (617)
98 TIGR00763 lon ATP-dependent pr 98.3 0.00014 3.1E-09 75.5 21.4 164 141-314 319-505 (775)
99 PRK05563 DNA polymerase III su 98.3 8.1E-05 1.8E-09 74.2 18.7 189 142-346 16-219 (559)
100 PRK12422 chromosomal replicati 98.3 3.4E-05 7.3E-10 74.7 15.5 134 169-316 141-286 (445)
101 PRK03992 proteasome-activating 98.2 7E-06 1.5E-10 78.3 10.1 180 141-341 130-337 (389)
102 COG0466 Lon ATP-dependent Lon 98.2 8.6E-05 1.9E-09 73.4 17.1 163 141-315 322-509 (782)
103 PRK08116 hypothetical protein; 98.2 8.2E-06 1.8E-10 73.7 9.3 104 170-284 115-221 (268)
104 PRK07399 DNA polymerase III su 98.2 0.0001 2.2E-09 68.1 16.3 193 143-348 5-222 (314)
105 CHL00095 clpC Clp protease ATP 98.2 1.3E-05 2.8E-10 83.6 11.3 151 142-312 179-352 (821)
106 PRK11034 clpA ATP-dependent Cl 98.1 2.6E-05 5.6E-10 79.9 12.6 157 142-314 186-362 (758)
107 PF00004 AAA: ATPase family as 98.1 1.3E-05 2.8E-10 64.0 8.3 96 172-283 1-111 (132)
108 PRK05707 DNA polymerase III su 98.1 0.00014 2.9E-09 67.6 15.7 165 168-347 21-203 (328)
109 PF05673 DUF815: Protein of un 98.1 0.00016 3.6E-09 63.2 15.0 122 141-286 26-153 (249)
110 KOG2543 Origin recognition com 98.1 6.8E-05 1.5E-09 68.9 13.1 163 141-313 5-192 (438)
111 COG3903 Predicted ATPase [Gene 98.1 5.6E-06 1.2E-10 76.8 6.2 181 167-354 12-196 (414)
112 TIGR02639 ClpA ATP-dependent C 98.1 0.00016 3.5E-09 74.6 17.6 166 141-314 453-662 (731)
113 TIGR03346 chaperone_ClpB ATP-d 98.1 6.4E-05 1.4E-09 78.8 14.8 155 142-314 173-349 (852)
114 KOG2227 Pre-initiation complex 98.1 0.00013 2.9E-09 68.7 15.2 206 141-352 149-373 (529)
115 PRK10865 protein disaggregatio 98.1 0.00054 1.2E-08 71.8 21.2 137 141-283 567-720 (857)
116 COG2255 RuvB Holliday junction 98.0 0.00011 2.4E-09 65.0 12.9 177 142-348 26-224 (332)
117 COG0542 clpA ATP-binding subun 98.0 0.00038 8.2E-09 70.6 18.4 124 141-271 490-620 (786)
118 CHL00095 clpC Clp protease ATP 98.0 0.00049 1.1E-08 72.0 20.0 137 141-283 508-661 (821)
119 PRK10865 protein disaggregatio 98.0 0.0001 2.2E-09 77.2 14.8 155 142-314 178-354 (857)
120 COG0593 DnaA ATPase involved i 98.0 0.00022 4.8E-09 67.3 15.1 159 141-315 87-258 (408)
121 PF14516 AAA_35: AAA-like doma 98.0 0.00053 1.1E-08 64.0 16.9 198 141-354 10-246 (331)
122 smart00382 AAA ATPases associa 98.0 3.4E-05 7.5E-10 61.7 8.0 86 170-257 3-91 (148)
123 PRK08181 transposase; Validate 97.9 3.4E-05 7.4E-10 69.4 8.2 100 171-284 108-209 (269)
124 COG3267 ExeA Type II secretory 97.9 0.0011 2.5E-08 57.9 17.1 177 167-349 49-247 (269)
125 PRK06871 DNA polymerase III su 97.9 8.7E-05 1.9E-09 68.5 10.8 173 151-344 11-200 (325)
126 PRK08058 DNA polymerase III su 97.9 0.00036 7.7E-09 65.1 14.8 158 144-313 7-181 (329)
127 COG1373 Predicted ATPase (AAA+ 97.9 0.00023 5E-09 68.0 13.6 117 171-308 39-161 (398)
128 PRK08118 topology modulation p 97.9 6.6E-06 1.4E-10 68.9 2.6 33 171-203 3-37 (167)
129 PRK06526 transposase; Provisio 97.9 2.9E-05 6.3E-10 69.4 6.9 99 170-284 99-201 (254)
130 PRK12377 putative replication 97.9 2.4E-05 5.1E-10 69.6 5.8 101 170-283 102-205 (248)
131 PF13177 DNA_pol3_delta2: DNA 97.9 0.00042 9.1E-09 57.7 13.0 121 146-285 1-143 (162)
132 PRK07952 DNA replication prote 97.9 0.00011 2.5E-09 65.1 10.1 103 169-283 99-204 (244)
133 KOG2004 Mitochondrial ATP-depe 97.9 0.00088 1.9E-08 66.4 16.7 104 141-254 410-515 (906)
134 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00012 2.5E-09 76.5 11.5 137 141-283 565-718 (852)
135 PTZ00361 26 proteosome regulat 97.9 9.7E-05 2.1E-09 71.0 10.0 157 142-314 183-367 (438)
136 TIGR03346 chaperone_ClpB ATP-d 97.9 0.00013 2.8E-09 76.6 11.7 137 141-283 564-717 (852)
137 PRK08939 primosomal protein Dn 97.8 0.00012 2.5E-09 67.4 9.7 122 146-283 135-260 (306)
138 TIGR00602 rad24 checkpoint pro 97.8 0.00018 3.9E-09 72.1 11.6 51 141-192 83-133 (637)
139 PF01695 IstB_IS21: IstB-like 97.8 2.9E-05 6.3E-10 65.7 5.2 99 170-283 48-149 (178)
140 PRK08769 DNA polymerase III su 97.8 0.0016 3.6E-08 60.1 16.9 177 150-347 12-208 (319)
141 PTZ00454 26S protease regulato 97.8 0.00013 2.8E-09 69.6 9.9 180 142-342 145-352 (398)
142 PRK06921 hypothetical protein; 97.8 9.2E-05 2E-09 66.8 8.5 99 169-283 117-224 (266)
143 TIGR03689 pup_AAA proteasome A 97.8 0.00018 3.8E-09 70.4 10.9 162 142-314 182-378 (512)
144 PRK06090 DNA polymerase III su 97.8 0.0018 3.9E-08 59.8 16.9 173 151-348 12-202 (319)
145 PF02562 PhoH: PhoH-like prote 97.8 8.9E-05 1.9E-09 63.7 7.8 129 145-285 3-157 (205)
146 PRK09183 transposase/IS protei 97.8 0.00012 2.5E-09 65.9 8.4 100 170-283 103-205 (259)
147 TIGR02640 gas_vesic_GvpN gas v 97.8 0.0013 2.8E-08 59.3 15.2 137 171-313 23-197 (262)
148 PRK07993 DNA polymerase III su 97.7 0.0022 4.7E-08 59.8 16.6 179 149-345 9-202 (334)
149 PRK07261 topology modulation p 97.7 0.00018 3.8E-09 60.5 8.6 34 171-204 2-37 (171)
150 PF00158 Sigma54_activat: Sigm 97.7 0.00019 4.1E-09 60.0 8.4 131 144-283 1-143 (168)
151 TIGR01241 FtsH_fam ATP-depende 97.7 0.00075 1.6E-08 66.7 13.7 152 169-341 88-260 (495)
152 PF04665 Pox_A32: Poxvirus A32 97.7 5.5E-05 1.2E-09 66.5 5.1 37 169-206 13-49 (241)
153 PRK10536 hypothetical protein; 97.7 0.00038 8.2E-09 61.6 10.0 131 143-285 56-214 (262)
154 TIGR02902 spore_lonB ATP-depen 97.7 0.00067 1.5E-08 67.4 13.0 167 142-314 65-276 (531)
155 PRK06964 DNA polymerase III su 97.7 0.0028 6.1E-08 59.1 16.3 91 244-346 132-224 (342)
156 CHL00176 ftsH cell division pr 97.7 0.0009 1.9E-08 67.6 13.9 177 142-339 183-386 (638)
157 PRK12608 transcription termina 97.7 0.00026 5.6E-09 66.1 9.3 99 150-253 119-229 (380)
158 PRK11034 clpA ATP-dependent Cl 97.6 0.00051 1.1E-08 70.6 10.8 120 141-269 457-582 (758)
159 COG2812 DnaX DNA polymerase II 97.5 0.00083 1.8E-08 65.4 11.2 161 142-314 16-191 (515)
160 PRK04132 replication factor C 97.5 0.0044 9.6E-08 64.1 16.9 157 177-349 574-733 (846)
161 smart00763 AAA_PrkA PrkA AAA d 97.5 8.3E-05 1.8E-09 69.0 4.1 52 142-193 51-102 (361)
162 COG0470 HolB ATPase involved i 97.5 0.0012 2.7E-08 61.3 11.9 124 143-283 2-148 (325)
163 PF10443 RNA12: RNA12 protein; 97.5 0.019 4.1E-07 54.5 19.1 114 244-358 148-289 (431)
164 PF07728 AAA_5: AAA domain (dy 97.5 0.00014 3E-09 58.8 4.3 87 172-268 2-89 (139)
165 PRK06835 DNA replication prote 97.5 0.00024 5.2E-09 65.9 6.3 102 170-283 184-288 (329)
166 PF13207 AAA_17: AAA domain; P 97.4 0.00011 2.5E-09 57.7 3.4 22 171-192 1-22 (121)
167 PF14532 Sigma54_activ_2: Sigm 97.4 0.00017 3.6E-09 58.4 4.4 106 145-283 1-109 (138)
168 KOG0991 Replication factor C, 97.4 0.0035 7.5E-08 54.2 12.2 46 142-193 27-72 (333)
169 PF07693 KAP_NTPase: KAP famil 97.4 0.0069 1.5E-07 56.3 15.7 43 148-193 2-44 (325)
170 COG2607 Predicted ATPase (AAA+ 97.4 0.0023 5.1E-08 55.4 11.1 105 143-271 61-167 (287)
171 PRK11889 flhF flagellar biosyn 97.4 0.0015 3.3E-08 61.4 10.8 101 167-269 239-347 (436)
172 PRK08699 DNA polymerase III su 97.4 0.0038 8.3E-08 58.0 13.5 70 244-313 113-184 (325)
173 CHL00195 ycf46 Ycf46; Provisio 97.4 0.003 6.5E-08 61.8 13.2 159 142-316 228-407 (489)
174 KOG0741 AAA+-type ATPase [Post 97.4 0.0053 1.2E-07 59.0 14.1 160 167-353 536-718 (744)
175 TIGR02237 recomb_radB DNA repa 97.4 0.00063 1.4E-08 59.1 7.6 49 167-217 10-58 (209)
176 PRK06696 uridine kinase; Valid 97.3 0.00025 5.4E-09 62.4 4.6 43 147-192 3-45 (223)
177 TIGR01243 CDC48 AAA family ATP 97.3 0.0045 9.8E-08 64.2 14.5 179 142-341 453-657 (733)
178 COG1875 NYN ribonuclease and A 97.3 0.0023 5E-08 58.8 10.6 128 147-285 229-389 (436)
179 cd01120 RecA-like_NTPases RecA 97.3 0.0012 2.6E-08 54.4 8.2 39 171-210 1-39 (165)
180 COG1222 RPT1 ATP-dependent 26S 97.3 0.0051 1.1E-07 56.5 12.2 188 143-352 152-372 (406)
181 PRK15429 formate hydrogenlyase 97.3 0.0039 8.4E-08 64.2 13.0 134 142-284 376-521 (686)
182 PRK04296 thymidine kinase; Pro 97.3 0.00085 1.9E-08 57.4 6.8 111 170-285 3-117 (190)
183 TIGR03499 FlhF flagellar biosy 97.2 0.0017 3.7E-08 59.1 9.0 86 168-253 193-281 (282)
184 TIGR01243 CDC48 AAA family ATP 97.2 0.0042 9.2E-08 64.4 12.9 179 142-341 178-381 (733)
185 KOG1514 Origin recognition com 97.2 0.014 3.1E-07 58.0 15.6 207 141-349 395-623 (767)
186 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0031 6.7E-08 55.8 10.3 87 167-254 17-125 (235)
187 COG1484 DnaC DNA replication p 97.2 0.0016 3.5E-08 58.3 8.4 78 170-262 106-185 (254)
188 PRK11608 pspF phage shock prot 97.2 0.0014 3.1E-08 61.0 8.4 134 142-283 6-150 (326)
189 TIGR01817 nifA Nif-specific re 97.2 0.0033 7.1E-08 62.8 11.4 133 141-283 195-340 (534)
190 PRK12724 flagellar biosynthesi 97.2 0.0024 5.3E-08 60.6 9.7 25 168-192 222-246 (432)
191 cd01131 PilT Pilus retraction 97.2 0.00077 1.7E-08 58.1 5.8 111 170-288 2-113 (198)
192 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0013 2.8E-08 59.1 7.3 51 170-221 70-122 (274)
193 PRK13695 putative NTPase; Prov 97.2 0.00061 1.3E-08 57.4 4.8 23 171-193 2-24 (174)
194 PRK14722 flhF flagellar biosyn 97.1 0.0018 3.8E-08 61.0 8.3 87 168-254 136-225 (374)
195 KOG0735 AAA+-type ATPase [Post 97.1 0.0035 7.5E-08 62.3 10.4 155 168-340 430-608 (952)
196 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.00093 2E-08 58.2 6.0 118 169-290 29-160 (213)
197 cd01393 recA_like RecA is a b 97.1 0.0029 6.2E-08 55.6 9.1 49 167-216 17-71 (226)
198 PRK09361 radB DNA repair and r 97.1 0.0026 5.6E-08 56.0 8.8 47 167-215 21-67 (225)
199 PF13604 AAA_30: AAA domain; P 97.1 0.0022 4.8E-08 55.1 8.2 104 169-283 18-130 (196)
200 KOG2228 Origin recognition com 97.1 0.0062 1.3E-07 55.5 11.0 171 141-314 23-219 (408)
201 PRK05022 anaerobic nitric oxid 97.1 0.006 1.3E-07 60.5 12.3 135 141-284 186-332 (509)
202 PRK05541 adenylylsulfate kinas 97.1 0.0021 4.6E-08 54.2 7.7 37 167-204 5-41 (176)
203 PRK15455 PrkA family serine pr 97.1 0.00038 8.3E-09 68.1 3.2 50 143-192 77-126 (644)
204 cd03282 ABC_MSH4_euk MutS4 hom 97.1 0.0016 3.4E-08 56.4 6.7 118 169-292 29-159 (204)
205 PHA02244 ATPase-like protein 97.1 0.0046 9.9E-08 57.7 10.0 97 172-283 122-230 (383)
206 COG1223 Predicted ATPase (AAA+ 97.1 0.0037 7.9E-08 54.9 8.7 157 142-314 121-297 (368)
207 KOG0731 AAA+-type ATPase conta 97.1 0.013 2.8E-07 59.4 13.8 183 143-345 312-522 (774)
208 cd03238 ABC_UvrA The excision 97.1 0.0064 1.4E-07 51.2 10.1 117 169-298 21-161 (176)
209 TIGR02974 phageshock_pspF psp 97.0 0.0023 5E-08 59.6 8.0 157 144-310 1-183 (329)
210 PRK05703 flhF flagellar biosyn 97.0 0.0094 2E-07 57.5 12.2 85 169-254 221-309 (424)
211 PRK07667 uridine kinase; Provi 97.0 0.001 2.2E-08 57.1 5.1 38 151-192 3-40 (193)
212 PTZ00301 uridine kinase; Provi 97.0 0.00096 2.1E-08 57.9 4.8 24 169-192 3-26 (210)
213 cd01124 KaiC KaiC is a circadi 97.0 0.0032 7E-08 53.4 7.8 44 172-218 2-45 (187)
214 cd03247 ABCC_cytochrome_bd The 97.0 0.0089 1.9E-07 50.5 10.2 23 170-192 29-51 (178)
215 cd01121 Sms Sms (bacterial rad 96.9 0.0059 1.3E-07 57.7 9.9 83 168-254 81-168 (372)
216 COG1066 Sms Predicted ATP-depe 96.9 0.0051 1.1E-07 57.5 9.1 81 170-255 94-179 (456)
217 PF03969 AFG1_ATPase: AFG1-lik 96.9 0.0065 1.4E-07 57.2 10.0 82 167-259 60-142 (362)
218 PF00448 SRP54: SRP54-type pro 96.9 0.0054 1.2E-07 52.7 8.6 85 169-254 1-93 (196)
219 KOG0744 AAA+-type ATPase [Post 96.9 0.018 4E-07 52.2 12.0 39 169-207 177-218 (423)
220 KOG0738 AAA+-type ATPase [Post 96.9 0.0032 7E-08 58.3 7.4 34 10-43 12-45 (491)
221 cd01394 radB RadB. The archaea 96.9 0.0055 1.2E-07 53.6 8.8 44 167-211 17-60 (218)
222 TIGR02012 tigrfam_recA protein 96.9 0.0026 5.7E-08 58.6 6.9 82 167-254 53-143 (321)
223 KOG1051 Chaperone HSP104 and r 96.9 0.016 3.4E-07 60.1 13.0 120 141-269 561-685 (898)
224 PRK13531 regulatory ATPase Rav 96.9 0.0023 4.9E-08 61.9 6.6 154 142-313 20-193 (498)
225 PRK12727 flagellar biosynthesi 96.9 0.0052 1.1E-07 60.0 9.1 26 168-193 349-374 (559)
226 PRK05480 uridine/cytidine kina 96.9 0.001 2.2E-08 57.8 3.7 26 167-192 4-29 (209)
227 PF13238 AAA_18: AAA domain; P 96.9 0.00092 2E-08 52.8 3.2 21 172-192 1-21 (129)
228 KOG2035 Replication factor C, 96.8 0.01 2.2E-07 52.7 9.6 188 144-351 15-232 (351)
229 cd03285 ABC_MSH2_euk MutS2 hom 96.8 0.00063 1.4E-08 59.7 2.3 173 168-354 29-220 (222)
230 cd03223 ABCD_peroxisomal_ALDP 96.8 0.0068 1.5E-07 50.6 8.5 112 169-287 27-151 (166)
231 TIGR01069 mutS2 MutS2 family p 96.8 0.0011 2.3E-08 68.6 4.3 182 169-364 322-517 (771)
232 PF00485 PRK: Phosphoribulokin 96.8 0.00096 2.1E-08 57.3 3.4 23 171-193 1-23 (194)
233 COG0464 SpoVK ATPases of the A 96.8 0.025 5.5E-07 55.9 13.8 133 167-315 274-424 (494)
234 PRK12723 flagellar biosynthesi 96.8 0.014 3.1E-07 55.3 11.4 101 168-269 173-281 (388)
235 COG4608 AppF ABC-type oligopep 96.8 0.0082 1.8E-07 53.3 9.0 122 169-292 39-178 (268)
236 TIGR01650 PD_CobS cobaltochela 96.8 0.036 7.7E-07 51.1 13.5 160 141-314 44-233 (327)
237 KOG0733 Nuclear AAA ATPase (VC 96.8 0.003 6.6E-08 61.6 6.7 98 142-255 190-293 (802)
238 TIGR00235 udk uridine kinase. 96.8 0.0011 2.5E-08 57.4 3.6 26 167-192 4-29 (207)
239 cd02025 PanK Pantothenate kina 96.8 0.0048 1E-07 54.1 7.5 22 171-192 1-22 (220)
240 TIGR02858 spore_III_AA stage I 96.8 0.014 2.9E-07 52.8 10.5 123 150-288 97-233 (270)
241 PRK08233 hypothetical protein; 96.8 0.0011 2.5E-08 56.0 3.5 24 169-192 3-26 (182)
242 COG1618 Predicted nucleotide k 96.8 0.0014 3.1E-08 53.3 3.6 33 169-201 5-37 (179)
243 cd03216 ABC_Carb_Monos_I This 96.8 0.0043 9.3E-08 51.6 6.8 111 170-288 27-146 (163)
244 KOG0730 AAA+-type ATPase [Post 96.8 0.0071 1.5E-07 59.7 9.0 56 142-198 434-496 (693)
245 PRK06067 flagellar accessory p 96.8 0.015 3.1E-07 51.5 10.5 49 167-218 23-71 (234)
246 cd00983 recA RecA is a bacter 96.8 0.0036 7.8E-08 57.7 6.7 82 167-254 53-143 (325)
247 PF08423 Rad51: Rad51; InterP 96.8 0.0093 2E-07 53.5 9.2 85 168-253 37-142 (256)
248 COG1419 FlhF Flagellar GTP-bin 96.8 0.012 2.6E-07 55.3 10.1 103 168-270 202-309 (407)
249 PRK09270 nucleoside triphospha 96.8 0.0061 1.3E-07 53.8 8.0 26 167-192 31-56 (229)
250 PRK05973 replicative DNA helic 96.8 0.016 3.4E-07 51.2 10.3 144 168-317 63-227 (237)
251 PRK09354 recA recombinase A; P 96.7 0.0044 9.5E-08 57.7 7.2 82 167-254 58-148 (349)
252 cd03115 SRP The signal recogni 96.7 0.015 3.2E-07 48.8 10.0 23 171-193 2-24 (173)
253 COG0542 clpA ATP-binding subun 96.7 0.0067 1.5E-07 61.8 8.9 152 142-313 170-345 (786)
254 cd03214 ABC_Iron-Siderophores_ 96.7 0.0066 1.4E-07 51.4 7.7 117 169-289 25-163 (180)
255 KOG0733 Nuclear AAA ATPase (VC 96.7 0.024 5.2E-07 55.6 12.0 155 169-341 545-718 (802)
256 PRK00771 signal recognition pa 96.7 0.012 2.6E-07 56.7 10.1 26 168-193 94-119 (437)
257 cd01125 repA Hexameric Replica 96.7 0.017 3.7E-07 51.3 10.5 138 171-308 3-198 (239)
258 TIGR00554 panK_bact pantothena 96.7 0.01 2.2E-07 54.1 9.0 26 167-192 60-85 (290)
259 cd03228 ABCC_MRP_Like The MRP 96.7 0.0092 2E-07 50.0 8.3 24 169-192 28-51 (171)
260 PF13671 AAA_33: AAA domain; P 96.7 0.0015 3.3E-08 52.8 3.4 22 171-192 1-22 (143)
261 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.026 5.5E-07 45.9 10.6 99 170-289 27-132 (144)
262 PRK06547 hypothetical protein; 96.7 0.0027 6E-08 53.3 4.9 27 167-193 13-39 (172)
263 KOG2170 ATPase of the AAA+ sup 96.7 0.0082 1.8E-07 53.8 8.0 111 143-269 83-203 (344)
264 PF06309 Torsin: Torsin; Inte 96.7 0.018 3.8E-07 45.2 8.9 51 143-193 26-77 (127)
265 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0075 1.6E-07 50.9 7.5 104 169-289 25-137 (177)
266 PRK06762 hypothetical protein; 96.6 0.0017 3.7E-08 54.1 3.4 24 169-192 2-25 (166)
267 PLN03187 meiotic recombination 96.6 0.02 4.3E-07 53.5 10.6 59 167-226 124-187 (344)
268 PF03205 MobB: Molybdopterin g 96.6 0.0028 6E-08 51.3 4.4 39 170-208 1-39 (140)
269 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.02 4.3E-07 50.8 10.3 49 167-218 19-67 (237)
270 cd02019 NK Nucleoside/nucleoti 96.6 0.0016 3.5E-08 45.7 2.6 22 171-192 1-22 (69)
271 PRK12726 flagellar biosynthesi 96.6 0.02 4.2E-07 53.8 10.3 88 167-255 204-296 (407)
272 COG0563 Adk Adenylate kinase a 96.6 0.004 8.7E-08 52.5 5.4 23 171-193 2-24 (178)
273 TIGR02239 recomb_RAD51 DNA rep 96.6 0.016 3.6E-07 53.6 9.9 57 167-224 94-155 (316)
274 TIGR02238 recomb_DMC1 meiotic 96.6 0.011 2.5E-07 54.5 8.8 58 167-225 94-156 (313)
275 PLN00020 ribulose bisphosphate 96.6 0.0055 1.2E-07 57.0 6.6 27 167-193 146-172 (413)
276 PRK05439 pantothenate kinase; 96.6 0.016 3.6E-07 53.2 9.6 26 167-192 84-109 (311)
277 PRK10820 DNA-binding transcrip 96.6 0.01 2.2E-07 59.0 8.7 152 142-303 204-379 (520)
278 TIGR01360 aden_kin_iso1 adenyl 96.5 0.002 4.3E-08 54.8 3.3 25 168-192 2-26 (188)
279 PRK14974 cell division protein 96.5 0.025 5.4E-07 52.7 10.6 99 167-267 138-247 (336)
280 COG1102 Cmk Cytidylate kinase 96.5 0.0036 7.8E-08 51.0 4.3 43 171-226 2-45 (179)
281 PLN03186 DNA repair protein RA 96.5 0.02 4.4E-07 53.4 10.0 87 167-254 121-228 (342)
282 PRK14723 flhF flagellar biosyn 96.5 0.022 4.8E-07 58.3 11.0 25 169-193 185-209 (767)
283 PRK08533 flagellar accessory p 96.5 0.013 2.8E-07 51.7 8.4 49 168-219 23-71 (230)
284 PRK11823 DNA repair protein Ra 96.5 0.018 3.8E-07 56.1 9.9 83 168-254 79-166 (446)
285 TIGR00390 hslU ATP-dependent p 96.5 0.007 1.5E-07 57.4 6.8 52 142-193 12-71 (441)
286 PF08298 AAA_PrkA: PrkA AAA do 96.5 0.003 6.4E-08 58.3 4.3 52 141-192 60-111 (358)
287 TIGR01818 ntrC nitrogen regula 96.5 0.028 6.1E-07 55.1 11.4 159 142-310 134-318 (463)
288 TIGR00416 sms DNA repair prote 96.5 0.024 5.3E-07 55.2 10.7 98 150-255 79-181 (454)
289 TIGR02329 propionate_PrpR prop 96.5 0.0097 2.1E-07 58.9 8.1 133 142-284 212-358 (526)
290 COG0468 RecA RecA/RadA recombi 96.5 0.012 2.6E-07 53.0 8.0 87 167-255 58-152 (279)
291 KOG1969 DNA replication checkp 96.5 0.014 3.1E-07 58.2 9.0 88 167-268 324-411 (877)
292 PF00006 ATP-synt_ab: ATP synt 96.5 0.011 2.3E-07 51.5 7.4 50 170-222 16-66 (215)
293 PHA00729 NTP-binding motif con 96.5 0.0042 9.1E-08 54.1 4.8 25 168-192 16-40 (226)
294 cd03243 ABC_MutS_homologs The 96.5 0.0044 9.5E-08 53.6 5.0 23 170-192 30-52 (202)
295 COG0572 Udk Uridine kinase [Nu 96.5 0.0026 5.7E-08 54.8 3.4 26 167-192 6-31 (218)
296 PRK03839 putative kinase; Prov 96.5 0.0023 5E-08 54.1 3.1 22 171-192 2-23 (180)
297 PRK00409 recombination and DNA 96.5 0.0024 5.2E-08 66.2 3.7 175 168-364 326-522 (782)
298 cd03246 ABCC_Protease_Secretio 96.4 0.011 2.3E-07 49.7 7.0 23 170-192 29-51 (173)
299 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.02 4.4E-07 50.7 8.9 22 170-191 31-52 (254)
300 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.0088 1.9E-07 49.3 6.2 114 170-285 3-139 (159)
301 TIGR01425 SRP54_euk signal rec 96.4 0.048 1E-06 52.3 12.0 26 167-192 98-123 (429)
302 PRK05917 DNA polymerase III su 96.4 0.077 1.7E-06 48.2 12.6 121 150-284 5-135 (290)
303 cd02023 UMPK Uridine monophosp 96.4 0.0021 4.6E-08 55.3 2.6 22 171-192 1-22 (198)
304 KOG0734 AAA+-type ATPase conta 96.4 0.016 3.5E-07 55.9 8.5 96 143-255 305-407 (752)
305 TIGR02655 circ_KaiC circadian 96.4 0.012 2.6E-07 58.0 7.9 84 167-254 261-363 (484)
306 PF03308 ArgK: ArgK protein; 96.4 0.008 1.7E-07 53.1 5.9 61 150-214 14-75 (266)
307 COG0467 RAD55 RecA-superfamily 96.4 0.0085 1.8E-07 54.0 6.4 50 167-219 21-70 (260)
308 PRK06995 flhF flagellar biosyn 96.4 0.026 5.6E-07 55.0 10.0 25 169-193 256-280 (484)
309 cd01122 GP4d_helicase GP4d_hel 96.4 0.048 1E-06 49.3 11.4 51 169-221 30-80 (271)
310 PRK15115 response regulator Gl 96.4 0.031 6.8E-07 54.4 10.8 134 142-284 134-279 (444)
311 PF00910 RNA_helicase: RNA hel 96.4 0.0024 5.2E-08 49.1 2.4 22 172-193 1-22 (107)
312 PRK04040 adenylate kinase; Pro 96.3 0.0035 7.6E-08 53.5 3.5 24 169-192 2-25 (188)
313 PF01583 APS_kinase: Adenylyls 96.3 0.0052 1.1E-07 50.4 4.2 25 169-193 2-26 (156)
314 PTZ00035 Rad51 protein; Provis 96.3 0.041 8.9E-07 51.4 10.8 58 167-225 116-178 (337)
315 PRK15424 propionate catabolism 96.3 0.014 3E-07 57.8 8.0 135 142-283 219-372 (538)
316 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0057 1.2E-07 48.8 4.3 41 149-193 6-46 (133)
317 PRK11388 DNA-binding transcrip 96.3 0.0099 2.1E-07 60.8 7.1 131 142-283 325-466 (638)
318 KOG0743 AAA+-type ATPase [Post 96.3 0.1 2.3E-06 49.6 13.1 23 170-192 236-258 (457)
319 COG2884 FtsE Predicted ATPase 96.3 0.037 8E-07 46.6 9.0 48 244-291 155-204 (223)
320 smart00534 MUTSac ATPase domai 96.3 0.0058 1.3E-07 52.0 4.6 116 171-291 1-129 (185)
321 PRK06217 hypothetical protein; 96.3 0.0079 1.7E-07 51.1 5.4 23 171-193 3-25 (183)
322 PF07724 AAA_2: AAA domain (Cd 96.3 0.004 8.6E-08 52.2 3.5 89 169-268 3-103 (171)
323 TIGR02322 phosphon_PhnN phosph 96.3 0.0034 7.3E-08 53.0 3.1 24 170-193 2-25 (179)
324 PRK05201 hslU ATP-dependent pr 96.3 0.01 2.3E-07 56.3 6.5 52 141-192 14-73 (443)
325 PRK14721 flhF flagellar biosyn 96.3 0.027 5.8E-07 54.0 9.4 25 168-192 190-214 (420)
326 PRK00131 aroK shikimate kinase 96.3 0.0037 8.1E-08 52.3 3.3 24 169-192 4-27 (175)
327 cd01129 PulE-GspE PulE/GspE Th 96.3 0.017 3.7E-07 52.0 7.7 105 169-286 80-186 (264)
328 TIGR00382 clpX endopeptidase C 96.3 0.044 9.5E-07 52.5 10.7 52 141-192 76-139 (413)
329 PTZ00088 adenylate kinase 1; P 96.2 0.005 1.1E-07 54.2 4.0 22 171-192 8-29 (229)
330 PRK00625 shikimate kinase; Pro 96.2 0.0036 7.9E-08 52.6 2.9 22 171-192 2-23 (173)
331 COG0194 Gmk Guanylate kinase [ 96.2 0.0062 1.3E-07 50.9 4.2 24 169-192 4-27 (191)
332 PRK10751 molybdopterin-guanine 96.2 0.0043 9.3E-08 51.9 3.3 27 167-193 4-30 (173)
333 PF00625 Guanylate_kin: Guanyl 96.2 0.0057 1.2E-07 51.9 4.2 36 169-205 2-37 (183)
334 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.0032 6.9E-08 53.4 2.6 22 171-192 1-22 (183)
335 PRK10733 hflB ATP-dependent me 96.2 0.06 1.3E-06 55.0 12.1 129 170-314 186-335 (644)
336 TIGR03263 guanyl_kin guanylate 96.2 0.0035 7.7E-08 52.9 2.8 23 170-192 2-24 (180)
337 COG1703 ArgK Putative periplas 96.2 0.0088 1.9E-07 53.7 5.3 64 151-218 37-101 (323)
338 PF12775 AAA_7: P-loop contain 96.2 0.0097 2.1E-07 53.9 5.7 34 152-192 23-56 (272)
339 PRK00889 adenylylsulfate kinas 96.2 0.0049 1.1E-07 51.9 3.6 27 167-193 2-28 (175)
340 cd02024 NRK1 Nicotinamide ribo 96.2 0.0034 7.5E-08 53.3 2.6 22 171-192 1-22 (187)
341 PRK14738 gmk guanylate kinase; 96.2 0.0047 1E-07 53.5 3.5 26 167-192 11-36 (206)
342 TIGR03600 phage_DnaB phage rep 96.2 0.43 9.3E-06 46.2 17.4 52 169-223 194-246 (421)
343 COG4088 Predicted nucleotide k 96.2 0.019 4E-07 48.9 6.7 23 170-192 2-24 (261)
344 COG1428 Deoxynucleoside kinase 96.2 0.0045 9.8E-08 52.8 3.2 24 169-192 4-27 (216)
345 TIGR01420 pilT_fam pilus retra 96.1 0.014 2.9E-07 54.9 6.7 109 169-287 122-233 (343)
346 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.0072 1.6E-07 52.9 4.5 117 169-290 31-160 (222)
347 PRK05636 replicative DNA helic 96.1 0.7 1.5E-05 45.7 18.8 52 169-223 265-317 (505)
348 KOG1532 GTPase XAB1, interacts 96.1 0.0058 1.3E-07 54.0 3.8 60 167-227 17-87 (366)
349 PRK05342 clpX ATP-dependent pr 96.1 0.022 4.8E-07 54.7 8.1 52 141-192 70-131 (412)
350 PRK12597 F0F1 ATP synthase sub 96.1 0.016 3.4E-07 56.1 7.1 84 170-253 144-246 (461)
351 PRK10867 signal recognition pa 96.1 0.024 5.1E-07 54.7 8.2 26 167-192 98-123 (433)
352 PF07726 AAA_3: ATPase family 96.1 0.0059 1.3E-07 48.0 3.4 27 172-199 2-28 (131)
353 cd03217 ABC_FeS_Assembly ABC-t 96.1 0.019 4.1E-07 49.5 7.0 24 169-192 26-49 (200)
354 KOG0924 mRNA splicing factor A 96.1 0.035 7.7E-07 55.0 9.3 115 168-287 370-513 (1042)
355 PRK10923 glnG nitrogen regulat 96.1 0.056 1.2E-06 53.1 11.1 135 142-284 138-283 (469)
356 cd03280 ABC_MutS2 MutS2 homolo 96.1 0.0082 1.8E-07 51.8 4.6 21 170-190 29-49 (200)
357 cd02020 CMPK Cytidine monophos 96.1 0.0041 8.8E-08 50.4 2.6 22 171-192 1-22 (147)
358 cd02028 UMPK_like Uridine mono 96.1 0.004 8.7E-08 52.7 2.6 22 171-192 1-22 (179)
359 PF08433 KTI12: Chromatin asso 96.1 0.018 3.8E-07 52.0 6.9 24 170-193 2-25 (270)
360 cd02021 GntK Gluconate kinase 96.1 0.0042 9.1E-08 50.8 2.6 22 171-192 1-22 (150)
361 cd00227 CPT Chloramphenicol (C 96.1 0.0048 1E-07 51.9 3.0 23 170-192 3-25 (175)
362 PF06745 KaiC: KaiC; InterPro 96.1 0.014 3E-07 51.3 6.1 84 167-253 17-124 (226)
363 PRK00300 gmk guanylate kinase; 96.1 0.0051 1.1E-07 53.1 3.2 25 168-192 4-28 (205)
364 PF04548 AIG1: AIG1 family; I 96.1 0.082 1.8E-06 46.0 10.8 22 172-193 3-24 (212)
365 PRK03846 adenylylsulfate kinas 96.1 0.0063 1.4E-07 52.4 3.7 26 167-192 22-47 (198)
366 KOG0728 26S proteasome regulat 96.0 0.19 4E-06 44.2 12.5 156 143-314 147-331 (404)
367 TIGR00959 ffh signal recogniti 96.0 0.032 6.9E-07 53.7 8.7 26 167-192 97-122 (428)
368 COG5192 BMS1 GTP-binding prote 96.0 0.02 4.3E-07 55.5 7.1 27 167-193 67-93 (1077)
369 PRK08972 fliI flagellum-specif 96.0 0.022 4.7E-07 54.6 7.4 81 170-253 163-261 (444)
370 PF03193 DUF258: Protein of un 96.0 0.01 2.2E-07 49.0 4.5 36 148-192 23-58 (161)
371 PRK13765 ATP-dependent proteas 96.0 0.011 2.3E-07 59.8 5.6 72 142-222 31-102 (637)
372 COG3640 CooC CO dehydrogenase 96.0 0.011 2.4E-07 51.2 4.9 23 171-193 2-24 (255)
373 PF00154 RecA: recA bacterial 96.0 0.021 4.5E-07 52.7 6.9 83 167-255 51-142 (322)
374 PRK04328 hypothetical protein; 96.0 0.04 8.6E-07 49.3 8.6 42 167-209 21-62 (249)
375 TIGR03878 thermo_KaiC_2 KaiC d 96.0 0.048 1E-06 49.0 9.2 41 167-208 34-74 (259)
376 cd01135 V_A-ATPase_B V/A-type 96.0 0.026 5.5E-07 50.7 7.2 84 170-253 70-175 (276)
377 PHA02774 E1; Provisional 96.0 0.03 6.6E-07 55.2 8.3 38 150-192 420-457 (613)
378 cd00984 DnaB_C DnaB helicase C 96.0 0.06 1.3E-06 47.7 9.7 49 169-219 13-61 (242)
379 PRK10078 ribose 1,5-bisphospho 96.0 0.0056 1.2E-07 52.1 2.9 23 170-192 3-25 (186)
380 COG1124 DppF ABC-type dipeptid 95.9 0.0058 1.3E-07 53.2 2.9 22 170-191 34-55 (252)
381 PTZ00494 tuzin-like protein; P 95.9 1.3 2.7E-05 42.7 18.4 162 140-312 369-542 (664)
382 PF08477 Miro: Miro-like prote 95.9 0.0062 1.3E-07 47.4 2.9 22 172-193 2-23 (119)
383 cd00071 GMPK Guanosine monopho 95.9 0.0052 1.1E-07 49.5 2.5 21 172-192 2-22 (137)
384 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0068 1.5E-07 46.3 3.0 22 169-190 15-36 (107)
385 PRK06731 flhF flagellar biosyn 95.9 0.066 1.4E-06 48.3 9.8 99 169-268 75-180 (270)
386 PF03266 NTPase_1: NTPase; In 95.9 0.0084 1.8E-07 50.1 3.8 22 172-193 2-23 (168)
387 PRK13949 shikimate kinase; Pro 95.9 0.0061 1.3E-07 51.1 2.9 22 171-192 3-24 (169)
388 COG1116 TauB ABC-type nitrate/ 95.9 0.0061 1.3E-07 53.4 2.9 22 169-190 29-50 (248)
389 PRK14737 gmk guanylate kinase; 95.9 0.0073 1.6E-07 51.4 3.4 25 168-192 3-27 (186)
390 TIGR00073 hypB hydrogenase acc 95.9 0.0077 1.7E-07 52.2 3.5 26 167-192 20-45 (207)
391 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.021 4.5E-07 47.1 6.0 114 170-290 26-146 (157)
392 TIGR03305 alt_F1F0_F1_bet alte 95.9 0.025 5.3E-07 54.5 7.1 84 170-253 139-241 (449)
393 COG0396 sufC Cysteine desulfur 95.9 0.099 2.1E-06 45.4 10.0 53 244-296 162-216 (251)
394 PRK13947 shikimate kinase; Pro 95.9 0.0066 1.4E-07 50.8 2.9 22 171-192 3-24 (171)
395 PF13086 AAA_11: AAA domain; P 95.8 0.021 4.6E-07 49.9 6.2 51 171-221 19-75 (236)
396 PRK14530 adenylate kinase; Pro 95.8 0.0069 1.5E-07 52.9 3.0 22 171-192 5-26 (215)
397 PRK14527 adenylate kinase; Pro 95.8 0.0084 1.8E-07 51.3 3.4 27 167-193 4-30 (191)
398 cd01878 HflX HflX subfamily. 95.8 0.024 5.2E-07 48.8 6.3 27 167-193 39-65 (204)
399 PRK12678 transcription termina 95.8 0.026 5.6E-07 55.6 6.9 41 170-210 417-458 (672)
400 cd00464 SK Shikimate kinase (S 95.8 0.0073 1.6E-07 49.4 2.9 21 172-192 2-22 (154)
401 TIGR00665 DnaB replicative DNA 95.8 1.2 2.5E-05 43.4 18.7 51 169-222 195-246 (434)
402 TIGR00176 mobB molybdopterin-g 95.8 0.0099 2.2E-07 49.0 3.6 23 171-193 1-23 (155)
403 COG0714 MoxR-like ATPases [Gen 95.8 0.026 5.5E-07 52.8 6.7 109 143-268 25-136 (329)
404 cd00544 CobU Adenosylcobinamid 95.8 0.09 2E-06 43.9 9.3 77 172-253 2-82 (169)
405 COG1936 Predicted nucleotide k 95.8 0.0069 1.5E-07 50.0 2.5 20 171-190 2-21 (180)
406 TIGR01313 therm_gnt_kin carboh 95.7 0.0064 1.4E-07 50.5 2.4 21 172-192 1-21 (163)
407 PRK08149 ATP synthase SpaL; Va 95.7 0.034 7.4E-07 53.3 7.4 81 170-253 152-250 (428)
408 PRK05057 aroK shikimate kinase 95.7 0.0089 1.9E-07 50.2 3.1 23 170-192 5-27 (172)
409 PRK06002 fliI flagellum-specif 95.7 0.039 8.4E-07 53.2 7.7 83 169-253 165-263 (450)
410 PLN02318 phosphoribulokinase/u 95.7 0.013 2.9E-07 57.9 4.7 26 167-192 63-88 (656)
411 PLN02348 phosphoribulokinase 95.7 0.01 2.2E-07 55.9 3.7 27 167-193 47-73 (395)
412 cd02027 APSK Adenosine 5'-phos 95.7 0.0077 1.7E-07 49.3 2.6 22 171-192 1-22 (149)
413 TIGR00708 cobA cob(I)alamin ad 95.7 0.11 2.4E-06 43.4 9.4 115 169-285 5-141 (173)
414 PF00005 ABC_tran: ABC transpo 95.7 0.009 2E-07 47.9 3.0 23 170-192 12-34 (137)
415 PRK13975 thymidylate kinase; P 95.7 0.0096 2.1E-07 51.0 3.3 24 170-193 3-26 (196)
416 TIGR00764 lon_rel lon-related 95.7 0.022 4.8E-07 57.5 6.3 44 142-193 18-61 (608)
417 PRK12339 2-phosphoglycerate ki 95.7 0.011 2.3E-07 50.8 3.5 24 169-192 3-26 (197)
418 COG5635 Predicted NTPase (NACH 95.7 0.037 8E-07 58.2 8.1 135 169-305 222-369 (824)
419 PF13245 AAA_19: Part of AAA d 95.7 0.026 5.7E-07 40.3 4.9 23 170-192 11-33 (76)
420 PRK04301 radA DNA repair and r 95.6 0.041 8.8E-07 51.1 7.5 57 167-224 100-161 (317)
421 cd01672 TMPK Thymidine monopho 95.6 0.024 5.3E-07 48.4 5.6 23 171-193 2-24 (200)
422 PF13521 AAA_28: AAA domain; P 95.6 0.0087 1.9E-07 49.7 2.7 21 172-192 2-22 (163)
423 PRK07132 DNA polymerase III su 95.6 1.5 3.2E-05 40.3 17.4 132 169-313 18-161 (299)
424 PRK08927 fliI flagellum-specif 95.6 0.044 9.5E-07 52.7 7.7 81 170-253 159-257 (442)
425 KOG0736 Peroxisome assembly fa 95.6 0.77 1.7E-05 46.8 16.3 151 142-308 672-850 (953)
426 CHL00081 chlI Mg-protoporyphyr 95.6 0.011 2.3E-07 55.3 3.4 45 142-192 17-61 (350)
427 PRK13948 shikimate kinase; Pro 95.6 0.012 2.7E-07 49.8 3.6 26 167-192 8-33 (182)
428 TIGR02768 TraA_Ti Ti-type conj 95.6 0.091 2E-06 54.5 10.5 116 148-281 354-474 (744)
429 cd03284 ABC_MutS1 MutS1 homolo 95.6 0.027 5.8E-07 49.2 5.7 22 170-191 31-52 (216)
430 COG0541 Ffh Signal recognition 95.6 2.3 5E-05 40.6 20.3 58 167-226 98-157 (451)
431 PLN02200 adenylate kinase fami 95.6 0.012 2.6E-07 52.0 3.5 26 167-192 41-66 (234)
432 PRK08506 replicative DNA helic 95.5 1.4 3.1E-05 43.2 18.2 53 169-224 192-244 (472)
433 PRK05748 replicative DNA helic 95.5 1.4 2.9E-05 43.1 18.0 53 169-224 203-256 (448)
434 TIGR02236 recomb_radA DNA repa 95.5 0.049 1.1E-06 50.4 7.7 57 167-224 93-154 (310)
435 PRK05922 type III secretion sy 95.5 0.048 1E-06 52.3 7.6 81 170-253 158-256 (434)
436 COG1126 GlnQ ABC-type polar am 95.5 0.011 2.3E-07 50.8 2.8 23 169-191 28-50 (240)
437 COG1136 SalX ABC-type antimicr 95.5 0.011 2.4E-07 51.5 3.0 22 170-191 32-53 (226)
438 PRK09280 F0F1 ATP synthase sub 95.5 0.045 9.8E-07 52.9 7.4 84 170-253 145-247 (463)
439 PRK09825 idnK D-gluconate kina 95.5 0.012 2.5E-07 49.7 3.0 23 170-192 4-26 (176)
440 PRK14529 adenylate kinase; Pro 95.5 0.04 8.7E-07 48.2 6.4 22 172-193 3-24 (223)
441 TIGR01039 atpD ATP synthase, F 95.5 0.064 1.4E-06 51.7 8.3 84 170-253 144-246 (461)
442 TIGR02915 PEP_resp_reg putativ 95.5 0.047 1E-06 53.2 7.6 133 142-284 139-284 (445)
443 PRK04182 cytidylate kinase; Pr 95.5 0.012 2.7E-07 49.4 3.1 22 171-192 2-23 (180)
444 PRK06936 type III secretion sy 95.4 0.048 1E-06 52.4 7.3 46 170-218 163-209 (439)
445 cd01132 F1_ATPase_alpha F1 ATP 95.4 0.039 8.5E-07 49.5 6.3 95 170-268 70-184 (274)
446 PRK05537 bifunctional sulfate 95.4 0.019 4.2E-07 57.4 4.8 49 141-193 368-416 (568)
447 PRK09519 recA DNA recombinatio 95.4 0.049 1.1E-06 56.0 7.7 82 167-254 58-148 (790)
448 PRK10875 recD exonuclease V su 95.4 0.1 2.2E-06 52.8 9.8 109 170-281 168-299 (615)
449 PLN02796 D-glycerate 3-kinase 95.4 0.014 3.1E-07 54.0 3.6 26 167-192 98-123 (347)
450 TIGR00041 DTMP_kinase thymidyl 95.4 0.035 7.6E-07 47.5 5.8 24 170-193 4-27 (195)
451 TIGR00064 ftsY signal recognit 95.4 0.02 4.3E-07 51.9 4.4 27 167-193 70-96 (272)
452 COG1120 FepC ABC-type cobalami 95.4 0.012 2.5E-07 52.4 2.8 24 168-191 27-50 (258)
453 cd01136 ATPase_flagellum-secre 95.4 0.08 1.7E-06 49.0 8.4 81 170-253 70-168 (326)
454 PRK13946 shikimate kinase; Pro 95.4 0.013 2.8E-07 49.8 3.1 25 169-193 10-34 (184)
455 PRK06761 hypothetical protein; 95.4 0.017 3.7E-07 52.3 3.9 24 170-193 4-27 (282)
456 cd04155 Arl3 Arl3 subfamily. 95.4 0.014 3E-07 48.7 3.1 25 168-192 13-37 (173)
457 PF02374 ArsA_ATPase: Anion-tr 95.4 0.023 4.9E-07 52.4 4.7 22 170-191 2-23 (305)
458 PRK09435 membrane ATPase/prote 95.4 0.024 5.2E-07 52.7 4.9 38 151-192 42-79 (332)
459 PTZ00185 ATPase alpha subunit; 95.4 0.09 2E-06 51.2 8.8 84 170-253 190-298 (574)
460 TIGR02788 VirB11 P-type DNA tr 95.3 0.04 8.6E-07 51.0 6.3 24 169-192 144-167 (308)
461 COG2019 AdkA Archaeal adenylat 95.3 0.018 3.8E-07 47.3 3.4 24 169-192 4-27 (189)
462 PF01926 MMR_HSR1: 50S ribosom 95.3 0.016 3.4E-07 45.1 3.1 21 172-192 2-22 (116)
463 PF03029 ATP_bind_1: Conserved 95.3 0.019 4E-07 51.0 3.9 20 174-193 1-20 (238)
464 PF01078 Mg_chelatase: Magnesi 95.3 0.023 5E-07 48.7 4.3 41 143-191 4-44 (206)
465 TIGR02173 cyt_kin_arch cytidyl 95.3 0.015 3.2E-07 48.5 3.1 22 171-192 2-23 (171)
466 PRK14532 adenylate kinase; Pro 95.3 0.013 2.9E-07 49.8 2.9 21 172-192 3-23 (188)
467 cd00046 DEXDc DEAD-like helica 95.3 0.14 3E-06 40.2 8.8 37 171-207 2-39 (144)
468 PRK10463 hydrogenase nickel in 95.3 0.025 5.3E-07 51.3 4.6 26 167-192 102-127 (290)
469 COG0529 CysC Adenylylsulfate k 95.3 0.019 4E-07 47.6 3.4 27 167-193 21-47 (197)
470 CHL00206 ycf2 Ycf2; Provisiona 95.3 0.24 5.1E-06 55.4 12.5 25 168-192 1629-1653(2281)
471 cd01130 VirB11-like_ATPase Typ 95.3 0.023 4.9E-07 48.4 4.2 24 169-192 25-48 (186)
472 TIGR02030 BchI-ChlI magnesium 95.3 0.021 4.5E-07 53.3 4.2 44 143-192 5-48 (337)
473 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.014 3E-07 50.9 3.0 23 170-192 31-53 (218)
474 cd01428 ADK Adenylate kinase ( 95.3 0.014 3E-07 49.8 2.9 21 172-192 2-22 (194)
475 PRK15453 phosphoribulokinase; 95.3 0.017 3.8E-07 51.9 3.5 26 167-192 3-28 (290)
476 PRK07004 replicative DNA helic 95.3 1 2.3E-05 44.0 16.1 53 168-223 212-265 (460)
477 cd03116 MobB Molybdenum is an 95.3 0.017 3.7E-07 47.8 3.2 24 170-193 2-25 (159)
478 PF02367 UPF0079: Uncharacteri 95.3 0.037 8.1E-07 43.5 5.0 26 168-193 14-39 (123)
479 cd03225 ABC_cobalt_CbiO_domain 95.3 0.014 3.1E-07 50.6 2.9 24 169-192 27-50 (211)
480 PF03215 Rad17: Rad17 cell cyc 95.3 0.024 5.2E-07 56.0 4.8 35 168-205 44-78 (519)
481 PF11868 DUF3388: Protein of u 95.3 0.39 8.4E-06 39.1 10.7 114 125-268 13-132 (192)
482 PF10662 PduV-EutP: Ethanolami 95.2 0.015 3.2E-07 46.9 2.7 23 171-193 3-25 (143)
483 TIGR01166 cbiO cobalt transpor 95.2 0.015 3.2E-07 49.6 2.9 23 170-192 19-41 (190)
484 COG1100 GTPase SAR1 and relate 95.2 0.013 2.9E-07 50.9 2.7 24 170-193 6-29 (219)
485 TIGR01287 nifH nitrogenase iro 95.2 0.013 2.9E-07 53.2 2.7 24 170-193 1-24 (275)
486 TIGR01448 recD_rel helicase, p 95.2 0.11 2.5E-06 53.6 9.7 101 170-280 339-449 (720)
487 PRK07594 type III secretion sy 95.2 0.067 1.5E-06 51.4 7.5 49 169-220 155-204 (433)
488 PRK06904 replicative DNA helic 95.2 2.5 5.5E-05 41.5 18.5 53 169-224 221-274 (472)
489 PRK10416 signal recognition pa 95.2 0.018 3.8E-07 53.4 3.5 27 167-193 112-138 (318)
490 TIGR00960 3a0501s02 Type II (G 95.2 0.015 3.3E-07 50.6 2.9 23 170-192 30-52 (216)
491 TIGR03498 FliI_clade3 flagella 95.2 0.049 1.1E-06 52.2 6.5 23 170-192 141-163 (418)
492 cd03297 ABC_ModC_molybdenum_tr 95.2 0.017 3.7E-07 50.3 3.2 25 167-192 22-46 (214)
493 PF02456 Adeno_IVa2: Adenoviru 95.2 0.098 2.1E-06 47.3 7.8 41 167-207 85-126 (369)
494 TIGR00750 lao LAO/AO transport 95.2 0.026 5.7E-07 51.9 4.5 27 167-193 32-58 (300)
495 cd03229 ABC_Class3 This class 95.2 0.017 3.6E-07 48.8 3.0 23 170-192 27-49 (178)
496 KOG0739 AAA+-type ATPase [Post 95.1 0.11 2.4E-06 46.7 8.1 95 142-255 133-236 (439)
497 CHL00060 atpB ATP synthase CF1 95.1 0.067 1.5E-06 52.0 7.3 52 170-221 162-214 (494)
498 PRK14493 putative bifunctional 95.1 0.022 4.8E-07 51.5 3.9 35 170-206 2-36 (274)
499 smart00487 DEXDc DEAD-like hel 95.1 0.083 1.8E-06 44.4 7.3 23 170-192 25-48 (201)
500 PF03796 DnaB_C: DnaB-like hel 95.1 0.047 1E-06 49.1 6.0 54 170-225 20-73 (259)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-49 Score=401.39 Aligned_cols=356 Identities=26% Similarity=0.422 Sum_probs=276.2
Q ss_pred HHhhhccHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Q 044878 2 LFERLMSPELLKLAGQEGVRSKLKKWEETLKTIEAVLIDAEEKQLTDRAVKLWLDDLRDLAYDAEDILDEFATEAGLRLL 81 (368)
Q Consensus 2 l~~~l~~~l~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~Wl~~lr~~a~d~eD~lD~~~~~~~~~~~ 81 (368)
.++++..++.+++....+.++.+..|+++|..+++++++++.++........|...+++++|++||.++.|.......+.
T Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~ 87 (889)
T KOG4658|consen 8 GVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKA 87 (889)
T ss_pred ehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788899999999999999999999999999999999998888999999999999999999999999988765543
Q ss_pred hhccccccchhhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhhhhcCccc-cCC--------CCCce-ecccccH
Q 044878 82 KKREASSSRVRSLIQGVSSGASSVMSGISTRPKIKEISSRLEELCKRRAVLGLEK-IAG--------GEPAV-YGRDEDK 151 (368)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~i~~~~~~~~~~~-~~~--------~~~~~-~Gr~~~~ 151 (368)
.+.........+.++.+..........+.+.+++-.+.+.++.+..+...-.... ..+ ..+.. +|.++.+
T Consensus 88 ~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~ 167 (889)
T KOG4658|consen 88 NDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETML 167 (889)
T ss_pred hHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccccccHHHHH
Confidence 2111001011111111000011122233444444444444444432210000000 000 01222 9999999
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh--ccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCC
Q 044878 152 DRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK--LTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCG 229 (368)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~ 229 (368)
+++.+.|..++ ..+++|+||||+||||||+.++|+. ++.+|+.++||+||+.|+...++.+|+..++.....
T Consensus 168 ~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 168 EKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred HHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcc
Confidence 99999999853 3899999999999999999999997 889999999999999999999999999999875543
Q ss_pred CCC--hHHHHHHHHh---cCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhh-cCCCCceeCCCCCh
Q 044878 230 LTD--LNSVQLKLKE---AKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVALT-MGSGKNYELKLLSD 303 (368)
Q Consensus 230 ~~~--~~~l~~~l~~---~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~-~~~~~~~~l~~L~~ 303 (368)
..+ .+.+...+.+ .+||||||||||+. .+|+.+..++|...+||+|++|||+..|+.. +++...+++.+|++
T Consensus 242 ~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred cchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 322 2344444443 39999999999997 5799999999999899999999999999998 78888999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhc
Q 044878 304 DDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQRIDEWRAILDS 366 (368)
Q Consensus 304 ~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~W~~vl~~ 366 (368)
++||.||++.+|...... ++.++++|++|+++|+|+|||++++|+.|++|.+.++|+++++.
T Consensus 320 ~eaW~LF~~~v~~~~~~~-~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~ 381 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGS-HPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNV 381 (889)
T ss_pred cccHHHHHHhhccccccc-cccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcc
Confidence 999999999998764333 35699999999999999999999999999999999999999863
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.5e-37 Score=283.43 Aligned_cols=213 Identities=34% Similarity=0.592 Sum_probs=167.6
Q ss_pred ccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhcc
Q 044878 147 RDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITL 225 (368)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 225 (368)
||.++++|.+.|.... .+.++|+|+||||+||||||..++++. ++.+|+.++|+.++...+...++..|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7889999999999855 568999999999999999999999987 89999999999999999999999999999988
Q ss_pred CCC---CCCChHHHHHHHHhc---CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhcCC-CCceeC
Q 044878 226 SSC---GLTDLNSVQLKLKEA---KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVALTMGS-GKNYEL 298 (368)
Q Consensus 226 ~~~---~~~~~~~l~~~l~~~---kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~-~~~~~l 298 (368)
... ...+...+...+.+. +++||||||||+. ..|+.+...++....||+||+|||+..++..+.. ...|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 743 335555565555554 8999999999876 6899998888877789999999999998876654 568999
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHHhc
Q 044878 299 KLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQRIDEWRAILDS 366 (368)
Q Consensus 299 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~W~~vl~~ 366 (368)
.+|+.+++++||++.++... ...++.+++.+++|+++|+|+|||++++|++|+.+.+..+|++++++
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~ 221 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEE 221 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 12224556788999999999999999999999777677899998853
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.98 E-value=2.9e-31 Score=282.82 Aligned_cols=215 Identities=24% Similarity=0.409 Sum_probs=171.5
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEe---cCC--------
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCV---SDD-------- 209 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~v---s~~-------- 209 (368)
.++++|++..++++..+|.... ...++|+||||||+||||||+++|+. +..+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~-l~~~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSR-LSRQFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHH-HhhcCCeEEEeeccccccchhhccccc
Confidence 4679999999999999886543 57899999999999999999999998 7888988877641 111
Q ss_pred ---CC-HHHHHHHHHHHhccCC-CCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 210 ---FD-VLRISKAILESITLSS-CGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 210 ---~~-~~~l~~~il~~l~~~~-~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
++ ...+...++..+.... ........+.+.+.. +|+||||||||+. ..|+.+.......++||+||||||+.
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~-krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKH-RKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhC-CeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 11 1234455555543321 122334555555555 9999999999875 68998887776667899999999999
Q ss_pred HHHhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHH
Q 044878 285 VVALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQRIDEWRAIL 364 (368)
Q Consensus 285 ~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~W~~vl 364 (368)
.++..++..++|++..|+.++||+||+.+||+... .++++.+++++|+++|+|+|||++++|+.|+.+ +.++|+.++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l 411 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDML 411 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 99988777889999999999999999999997543 235789999999999999999999999999987 689999988
Q ss_pred hc
Q 044878 365 DS 366 (368)
Q Consensus 365 ~~ 366 (368)
++
T Consensus 412 ~~ 413 (1153)
T PLN03210 412 PR 413 (1153)
T ss_pred HH
Confidence 64
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.48 E-value=1.2e-11 Score=112.15 Aligned_cols=179 Identities=17% Similarity=0.131 Sum_probs=114.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChH----HHHHHH----
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLN----SVQLKL---- 240 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~----~l~~~l---- 240 (368)
..++.|+|++|+|||||++.+++......+ ..+|+ +....+..+++..+...++..... .+.. .+...+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHH
Confidence 457899999999999999999987311111 12233 334457778889999888765332 2222 222222
Q ss_pred HhcCeeEEEEEcCccCChhhHHHhhhhcCCC---CCCcEEEEEeCChHHHhhcC----------CCCceeCCCCChhHHH
Q 044878 241 KEAKKFLIVLDDVWDKKYELWQALKSPFMAG---APGSRIIVTTRSMVVALTMG----------SGKNYELKLLSDDDCW 307 (368)
Q Consensus 241 ~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~---~~gs~IivTtR~~~va~~~~----------~~~~~~l~~L~~~~~~ 307 (368)
...++++||+||++..+...++.+....... .....|++|.... ....+. ....+++.+|+.++..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 2237889999999988766777766433211 1222455555432 221111 1235789999999999
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 044878 308 SVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL 351 (368)
Q Consensus 308 ~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 351 (368)
+++...+..........--.+..+.|++.|+|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99887763322111111235778899999999999999998876
No 5
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.46 E-value=1.1e-12 Score=116.12 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=106.0
Q ss_pred eecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH----
Q 044878 144 VYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI---- 219 (368)
Q Consensus 144 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i---- 219 (368)
|+||+.++++|.+++... ....+.|+|+.|+|||+|++.+.+......+ ..+|+.......... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~~~-~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNESS-LRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhhhH-HHHHHHHH
Confidence 689999999999998763 3467889999999999999999987312222 444544433332221 1221
Q ss_pred ------HHHhc----cCC----------CCCCChHHHHHHHHhc-CeeEEEEEcCccCC------hhhHHHhhhhcCC--
Q 044878 220 ------LESIT----LSS----------CGLTDLNSVQLKLKEA-KKFLIVLDDVWDKK------YELWQALKSPFMA-- 270 (368)
Q Consensus 220 ------l~~l~----~~~----------~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~------~~~~~~l~~~l~~-- 270 (368)
...+. ... .....+..+...+.+. ++++||+||+.... ..-...+...+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11111 100 1224456666666666 67999999996543 1222333333332
Q ss_pred CCCCcEEEEEeCChHHHhh--------cCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044878 271 GAPGSRIIVTTRSMVVALT--------MGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 271 ~~~gs~IivTtR~~~va~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
......+|+++........ .+....+.|+||+.+++++++....-.. ... +.-++..++|+..+||+|.
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHH
Confidence 2233345555555544433 1222458999999999999998865322 111 1224555889999999999
Q ss_pred HHHH
Q 044878 343 AARA 346 (368)
Q Consensus 343 ai~~ 346 (368)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.37 E-value=3.8e-11 Score=115.02 Aligned_cols=206 Identities=12% Similarity=0.110 Sum_probs=125.1
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
|+.++||++++++|...|...-.. .....+.|+|++|+|||++++.++++. .....-..+++......+...++..+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 678999999999999998543211 334557899999999999999999984 22212234555555566778889999
Q ss_pred HHHhccCC-C-CCCChHHHHHHH----Hhc-CeeEEEEEcCccCC----hhhHHHhhhhcCCCCCCcE--EEEEeCChHH
Q 044878 220 LESITLSS-C-GLTDLNSVQLKL----KEA-KKFLIVLDDVWDKK----YELWQALKSPFMAGAPGSR--IIVTTRSMVV 286 (368)
Q Consensus 220 l~~l~~~~-~-~~~~~~~l~~~l----~~~-kr~LlVlDdvw~~~----~~~~~~l~~~l~~~~~gs~--IivTtR~~~v 286 (368)
+.++.... + ...+...+...+ .+. ++.+||||+++... .+.+..+...+.. ..+++ +|.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcch
Confidence 99987532 1 122344443333 332 56899999997532 1233333332222 23333 6666665543
Q ss_pred HhhcC-------CCCceeCCCCChhHHHHHHHHhhcCCC--CCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 287 ALTMG-------SGKNYELKLLSDDDCWSVFVNHAFEGR--DAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 287 a~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
..... ....+.+.|++.++..+++..++-... .......++.+++......|..+.|+.++-.
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 32221 124678999999999999988763211 1112123344444333335667788777654
No 7
>PF05729 NACHT: NACHT domain
Probab=99.33 E-value=1.9e-11 Score=102.19 Aligned_cols=142 Identities=19% Similarity=0.249 Sum_probs=89.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh-cccc----ccCeEEEEecCCCCHH---HHHHHHHHHhccCCCCCCChH-HHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK-LTEA----FEPKAWVCVSDDFDVL---RISKAILESITLSSCGLTDLN-SVQLKL 240 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----F~~~~wv~vs~~~~~~---~l~~~il~~l~~~~~~~~~~~-~l~~~l 240 (368)
+++.|+|.+|+||||+++.++... .... +...+|++........ .+...|..+..... .... .....+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 578999999999999999999875 2222 4456677665543322 33333333332221 1122 223333
Q ss_pred HhcCeeEEEEEcCccCChh-------hHHH-hhhhcCC-CCCCcEEEEEeCChHH---HhhcCCCCceeCCCCChhHHHH
Q 044878 241 KEAKKFLIVLDDVWDKKYE-------LWQA-LKSPFMA-GAPGSRIIVTTRSMVV---ALTMGSGKNYELKLLSDDDCWS 308 (368)
Q Consensus 241 ~~~kr~LlVlDdvw~~~~~-------~~~~-l~~~l~~-~~~gs~IivTtR~~~v---a~~~~~~~~~~l~~L~~~~~~~ 308 (368)
...++++||||++.+.... .+.. +...++. ..+++++++|+|.... .........+++.+|++++..+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 3449999999999654321 1222 2233332 3568999999998766 3334444689999999999999
Q ss_pred HHHHhh
Q 044878 309 VFVNHA 314 (368)
Q Consensus 309 lf~~~~ 314 (368)
++.+..
T Consensus 158 ~~~~~f 163 (166)
T PF05729_consen 158 YLRKYF 163 (166)
T ss_pred HHHHHh
Confidence 887763
No 8
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.26 E-value=2.4e-10 Score=121.03 Aligned_cols=193 Identities=14% Similarity=0.175 Sum_probs=123.6
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC-CCCHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD-DFDVLRISKAI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i 219 (368)
++.++-|..-.+ .|... ...+++.|+|++|.||||++...... ++.++|+++.. +.+...++..+
T Consensus 13 ~~~~~~R~rl~~----~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 13 LHNTVVRERLLA----KLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccccCcchHHHH----HHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHH
Confidence 456666665444 44321 45689999999999999999998764 23689999864 44666777777
Q ss_pred HHHhccCCCC-------------CCChHH----HHHHHHh-cCeeEEEEEcCccCChhhHH-HhhhhcCCCCCCcEEEEE
Q 044878 220 LESITLSSCG-------------LTDLNS----VQLKLKE-AKKFLIVLDDVWDKKYELWQ-ALKSPFMAGAPGSRIIVT 280 (368)
Q Consensus 220 l~~l~~~~~~-------------~~~~~~----l~~~l~~-~kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~IivT 280 (368)
+..+...... ..+... +...+.. ..+++|||||+..-+..... .+...++....+.++|+|
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777422111 022222 3333333 27899999999765433433 343334444556789899
Q ss_pred eCChH---HHhhcCCCCceeCC----CCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcC
Q 044878 281 TRSMV---VALTMGSGKNYELK----LLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRS 353 (368)
Q Consensus 281 tR~~~---va~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 353 (368)
||... ...........++. +|+.+|+.+||....... --.+....|.+.|+|.|+++..++..+..
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-------IEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-------CCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99732 11111122345555 999999999997654211 11344577999999999999999877754
Q ss_pred C
Q 044878 354 K 354 (368)
Q Consensus 354 ~ 354 (368)
.
T Consensus 232 ~ 232 (903)
T PRK04841 232 N 232 (903)
T ss_pred C
Confidence 3
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.25 E-value=4.1e-10 Score=106.75 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=120.0
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-c-cccc---cCeEEEEecCCCCHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-L-TEAF---EPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~-~~~F---~~~~wv~vs~~~~~~~l 215 (368)
|..++||++++++|...|...-.. .....+.|+|++|+|||++++.+++.. . .... -..+|+......+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 568999999999999998652211 334568999999999999999999873 1 1111 13456666666677889
Q ss_pred HHHHHHHhc---cCCC-CCCChH----HHHHHHHhc-CeeEEEEEcCccCC---hhhHHHhhhhc-CCCC--CCcEEEEE
Q 044878 216 SKAILESIT---LSSC-GLTDLN----SVQLKLKEA-KKFLIVLDDVWDKK---YELWQALKSPF-MAGA--PGSRIIVT 280 (368)
Q Consensus 216 ~~~il~~l~---~~~~-~~~~~~----~l~~~l~~~-kr~LlVlDdvw~~~---~~~~~~l~~~l-~~~~--~gs~IivT 280 (368)
+..|+.++. ...+ ...+.. .+...+... ++++||||+++... .+....+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 112222 333334333 67899999996641 11122222211 1111 22345555
Q ss_pred eCChHHHhhcC-------CCCceeCCCCChhHHHHHHHHhhcCC-CCCCCCccHHHHHHHHHHHcCCChHHH
Q 044878 281 TRSMVVALTMG-------SGKNYELKLLSDDDCWSVFVNHAFEG-RDAGTHGNFESTRQRVVEKRKGLPLAA 344 (368)
Q Consensus 281 tR~~~va~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~l~~~~~~I~~~c~GlPLai 344 (368)
|........+. ....+.+.|.+.++..+++..++-.. ....-.++..+....++..+.|.|-.+
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 55443322111 12468899999999999998886311 111111233344455777778888544
No 10
>PRK06893 DNA replication initiation factor; Validated
Probab=99.22 E-value=4.1e-10 Score=99.43 Aligned_cols=156 Identities=19% Similarity=0.157 Sum_probs=98.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
.+.+.|+|++|+|||+|++.+++.. ......+.|++++.. ...... +...+. +.-+|
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~y~~~~~~---~~~~~~-----------------~~~~~~--~~dlL 95 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY-LLNQRTAIYIPLSKS---QYFSPA-----------------VLENLE--QQDLV 95 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEeeHHHh---hhhhHH-----------------HHhhcc--cCCEE
Confidence 3578999999999999999999984 222334566665421 000011 111111 34599
Q ss_pred EEEcCccCC-hhhHH-HhhhhcCCC-CCCcEEEE-EeCC---------hHHHhhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 249 VLDDVWDKK-YELWQ-ALKSPFMAG-APGSRIIV-TTRS---------MVVALTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 249 VlDdvw~~~-~~~~~-~l~~~l~~~-~~gs~Iiv-TtR~---------~~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
+|||+|... ...|+ .+...+... ..|+.+|+ |+.. +.+...+..+..+++.+++.++.++++.+.++
T Consensus 96 ilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~ 175 (229)
T PRK06893 96 CLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAY 175 (229)
T ss_pred EEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHH
Confidence 999998742 23555 344444322 24556655 4443 35566666667899999999999999999886
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 044878 316 EGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL 351 (368)
Q Consensus 316 ~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 351 (368)
...- .--+++..-|++.+.|..-++..+-..|
T Consensus 176 ~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 176 QRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4321 1225667789999998776665544433
No 11
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=3.9e-10 Score=104.24 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=102.3
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+|+|+++.++.|..++....... ..+..+.++|++|+|||+||+.+.+.. ...| ..+..+....... +...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~-~~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEM-GVNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHh-CCCE---EEeccchhcCchh-HHHHHH
Confidence 368999999999998886422111 345567899999999999999999873 2221 1111111111111 111222
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcC-------------------CCCCCcEEEEEeC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFM-------------------AGAPGSRIIVTTR 282 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~-------------------~~~~gs~IivTtR 282 (368)
.+. ...+|++|++........+.+...+. ...+.+-|..||+
T Consensus 78 ~~~-------------------~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 78 NLE-------------------EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred hcc-------------------cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 211 33466666664433222222222211 0112445556666
Q ss_pred ChHHHhhc--CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 044878 283 SMVVALTM--GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGL 350 (368)
Q Consensus 283 ~~~va~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 350 (368)
...+.... .....+++.+++.++..+++.+.+...... --.+....|++.|+|.|-.+..+...
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~----~~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE----IEPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC----cCHHHHHHHHHHhCCCcchHHHHHHH
Confidence 54333221 123467999999999999998877432111 12456678999999999766555443
No 12
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.17 E-value=3.7e-10 Score=105.31 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=102.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+|+|+++.++.+..++....... .....+.|+|++|+||||||+.+.+.. ...+ .++..+ .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l-~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEM-GVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHh-CCCe---EEEecc-cccChHHHHHHHH
Confidence 569999999999988876421111 345678899999999999999999883 2211 111111 1111111222222
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCC-------------------CCCCcEEEEEeC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMA-------------------GAPGSRIIVTTR 282 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~-------------------~~~gs~IivTtR 282 (368)
.+. ..-+|++|++........+.+...+.. ..+.+-|..|++
T Consensus 99 ~l~-------------------~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 99 NLE-------------------EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred hcc-------------------cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 221 344666676644322222222221110 012344556666
Q ss_pred ChHHHhhc--CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 283 SMVVALTM--GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 283 ~~~va~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
...+.... .....+++.+++.++..+++.+.+....-. --++....|++.|+|.|-.+..+..
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~----~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE----IDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHcCCCchHHHHHHH
Confidence 44332221 113468999999999999999877432211 2245678899999999975555544
No 13
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.07 E-value=3.1e-09 Score=102.22 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=106.7
Q ss_pred CceecccccHHH---HHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 142 PAVYGRDEDKDR---MLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 142 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
.+++|++..+.. +..++.. .....+.++|++|+||||||+.+.+. .... |+.++.......-++.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~-~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA-TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH-hCCC-----EEEEecccccHHHHHH
Confidence 357888776555 6676654 34456788999999999999999987 3322 2333322111111222
Q ss_pred HHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEE--eCChHHH--hh-cCCC
Q 044878 219 ILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVT--TRSMVVA--LT-MGSG 293 (368)
Q Consensus 219 il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT--tR~~~va--~~-~~~~ 293 (368)
+++.... .....++.+|+||+++..+....+.+...+. .|+.+++. |.+.... .. ..-.
T Consensus 80 ii~~~~~-------------~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 80 VIEEARQ-------------RRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HHHHHHH-------------hhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccc
Confidence 2222210 0111277899999998876666666666554 34555543 3333211 11 1112
Q ss_pred CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 044878 294 KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGL 350 (368)
Q Consensus 294 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 350 (368)
..+.+.+++.++.+.+|.+.+..... ...+--.+....|++.|+|.|..+..+...
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 57899999999999999886532111 000122456678899999999877555443
No 14
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.99 E-value=1e-08 Score=90.45 Aligned_cols=170 Identities=18% Similarity=0.109 Sum_probs=100.6
Q ss_pred cccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 044878 148 DEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSS 227 (368)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~ 227 (368)
+..++.+..++.. .....+.|+|+.|+|||+||+.+++.. .......+++.++.-.+ ..
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~-~~~~~~~~~i~~~~~~~------~~-------- 81 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA-EERGKSAIYLPLAELAQ------AD-------- 81 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH-HhcCCcEEEEeHHHHHH------hH--------
Confidence 3455556665432 345678899999999999999999874 22233445555433211 00
Q ss_pred CCCCChHHHHHHHHhcCeeEEEEEcCccCChh-h-HHHhhhhcCC-CCCCcEEEEEeCChH---------HHhhcCCCCc
Q 044878 228 CGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYE-L-WQALKSPFMA-GAPGSRIIVTTRSMV---------VALTMGSGKN 295 (368)
Q Consensus 228 ~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~-~-~~~l~~~l~~-~~~gs~IivTtR~~~---------va~~~~~~~~ 295 (368)
..+...+. +.-+|||||+...... . .+.+...+.. ...+.++|+||+... +...+.....
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 01111111 3348999999765322 2 3345444432 123457888887532 2222222457
Q ss_pred eeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH
Q 044878 296 YELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGL 350 (368)
Q Consensus 296 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 350 (368)
+++.+++.++...++...+-...- +--++....|++.+.|.|..+.-+...
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGL----QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 899999999999988775532111 112455677888899999988777433
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.99 E-value=2.3e-09 Score=98.32 Aligned_cols=173 Identities=18% Similarity=0.213 Sum_probs=100.7
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
+.+++|.+..+.++++ . ..+.-..+|||+|+||||||+.+... ....| ..+|-..+-..=+++++
T Consensus 29 Q~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~~-~~~~f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAGT-TNAAF-----EALSAVTSGVKDLREII 93 (436)
T ss_pred hHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHHh-hCCce-----EEeccccccHHHHHHHH
Confidence 4456666555555544 2 55677889999999999999999987 44444 23333222111122222
Q ss_pred HHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEE--eCChHHH--h-hcCCCCc
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVT--TRSMVVA--L-TMGSGKN 295 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT--tR~~~va--~-~~~~~~~ 295 (368)
+... +.....++.+|.+|.|...+..+-+.+ ||...+|.-|+|- |-++... . ...-..+
T Consensus 94 e~a~-------------~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 94 EEAR-------------KNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred HHHH-------------HHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 2221 111112799999999987655454444 4445678777764 4443221 1 1112258
Q ss_pred eeCCCCChhHHHHHHHHhhcCCCC-CC-CCccH-HHHHHHHHHHcCCChHHH
Q 044878 296 YELKLLSDDDCWSVFVNHAFEGRD-AG-THGNF-ESTRQRVVEKRKGLPLAA 344 (368)
Q Consensus 296 ~~l~~L~~~~~~~lf~~~~~~~~~-~~-~~~~l-~~~~~~I~~~c~GlPLai 344 (368)
+.++||+.++-.+++.+.+..... .. ....+ +++...|+..++|---++
T Consensus 158 f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 158 FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 999999999999999884422211 11 11112 446677888888854433
No 16
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.96 E-value=4.5e-09 Score=84.28 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=77.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhcccc-----ccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHH---
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEA-----FEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLK--- 239 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~--- 239 (368)
+.+++.|+|++|+|||++++.+.+.. ... -..++|+.++...+...+...|+..++.......+...+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL-NAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH-HHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh-HHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 45789999999999999999999873 111 235569998888899999999999999876654444444444
Q ss_pred -HHhcCeeEEEEEcCccC-ChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 240 -LKEAKKFLIVLDDVWDK-KYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 240 -l~~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
+.+.+..+||+|++... +...++.+...+. ..+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 34436679999999765 5556666655443 567788877664
No 17
>PRK08727 hypothetical protein; Validated
Probab=98.92 E-value=1e-07 Score=84.47 Aligned_cols=170 Identities=18% Similarity=0.107 Sum_probs=100.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
..+.|+|+.|+|||+|++.+++.. ......+.+++..+ ....+ ......+. ..-+||
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~~~~~------~~~~~--------------~~~~~~l~--~~dlLi 98 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYLPLQA------AAGRL--------------RDALEALE--GRSLVA 98 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEeHHH------hhhhH--------------HHHHHHHh--cCCEEE
Confidence 459999999999999999998874 22233455665332 11111 11111221 445999
Q ss_pred EEcCccCCh-hhHH-HhhhhcCC-CCCCcEEEEEeCCh---------HHHhhcCCCCceeCCCCChhHHHHHHHHhhcCC
Q 044878 250 LDDVWDKKY-ELWQ-ALKSPFMA-GAPGSRIIVTTRSM---------VVALTMGSGKNYELKLLSDDDCWSVFVNHAFEG 317 (368)
Q Consensus 250 lDdvw~~~~-~~~~-~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 317 (368)
|||+..... ..|. .+...+.. ..+|..||+|++.. ++...+.....+++.+++.++-..++.+++...
T Consensus 99 IDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 99 LDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred EeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 999964321 2343 23332221 13466799999852 222333344688999999999999999876432
Q ss_pred CCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh-----c--CCCChHHHHHHHhc
Q 044878 318 RDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL-----R--SKQRIDEWRAILDS 366 (368)
Q Consensus 318 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L-----~--~~~~~~~W~~vl~~ 366 (368)
.- .--+++..-|++.|.|-.-.+..+-..| . .+.+....++++..
T Consensus 179 ~l----~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 179 GL----ALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred CC----CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 11 1225666778899987665552222221 1 22466777777654
No 18
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=8.2e-09 Score=100.83 Aligned_cols=193 Identities=15% Similarity=0.095 Sum_probs=114.5
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+.+.. ....+...+|.|.+... +..-...-+
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 357898888888888887632 23566899999999999999999875 33333334444432110 000000000
Q ss_pred HHhccC-CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHHhhcCC-C
Q 044878 221 ESITLS-SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVALTMGS-G 293 (368)
Q Consensus 221 ~~l~~~-~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va~~~~~-~ 293 (368)
..+... .....+...+...+... ++-++|||+++..+...++.+...+......+.+|++|.. ..+...+.. .
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc 167 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcce
Confidence 000100 00111222232222221 5668999999877777788888887655455565555543 333222222 2
Q ss_pred CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044878 294 KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAA 344 (368)
Q Consensus 294 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 344 (368)
..+++.+++.++....+.+.+....-.. -++....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4799999999999999988764322111 2456677999999988654
No 19
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.92 E-value=7.4e-08 Score=90.27 Aligned_cols=196 Identities=17% Similarity=0.107 Sum_probs=109.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+.+......+. ..+.+.++...+ .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~ 86 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD--QGKKYLV 86 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh--cchhhhh
Confidence 46889999999998888652 33457899999999999999998874222222 223333332110 0000000
Q ss_pred H------HhccC-CCCCCChHHHHH---HHHhc-----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH
Q 044878 221 E------SITLS-SCGLTDLNSVQL---KLKEA-----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 221 ~------~l~~~-~~~~~~~~~l~~---~l~~~-----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 285 (368)
. .+... .........+.. ..... .+-+||+||+...+......+...+......+++|+||....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 0 00000 000011111211 22111 345899999976654455566665544445567888775432
Q ss_pred -HHhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 286 -VALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 286 -va~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
+...+. ....+.+.+++.++...++...+-...-. --.+....+++.++|.+-.+.....
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~----~~~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD----YDDDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211121 12468899999999988888765332211 1145667788888887666544433
No 20
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.2e-07 Score=89.57 Aligned_cols=190 Identities=13% Similarity=0.133 Sum_probs=111.1
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.+.+.+..+. -...+.++|+.|+||||+|+.+.+.. ....... .++..-....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHh
Confidence 468899999999998887532 23567899999999999999998874 2211110 0000000011111
Q ss_pred HHhc-------cCC-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHH
Q 044878 221 ESIT-------LSS-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVA 287 (368)
Q Consensus 221 ~~l~-------~~~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va 287 (368)
.... ... ....+...+...+... ++-++|+|++...+...++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 1100 000 0111122222222211 44589999998777667888887776655666777776543 232
Q ss_pred hhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 288 LTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 288 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
..+. -...+++.|++.++....+...+...... --++....|++.++|.|-.+...
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~----i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESID----TDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 12578999999999988887765332211 11455677899999988644333
No 21
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=7.1e-08 Score=95.00 Aligned_cols=195 Identities=15% Similarity=0.121 Sum_probs=113.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.. ....-...- + .+..+..-...+.|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~-~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I-TAQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C-CCCCCcccHHHHHHH
Confidence 468999999999999997643 23567889999999999999998875 211000000 0 000011011111111
Q ss_pred HH-------hccC-CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHH
Q 044878 221 ES-------ITLS-SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVA 287 (368)
Q Consensus 221 ~~-------l~~~-~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 287 (368)
.. +... .....++.++.+.+... +.-++|||++...+...++.|...|..-..++.+|++|.+ ..+.
T Consensus 89 aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 00 0000 01112223333332221 4558999999888878888888877654455665555554 3333
Q ss_pred hhcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 288 LTMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 288 ~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
..+.+. ..+.+.+++.++..+.+.+.+-...-. .-.+..+.|++.++|.|..+..+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222111 478999999999988887765322111 11344577899999999755544
No 22
>PRK09087 hypothetical protein; Validated
Probab=98.87 E-value=2.5e-07 Score=81.34 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=97.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
.+.+.|+|+.|+|||+|++.+++.. . ..+++.. .+..+++..+ ..-+|
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-~-----~~~i~~~------~~~~~~~~~~--------------------~~~~l 91 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-D-----ALLIHPN------EIGSDAANAA--------------------AEGPV 91 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-C-----CEEecHH------HcchHHHHhh--------------------hcCeE
Confidence 4568999999999999999888762 1 1133221 1111121111 12378
Q ss_pred EEEcCccC--ChhhHHHhhhhcCCCCCCcEEEEEeCC---------hHHHhhcCCCCceeCCCCChhHHHHHHHHhhcCC
Q 044878 249 VLDDVWDK--KYELWQALKSPFMAGAPGSRIIVTTRS---------MVVALTMGSGKNYELKLLSDDDCWSVFVNHAFEG 317 (368)
Q Consensus 249 VlDdvw~~--~~~~~~~l~~~l~~~~~gs~IivTtR~---------~~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 317 (368)
++||+... +...+-.+...+. ..|..||+|++. ++....+....++++++++.++-.+++.+.+-..
T Consensus 92 ~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 92 LIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR 169 (226)
T ss_pred EEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc
Confidence 88999543 2222223333222 346789998874 3344445566789999999999999999887432
Q ss_pred CCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh-------cCCCChHHHHHHHh
Q 044878 318 RDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL-------RSKQRIDEWRAILD 365 (368)
Q Consensus 318 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L-------~~~~~~~~W~~vl~ 365 (368)
. . .--+++..-|++.+.|.+-++..+-..| ..+.+....+++++
T Consensus 170 ~-~---~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 170 Q-L---YVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred C-C---CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 1 1 1225677778888888877776433222 22356777777775
No 23
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.86 E-value=8.8e-07 Score=89.06 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=115.4
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccc---cCeEEEEecCC---CCHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAF---EPKAWVCVSDD---FDVL 213 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F---~~~~wv~vs~~---~~~~ 213 (368)
-++++|++..+..+...+.. .....+.|+|++|+||||||+.+++.. ....+ ....|+.+... .+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HHhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 35689999999998887753 334568999999999999999998764 22222 23456655431 1222
Q ss_pred HHHHHH---------------HHHhccCC------------------CCCCC---hHHHHHHHHhcCeeEEEEEcCccCC
Q 044878 214 RISKAI---------------LESITLSS------------------CGLTD---LNSVQLKLKEAKKFLIVLDDVWDKK 257 (368)
Q Consensus 214 ~l~~~i---------------l~~l~~~~------------------~~~~~---~~~l~~~l~~~kr~LlVlDdvw~~~ 257 (368)
.+...+ +...+... ....+ ...+...+.. ++++++-|+.|..+
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~-~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLED-KRVEFSSSYYDPDD 305 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhh-CeEEeecceeccCC
Confidence 221111 11111100 00111 1122222322 78888888777766
Q ss_pred hhhHHHhhhhcCCCCCCcEEEE--EeCChHH-HhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHH
Q 044878 258 YELWQALKSPFMAGAPGSRIIV--TTRSMVV-ALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRV 333 (368)
Q Consensus 258 ~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~v-a~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I 333 (368)
...|+.+...+....+...+++ ||++... ...+. -...+.+.|++.++.+.++.+.+-... ... -+++...|
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~l---s~eal~~L 381 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHL---AAGVEELI 381 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHH
Confidence 6678888777766555555555 5554321 11111 113678999999999999998763221 111 13455556
Q ss_pred HHHcCCChHHHHHHHHH
Q 044878 334 VEKRKGLPLAARALGGL 350 (368)
Q Consensus 334 ~~~c~GlPLai~~~~~~ 350 (368)
.+.+..-+-|+..++.+
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 66666557777766544
No 24
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.6e-07 Score=87.07 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=115.6
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-----ccccccCeEEEEe-cCCCCHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-----LTEAFEPKAWVCV-SDDFDVLRIS 216 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-----~~~~F~~~~wv~v-s~~~~~~~l~ 216 (368)
+++|.+..++.+...+..+. -.....++|+.|+||||+|+.+++.. ...|+|...|... +....+.+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 57888888899999886542 34577899999999999999999863 2345665555442 23333333 2
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHH-hhcCC-CC
Q 044878 217 KAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVA-LTMGS-GK 294 (368)
Q Consensus 217 ~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va-~~~~~-~~ 294 (368)
+++.+.+...... .++-++|+|++...+...++.+...+.....++.+|++|.+.+.. ..+.+ ..
T Consensus 79 r~~~~~~~~~p~~-------------~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 79 RNIIEEVNKKPYE-------------GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHHHHHhcCccc-------------CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 3333333221100 156678888887777788999999998777889999888765421 11111 25
Q ss_pred ceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044878 295 NYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAAR 345 (368)
Q Consensus 295 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 345 (368)
.+++.+++.++....+.+.. .. .. .+....++..++|.|.-+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~-~~---~~----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKY-ND---IK----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHh-cC---CC----HHHHHHHHHHcCCCHHHHH
Confidence 78999999999877665543 11 01 2335668889999886554
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=1.2e-07 Score=94.78 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=112.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.. ....+.. ..+..-..++.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~-------~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS-------QPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC-------CCCcccHHHHHHh
Confidence 468999999999999987642 23456799999999999999998874 2221110 0111111111111
Q ss_pred HH-----hccCCC---CCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HH
Q 044878 221 ES-----ITLSSC---GLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VA 287 (368)
Q Consensus 221 ~~-----l~~~~~---~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va 287 (368)
.. +..+.. ...++..+++.+... +.-++|||++...+...|+.|...+..-....++|+||.+.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000 111222222222211 445889999988887788988888766556778888777643 22
Q ss_pred hhcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHH
Q 044878 288 LTMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARA 346 (368)
Q Consensus 288 ~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~ 346 (368)
..+.+. ..+.+.+++.++..+.+.+.+-...-. --.+....|++.++|..- |+.+
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~----id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA----FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 111111 478999999999998888765322111 124556778999988654 5544
No 26
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.86 E-value=4.5e-08 Score=84.07 Aligned_cols=182 Identities=15% Similarity=0.173 Sum_probs=100.0
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
-.+|+|.++-+..+.-++.....++ +.+.-+.+|||+|+||||||+.+.+. ....|. +.+.+. .
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e-~~~~~~---~~sg~~-i---------- 86 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRG-EALDHMLFYGPPGLGKTTLARIIANE-LGVNFK---ITSGPA-I---------- 86 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTT-S---EEEEESSTTSSHHHHHHHHHHH-CT--EE---EEECCC------------
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcC-CCcceEEEECCCccchhHHHHHHHhc-cCCCeE---eccchh-h----------
Confidence 4679999988888665554321111 45778899999999999999999998 444442 222111 0
Q ss_pred HHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhcCCC--------CC-----------CcEEEEE
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPFMAG--------AP-----------GSRIIVT 280 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~-----------gs~IivT 280 (368)
.....+...+... ++-+|.+|++...+...-+.+.+++.++ ++ -+-|=.|
T Consensus 87 ----------~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 87 ----------EKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -----------SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred ----------hhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 1111122222221 5568888999887665555565555322 11 1234457
Q ss_pred eCChHHHhhcCCC--CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 044878 281 TRSMVVALTMGSG--KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLR 352 (368)
Q Consensus 281 tR~~~va~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 352 (368)
||..-+....... -..+|+..+.+|-..+..+.+-.-. .+--++.+.+|++.|.|-|--+.-+-...+
T Consensus 157 Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 157 TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred ccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 7765544433332 2458999999999998887663221 123467889999999999986655544443
No 27
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.85 E-value=3.7e-08 Score=79.96 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=71.3
Q ss_pred ecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhc
Q 044878 145 YGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESIT 224 (368)
Q Consensus 145 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~ 224 (368)
+|++.....+...+... ..+.+.|+|++|+|||||++.+++.. ...-..++++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANEL-FRPGAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHh-hcCCCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 36778888888887652 34578899999999999999999973 2222345666655433322211111000
Q ss_pred cCCCCCCChHHHHHHHH-hcCeeEEEEEcCccCChhhHHHhhhhcCCC------CCCcEEEEEeCChH
Q 044878 225 LSSCGLTDLNSVQLKLK-EAKKFLIVLDDVWDKKYELWQALKSPFMAG------APGSRIIVTTRSMV 285 (368)
Q Consensus 225 ~~~~~~~~~~~l~~~l~-~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~IivTtR~~~ 285 (368)
......... ..++.+|++||++.........+...+... ..+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111111 117789999999754222333333333322 35778888887644
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.84 E-value=3.2e-07 Score=85.28 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=108.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEe--cCCCCHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCV--SDDFDVLRISKAI 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~v--s~~~~~~~l~~~i 219 (368)
.+++|+++.++.+..++... ..+.+.++|+.|+||||+|+.+.+......+.. .++.+ +...... ...+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchH-HHHHH
Confidence 45889999999999988652 334579999999999999999998742222221 22332 2222211 12222
Q ss_pred HHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HHhhc-CCCCcee
Q 044878 220 LESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VALTM-GSGKNYE 297 (368)
Q Consensus 220 l~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~~-~~~~~~~ 297 (368)
+..+....+.. ...+-+|++|++..........+...+......+.+|+++.... +.... .....++
T Consensus 89 i~~~~~~~~~~-----------~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 89 IKEFARTAPVG-----------GAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHHHHhcCCCC-----------CCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 22221110000 01356899999976655556667766655455567777764321 11111 1123689
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 298 LKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 298 l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
+.+++.++....+...+....-. --++....+++.++|.+--+..
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~----i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIE----ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 99999999988888776332211 1145667788999998776443
No 29
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.82 E-value=1.5e-07 Score=94.73 Aligned_cols=210 Identities=9% Similarity=0.025 Sum_probs=120.9
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-c---cccccC--eEEEEecCCCCHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-L---TEAFEP--KAWVCVSDDFDVLR 214 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~---~~~F~~--~~wv~vs~~~~~~~ 214 (368)
|..+.||++++++|...|...-... ....++.|.|++|+|||+.++.|.+.. . ...... +++|....-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 6789999999999999886532111 334678899999999999999998763 1 122222 34555555557778
Q ss_pred HHHHHHHHhccCCCC-CCChHHHHHHHH----hc--CeeEEEEEcCccCChhhHHHhhhhcCC-CCCCcEEEE--EeCCh
Q 044878 215 ISKAILESITLSSCG-LTDLNSVQLKLK----EA--KKFLIVLDDVWDKKYELWQALKSPFMA-GAPGSRIIV--TTRSM 284 (368)
Q Consensus 215 l~~~il~~l~~~~~~-~~~~~~l~~~l~----~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~Iiv--TtR~~ 284 (368)
++..|..++....+. ......+...+- .. ...+||||++.......-+.|...|.. ...+++|++ +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 888888888544332 222222222222 21 345899999964321111223322321 124556554 33322
Q ss_pred H--------HHhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 044878 285 V--------VALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLR 352 (368)
Q Consensus 285 ~--------va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 352 (368)
+ +...++ ...+...|.+.++-.+++..++-.....-....++-+++.++...|-.=.|+.++-....
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 2 111122 124667999999999999998853222222234455555555545556666666554443
No 30
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=3.5e-07 Score=89.25 Aligned_cols=192 Identities=14% Similarity=0.119 Sum_probs=113.9
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccC-eEEEEecCCCCHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEP-KAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~-~~wv~vs~~~~~~~l~~~i 219 (368)
.+++|.+..+..|...+..+. -...+.++|+.|+||||+|+.+++.. ....... ..+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 467899998888888776532 23567899999999999999999875 2211100 000000000 011111
Q ss_pred HHH-------hccC-CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEE-EeCChHH
Q 044878 220 LES-------ITLS-SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIV-TTRSMVV 286 (368)
Q Consensus 220 l~~-------l~~~-~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~v 286 (368)
... +... .....++..+....... ++-++|+|+++..+...|+.+...+......+.+|+ ||....+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 111 0000 01112233333332221 567899999998877889999888876555666654 4444444
Q ss_pred HhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 287 ALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 287 a~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
...+.. ...+++.+++.++....+...+-...-. --.+....|++.++|.+--+..
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~----ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK----TDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 433322 2468999999999999998877432211 1134556789999998755543
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=2.4e-07 Score=94.26 Aligned_cols=189 Identities=13% Similarity=0.131 Sum_probs=112.9
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccC-eEEEEecCCCCHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEP-KAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~-~~wv~vs~~~~~~~l~~~i 219 (368)
.+++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+.. ....... .+-.| .....+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C--------~sC~~i 82 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC--------SSCVEI 82 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc--------hHHHHH
Confidence 468899999999999887632 23455799999999999999999875 2211110 00000 000011
Q ss_pred HHH-------hccC-CCCCCChHHHHHHHHh----cCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHH
Q 044878 220 LES-------ITLS-SCGLTDLNSVQLKLKE----AKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVV 286 (368)
Q Consensus 220 l~~-------l~~~-~~~~~~~~~l~~~l~~----~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~v 286 (368)
... +... .....++..+...+.. .++-++|||++...+...++.|...+..-....++|++|.+ ..+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 000 0000 0011122223322221 15669999999888888888888888655556666666554 333
Q ss_pred HhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 287 ALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 287 a~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
...+-. -..|++.+|+.++....+.+.+-...- ..-.+....|++.++|.|--+..+
T Consensus 163 l~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI----~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 163 PVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL----PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred hHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222111 157999999999999888876532211 112455677999999988654444
No 32
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=3.2e-07 Score=90.62 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=113.1
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+.+.. ... ++.. ..++.-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 468999999999999997642 24677899999999999999998874 211 1100 0011111111111
Q ss_pred HHh-------ccC-CCCCCChHHHHHHHHh----cCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HH
Q 044878 221 ESI-------TLS-SCGLTDLNSVQLKLKE----AKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VA 287 (368)
Q Consensus 221 ~~l-------~~~-~~~~~~~~~l~~~l~~----~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va 287 (368)
..- ... .....+...++..... .+.-++|+|++...+....+.+...+.....+..+|++|.+.. +.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 100 000 0011112222222211 1455899999988777788888887766556677887776532 22
Q ss_pred hh-cCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 288 LT-MGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 288 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.. ..-...+++.+++.++....+.+.+-...-. --.+....|++.++|.+-.+..+
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~----id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA----ADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1122578999999999988887766332211 12455677899999987555443
No 33
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.79 E-value=1.2e-08 Score=86.76 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=33.1
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.|+||+++++++...|..... ...+.+.|+|++|+|||+|.+.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~---~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQS---GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS--------EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999952221 567899999999999999999999884
No 34
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=6.5e-07 Score=86.93 Aligned_cols=200 Identities=17% Similarity=0.134 Sum_probs=113.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc--cc-----------------Ce
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA--FE-----------------PK 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~--F~-----------------~~ 201 (368)
.+++|.+.....|...+..+. -...+.++|++|+||||+|+.+.+.. .... +. ..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468899888888887776532 23567899999999999999998864 2110 10 11
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe
Q 044878 202 AWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT 281 (368)
Q Consensus 202 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt 281 (368)
..+..+.......+ +.+.+.+.... ...++-++|+|++...+....+.+...+........+|++|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~~p-------------~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGYRP-------------MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhhCh-------------hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 11111111111111 12221111000 00155699999997665556677777665433344444444
Q ss_pred CC-hHHHhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHHHHhcC---CC
Q 044878 282 RS-MVVALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG-LPLAARALGGLLRS---KQ 355 (368)
Q Consensus 282 R~-~~va~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~~L~~---~~ 355 (368)
.+ ..+...+. -...+++.+++.++....+...+....-. --++....|++.++| ++.++..+-.+... +-
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~----i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~I 230 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE----IDREALSFIAKRASGGLRDALTMLEQVWKFSEGKI 230 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence 43 33433222 22578999999999888887776332211 114556778887754 56777777654432 23
Q ss_pred ChHHHHHHH
Q 044878 356 RIDEWRAIL 364 (368)
Q Consensus 356 ~~~~W~~vl 364 (368)
+.+....++
T Consensus 231 t~e~V~~~l 239 (472)
T PRK14962 231 TLETVHEAL 239 (472)
T ss_pred CHHHHHHHH
Confidence 556666554
No 35
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.77 E-value=3.8e-07 Score=80.84 Aligned_cols=169 Identities=16% Similarity=0.110 Sum_probs=100.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
...+.|+|+.|+|||+|++.+++.. ...-..+.++++..... ....+.+.+. .--+|
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~-~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~--~~dll 101 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL-SQRGRAVGYVPLDKRAW--------------------FVPEVLEGME--QLSLV 101 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh--hCCEE
Confidence 3578999999999999999999874 22223445555533100 0111122222 12389
Q ss_pred EEEcCccCCh-hhHHH-hhhhcCC-CCCC-cEEEEEeCCh---------HHHhhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 249 VLDDVWDKKY-ELWQA-LKSPFMA-GAPG-SRIIVTTRSM---------VVALTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 249 VlDdvw~~~~-~~~~~-l~~~l~~-~~~g-s~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
+|||+..... ..|+. +...+.. ...| .++|+||+.. ++...+....++++.+++.++-.+++.+++.
T Consensus 102 iiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 102 CIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred EEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 9999965321 34442 3333321 1234 3799998754 3344455667899999999999999888663
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhc-----C-C-CChHHHHHHH
Q 044878 316 EGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLR-----S-K-QRIDEWRAIL 364 (368)
Q Consensus 316 ~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~-----~-~-~~~~~W~~vl 364 (368)
... . .--+++..-|++.+.|..-++..+-..|. . + .+....+.++
T Consensus 182 ~~~-~---~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 182 LRG-F---ELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 (235)
T ss_pred HcC-C---CCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 321 1 12266778899999987666655544432 1 2 3556666554
No 36
>PLN03025 replication factor C subunit; Provisional
Probab=98.77 E-value=4.7e-07 Score=84.16 Aligned_cols=183 Identities=13% Similarity=0.122 Sum_probs=107.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccC-eEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEP-KAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.++.++.|..++... +.+.+.++|++|+||||+|+.+.+......|.. .+-+..++..+.. ..++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHH
Confidence 35788888888887776542 334477999999999999999998742222321 1112222222222 233333
Q ss_pred HHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcC-CCCceeC
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMG-SGKNYEL 298 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~-~~~~~~l 298 (368)
..+....... ...+.-+++||++...+....+.+...+......+++|+++... .+-.... -...+++
T Consensus 86 ~~~~~~~~~~----------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 86 KMFAQKKVTL----------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred HHHHhccccC----------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 3221110000 00145689999998776666666666665444566777776542 2111111 1247899
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044878 299 KLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAAR 345 (368)
Q Consensus 299 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 345 (368)
.+++.++....+...+-...-.- -.+....|++.++|-.-.+.
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i----~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPY----VPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 99999999888887763322111 14556778899988764444
No 37
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.76 E-value=2.2e-07 Score=94.44 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=96.7
Q ss_pred CceecccccHH---HHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHH
Q 044878 142 PAVYGRDEDKD---RMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISK 217 (368)
Q Consensus 142 ~~~~Gr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~ 217 (368)
.+++|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+| +.++... ...+ .+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~-~~~~f-----~~lna~~~~i~d-ir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH-TRAHF-----SSLNAVLAGVKD-LR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH-hcCcc-----eeehhhhhhhHH-HH
Confidence 35788877664 45555554 34456789999999999999999987 44333 1111100 1111 11
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEE--eCChH--HHhhc-C
Q 044878 218 AILESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVT--TRSMV--VALTM-G 291 (368)
Q Consensus 218 ~il~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT--tR~~~--va~~~-~ 291 (368)
+++. .....+... ++.+|+|||++..+...++.+...+. .|+.++++ |.+.. +.... .
T Consensus 95 ~~i~-------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 95 AEVD-------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred HHHH-------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhc
Confidence 1111 111111111 56799999998766666666665443 35555554 33321 11111 1
Q ss_pred CCCceeCCCCChhHHHHHHHHhhcCCCC---CCCCccHHHHHHHHHHHcCCChH
Q 044878 292 SGKNYELKLLSDDDCWSVFVNHAFEGRD---AGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 292 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~---~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
-...+.+.+|+.++...++.+.+-.... .....--++....|++.+.|..-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 1247899999999999998876531000 00001124556778888888544
No 38
>PF13173 AAA_14: AAA domain
Probab=98.75 E-value=4.5e-08 Score=78.28 Aligned_cols=120 Identities=23% Similarity=0.213 Sum_probs=75.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
-+++.|.|+.|+|||||+++++.+.. .....+++...+.........+ ..+.+.+.... +..+|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~~~-------------~~~~~~~~~~~-~~~~i 65 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLADPD-------------LLEYFLELIKP-GKKYI 65 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhhhh-------------hHHHHHHhhcc-CCcEE
Confidence 36899999999999999999998732 3345667665553221100000 11111111111 67889
Q ss_pred EEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhc------CCCCceeCCCCChhHH
Q 044878 249 VLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVALTM------GSGKNYELKLLSDDDC 306 (368)
Q Consensus 249 VlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~------~~~~~~~l~~L~~~~~ 306 (368)
+||++... ..|......+.+..+..+|++|+.+......- +-...++|.||+..|.
T Consensus 66 ~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 66 FIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999665 46776666666555667999999887665331 1113689999998764
No 39
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=5.7e-07 Score=88.33 Aligned_cols=179 Identities=14% Similarity=0.112 Sum_probs=109.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc-------------------ccCe
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA-------------------FEPK 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~-------------------F~~~ 201 (368)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.. .... |...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368899999999998886532 23557789999999999999998763 2111 1112
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEE
Q 044878 202 AWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRI 277 (368)
Q Consensus 202 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 277 (368)
+++.......+ .+...+...+... ++-++|+|++...+...++.+...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22221111111 1222233222211 5669999999877777888888888765556666
Q ss_pred EEEeCC-hHHHhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044878 278 IVTTRS-MVVALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARAL 347 (368)
Q Consensus 278 ivTtR~-~~va~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 347 (368)
|++|.+ ..+...+. -...+++.+++.++....+.+.+-... . ..-+.....|++.++|.+- |+..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i---~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I---NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 655543 33332221 125789999999998877776542211 1 1124455678899999664 44444
No 40
>PRK05642 DNA replication initiation factor; Validated
Probab=98.74 E-value=5.1e-07 Score=79.96 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=94.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
...+.|+|+.|+|||+|++.+.+.. ...-..++|++..+ +... ...+.+.+... =+|
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~~~~------~~~~--------------~~~~~~~~~~~--d~L 101 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLPLAE------LLDR--------------GPELLDNLEQY--ELV 101 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEeeHHH------HHhh--------------hHHHHHhhhhC--CEE
Confidence 3568899999999999999998863 22223456665432 2111 12223333321 278
Q ss_pred EEEcCccCC-hhhHHH-hhhhcCC-CCCCcEEEEEeCChHH---------HhhcCCCCceeCCCCChhHHHHHHHHhhcC
Q 044878 249 VLDDVWDKK-YELWQA-LKSPFMA-GAPGSRIIVTTRSMVV---------ALTMGSGKNYELKLLSDDDCWSVFVNHAFE 316 (368)
Q Consensus 249 VlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~IivTtR~~~v---------a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 316 (368)
++||+.... ...|+. +...+.. ...|..+|+|++...- ...+....++++.+++.++-..++..++..
T Consensus 102 iiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 102 CLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred EEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 899996431 134543 4444432 2346788998875332 222334467899999999999999866643
Q ss_pred CCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 044878 317 GRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL 351 (368)
Q Consensus 317 ~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 351 (368)
.. . .--+++..-|++.+.|..-.+..+-..|
T Consensus 182 ~~-~---~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 182 RG-L---HLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred cC-C---CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 21 1 1125778889999999866665544443
No 41
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.74 E-value=1.4e-06 Score=82.36 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=110.2
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc--------------------cccC
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE--------------------AFEP 200 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~--------------------~F~~ 200 (368)
.+++|.+..++.+.+.+... .-...+.++|++|+||||+|+.+.+.. ... +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 46899999999999988653 234567899999999999999998764 111 111
Q ss_pred eEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcE
Q 044878 201 KAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSR 276 (368)
Q Consensus 201 ~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 276 (368)
..++..+...... +...+...+... ++-++|+|++...+....+.+...+......+.
T Consensus 88 ~~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 88 VIEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred EEEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 1122111111111 112222222211 455889999966555567777777755455667
Q ss_pred EEEEeCChH-HHhhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 277 IIVTTRSMV-VALTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 277 IivTtR~~~-va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
+|++|.+.. +...+ .-...+++.+++.++....+...+-...-.- -++....|++.++|.|..+....
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 777765543 22222 1225788999999998888877663221111 14567778999999987665544
No 42
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.71 E-value=4.6e-07 Score=80.00 Aligned_cols=154 Identities=23% Similarity=0.167 Sum_probs=89.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeE
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFL 247 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~L 247 (368)
....+.|+|+.|+|||+||+.+++...... ....+++..... .. + .... ..-+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~-~~~~~i~~~~~~------~~----~---------------~~~~-~~~~ 93 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG-RNARYLDAASPL------LA----F---------------DFDP-EAEL 93 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEehHHhH------HH----H---------------hhcc-cCCE
Confidence 345688999999999999999998742222 123344432211 00 0 0011 3457
Q ss_pred EEEEcCccCChhhHHHhhhhcCCC-CCCc-EEEEEeCChHHHh--------hcCCCCceeCCCCChhHHHHHHHHhhcCC
Q 044878 248 IVLDDVWDKKYELWQALKSPFMAG-APGS-RIIVTTRSMVVAL--------TMGSGKNYELKLLSDDDCWSVFVNHAFEG 317 (368)
Q Consensus 248 lVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~IivTtR~~~va~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~ 317 (368)
|++||+...+...-..+...+... ..|. .+|+|++...... .+.....+++.|++.++-..++.+.+-..
T Consensus 94 liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~ 173 (227)
T PRK08903 94 YAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAER 173 (227)
T ss_pred EEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 999999654333333444444321 2344 3666666433221 22223578999999987766666543221
Q ss_pred CCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 044878 318 RDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLR 352 (368)
Q Consensus 318 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 352 (368)
. . .--+++...+++.+.|.|..+..+...|.
T Consensus 174 ~-v---~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 174 G-L---QLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred C-C---CCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 1 1 11245677788899999999877776653
No 43
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=8e-07 Score=88.47 Aligned_cols=193 Identities=10% Similarity=0.109 Sum_probs=112.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccc--cCeEEEEecCCCCHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAF--EPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F--~~~~wv~vs~~~~~~~l~~~ 218 (368)
.+++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+.. ..... ..... ..++.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468898888888888887642 23567899999999999999997764 21110 00000 01111112222
Q ss_pred HHHH-------hccC-CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hH
Q 044878 219 ILES-------ITLS-SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MV 285 (368)
Q Consensus 219 il~~-------l~~~-~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~ 285 (368)
|... +... ..+.++..+++..+... +.-++|||++...+...++.+...+..-...+.+|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 2110 0000 00111222222222211 3448899999988888888888887665556666665543 33
Q ss_pred HHhhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 286 VALTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 286 va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
+...+ .-...+++.+++.++....+.+.+-...-.. -.+....|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 33222 1225789999999999888877653322111 1455677889999977655544
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=98.70 E-value=7.2e-07 Score=87.56 Aligned_cols=184 Identities=19% Similarity=0.146 Sum_probs=109.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+++|.+..++.+.+|+.....+ ...+.+.|+|++|+||||+|+.+.+.. . |+ .+-+..+...+. ..+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el-~--~~-~ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDY-G--WE-VIELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHc-C--CC-EEEEcccccccH-HHHHHHHH
Confidence 46899999999999998753321 236789999999999999999999973 1 22 222333432222 23333333
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh----hhHHHhhhhcCCCCCCcEEEEEeCChH-HHh-hc-CCCC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY----ELWQALKSPFMAGAPGSRIIVTTRSMV-VAL-TM-GSGK 294 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~IivTtR~~~-va~-~~-~~~~ 294 (368)
....... + ...++-+||||++..... ..+..+...+.. .+..||+|+.... ... .. ....
T Consensus 87 ~~~~~~s----l-------~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~ 153 (482)
T PRK04195 87 EAATSGS----L-------FGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACL 153 (482)
T ss_pred HhhccCc----c-------cCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccce
Confidence 2221110 0 001577999999976432 335666665542 3345666664421 111 11 2235
Q ss_pred ceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 295 NYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 295 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
.+++.+++.++....+.+.+....-... .++...|++.++|-.-.+.....
T Consensus 154 ~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq 204 (482)
T PRK04195 154 MIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQ 204 (482)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999988888776643222111 45567788888886665544333
No 45
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.1e-07 Score=91.05 Aligned_cols=191 Identities=13% Similarity=0.048 Sum_probs=112.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..+..|..++..+. -...+.++|+.|+||||+|+.+.+.. ....... ..+..... ...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~ 85 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEIT 85 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHH
Confidence 468899999999988887632 12457899999999999999999874 2111000 00000011 11111
Q ss_pred HHhc-------c-CCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeC-ChHHH
Q 044878 221 ESIT-------L-SSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTR-SMVVA 287 (368)
Q Consensus 221 ~~l~-------~-~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR-~~~va 287 (368)
.... . ...+..+...+...+... +.-++|+|++...+...++.+...+........+|++|. ...+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1111 0 001122233333333321 455899999988887888888877755444555554444 33333
Q ss_pred hhcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 288 LTMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 288 ~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
..+... ..|.+.+++.++..+.+.+.+-...-. --++....|++.++|.|--+..+-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~----~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ----YDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCChHHHHHHHH
Confidence 222222 468999999999888887766332211 124566789999999985544433
No 46
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=8.6e-07 Score=87.38 Aligned_cols=192 Identities=15% Similarity=0.174 Sum_probs=111.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+.+.. ... |... ..++.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHH
Confidence 468899999999999886542 23567899999999999999998874 222 2111 1111112222222
Q ss_pred HHhccC-------C-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeC-ChHHH
Q 044878 221 ESITLS-------S-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTR-SMVVA 287 (368)
Q Consensus 221 ~~l~~~-------~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR-~~~va 287 (368)
...... . ....+...+...+... ++-++|+|++...+...++.|...+......+.+|++|. ...+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 111100 0 0111222233222221 444799999987777778888887765444556655553 33332
Q ss_pred hhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHH
Q 044878 288 LTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARALGG 349 (368)
Q Consensus 288 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 349 (368)
..+ .-...+++.+++.++....+...+-....... .+....|++.++|.|- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is----~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE----DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 221 12257899999999998888776532211111 3456778999999664 4444443
No 47
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=7.6e-07 Score=88.85 Aligned_cols=191 Identities=13% Similarity=0.092 Sum_probs=113.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+.-++.|...+..+. -...+.++|+.|+||||+|+.+.+.. ....+. +..+..-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 468999999999998887632 23456789999999999999998875 221110 01111112222222
Q ss_pred HH-------hccCC-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHH
Q 044878 221 ES-------ITLSS-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVA 287 (368)
Q Consensus 221 ~~-------l~~~~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va 287 (368)
.. +.... ...++...++..+... ++-++|||++...+....+.|...+..-....++|++|.+. .+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 11 01000 1112233333333221 55689999998888788888888776655566666655543 332
Q ss_pred hhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 288 LTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 288 ~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
..+.+ -..|++.+|+.++....+.+.+-...- ..-......|++.++|.|-.+..+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22111 247899999999999888776522211 1113455678999999887554443
No 48
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.68 E-value=7e-08 Score=85.77 Aligned_cols=87 Identities=21% Similarity=0.136 Sum_probs=61.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC--CCHHHHHHHHHHHhccCCCCCCChH------HHH---
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD--FDVLRISKAILESITLSSCGLTDLN------SVQ--- 237 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~~~------~l~--- 237 (368)
-..++|+|++|+|||||++.+|++....+|+.++|++++.. +++.++++.+...+-....+..... ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999999999863348999999997776 7899999998544433322221111 111
Q ss_pred HHHHh-cCeeEEEEEcCcc
Q 044878 238 LKLKE-AKKFLIVLDDVWD 255 (368)
Q Consensus 238 ~~l~~-~kr~LlVlDdvw~ 255 (368)
+.+.. .++.++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 11111 2899999999943
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.1e-06 Score=85.06 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=111.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc-------------------ccCe
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA-------------------FEPK 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~-------------------F~~~ 201 (368)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.. .... +.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468899988888888876532 23468899999999999999998753 1111 1112
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEE
Q 044878 202 AWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRI 277 (368)
Q Consensus 202 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 277 (368)
+.+..+....+.+ ...+....... +.-++|+|++...+....+.+...+..-...+.+
T Consensus 88 ~eidaas~~~vdd------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 2222222222222 22222222211 4558999999877777788888888765566776
Q ss_pred EEEeC-ChHHHhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 278 IVTTR-SMVVALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 278 ivTtR-~~~va~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
|++|. ...+...+. -...+++.+++.++....+.+.+....-. --++....|++.++|.+-.+...
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~----i~~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE----HDEESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 66654 334433322 22578999999999988888876432211 11455667899999987654443
No 50
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.6e-06 Score=85.15 Aligned_cols=183 Identities=13% Similarity=0.077 Sum_probs=109.9
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccccc-------------------Ce
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFE-------------------PK 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~-------------------~~ 201 (368)
.+++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+.. ....+. -.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999997642 23457899999999999999998875 222111 11
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe
Q 044878 202 AWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT 281 (368)
Q Consensus 202 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt 281 (368)
+.+..+....+.++ +++++.+..... ..+.-++|+|++...+....+.+...+..-...+++|++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~p~-------------~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYAPT-------------KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhccc-------------cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 22221111222221 222222111000 0145588999998877778888888777655667777666
Q ss_pred CCh-HHHhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 282 RSM-VVALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 282 R~~-~va~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.+. .+...+. -...+++.+++.++....+.+.+-...-. --.+....|++.++|.|--+..+
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~----~~~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE----FENAALDLLARAANGSVRDALSL 220 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 443 2222211 12468899999988777666554222111 11344567889999988655443
No 51
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=5.9e-07 Score=85.92 Aligned_cols=196 Identities=10% Similarity=0.105 Sum_probs=112.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEE-ecCCCCHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVC-VSDDFDVLRISKAI 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~-vs~~~~~~~l~~~i 219 (368)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|..+.+.. ....+....|.. +...+..-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468899888888888887532 23457789999999999999998875 322111111111 01111111112222
Q ss_pred HHHhccC--------CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe-CChHH
Q 044878 220 LESITLS--------SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT-RSMVV 286 (368)
Q Consensus 220 l~~l~~~--------~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v 286 (368)
......+ .....++..+...+... ++-++|+|++...+...++.+...+......+.+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 2111100 00112233333333221 55689999998777678888888887655566766555 33333
Q ss_pred HhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 287 ALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 287 a~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
..... ....+++.+++.++....+...+-..... --.+....|++.++|.+--+..
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~----i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS----VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 32221 12468899999999888777765221111 1145667899999997754443
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.1e-06 Score=83.47 Aligned_cols=188 Identities=14% Similarity=0.101 Sum_probs=108.0
Q ss_pred ceecccccHHHHHHHHhcCCCC----CCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPS----DAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
+++|.+.-++.|...+..+... ...-..-+.++|+.|+||||+|+.+.... ....- + ..++.-...+
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~----~~Cg~C~~C~ 77 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----E----PGCGECRACR 77 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----C----CCCCCCHHHH
Confidence 5789888899999988764310 00134568899999999999999998764 21100 0 0000001111
Q ss_pred HHHHHhcc---------CCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 218 AILESITL---------SSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 218 ~il~~l~~---------~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
.+...-.. ......++..+.+.+... ++-++++|++...+....+.+...+.....++.+|++|.+.
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 11100000 000111122233322221 44588899998877777777777776555566666666653
Q ss_pred -HHHhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 285 -VVALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 285 -~va~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.+...+.+ -..+.+.+++.++....+.... + .. .+.+..++..++|.|.....+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~----~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G----VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C----CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 33322222 2578999999999988776432 1 11 344667899999999755433
No 53
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.65 E-value=1.5e-06 Score=76.14 Aligned_cols=189 Identities=16% Similarity=0.130 Sum_probs=107.6
Q ss_pred CCceeccc-ccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHH
Q 044878 141 EPAVYGRD-EDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 141 ~~~~~Gr~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~ 218 (368)
++.++|-. +..-.....+..... .....+.|+|+.|+|||.|.+++++...+.+-. .++++ +..++...
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~ 78 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIRE 78 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHH
Confidence 44455643 333444455544432 334457899999999999999999984222222 34454 34455666
Q ss_pred HHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChh-hHH-HhhhhcCC-CCCCcEEEEEeCCh---------HH
Q 044878 219 ILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYE-LWQ-ALKSPFMA-GAPGSRIIVTTRSM---------VV 286 (368)
Q Consensus 219 il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~-~~~-~l~~~l~~-~~~gs~IivTtR~~---------~v 286 (368)
+...+.. .....+...+. .-=+|+|||+...... .|. .+...+.. ...|.+||+|+... +.
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~--~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L 151 (219)
T PF00308_consen 79 FADALRD-----GEIEEFKDRLR--SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDL 151 (219)
T ss_dssp HHHHHHT-----TSHHHHHHHHC--TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHH
T ss_pred HHHHHHc-----ccchhhhhhhh--cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhh
Confidence 6666543 23344444443 4458999999764322 233 23333321 13566899999653 23
Q ss_pred HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 287 ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 287 a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
...+..+-++++.+++.++...++.+.+-...- +--+++..-|++.+.+..-.+..+-.
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 334445568999999999999999988743221 12366777788888876665554433
No 54
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.4e-06 Score=86.87 Aligned_cols=191 Identities=13% Similarity=0.122 Sum_probs=109.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.. ...... + ..+..-...+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~----~pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---G----EPCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---C----CCCcccHHHHHHh
Confidence 468999999999999987632 23567899999999999999998864 221110 0 0000000011110
Q ss_pred HH-----hccCCC---CCCChHHHHHHHHh----cCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HH
Q 044878 221 ES-----ITLSSC---GLTDLNSVQLKLKE----AKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VA 287 (368)
Q Consensus 221 ~~-----l~~~~~---~~~~~~~l~~~l~~----~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va 287 (368)
.. +..+.. ...++..+...... .++-++|||++...+....+.|...+..-...+++|++|.+.. +.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 000000 11122222222111 1556899999977666667777777755445667777765432 21
Q ss_pred hhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 288 LTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 288 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
..+ +--..+.+.+++.++....+.+.+-...-. --.+....|++.++|.+.-+..+-
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~----id~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA----YEPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHHhCCCHHHHHHHH
Confidence 111 111357888999999988888766332211 124556789999999886554443
No 55
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.5e-06 Score=81.26 Aligned_cols=194 Identities=16% Similarity=0.150 Sum_probs=116.0
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc--ccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA--FEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~--F~~~~wv~vs~~~~~~~l~~ 217 (368)
-..++|.++....+...+..+. -+..+.|+|+.|+||||||..+.+.. .... +... .....+......+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 4578999999999999987642 34568899999999999999998875 2110 2111 1111111112333
Q ss_pred HHHHH-------hccC--C-----CCCCChHH---HHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcE
Q 044878 218 AILES-------ITLS--S-----CGLTDLNS---VQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSR 276 (368)
Q Consensus 218 ~il~~-------l~~~--~-----~~~~~~~~---l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 276 (368)
.+... +... . ......++ +.+.+... ++-++|+|++...+....+.+...+..-.....
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 33222 1000 0 01112233 33333322 566899999988887778888877765444455
Q ss_pred EEEEeCCh-HHHhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 277 IIVTTRSM-VVALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 277 IivTtR~~-~va~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
+|++|... .+.....+ -..+++.|++.++...++.+..... . . -++....|++.++|.|..+..+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~-~-~----~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ-G-S----DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc-C-C----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55554433 33222211 1479999999999999988743111 1 1 13445678999999998766554
No 56
>PTZ00202 tuzin; Provisional
Probab=98.64 E-value=2.7e-06 Score=79.88 Aligned_cols=164 Identities=10% Similarity=0.117 Sum_probs=100.1
Q ss_pred cCCCCCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHH
Q 044878 137 IAGGEPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 137 ~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~ 216 (368)
.|+..+.|+||+.+...|...|...+. ..++++.|+|++|+|||||++.+... .. ...++.-+. +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~-l~----~~qL~vNpr--g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK-EG----MPAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc-CC----ceEEEECCC--CHHHHH
Confidence 344477999999999999999976443 34569999999999999999999976 22 113322222 679999
Q ss_pred HHHHHHhccCCCCC--CChHHHHHHHHhc-----CeeEEEEEcCccCChh-hHHHhhhhcCCCCCCcEEEEEeCChHHHh
Q 044878 217 KAILESITLSSCGL--TDLNSVQLKLKEA-----KKFLIVLDDVWDKKYE-LWQALKSPFMAGAPGSRIIVTTRSMVVAL 288 (368)
Q Consensus 217 ~~il~~l~~~~~~~--~~~~~l~~~l~~~-----kr~LlVlDdvw~~~~~-~~~~l~~~l~~~~~gs~IivTtR~~~va~ 288 (368)
+.++.+++.+.... .-+..+.+.+.+. ++.+||+-=-.-.+.. .+++. ..|.+...-|.|++---.+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 99999999743221 1224444444432 5566666533221111 12222 23444445678887654443321
Q ss_pred hcCC---CCceeCCCCChhHHHHHHH
Q 044878 289 TMGS---GKNYELKLLSDDDCWSVFV 311 (368)
Q Consensus 289 ~~~~---~~~~~l~~L~~~~~~~lf~ 311 (368)
.... ...|.+.+++.+++..+-.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~ 431 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQ 431 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHh
Confidence 1111 1357888888888876543
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.64 E-value=7.1e-08 Score=89.65 Aligned_cols=85 Identities=22% Similarity=0.196 Sum_probs=59.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC--CHHHHHHHHHHHhccCCCCCCChHHH---------HH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF--DVLRISKAILESITLSSCGLTDLNSV---------QL 238 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~~~~~~~~~~~l---------~~ 238 (368)
.-..|+|++|+||||||+.||+.....+|+.++||.+++.. .+.++++.+.-.+-....+....... .+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998633489999999999887 77788777763332222222111111 11
Q ss_pred HHHhc-CeeEEEEEcCc
Q 044878 239 KLKEA-KKFLIVLDDVW 254 (368)
Q Consensus 239 ~l~~~-kr~LlVlDdvw 254 (368)
.+... ++.||++|++.
T Consensus 250 ~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 250 RLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHcCCCEEEEEEChH
Confidence 22222 88999999994
No 58
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3.5e-06 Score=79.27 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=114.9
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEE---EEecCCCCHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAW---VCVSDDFDVLRIS 216 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~w---v~vs~~~~~~~l~ 216 (368)
-.+++|.+...+.|.+.+..+. -...+.++|+.|+||+|+|..+.+.. .........- ......+..-...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 4679999999999999887643 23468899999999999999988875 2221110000 0000000000111
Q ss_pred HHHHHHhccC---------C-----CCCCChHHHHH---HHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCc
Q 044878 217 KAILESITLS---------S-----CGLTDLNSVQL---KLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGS 275 (368)
Q Consensus 217 ~~il~~l~~~---------~-----~~~~~~~~l~~---~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 275 (368)
+.+...-..+ . ......+++.. .+... .+-++|+|++...+....+.+...+..-..++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 2221111000 0 01112333322 22211 56689999998888888888888776555566
Q ss_pred EEEEEeCChH-HHhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 276 RIIVTTRSMV-VALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 276 ~IivTtR~~~-va~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
.+|++|.+.. +...+.. -..+.+.+++.++..+++...... . . ......++..++|.|+.+..+.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~--~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L--P-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C--C-HHHHHHHHHHcCCCHHHHHHHh
Confidence 7777776653 3222222 247899999999999988775311 1 1 1112568999999998665543
No 59
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.63 E-value=3.9e-07 Score=82.64 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=94.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
..+..+.+||++|+||||||+.+.+.. +.+- ..+|..|-...-..-.+.|+++.... ..+. .+|.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~ts-k~~S--yrfvelSAt~a~t~dvR~ife~aq~~-----------~~l~-krkT 224 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTS-KKHS--YRFVELSATNAKTNDVRDIFEQAQNE-----------KSLT-KRKT 224 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhc-CCCc--eEEEEEeccccchHHHHHHHHHHHHH-----------Hhhh-ccee
Confidence 456778899999999999999999874 3221 45677665443333334444433210 1111 1889
Q ss_pred EEEEEcCccCChhhHHHhhhhcCCCCCCcEEEE--EeCChHHH---hhcCCCCceeCCCCChhHHHHHHHHhh--cCCCC
Q 044878 247 LIVLDDVWDKKYELWQALKSPFMAGAPGSRIIV--TTRSMVVA---LTMGSGKNYELKLLSDDDCWSVFVNHA--FEGRD 319 (368)
Q Consensus 247 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv--TtR~~~va---~~~~~~~~~~l~~L~~~~~~~lf~~~~--~~~~~ 319 (368)
+|.+|.|...+..+-+ .+||...+|+-++| ||-++... ..+.--.++.|++|+.++-..++.+.. ++..+
T Consensus 225 ilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dse 301 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSE 301 (554)
T ss_pred EEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhcccc
Confidence 9999999665433333 34666778887776 55554321 111222578999999999998887733 22211
Q ss_pred C--CCCcc-----HHHHHHHHHHHcCCChH
Q 044878 320 A--GTHGN-----FESTRQRVVEKRKGLPL 342 (368)
Q Consensus 320 ~--~~~~~-----l~~~~~~I~~~c~GlPL 342 (368)
. ..-++ -..+.+-++..|.|-.-
T Consensus 302 r~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 302 RPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 01111 23455667778888543
No 60
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.3e-06 Score=87.57 Aligned_cols=192 Identities=13% Similarity=0.105 Sum_probs=113.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.. ...... ....++.-..++.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 468999999999988887532 23456799999999999999998874 211110 001112222333333
Q ss_pred HHhccC-----C---CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHH
Q 044878 221 ESITLS-----S---CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVA 287 (368)
Q Consensus 221 ~~l~~~-----~---~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 287 (368)
.....+ . ....++..+...+... ++-++|+|++...+....+.|...+......+.+|++|.. ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 222111 0 0112222333333222 5668999999776666777787777655456666666543 2332
Q ss_pred hhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 288 LTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 288 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
..+. -...+.+.+++.++....+...+....... -.+....|++.++|.+..+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 224688999999988888877653322111 14556788999999886555443
No 61
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.61 E-value=2.9e-06 Score=72.57 Aligned_cols=150 Identities=14% Similarity=0.134 Sum_probs=91.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccc--------------------cccCeEEEEec-CCCCHHHHHHHHHHHhccC
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTE--------------------AFEPKAWVCVS-DDFDVLRISKAILESITLS 226 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~--------------------~F~~~~wv~vs-~~~~~~~l~~~il~~l~~~ 226 (368)
...+.++|+.|+||||+|+.+.+.. ... +.+. .++... .....+ ..+++++.+...
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~-~i~~i~~~~~~~ 91 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVD-QVRELVEFLSRT 91 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHH-HHHHHHHHHccC
Confidence 3678899999999999999998774 221 1111 111111 111111 111222222111
Q ss_pred CCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcC-CCCceeCCCCChh
Q 044878 227 SCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMG-SGKNYELKLLSDD 304 (368)
Q Consensus 227 ~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~-~~~~~~l~~L~~~ 304 (368)
.. ...+-++|+|++...+...++.+...+......+.+|++|++. .+...+. -...+++.+++.+
T Consensus 92 ~~-------------~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~ 158 (188)
T TIGR00678 92 PQ-------------ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEE 158 (188)
T ss_pred cc-------------cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHH
Confidence 00 0156689999997776667888888886655566777777653 2221111 1257999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHH
Q 044878 305 DCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLA 343 (368)
Q Consensus 305 ~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 343 (368)
+....+... + .. ++.+..|++.++|.|..
T Consensus 159 ~~~~~l~~~--g----i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 159 ALLQWLIRQ--G----IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHHHHHc--C----CC----HHHHHHHHHHcCCCccc
Confidence 988888776 1 11 35577899999999863
No 62
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=3.5e-06 Score=83.21 Aligned_cols=176 Identities=13% Similarity=0.091 Sum_probs=106.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc-------------------ccCe
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA-------------------FEPK 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~-------------------F~~~ 201 (368)
.+++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.. .... |...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468899999999999887632 23456799999999999999998764 2111 1111
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEE
Q 044878 202 AWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRI 277 (368)
Q Consensus 202 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 277 (368)
+++..+....+ .++..+...+... ++-++|+|++...+....+.+...+......+.+
T Consensus 91 ~ei~~~~~~~v------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQV------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCH------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 12211111111 1122222222111 5568999999877766788888877665556666
Q ss_pred EEEeCCh-HHHhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044878 278 IVTTRSM-VVALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAA 344 (368)
Q Consensus 278 ivTtR~~-~va~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 344 (368)
|++|.+. .+...+.. ...+++.+++.++....+.+.+-...-. .-+.....|++.++|.+--+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDA 217 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHH
Confidence 6666443 22211110 1468899999999888777655322111 11345577889999977533
No 63
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.60 E-value=3.8e-07 Score=81.03 Aligned_cols=177 Identities=15% Similarity=0.184 Sum_probs=113.2
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEE-EEecCCCCHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAW-VCVSDDFDVLRISKAI 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~w-v~vs~~~~~~~l~~~i 219 (368)
.++.|.+..+.-|.+.+.. ........+||+|.|||+-|..+.... -.+.|.+++- .++|..-... +.+
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr-- 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR-- 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh--
Confidence 4678888888888888876 346778899999999999999998876 5566765543 3444433222 000
Q ss_pred HHHhccCCCCCCChHHHHHHHHhc-----Cee-EEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHHhhcCC
Q 044878 220 LESITLSSCGLTDLNSVQLKLKEA-----KKF-LIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVALTMGS 292 (368)
Q Consensus 220 l~~l~~~~~~~~~~~~l~~~l~~~-----kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va~~~~~ 292 (368)
....+...+....... ++| .||||++...+.+.|..+...+......++.|+.+.. ..+...+..
T Consensus 107 --------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 107 --------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred --------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0112222222222111 554 6799999998889999999988776666775554433 222222111
Q ss_pred C-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC
Q 044878 293 G-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG 339 (368)
Q Consensus 293 ~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G 339 (368)
. ..|..++|..++...-+...+-...-..+ .+..+.|++.++|
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~G 222 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDG 222 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCC
Confidence 1 35789999999888888777743322222 3445668888887
No 64
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.6e-06 Score=78.41 Aligned_cols=204 Identities=13% Similarity=0.076 Sum_probs=122.7
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-C-eEEEEecCCCCHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-P-KAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~-~~wv~vs~~~~~~~l~~~ 218 (368)
|..+.+|+++++++...|...-.. ..+.-+.|+|.+|+|||+.++.|.+.. ..... . .++|.+-...+...++..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l-~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEEL-EESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHH-HhhhccCceEEEeeeeCCCHHHHHHH
Confidence 456999999999999887653222 223338899999999999999999984 22211 1 688888888899999999
Q ss_pred HHHHhccCCCCCCChHHHHHHHHhc-----CeeEEEEEcCccCChhhHHHhhhhcCCCCC-CcEEE--EEeCChHHHhhc
Q 044878 219 ILESITLSSCGLTDLNSVQLKLKEA-----KKFLIVLDDVWDKKYELWQALKSPFMAGAP-GSRII--VTTRSMVVALTM 290 (368)
Q Consensus 219 il~~l~~~~~~~~~~~~l~~~l~~~-----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~Ii--vTtR~~~va~~~ 290 (368)
|+.+++..........+..+.+.+. +.+++|||++.......-+.+...+..... .++|+ ..+-+......+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 9999974433334444444444333 788999999954321111333333332222 45443 334443332222
Q ss_pred CC-------CCceeCCCCChhHHHHHHHHhhcCCCCC--CCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 291 GS-------GKNYELKLLSDDDCWSVFVNHAFEGRDA--GTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 291 ~~-------~~~~~l~~L~~~~~~~lf~~~~~~~~~~--~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.. ...+...|-+.++-...+..++-..-.. -....++-++...+...|-.=.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 11 1236788889999999988877322111 122234444444444444444444443
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=2.7e-06 Score=87.61 Aligned_cols=189 Identities=13% Similarity=0.071 Sum_probs=110.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+.. ........ .+..-.-++.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~-------pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST-------PCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC-------CCcccHHHHHHH
Confidence 358899999999999987642 23457899999999999999998875 22211100 000000111111
Q ss_pred HH---------hccCC-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hH
Q 044878 221 ES---------ITLSS-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MV 285 (368)
Q Consensus 221 ~~---------l~~~~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~ 285 (368)
.. +.... ...+++..+++.+... +.-++|||++...+...++.|...+..-...+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11 00000 0112222222222211 4457899999888888888888888766566666665543 33
Q ss_pred HHhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 286 VALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 286 va~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
+...+.. ...|++.+++.++....+.+.+-... .. .-.+....|++.++|.+..+..
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~---id~eal~lLa~~sgGdlR~Al~ 220 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VP---VEPGVLPLVIRAGGGSVRDSLS 220 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 4333322 25789999999988887776542211 11 1134456789999998854443
No 66
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.57 E-value=3.3e-06 Score=81.78 Aligned_cols=166 Identities=9% Similarity=0.106 Sum_probs=100.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccc--cCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAF--EPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
..-+.|+|..|+|||+|++.+.+.. .... ..++++ +..+++..+...+.... .........+. ..-
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~---~~~~~~~~~~~--~~d 208 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYM------SGDEFARKAVDILQKTH---KEIEQFKNEIC--QND 208 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEE------EHHHHHHHHHHHHHHhh---hHHHHHHHHhc--cCC
Confidence 3458899999999999999999863 2211 122333 33456677766665311 11222222222 345
Q ss_pred EEEEEcCccCCh--hhHHHhhhhcCC-CCCCcEEEEEeCCh---------HHHhhcCCCCceeCCCCChhHHHHHHHHhh
Q 044878 247 LIVLDDVWDKKY--ELWQALKSPFMA-GAPGSRIIVTTRSM---------VVALTMGSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 247 LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
+|||||+..... ...+.+...|.. ...|..||+|+... .+...+..+-++.+.+++.++-..++.+++
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 899999965431 222344444432 13455788886643 223333455678899999999999999887
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 315 FEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
-... .. ..--+++..-|++.+.|.|-.+.-+.
T Consensus 289 ~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 289 KNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 4321 10 01225677889999999887766554
No 67
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=4e-06 Score=83.61 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=115.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccC--eEEEEecCCCCHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEP--KAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~--~~wv~vs~~~~~~~l~~~ 218 (368)
.+++|.+..++.|.+.+..+. -..-+.++|+.|+||||+|+.+.+.. ....... ..+- .+..-.-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 468999999999999987642 23467899999999999999998874 2211110 0000 0111111122
Q ss_pred HHHHhccC--------CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe-CChH
Q 044878 219 ILESITLS--------SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT-RSMV 285 (368)
Q Consensus 219 il~~l~~~--------~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~ 285 (368)
|...-..+ ..+..++.++...+... ++-++|+|++...+....+.|...+..-...+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211110 01122333343333322 45589999998777677888887776555667766655 3333
Q ss_pred HHhhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 286 VALTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 286 va~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
+...+. -...+++.+++.++....+.+.+-...... -.+....|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i----~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV----EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 332222 124789999999999888877653221111 13556778999999887665544
No 68
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.56 E-value=2.9e-06 Score=84.98 Aligned_cols=196 Identities=16% Similarity=0.163 Sum_probs=127.8
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-CCHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i 219 (368)
+.+.+-|. +|++.|... .+.+.+.|.-|+|.|||||+-..... ...-..+.|.+.+.. .++.++++-+
T Consensus 18 ~~~~v~R~----rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~--~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL--AADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccH----HHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh--cCcccceeEeecCCccCCHHHHHHHH
Confidence 34455554 455555543 46799999999999999999988753 222346899998764 5788888989
Q ss_pred HHHhccCCCC-------------CCChHHHHH----HHHhc-CeeEEEEEcCccCChhhHH-HhhhhcCCCCCCcEEEEE
Q 044878 220 LESITLSSCG-------------LTDLNSVQL----KLKEA-KKFLIVLDDVWDKKYELWQ-ALKSPFMAGAPGSRIIVT 280 (368)
Q Consensus 220 l~~l~~~~~~-------------~~~~~~l~~----~l~~~-kr~LlVlDdvw~~~~~~~~-~l~~~l~~~~~gs~IivT 280 (368)
+..+..-.+. ..++..+.. .+... ++..+||||..--+..... .+.-.+.....+-..|+|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 8888754332 123333333 33444 7889999998643323333 344444555678899999
Q ss_pred eCChHHHhhc---CCCCcee----CCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcC
Q 044878 281 TRSMVVALTM---GSGKNYE----LKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRS 353 (368)
Q Consensus 281 tR~~~va~~~---~~~~~~~----l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 353 (368)
||+..-.... -.+..++ .-.++.+|+-++|....... --+...+.+.+..+|=+-|+..++=.++.
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 9986422111 1112233 23678999999887764111 11344678999999999999999988884
Q ss_pred C
Q 044878 354 K 354 (368)
Q Consensus 354 ~ 354 (368)
+
T Consensus 240 ~ 240 (894)
T COG2909 240 N 240 (894)
T ss_pred C
Confidence 3
No 69
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.54 E-value=4.5e-06 Score=80.30 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=91.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccc-cCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFL 247 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~L 247 (368)
...+.|+|+.|+|||+|++.+++.....+. ..+++++ ..++...+...+... ........+.. .-+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~dl 202 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEEFKEKYRS--VDL 202 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHHHHHHHHh--CCE
Confidence 356889999999999999999998422221 2344553 334445555555321 23344444432 348
Q ss_pred EEEEcCccCChh-hH-HHhhhhcCC-CCCCcEEEEEeCCh-H--------HHhhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 248 IVLDDVWDKKYE-LW-QALKSPFMA-GAPGSRIIVTTRSM-V--------VALTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 248 lVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~IivTtR~~-~--------va~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
|+|||+...... .+ +.+...|.. ...|..+|+|+... . +...+....++++.+.+.++-..++.+.+-
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 999999653221 11 233333321 12355688887642 1 122223335789999999999999988874
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCChHH
Q 044878 316 EGRDAGTHGNFESTRQRVVEKRKGLPLA 343 (368)
Q Consensus 316 ~~~~~~~~~~l~~~~~~I~~~c~GlPLa 343 (368)
...- . --+++...|++.+.|.+-.
T Consensus 283 ~~~~-~---l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 283 EEGL-E---LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HcCC-C---CCHHHHHHHHHhcCCCHHH
Confidence 3221 1 1155666677777776553
No 70
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=5.4e-06 Score=82.25 Aligned_cols=194 Identities=12% Similarity=0.129 Sum_probs=112.1
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.. ....... ..++.-...+.+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 357888888888888886532 23567789999999999999999874 2211100 0111111111111
Q ss_pred HHhccC--------CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHH
Q 044878 221 ESITLS--------SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVA 287 (368)
Q Consensus 221 ~~l~~~--------~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 287 (368)
...... .....+...+.+.+... ++-+||||++...+...++.|...+..-.....+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 110000 00111122222222211 5668999999887777788888877543345566665554 3333
Q ss_pred hhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHHHHHh
Q 044878 288 LTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP-LAARALGGLL 351 (368)
Q Consensus 288 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~L 351 (368)
..+. -...+++.+++.++....+...+....... -.+....|++.++|.+ .|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2221 124789999999999888877654322111 1455677889999965 6777665544
No 71
>PRK06620 hypothetical protein; Validated
Probab=98.52 E-value=6.7e-06 Score=71.71 Aligned_cols=155 Identities=12% Similarity=-0.014 Sum_probs=89.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
+.+.|+|++|+|||+|++.+.+.. ..+ ++. ..+.. . . ..+ ..-+|+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~~~-----~~~--~~~~~---------------------~---~-~~~-~~d~ll 90 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-NAY-----IIK--DIFFN---------------------E---E-ILE-KYNAFI 90 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-CCE-----Ecc--hhhhc---------------------h---h-HHh-cCCEEE
Confidence 568999999999999999987762 211 111 10000 0 0 011 335789
Q ss_pred EEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-------HHhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCC
Q 044878 250 LDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-------VALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGT 322 (368)
Q Consensus 250 lDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-------va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 322 (368)
+||+........-.+...+. ..|..||+|++... ....+....++++++++.++-..++.+.+... ..
T Consensus 91 iDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l-- 165 (214)
T PRK06620 91 IEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SV-- 165 (214)
T ss_pred EeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CC--
Confidence 99995322111222222222 35778999987532 23334455689999999999888887776321 11
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHHHHhc-----CC--CChHHHHHHH
Q 044878 323 HGNFESTRQRVVEKRKGLPLAARALGGLLR-----SK--QRIDEWRAIL 364 (368)
Q Consensus 323 ~~~l~~~~~~I~~~c~GlPLai~~~~~~L~-----~~--~~~~~W~~vl 364 (368)
.--+++..-|++.+.|.--.+.-+-..|. .+ .+....+.++
T Consensus 166 -~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 166 -TISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred -CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 12266777888888886554443333221 12 3556666654
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=7e-06 Score=77.90 Aligned_cols=179 Identities=13% Similarity=0.146 Sum_probs=103.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccc-------cccCeEEEEec--CCCCH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTE-------AFEPKAWVCVS--DDFDV 212 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------~F~~~~wv~vs--~~~~~ 212 (368)
.+++|.+...+.+.+.+..+ .-...+.++|+.|+||||+|+.+.+..... .|...+ +.+. ...+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSV 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCH
Confidence 45789999999999988753 234578899999999999999997763111 111111 1111 11111
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHHhh-c
Q 044878 213 LRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVALT-M 290 (368)
Q Consensus 213 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va~~-~ 290 (368)
. -.+++++.+..... ..++-++++|++...+...++.+...+......+.+|++|.. ..+... .
T Consensus 91 ~-~i~~l~~~~~~~p~-------------~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 91 D-DIRNLIDQVRIPPQ-------------TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred H-HHHHHHHHHhhccc-------------cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1 11222222211000 004568999999766555677777666543344556655532 222211 1
Q ss_pred CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044878 291 GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAA 344 (368)
Q Consensus 291 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 344 (368)
.....+++.+++.++....+...+....-.-. .+....|++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 12247899999999988888776643221111 456677888888866533
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.51 E-value=5.9e-07 Score=85.08 Aligned_cols=180 Identities=15% Similarity=0.126 Sum_probs=99.2
Q ss_pred CCceecccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVL 213 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~ 213 (368)
..++.|+++.+++|.+.+...-.. +...++-+.++|++|+|||+||+.+++. ....| +.+.. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~-l~~~~-----~~v~~----~ 190 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE-TNATF-----IRVVG----S 190 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh-CCCCE-----Eecch----H
Confidence 457899999999998876432100 0023456889999999999999999987 33333 22221 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC-----------hhh---HHHhhhhcCC--CCCCcEE
Q 044878 214 RISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK-----------YEL---WQALKSPFMA--GAPGSRI 277 (368)
Q Consensus 214 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~-----------~~~---~~~l~~~l~~--~~~gs~I 277 (368)
.+.... ++ . .......+........+.+|+||+++... ... +..+...+.. ...+..|
T Consensus 191 ~l~~~~---~g-~--~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 191 ELVRKY---IG-E--GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred HHHHHh---hh-H--HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 111110 00 0 00011122222222367899999986421 111 2222222221 1246678
Q ss_pred EEEeCChHHHh-h-c---CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 278 IVTTRSMVVAL-T-M---GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 278 ivTtR~~~va~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
|.||...+... . . .-...+.+.+.+.++..++|..++....-. ...+ ...+++.+.|..
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCC----HHHHHHHcCCCC
Confidence 88887643211 1 1 123468899999999999998877443211 1112 345677777765
No 74
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.50 E-value=1.1e-05 Score=72.58 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=121.3
Q ss_pred CCceeccc---ccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc----ccCeEEEEecCCCCH
Q 044878 141 EPAVYGRD---EDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA----FEPKAWVCVSDDFDV 212 (368)
Q Consensus 141 ~~~~~Gr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----F~~~~wv~vs~~~~~ 212 (368)
.+.++|.. +-.+.|.++|..+.. .....+.|||.+|+|||++++++.... .... --+++.|.....++.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 45677764 344555555655433 556779999999999999999999764 2111 115667778888999
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHH----HHHHhcCeeEEEEEcCccC---ChhhHHHhhhhcC---CCCCCcEEEEEeC
Q 044878 213 LRISKAILESITLSSCGLTDLNSVQ----LKLKEAKKFLIVLDDVWDK---KYELWQALKSPFM---AGAPGSRIIVTTR 282 (368)
Q Consensus 213 ~~l~~~il~~l~~~~~~~~~~~~l~----~~l~~~kr~LlVlDdvw~~---~~~~~~~l~~~l~---~~~~gs~IivTtR 282 (368)
..+...|+.+++...........+. .-++..+--+||+|++.+. +...-..+...+. +.-.=+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 9999999999998765554444433 3334447779999999762 1112222322222 2223345666665
Q ss_pred ChHHHhhcC-----CCCceeCCCCCh-hHHHHHHHHhh--cCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 283 SMVVALTMG-----SGKNYELKLLSD-DDCWSVFVNHA--FEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 283 ~~~va~~~~-----~~~~~~l~~L~~-~~~~~lf~~~~--~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
..--+-..+ -..++.|.+-.. ++...|+.... +.-..... -...+++..|...++|+.=-+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHHHH
Confidence 433322111 124566666654 44455553322 22222222 23477889999999998755443
No 75
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.4e-05 Score=79.36 Aligned_cols=192 Identities=14% Similarity=0.104 Sum_probs=112.1
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.. .....+ + ..++.-...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 468899999999999987632 23457899999999999999999874 211110 0 0011001111111
Q ss_pred HH---------hccCC-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe-CChH
Q 044878 221 ES---------ITLSS-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT-RSMV 285 (368)
Q Consensus 221 ~~---------l~~~~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~ 285 (368)
.. +.... .+..+..++...+... ++-++|+|++...+....+.|...+..-...+.+|++| ....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10 00000 1122233333333221 55589999998887788888888887655566666555 4343
Q ss_pred HHhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHHH
Q 044878 286 VALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARALGG 349 (368)
Q Consensus 286 va~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 349 (368)
+...+.. ...+++.+++.++..+.+...+-....... .+....|++.++|.+- |+..+-.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~----~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD----DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3322221 257899999999988877776533221111 3455668888999774 4444433
No 76
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1.3e-05 Score=80.75 Aligned_cols=188 Identities=15% Similarity=0.183 Sum_probs=108.5
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccccc-C-eEEEE---ecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFE-P-KAWVC---VSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~-~-~~wv~---vs~~~~~~~l 215 (368)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.. .....+ + .+=.| ....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 358899999999999887642 23566789999999999999998764 221100 0 00000 00000000
Q ss_pred HHHHHHHhccCC-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEE-EEeCChHHHhh
Q 044878 216 SKAILESITLSS-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRII-VTTRSMVVALT 289 (368)
Q Consensus 216 ~~~il~~l~~~~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii-vTtR~~~va~~ 289 (368)
.+.... .+..+...++..+... ++-++|+|++...+...+..|...+..-...+.+| +|+....+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 000000 0112233444443332 55589999998777778888887776544455545 45444444322
Q ss_pred cC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 290 MG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 290 ~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
+. -...+++.+++.++....+...+-...-. .-.+.+..|++.++|.+--+..
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~----id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS----YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 21 12579999999999888887754322111 1134466788999887653333
No 77
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=2.6e-05 Score=76.22 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=107.2
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc-c------------------ccCe
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE-A------------------FEPK 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-~------------------F~~~ 201 (368)
.+++|.+.-...|.+.+.... -...+.++|+.|+||||+|+.+.... ... . |...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 457899999999999987642 23456789999999999999998763 110 0 0011
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEE
Q 044878 202 AWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRI 277 (368)
Q Consensus 202 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~I 277 (368)
..+..+... +..+...+...+... ++-++|+|++...+....+.+...+........+
T Consensus 91 ~eidaas~~------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNR------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCC------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 111111111 111223333333322 5569999999777666777777777654445555
Q ss_pred EEEe-CChHHHhhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 278 IVTT-RSMVVALTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 278 ivTt-R~~~va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
|++| +...+.... .-...+.+.+++.++....+...+-...-. .-.+....|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~----id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE----YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555 333332221 122478999999999888777765322211 113455678888999776554444
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=98.43 E-value=2.7e-05 Score=71.00 Aligned_cols=134 Identities=10% Similarity=0.036 Sum_probs=77.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
..+.++|++|+||||+|+.+++.. ....-...-|+.++.. + +.....+.. .......+.+...-+|
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~----l~~~~~g~~-----~~~~~~~l~~a~ggVL 126 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----D----LVGQYIGHT-----APKTKEVLKKAMGGVL 126 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----H----HHHHHhccc-----hHHHHHHHHHccCCEE
Confidence 347789999999999999998763 1122122235555521 2 222221111 1122233333345699
Q ss_pred EEEcCccC---------ChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhc--------CCCCceeCCCCChhHHHHHHH
Q 044878 249 VLDDVWDK---------KYELWQALKSPFMAGAPGSRIIVTTRSMVVALTM--------GSGKNYELKLLSDDDCWSVFV 311 (368)
Q Consensus 249 VlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~--------~~~~~~~l~~L~~~~~~~lf~ 311 (368)
+||++... ..+..+.+...+.....+.+||+++....+.... .....+.+.+++.++..+++.
T Consensus 127 fIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~ 206 (287)
T CHL00181 127 FIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAK 206 (287)
T ss_pred EEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHH
Confidence 99999542 1223344555554444556777777654443221 123478999999999999988
Q ss_pred HhhcC
Q 044878 312 NHAFE 316 (368)
Q Consensus 312 ~~~~~ 316 (368)
..+-.
T Consensus 207 ~~l~~ 211 (287)
T CHL00181 207 IMLEE 211 (287)
T ss_pred HHHHH
Confidence 87643
No 79
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.3e-05 Score=80.09 Aligned_cols=192 Identities=10% Similarity=0.105 Sum_probs=109.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEE-ecCCCCHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVC-VSDDFDVLRISKAI 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~-vs~~~~~~~l~~~i 219 (368)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.. ....++...|-. +...++.-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468899998898888886532 23457899999999999999998875 322111111111 01111111112222
Q ss_pred HHHhc-------c-CCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe-CChHH
Q 044878 220 LESIT-------L-SSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT-RSMVV 286 (368)
Q Consensus 220 l~~l~-------~-~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~v 286 (368)
...-. . .....+++..+.+.+... .+-++|+|++...+....+.|...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 11100 0 000112233333333221 55689999998777667888888876544555655544 43333
Q ss_pred Hhhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044878 287 ALTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 287 a~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
...+ .....+++.+++.++....+.+.+-..... --.+....|++.++|.+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~----I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ----IDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHhCCCHH
Confidence 3222 223579999999998887777655322111 114556778999999555
No 80
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=3.3e-05 Score=75.78 Aligned_cols=190 Identities=11% Similarity=0.099 Sum_probs=110.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|-+...+.|...+..+. -...+.++|+.|+||||+|+.+.+.. .....+. .++..-.-.+.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 468999988999999886532 33566899999999999999988764 1111000 0000000001110
Q ss_pred HHhcc-----CCCCCCChHHHHHHHHh---c----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHH
Q 044878 221 ESITL-----SSCGLTDLNSVQLKLKE---A----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVA 287 (368)
Q Consensus 221 ~~l~~-----~~~~~~~~~~l~~~l~~---~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va 287 (368)
..... +.......+.+...+.. . ++-++|+|++...+.+..+.+...+..-...+.+|++|.+. .+.
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 00000 00000112222222211 1 45589999998887778888888776655667777777553 221
Q ss_pred hhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 288 LTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 288 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.... -...+++.+++.++....+.+.+-...-. --++....|++.++|.+--+..+
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~----i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS----YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCcHHHHHHH
Confidence 1111 12478999999999988887665332211 11456677899999988555444
No 81
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=4.2e-06 Score=87.11 Aligned_cols=202 Identities=17% Similarity=0.133 Sum_probs=118.9
Q ss_pred eecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEE---EecCCC---CHHHHHH
Q 044878 144 VYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWV---CVSDDF---DVLRISK 217 (368)
Q Consensus 144 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv---~vs~~~---~~~~l~~ 217 (368)
++||+.+++.|...+..... ..-.++.+.|..|||||+|++.|.+.. .+.+...+-- ....+. ...+.++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i-~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPI-TQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHH-hccceeeeHhhcccccCCCchHHHHHHHH
Confidence 68999999999999877543 455799999999999999999999873 2222111111 111111 1223344
Q ss_pred HHHHHh-------------------ccCCC-----------------CC-----CC----hH-HHHHHH----HhcCeeE
Q 044878 218 AILESI-------------------TLSSC-----------------GL-----TD----LN-SVQLKL----KEAKKFL 247 (368)
Q Consensus 218 ~il~~l-------------------~~~~~-----------------~~-----~~----~~-~l~~~l----~~~kr~L 247 (368)
+++.++ +.... +. .. .+ .....+ .+.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 444433 11100 00 00 00 011111 1127999
Q ss_pred EEEEcCccCChhhHHHhhhhcCCCCC----CcEEEE--EeCCh--HHHhhcCCCCceeCCCCChhHHHHHHHHhhcCCCC
Q 044878 248 IVLDDVWDKKYELWQALKSPFMAGAP----GSRIIV--TTRSM--VVALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRD 319 (368)
Q Consensus 248 lVlDdvw~~~~~~~~~l~~~l~~~~~----gs~Iiv--TtR~~--~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 319 (368)
+|+||+..-+....+-|...+..... -..|.. |.+.. .+...-.....+.|.||+..+...+.........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~- 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK- 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc-
Confidence 99999976665565555444332211 112332 33322 2222223336899999999999998877652221
Q ss_pred CCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 044878 320 AGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSK 354 (368)
Q Consensus 320 ~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 354 (368)
+...+..+.|+++..|+|+-+.-+-..|...
T Consensus 237 ----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 237 ----LLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred ----cccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 2335567789999999999998888777663
No 82
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=3e-05 Score=77.54 Aligned_cols=190 Identities=14% Similarity=0.155 Sum_probs=108.5
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+.+.. .....+. ..++.-...+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 468999999999999887632 23566789999999999999998774 2211100 0011111111111
Q ss_pred HHh-------ccC-CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeC-ChHHH
Q 044878 221 ESI-------TLS-SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTR-SMVVA 287 (368)
Q Consensus 221 ~~l-------~~~-~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR-~~~va 287 (368)
..- ... .....+...+...+... ++-++|+|++...+....+.|...+..-...+.+|++|. ...+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 100 000 00112233333333221 445889999987777778888887765555666665554 34343
Q ss_pred hhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh-HHHHHH
Q 044878 288 LTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP-LAARAL 347 (368)
Q Consensus 288 ~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~ 347 (368)
..+.. ...+++.+++.++....+...+-...-. --.+....|++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~----i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS----ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 32221 2468899999988877776654222111 11345567888888866 444444
No 83
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.39 E-value=1.2e-06 Score=81.91 Aligned_cols=85 Identities=20% Similarity=0.163 Sum_probs=61.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC--CCHHHHHHHHHHHhccCCCCCCChH------HHH---H
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD--FDVLRISKAILESITLSSCGLTDLN------SVQ---L 238 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~~~------~l~---~ 238 (368)
..++|+|++|+|||||++.+++....++|+..+||.+++. .++.++++.++..+-....+..... .+. +
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 5689999999999999999999853447999999999866 7889999998665544333221111 111 1
Q ss_pred HHHhc-CeeEEEEEcCc
Q 044878 239 KLKEA-KKFLIVLDDVW 254 (368)
Q Consensus 239 ~l~~~-kr~LlVlDdvw 254 (368)
.+... ++.+|++|++.
T Consensus 249 ~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 249 RLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHcCCCeEEEEEChh
Confidence 22222 89999999994
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.39 E-value=9.2e-06 Score=73.27 Aligned_cols=136 Identities=9% Similarity=-0.007 Sum_probs=72.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCe
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKK 245 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr 245 (368)
+...-+.++|++|+||||+|+.+++.. -........++.++. .++. .... ......+...+.....
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~----~~~~-----g~~~~~~~~~~~~a~~ 106 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLV----GEYI-----GHTAQKTREVIKKALG 106 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhh----hhhc-----cchHHHHHHHHHhccC
Confidence 345667899999999999999998763 111111112333322 1111 1110 0111222333333345
Q ss_pred eEEEEEcCccCC--------hhhHHHhhhhcCCCCCCcEEEEEeCChHHHhh--------cCCCCceeCCCCChhHHHHH
Q 044878 246 FLIVLDDVWDKK--------YELWQALKSPFMAGAPGSRIIVTTRSMVVALT--------MGSGKNYELKLLSDDDCWSV 309 (368)
Q Consensus 246 ~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~--------~~~~~~~~l~~L~~~~~~~l 309 (368)
-+|+||++.... .+..+.+...+........+|+++...+.... ......+++++++.++-.++
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 689999996421 12334454444443333355566544332110 01124588999999999999
Q ss_pred HHHhhc
Q 044878 310 FVNHAF 315 (368)
Q Consensus 310 f~~~~~ 315 (368)
+.+.+-
T Consensus 187 l~~~~~ 192 (261)
T TIGR02881 187 AERMVK 192 (261)
T ss_pred HHHHHH
Confidence 987763
No 85
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.38 E-value=4.2e-06 Score=87.09 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=87.3
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccc-----cccCeEE-EEecC-----C
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTE-----AFEPKAW-VCVSD-----D 209 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~F~~~~w-v~vs~-----~ 209 (368)
-..++||+.++.++++.|..... .-+.++|++|+||||||+.+....... -....+| +..+. .
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~ 259 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS 259 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc
Confidence 35789999999999999977432 235699999999999999999874111 1123333 22211 0
Q ss_pred C--CHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCC-------hhhHH-HhhhhcCCCCCCcEEE
Q 044878 210 F--DVLRISKAILESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKK-------YELWQ-ALKSPFMAGAPGSRII 278 (368)
Q Consensus 210 ~--~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~-------~~~~~-~l~~~l~~~~~gs~Ii 278 (368)
+ .... .+..+...+... .+.+|++|++.... ..+-. .+.+.+.. ..-++|
T Consensus 260 ~~ge~e~-----------------~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~I 320 (852)
T TIGR03345 260 VKGEFEN-----------------RLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTI 320 (852)
T ss_pred cchHHHH-----------------HHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEE
Confidence 0 0111 222333333322 68999999986532 11111 23343322 134667
Q ss_pred EEeCChHHHhhc-------CCCCceeCCCCChhHHHHHHHHh
Q 044878 279 VTTRSMVVALTM-------GSGKNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 279 vTtR~~~va~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 313 (368)
-||...+....+ .-...+.+.+++.++..+++...
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 666654432222 12257999999999999997543
No 86
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.5e-05 Score=77.47 Aligned_cols=194 Identities=13% Similarity=0.124 Sum_probs=111.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+.....|..++.... -...+.++|+.|+||||+|+.+.+.. ........ ...+..-..++.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~-----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT-----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC-----CCCCcccHHHHHHh
Confidence 468899999999988887642 22457789999999999999999875 22111100 01111122233332
Q ss_pred HHhccC-----C---CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHH
Q 044878 221 ESITLS-----S---CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVA 287 (368)
Q Consensus 221 ~~l~~~-----~---~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va 287 (368)
...... . .....+.+++..+... .+-++|+|++...+...++.|...+..-...+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 221110 0 0111223333322221 44589999998777777888888776544455555555433 222
Q ss_pred hhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 288 LTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 288 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
..+. -...+++.+++.++....+...+-....... .+....|++.++|.+..+..+..
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2221 1246788899988887777665532111111 34567789999998865544433
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.36 E-value=1.1e-05 Score=73.44 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=76.4
Q ss_pred EEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
-+.++|++|+||||+|+.+.... .........++.++. .+ ++..+.+.. .......+.+...-+|+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a~~gvL~ 126 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRAMGGVLF 126 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHccCcEEE
Confidence 47799999999999998887653 112222223555542 12 222222111 12233334444567999
Q ss_pred EEcCccC---------ChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhcC--------CCCceeCCCCChhHHHHHHHH
Q 044878 250 LDDVWDK---------KYELWQALKSPFMAGAPGSRIIVTTRSMVVALTMG--------SGKNYELKLLSDDDCWSVFVN 312 (368)
Q Consensus 250 lDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~--------~~~~~~l~~L~~~~~~~lf~~ 312 (368)
||++... ..+.++.+...+.....+.+||.++.......... ....+++.+++.++-..++.+
T Consensus 127 iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~ 206 (284)
T TIGR02880 127 IDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGL 206 (284)
T ss_pred EechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHH
Confidence 9999632 12234555555554445567777776543322211 124689999999999999888
Q ss_pred hhc
Q 044878 313 HAF 315 (368)
Q Consensus 313 ~~~ 315 (368)
.+-
T Consensus 207 ~l~ 209 (284)
T TIGR02880 207 MLK 209 (284)
T ss_pred HHH
Confidence 763
No 88
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=3.5e-05 Score=74.64 Aligned_cols=156 Identities=15% Similarity=0.111 Sum_probs=90.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFL 247 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~L 247 (368)
..-+.|+|++|+|||+|++.+.+.....+.. .+.|++ ..+++.++...+... ........+.. ..-+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~------~~~f~~~~~~~~~~~-----~~~~f~~~~~~-~~dv 197 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT------SEKFLNDLVDSMKEG-----KLNEFREKYRK-KVDV 197 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHhcc-----cHHHHHHHHHh-cCCE
Confidence 3458999999999999999999984222333 344554 345566666655422 23334333332 4558
Q ss_pred EEEEcCccCC-hhhH-HHhhhhcCC-CCCCcEEEEEeC-ChHH--------HhhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 248 IVLDDVWDKK-YELW-QALKSPFMA-GAPGSRIIVTTR-SMVV--------ALTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 248 lVlDdvw~~~-~~~~-~~l~~~l~~-~~~gs~IivTtR-~~~v--------a~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
|+|||+.... ...+ +.+...|.. ...|..||+||. .+.- ...+..+.++.+++.+.+.-..++.+.+.
T Consensus 198 LlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred EEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 9999996431 1111 223333321 123557888875 3221 12233445789999999999999988874
Q ss_pred CCCCCCCCccHHHHHHHHHHHcCCC
Q 044878 316 EGRDAGTHGNFESTRQRVVEKRKGL 340 (368)
Q Consensus 316 ~~~~~~~~~~l~~~~~~I~~~c~Gl 340 (368)
... ... -+++...|++.+.|.
T Consensus 278 ~~~-~~l---~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 278 IEH-GEL---PEEVLNFVAENVDDN 298 (440)
T ss_pred hcC-CCC---CHHHHHHHHhccccC
Confidence 321 111 144556666666653
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.33 E-value=1.3e-05 Score=74.42 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=84.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+++|.++..+.+..++..+ .-+.++.++|++|+||||+|+.+++.. .. ....+..+. .... ..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~-~~---~~~~i~~~~-~~~~-~i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV-GA---EVLFVNGSD-CRID-FVRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh-Cc---cceEeccCc-ccHH-HHHHHHH
Confidence 56889999999999988753 335678889999999999999998872 21 122333333 1211 1222111
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC-ChhhHHHhhhhcCCCCCCcEEEEEeCChHH-Hhhc-CCCCceeC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK-KYELWQALKSPFMAGAPGSRIIVTTRSMVV-ALTM-GSGKNYEL 298 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~v-a~~~-~~~~~~~l 298 (368)
.+....+ +. ..+-+||+||+... .......+...+.....++++|+||....- ...+ .-...+.+
T Consensus 90 ~~~~~~~-----------~~-~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 90 RFASTVS-----------LT-GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred HHHHhhc-----------cc-CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 1110000 00 14558999999655 223334455545544567788888865421 1111 11135677
Q ss_pred CCCChhHHHHHHH
Q 044878 299 KLLSDDDCWSVFV 311 (368)
Q Consensus 299 ~~L~~~~~~~lf~ 311 (368)
...+.++..+++.
T Consensus 158 ~~p~~~~~~~il~ 170 (316)
T PHA02544 158 GVPTKEEQIEMMK 170 (316)
T ss_pred CCCCHHHHHHHHH
Confidence 7777777665543
No 90
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.33 E-value=2e-06 Score=81.82 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=71.1
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.++++.++..+.+...|... +.+.+.|++|+|||++|+.+++.. ....|+.+.||++++.++..+++...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 45778888899999988642 357789999999999999999886 45678889999999988866654322
Q ss_pred HHhccCCCCC----CChHHHHHHHHhc--CeeEEEEEcCccCC
Q 044878 221 ESITLSSCGL----TDLNSVQLKLKEA--KKFLIVLDDVWDKK 257 (368)
Q Consensus 221 ~~l~~~~~~~----~~~~~l~~~l~~~--kr~LlVlDdvw~~~ 257 (368)
.....+. ...-.+....... ++++||+|++...+
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1111111 0111222222222 78999999996544
No 91
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=4.6e-05 Score=76.59 Aligned_cols=177 Identities=12% Similarity=0.101 Sum_probs=109.2
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc---------------------ccc
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE---------------------AFE 199 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~---------------------~F~ 199 (368)
.+++|.+..++.|...+..+. -...+.++|+.|+||||+|+.+.+.. ... +|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468899999999999987632 24567899999999999999988763 211 111
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCc
Q 044878 200 PKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGS 275 (368)
Q Consensus 200 ~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 275 (368)
. ..+..+....+ .++..+...+... ++=++|+|++...+...++.|...+..-...+
T Consensus 92 ~-~~ld~~~~~~v------------------d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 I-HELDAASNNSV------------------DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred e-EEecccccCCH------------------HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1 11111111111 1122222222211 45588999998877778888888887655566
Q ss_pred EEEEEe-CChHHHhhcCC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 276 RIIVTT-RSMVVALTMGS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 276 ~IivTt-R~~~va~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
.+|++| ....+-..+.. ..++++.+++.++....+...+-...-. .-.+....|++.++|.+--+..
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~----i~~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT----AEPEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 666555 43443332222 2578999999999988887765332111 1134567788999987654433
No 92
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=3.7e-05 Score=74.59 Aligned_cols=179 Identities=11% Similarity=0.111 Sum_probs=105.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccc-c---C--------------eE
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAF-E---P--------------KA 202 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F-~---~--------------~~ 202 (368)
.+++|.+..+..|.+.+..+. -...+.++|+.|+||||+|+.+.+.. ....- + | .-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468899999999999887532 23567889999999999999998764 21100 0 0 01
Q ss_pred EEEec--CCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHh----cCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcE
Q 044878 203 WVCVS--DDFDVLRISKAILESITLSSCGLTDLNSVQLKLKE----AKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSR 276 (368)
Q Consensus 203 wv~vs--~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 276 (368)
|+.+. ..... .+...+.+.+.. ..+-++|+|++...+....+.|...+......+.
T Consensus 92 ~~~i~g~~~~gi------------------d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 VLEIDGASHRGI------------------EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred eEEeeccccCCH------------------HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 11111 11111 112222222211 1566899999976665566777777765445666
Q ss_pred EEEEeCCh-HHHhhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044878 277 IIVTTRSM-VVALTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARAL 347 (368)
Q Consensus 277 IivTtR~~-~va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 347 (368)
+|++|... .+...+ .-...+++.+++.++....+...+-...-. --.+....|++.++|.+- |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~----i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE----TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 76666432 222111 112478999999999888777665321111 114456778889988664 44433
No 93
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.32 E-value=5.7e-06 Score=85.29 Aligned_cols=155 Identities=15% Similarity=0.180 Sum_probs=87.1
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcc----ccc-cCeEEEEecCCCCHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLT----EAF-EPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~F-~~~~wv~vs~~~~~~~l~ 216 (368)
..++||+++++++++.|..... .-+.++|++|+|||++|+.+.+.... ..+ +..+|.. +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh
Confidence 4689999999999999976432 23568999999999999999987411 111 3444431 111111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC---------hhhHHHhhhhcCCCCCC-cEEEEEeCChHH
Q 044878 217 KAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK---------YELWQALKSPFMAGAPG-SRIIVTTRSMVV 286 (368)
Q Consensus 217 ~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~g-s~IivTtR~~~v 286 (368)
. .......-...+..+...+...++.+|++|++..-. .+.-+.+...+. .| -++|-+|...+.
T Consensus 251 a----~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 251 A----GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEY 323 (731)
T ss_pred h----hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHH
Confidence 0 000000000122233333333367899999996321 111233444443 33 355555554332
Q ss_pred Hhhc-------CCCCceeCCCCChhHHHHHHHHhh
Q 044878 287 ALTM-------GSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 287 a~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
...+ .-...+++.+++.++..+++....
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1111 122578999999999999998654
No 94
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.32 E-value=2e-05 Score=76.82 Aligned_cols=157 Identities=12% Similarity=0.103 Sum_probs=92.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhcccccc--CeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFE--PKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~--~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
..-+.|+|+.|+|||+|++.+.+.. ...+. .+.+++. .++...+...+.. .....+...+. +.-
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~------~~~~~~~~~~~~~-----~~~~~~~~~~~--~~d 213 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTS------EKFTNDFVNALRN-----NTMEEFKEKYR--SVD 213 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEH------HHHHHHHHHHHHc-----CcHHHHHHHHh--cCC
Confidence 3558899999999999999999984 33332 2344432 2344444444432 12333433333 344
Q ss_pred EEEEEcCccCChh--hHHHhhhhcCC-CCCCcEEEEEeCChH---------HHhhcCCCCceeCCCCChhHHHHHHHHhh
Q 044878 247 LIVLDDVWDKKYE--LWQALKSPFMA-GAPGSRIIVTTRSMV---------VALTMGSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 247 LlVlDdvw~~~~~--~~~~l~~~l~~-~~~gs~IivTtR~~~---------va~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
+|+|||+...... ..+.+...|.. ...|..||+||.... +...+..+.++++.+.+.++-..++.+.+
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 8999999653211 12233333321 123556888876531 22233444679999999999999999887
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCChHH
Q 044878 315 FEGRDAGTHGNFESTRQRVVEKRKGLPLA 343 (368)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 343 (368)
-...- . --+++...|++.+.|..-.
T Consensus 294 ~~~~~-~---l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 294 EEEGI-D---LPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHcCC-C---CCHHHHHHHHcCcCCCHHH
Confidence 43211 1 1245566777777776553
No 95
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.31 E-value=3.9e-05 Score=79.14 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=88.6
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
+.+.+|.+..+++|+++|......+.....++.++|++|+||||+|+.+... ....|- -+..+...+...+...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~-l~~~~~---~i~~~~~~d~~~i~g~~- 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA-TGRKYV---RMALGGVRDEAEIRGHR- 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH-hCCCEE---EEEcCCCCCHHHhccch-
Confidence 4568999999999998887421110023457999999999999999999986 333331 12333322322221110
Q ss_pred HHhccCCCCCCChHHHHHHHHhc--CeeEEEEEcCccCChhh----HHHhhhhcCCC---------------CCCcEEEE
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEA--KKFLIVLDDVWDKKYEL----WQALKSPFMAG---------------APGSRIIV 279 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~--kr~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~Iiv 279 (368)
... .......+.+.+... ..-+|+||.+....... .+.+...+... -...-+|.
T Consensus 396 ~~~-----~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 396 RTY-----IGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred hcc-----CCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 000 001112333344433 44578999995433211 23343333210 12334445
Q ss_pred EeCChHHHhhc-CCCCceeCCCCChhHHHHHHHHhh
Q 044878 280 TTRSMVVALTM-GSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 280 TtR~~~va~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
|+.+..+.... +-..++.+.+++.++-.++..++.
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55443322111 112478999999999888877665
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=6.5e-05 Score=74.69 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=111.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..+..|...+..+. -...+.++|+.|+||||+|+.+.+.. ....... ..+....+ .+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHH
Confidence 468899999999999987642 34568899999999999999998874 2211100 00000001 11111
Q ss_pred HH-------hccCC-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHH
Q 044878 221 ES-------ITLSS-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVA 287 (368)
Q Consensus 221 ~~-------l~~~~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 287 (368)
.. +.+.. ....++.++...+... ++-++|+|++...+...++.+...+..-...+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 11 00000 1111222222222221 5558999999887777788888877655556666665543 3332
Q ss_pred hhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 288 LTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 288 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
..+. -...+++.+++.++-...+...+....-. --++....|++.++|.+-.+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~----id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK----YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 12468999999998888887766332211 12455667888999987654443
No 97
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.27 E-value=3.9e-05 Score=75.92 Aligned_cols=133 Identities=13% Similarity=0.148 Sum_probs=80.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccc--cCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAF--EPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFL 247 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~L 247 (368)
..+.|+|..|+|||.|++.+.+.. ...+ ..+++++ ..+++.++...+... ..+.+.+++. +-=+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yit------aeef~~el~~al~~~-----~~~~f~~~y~--~~DL 380 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVS------SEEFTNEFINSIRDG-----KGDSFRRRYR--EMDI 380 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEee------HHHHHHHHHHHHHhc-----cHHHHHHHhh--cCCE
Confidence 348999999999999999999974 2222 2334443 344555555444321 2233333332 2348
Q ss_pred EEEEcCccCCh-hhHH-HhhhhcCC-CCCCcEEEEEeCCh---------HHHhhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 248 IVLDDVWDKKY-ELWQ-ALKSPFMA-GAPGSRIIVTTRSM---------VVALTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 248 lVlDdvw~~~~-~~~~-~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
|+|||+..... ..|. .+...|.. ...|..||+||... .+...+...-+++|.+.+.+.-..++.+++.
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 99999965422 2232 33333321 13456788888753 2333444556899999999999999988874
Q ss_pred C
Q 044878 316 E 316 (368)
Q Consensus 316 ~ 316 (368)
.
T Consensus 461 ~ 461 (617)
T PRK14086 461 Q 461 (617)
T ss_pred h
Confidence 3
No 98
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.26 E-value=0.00014 Score=75.55 Aligned_cols=164 Identities=18% Similarity=0.159 Sum_probs=84.1
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
+.+++|.+..++.+.+++.........+..++.++|++|+|||++|+.+.+. ....| .-+..+...+..++..
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~-l~~~~---~~i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA-LNRKF---VRFSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH-hcCCe---EEEeCCCcccHHHHcC---
Confidence 3468899999999888765321110023357999999999999999999987 33333 1122232222222110
Q ss_pred HHhccCCCCCCChHHHHHHHHhc--CeeEEEEEcCccCChh----hHHHhhhhc--------CCC-------CCCcEEEE
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEA--KKFLIVLDDVWDKKYE----LWQALKSPF--------MAG-------APGSRIIV 279 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~--kr~LlVlDdvw~~~~~----~~~~l~~~l--------~~~-------~~gs~Iiv 279 (368)
. ...........+.+.+... .+-+|+||++...... .-..+...+ .+. ..+.-+|.
T Consensus 392 -~--~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 392 -H--RRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred -C--CCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 0 0000011122233333332 3448899999543211 112222222 111 02234445
Q ss_pred EeCChHH-Hh-hcCCCCceeCCCCChhHHHHHHHHhh
Q 044878 280 TTRSMVV-AL-TMGSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 280 TtR~~~v-a~-~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
||..... .. ...-..++++.+++.++-.+++..+.
T Consensus 469 TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 469 TANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred ecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5544321 11 11222578999999988888776643
No 99
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=8.1e-05 Score=74.20 Aligned_cols=189 Identities=15% Similarity=0.125 Sum_probs=108.9
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+.. ....-+ ..+++.-...+.+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 468999999999999987643 24567789999999999999998764 221100 01111111222222
Q ss_pred HHhccC-------C-CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe-CChHHH
Q 044878 221 ESITLS-------S-CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT-RSMVVA 287 (368)
Q Consensus 221 ~~l~~~-------~-~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt-R~~~va 287 (368)
.....+ . ........+...+... +.-++|+|++...+...+..|...+..-.....+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 111110 0 0111223333333321 55688999998777677888887776544455555544 333332
Q ss_pred hhcC-CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHH
Q 044878 288 LTMG-SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 288 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
..+. -...+++.+++.++....+...+-...-.- -.+....|++.++|.+..+..
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDALS 219 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 2221 124688899999988888777653221111 134566788888887764443
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=3.4e-05 Score=74.66 Aligned_cols=134 Identities=16% Similarity=0.136 Sum_probs=78.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
..-+.|+|+.|+|||+|++.+.+.. ......+++++ ...+...+...+... ........+. ..-+|
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l-~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~~~f~~~~~--~~dvL 206 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL-RESGGKILYVR------SELFTEHLVSAIRSG-----EMQRFRQFYR--NVDAL 206 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEee------HHHHHHHHHHHHhcc-----hHHHHHHHcc--cCCEE
Confidence 3567899999999999999999984 22223334443 234445555554321 1222222221 44589
Q ss_pred EEEcCccCChhh--HHHhhhhcCC-CCCCcEEEEEeCCh---------HHHhhcCCCCceeCCCCChhHHHHHHHHhhcC
Q 044878 249 VLDDVWDKKYEL--WQALKSPFMA-GAPGSRIIVTTRSM---------VVALTMGSGKNYELKLLSDDDCWSVFVNHAFE 316 (368)
Q Consensus 249 VlDdvw~~~~~~--~~~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 316 (368)
++||+....... .+.+...|.. ...|..||+||... .+...+..+..+.+.+++.++-..++.+.+-.
T Consensus 207 iIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred EEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 999996543211 2233333321 12356788888542 22223344568899999999999999887743
No 101
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.23 E-value=7e-06 Score=78.28 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=97.3
Q ss_pred CCceecccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVL 213 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~ 213 (368)
..++.|+++.++++.+.+...-.. +...++-|.++|++|+|||+||+.+++.. ... |+.++. .
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-~~~-----~i~v~~----~ 199 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-NAT-----FIRVVG----S 199 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh-CCC-----EEEeeh----H
Confidence 356889999999998876321100 00335668899999999999999999873 222 333321 1
Q ss_pred HHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC-----------ChhhHHHhhhhcC--C---CCCCcEE
Q 044878 214 RISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK-----------KYELWQALKSPFM--A---GAPGSRI 277 (368)
Q Consensus 214 ~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l~--~---~~~gs~I 277 (368)
++. ....+. .......+........+.+|+|||+... +......+...+. + ...+..|
T Consensus 200 ~l~----~~~~g~--~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 200 ELV----QKFIGE--GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred HHh----Hhhccc--hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 111 111100 0011122222222336789999999542 1111222333221 1 1235578
Q ss_pred EEEeCChHHHhh--cC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 278 IVTTRSMVVALT--MG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 278 ivTtR~~~va~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
|.||...+.... .. -...+++.+.+.++-.++|..+..... .....++ ..+++.+.|.-
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~-~~~~~~~----~~la~~t~g~s 337 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN-LADDVDL----EELAELTEGAS 337 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC-CCCcCCH----HHHHHHcCCCC
Confidence 888876432211 11 234689999999999999988764322 1111233 44666666643
No 102
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.6e-05 Score=73.43 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=92.6
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
+.+-+|.++-+++|++.|.-..-...-+-.++++|||+|+|||+|++.+.+. ....| +-++++.--|..+|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a-l~Rkf---vR~sLGGvrDEAEI----- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA-LGRKF---VRISLGGVRDEAEI----- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH-hCCCE---EEEecCccccHHHh-----
Confidence 4578899999999999986432211134479999999999999999999987 44444 23344443333332
Q ss_pred HHhccCC-C-CCCChHHHHHHHHhc--CeeEEEEEcCccCCh----hhHHHhhhhcC-CCC------------CCcEEE-
Q 044878 221 ESITLSS-C-GLTDLNSVQLKLKEA--KKFLIVLDDVWDKKY----ELWQALKSPFM-AGA------------PGSRII- 278 (368)
Q Consensus 221 ~~l~~~~-~-~~~~~~~l~~~l~~~--kr~LlVlDdvw~~~~----~~~~~l~~~l~-~~~------------~gs~Ii- 278 (368)
.+.. . -..-...+.+.+.+. ++-|++||.+..... +--..+...|- ..+ -=|.|+
T Consensus 393 ---RGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 393 ---RGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred ---ccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 1110 0 011123455555555 888999999954321 01112222221 111 114444
Q ss_pred EEeC-ChH-H-HhhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 279 VTTR-SMV-V-ALTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 279 vTtR-~~~-v-a~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
|||- +-+ + +..+.-..++++.+-+++|-.++-+++..
T Consensus 470 iaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 470 IATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3333 222 2 12223336889999998888877666553
No 103
>PRK08116 hypothetical protein; Validated
Probab=98.19 E-value=8.2e-06 Score=73.67 Aligned_cols=104 Identities=24% Similarity=0.222 Sum_probs=62.6
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
..+.++|..|+|||+||..+++..... ...+++++ ..+++..+....... .......+...+.. -=|||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~--~~~~~~~~~~~l~~--~dlLv 183 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSS--GKEDENEIIRSLVN--ADLLI 183 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhcc--ccccHHHHHHHhcC--CCEEE
Confidence 357899999999999999999985222 33445554 344555555544322 12233444444543 23899
Q ss_pred EEcCccCChhhHHH--hhhhcCC-CCCCcEEEEEeCCh
Q 044878 250 LDDVWDKKYELWQA--LKSPFMA-GAPGSRIIVTTRSM 284 (368)
Q Consensus 250 lDdvw~~~~~~~~~--l~~~l~~-~~~gs~IivTtR~~ 284 (368)
|||+......+|.. +...+.. -..|..+|+||...
T Consensus 184 iDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 184 LDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 99996543445543 4433332 13566799999753
No 104
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=0.0001 Score=68.06 Aligned_cols=193 Identities=14% Similarity=0.078 Sum_probs=112.6
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc-------------cccCeEEEEecC
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE-------------AFEPKAWVCVSD 208 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-------------~F~~~~wv~vs~ 208 (368)
+++|.+..++.+...+..+. -.....++|+.|+||+++|..+.+.. ... .+.-..|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 57899999999999987642 24678899999999999999887764 221 112223432110
Q ss_pred CCCHHHHHHHHHHHhc--cCCCCCC---ChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEE
Q 044878 209 DFDVLRISKAILESIT--LSSCGLT---DLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIV 279 (368)
Q Consensus 209 ~~~~~~l~~~il~~l~--~~~~~~~---~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv 279 (368)
..+-..+...-++..+ ....+.. ....+.+.+... ++-++|+|++...+....+.+...+..-. .+.+|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 0000000001111111 1111112 233344444332 66789999998877778888888876544 445555
Q ss_pred EeCCh-HHHhhcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 280 TTRSM-VVALTMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 280 TtR~~-~va~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
+|.+. .+-..+.+. ..+++.+++.++..+.+.+.... +. .......++..++|.|..+....
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~--~~-----~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE--EI-----LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc--cc-----chhHHHHHHHHcCCCHHHHHHHH
Confidence 55443 333222222 57899999999999988876421 11 01113467889999997665443
No 105
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.16 E-value=1.3e-05 Score=83.65 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=86.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcc----ccc-cCeEEEEecCCCCHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLT----EAF-EPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~F-~~~~wv~vs~~~~~~~l~ 216 (368)
..++||+++++++++.|..... .-+.++|++|+|||++|+.+...... ... +..+|.- +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh
Confidence 4589999999999999986432 23469999999999999999876311 111 2445531 111111
Q ss_pred HHHHHHhccCCCCC---CChHHHHHHHHhcCeeEEEEEcCccCC-------hhhHH-HhhhhcCCCCCCcEEEEEeCChH
Q 044878 217 KAILESITLSSCGL---TDLNSVQLKLKEAKKFLIVLDDVWDKK-------YELWQ-ALKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 217 ~~il~~l~~~~~~~---~~~~~l~~~l~~~kr~LlVlDdvw~~~-------~~~~~-~l~~~l~~~~~gs~IivTtR~~~ 285 (368)
.+..... ..+..+...+...++.+|++|++..-. ..... -+.+.+.. ..-++|.+|...+
T Consensus 248 -------ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDE 318 (821)
T ss_pred -------ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHH
Confidence 0110000 122333444444478899999995210 01122 23333322 1246666666655
Q ss_pred HHhhc-------CCCCceeCCCCChhHHHHHHHH
Q 044878 286 VALTM-------GSGKNYELKLLSDDDCWSVFVN 312 (368)
Q Consensus 286 va~~~-------~~~~~~~l~~L~~~~~~~lf~~ 312 (368)
..... ....++.+.+.+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 1224678888888888887764
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.14 E-value=2.6e-05 Score=79.92 Aligned_cols=157 Identities=13% Similarity=0.162 Sum_probs=88.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccc-----ccCeEEEEecCCCCHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEA-----FEPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----F~~~~wv~vs~~~~~~~l~ 216 (368)
..++||+.++.++++.|..... .-+.++|++|+|||+||+.+....+... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 4599999999999999987432 2245799999999999999987631111 23444421 11111
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC--------ChhhHHHhhhhcCCCCCCcEEEEEeCChHHHh
Q 044878 217 KAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK--------KYELWQALKSPFMAGAPGSRIIVTTRSMVVAL 288 (368)
Q Consensus 217 ~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 288 (368)
+........-...+..+...+.+..+.+|+||++..- ...+...+..++... ..-++|-+|...+...
T Consensus 254 ---laG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 254 ---LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSN 329 (758)
T ss_pred ---hcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHH
Confidence 1000000000112233444444446789999999631 112222233333221 2345666665544322
Q ss_pred hc-------CCCCceeCCCCChhHHHHHHHHhh
Q 044878 289 TM-------GSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 289 ~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
.+ .-...+.+.+.+.++...++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 21 122578999999999999988654
No 107
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.13 E-value=1.3e-05 Score=63.98 Aligned_cols=96 Identities=19% Similarity=0.093 Sum_probs=51.5
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcC-eeEEEE
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAK-KFLIVL 250 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~k-r~LlVl 250 (368)
|.|+|++|+||||+|+.+.+. ...+ .+.+..+.-.+. ........+..+........ +.+|+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~-l~~~---~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~i 64 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY-LGFP---FIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFI 64 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH-TTSE---EEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhh-cccc---cccccccccccc------------cccccccccccccccccccccceeeee
Confidence 578999999999999999998 3222 233332221100 00000112223333333334 899999
Q ss_pred EcCccCChhh-----------HHHhhhhcCCCC---CCcEEEEEeCC
Q 044878 251 DDVWDKKYEL-----------WQALKSPFMAGA---PGSRIIVTTRS 283 (368)
Q Consensus 251 Ddvw~~~~~~-----------~~~l~~~l~~~~---~gs~IivTtR~ 283 (368)
||+....... ...+...+.... .+..||.||..
T Consensus 65 De~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 65 DEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp ETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 9996543322 344444443322 23567777766
No 108
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=0.00014 Score=67.64 Aligned_cols=165 Identities=12% Similarity=0.102 Sum_probs=94.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhcc-------C----CCCCCChHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITL-------S----SCGLTDLNS 235 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~-------~----~~~~~~~~~ 235 (368)
-..-+.++|+.|+||||+|+.+.... .....+. ..++.-.-.+.+...-.. . .-..++..+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 34567899999999999999998875 3221100 000000011111100000 0 001122233
Q ss_pred HHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HHhhcCCC-CceeCCCCChhHHHHH
Q 044878 236 VQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VALTMGSG-KNYELKLLSDDDCWSV 309 (368)
Q Consensus 236 l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~~~~~-~~~~l~~L~~~~~~~l 309 (368)
+...+... ++-++|+|++...+....+.+...+..-..++.+|+||.+.+ +...+.+. ..+.+.+++.++..+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 33333222 444667899998888888888888876556777887777653 22222221 4689999999999888
Q ss_pred HHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 310 FVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 310 f~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
+.... ... . .+.+..++..++|.|+.+..+
T Consensus 174 L~~~~-~~~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 174 LQQAL-PES---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhc-ccC---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 87653 111 1 223456788999999865544
No 109
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.10 E-value=0.00016 Score=63.17 Aligned_cols=122 Identities=21% Similarity=0.243 Sum_probs=75.0
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
-..++|.+.+++.|++-...=-.. ....-+.+||..|+|||+|++.+.+....+. .--|.|++
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k------------ 88 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSK------------ 88 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECH------------
Confidence 456899998888887643220000 2334567899999999999999988741111 11223332
Q ss_pred HHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccC-ChhhHHHhhhhcCCC---CC-CcEEEEEeCChHH
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDK-KYELWQALKSPFMAG---AP-GSRIIVTTRSMVV 286 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~-~~~~~~~l~~~l~~~---~~-gs~IivTtR~~~v 286 (368)
.+..++..+...+... .||+|.+||+.-+ ....+..+++.|..+ .+ ...|..||..++.
T Consensus 89 -------~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 89 -------EDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -------HHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 2345666677777755 8999999998532 335677787777532 12 3345555555444
No 110
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.10 E-value=6.8e-05 Score=68.86 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=102.9
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
++++.+|+.++..+..++...+. .-+..|.|.|..|.|||.+.+.+++.. . -..+|+++-+.++...++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-n---~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-N---LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-C---CcceeeehHHhccHHHHHHHHH
Confidence 56789999999999999987653 245667899999999999999999873 1 1358999999999999999999
Q ss_pred HHhccCCCCC-------CChHHHHHHHHhc-------CeeEEEEEcCccC---ChhhHHHh---hhhcCCCCCCcEEEEE
Q 044878 221 ESITLSSCGL-------TDLNSVQLKLKEA-------KKFLIVLDDVWDK---KYELWQAL---KSPFMAGAPGSRIIVT 280 (368)
Q Consensus 221 ~~l~~~~~~~-------~~~~~l~~~l~~~-------kr~LlVlDdvw~~---~~~~~~~l---~~~l~~~~~gs~IivT 280 (368)
.+....+.+. .........+.+. +.++||||++..- +..-...+ ...++ .+ .-+|++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~iil 154 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVIIL 154 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEEEE
Confidence 9985322211 2233334444442 5789999999542 11111111 12222 22 233444
Q ss_pred eCChHHH-hh--cCCCC--ceeCCCCChhHHHHHHHHh
Q 044878 281 TRSMVVA-LT--MGSGK--NYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 281 tR~~~va-~~--~~~~~--~~~l~~L~~~~~~~lf~~~ 313 (368)
+....-. .. ++... ++....-+.++-..+|.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3332221 11 23333 4566667777777766543
No 111
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.10 E-value=5.6e-06 Score=76.81 Aligned_cols=181 Identities=18% Similarity=0.251 Sum_probs=114.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeE-EEEecCCCCHHHHHHHHHHHhccCCCCC-CChHHHHHHHHhcC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKA-WVCVSDDFDVLRISKAILESITLSSCGL-TDLNSVQLKLKEAK 244 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~-wv~vs~~~~~~~l~~~il~~l~~~~~~~-~~~~~l~~~l~~~k 244 (368)
...+.+.++|.|||||||++-.+.. +...|..-. ++....-.+...+.-.+...++....+. .....+...+.. +
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~--~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~-r 88 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH--AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGD-R 88 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh--HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhh-h
Confidence 3568899999999999999998887 455666444 4444443344444444444455544332 233455555555 9
Q ss_pred eeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhcCCCCceeCCCCChh-HHHHHHHHhhcCCCCC-CC
Q 044878 245 KFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVALTMGSGKNYELKLLSDD-DCWSVFVNHAFEGRDA-GT 322 (368)
Q Consensus 245 r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~~~-~~ 322 (368)
|.++|+||...-- ..-..+...+-.+...-.|+.|+|..... .....+.+.+|+.. ++-++|...+....-. .-
T Consensus 89 r~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 89 RALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 9999999983321 11122333344444555788888864432 33456778888764 7888888776332211 11
Q ss_pred CccHHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 044878 323 HGNFESTRQRVVEKRKGLPLAARALGGLLRSK 354 (368)
Q Consensus 323 ~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 354 (368)
...-.....+|.++..|.||+|...++..++-
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl 196 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSL 196 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 12335567789999999999999999887764
No 112
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.10 E-value=0.00016 Score=74.65 Aligned_cols=166 Identities=11% Similarity=0.161 Sum_probs=99.1
Q ss_pred CCceecccccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.++.++.+...+..... .......++.++|+.|+|||+||+.+.... +...+.+..+...+...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----cCCeEEEeCchhhhccc---
Confidence 56789999999999888764211 000234578899999999999999998863 22334555444222111
Q ss_pred HHHHHhccCCC--CCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC----C-------CCcEEEEEeCCh
Q 044878 218 AILESITLSSC--GLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG----A-------PGSRIIVTTRSM 284 (368)
Q Consensus 218 ~il~~l~~~~~--~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~----~-------~gs~IivTtR~~ 284 (368)
+..-++.... +......+.+.++....-+|+||++...+++.++.+...+..+ . ..+-||+||..-
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g 604 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAG 604 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcc
Confidence 1111221111 1223345566666645569999999888878888887766433 1 234477777431
Q ss_pred --HHH--------------------hhcC------CCCceeCCCCChhHHHHHHHHhh
Q 044878 285 --VVA--------------------LTMG------SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 285 --~va--------------------~~~~------~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
.+. ..+. -..++.+.||+.++-..++....
T Consensus 605 ~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 605 ASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred hhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 111 0111 12467788888888877765543
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.09 E-value=6.4e-05 Score=78.83 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=85.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccc-c----ccCeEEEEecCCCCHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTE-A----FEPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~----F~~~~wv~vs~~~~~~~l~ 216 (368)
..++||+.++.+++..|..... .-+.++|++|+|||++|+.+....... . ....+|.. +...+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 4699999999999999977432 234589999999999999998873111 1 12333321 111110
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCC--------hhhHHHhhhhcCCCCCC-cEEEEEeCChHH
Q 044878 217 KAILESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKK--------YELWQALKSPFMAGAPG-SRIIVTTRSMVV 286 (368)
Q Consensus 217 ~~il~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~g-s~IivTtR~~~v 286 (368)
........-...+..+...+.+. ++.+|++|++..-. .+.-+.++..+ ..| -++|-+|...+.
T Consensus 242 ----a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 242 ----AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEY 314 (852)
T ss_pred ----hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHH
Confidence 00000000001223333344333 68999999996421 01112233322 233 356656655544
Q ss_pred Hhhc-------CCCCceeCCCCChhHHHHHHHHhh
Q 044878 287 ALTM-------GSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 287 a~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
...+ .-...+.+...+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 2221 122467888889999998887653
No 114
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=0.00013 Score=68.69 Aligned_cols=206 Identities=17% Similarity=0.093 Sum_probs=118.9
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccc--cCeEEEEecCCCCHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAF--EPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~ 218 (368)
+..+.||+.++..+.+++...-+. ...+-+.|.|.+|.|||.+...++.+. .... -+++++....-.....++..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~-~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSL-SKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhh-hhhcccceeEEEeeccccchHHHHHH
Confidence 678999999999999998764332 456779999999999999999999884 2111 13355544443456788888
Q ss_pred HHHHhcc-CCCCCCC---hHHHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhcCCC-CCCcEEEEEeCChH--H----
Q 044878 219 ILESITL-SSCGLTD---LNSVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPFMAG-APGSRIIVTTRSMV--V---- 286 (368)
Q Consensus 219 il~~l~~-~~~~~~~---~~~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~--v---- 286 (368)
|...+.. ...+... ...+..+..+. +.||+|+|.+.......-..+...|.+- -++|++|+.---.. .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8887722 1111222 22333333333 5789999998432211222333333322 35666655422111 1
Q ss_pred -Hhh----cCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhc
Q 044878 287 -ALT----MGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLR 352 (368)
Q Consensus 287 -a~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~ 352 (368)
... -.....+...|-+.++-.++|..+....... ..+....+-+++||.|.-=-+..+-...+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~---~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTS---IFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccccc---ccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111 1123567889999999999999987432221 22233344445555554444444333333
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.08 E-value=0.00054 Score=71.80 Aligned_cols=137 Identities=14% Similarity=0.205 Sum_probs=80.3
Q ss_pred CCceecccccHHHHHHHHhcCC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.+..++.+...+.... ........++.++|+.|+|||+||+.+.+... ..-...+.+..+.-...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~-~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF-DSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh-cCCCcEEEEEhHHhhhh-----
Confidence 4568999999999888876421 00002335788999999999999999987631 11122334443332111
Q ss_pred HHHHHhccCCCC---CCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC----C-------CCcEEEEEeCC
Q 044878 218 AILESITLSSCG---LTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG----A-------PGSRIIVTTRS 283 (368)
Q Consensus 218 ~il~~l~~~~~~---~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~----~-------~gs~IivTtR~ 283 (368)
.....+.+..++ ......+...++....-+|+||++...++..+..+...+..+ + ..+-||+||..
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 112222222221 112233444554434469999999877778888887766433 1 12337888875
No 116
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.04 E-value=0.00011 Score=64.96 Aligned_cols=177 Identities=15% Similarity=0.167 Sum_probs=105.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+|+|.+.-++++.=++.....++ ..+--+.++|++|.||||||..+.+.. ..++ -++-+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~----k~tsGp------------- 86 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANEL-GVNL----KITSGP------------- 86 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCe----Eecccc-------------
Confidence 468999988888877776543333 667789999999999999999999984 2211 111111
Q ss_pred HhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhcCCC--------CCCcE-----------EEEEe
Q 044878 222 SITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPFMAG--------APGSR-----------IIVTT 281 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~gs~-----------IivTt 281 (368)
.......+...|... +.=+|.+|.+...++..-+.+.+++.+. ++++| |=.||
T Consensus 87 -------~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 87 -------ALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -------cccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 111122222222222 4456677888766554444444444211 23333 33578
Q ss_pred CChHHHhhcCC--CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 282 RSMVVALTMGS--GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 282 R~~~va~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
|.--+...... +-+.+++.-+.+|-.+...+.+-.-. . .--++.+.+|++...|-|--+.-+-
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i---~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-I---EIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-C---CCChHHHHHHHHhccCCcHHHHHHH
Confidence 86444332221 24678888888888888888762211 1 1125567889999999997544433
No 117
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.00038 Score=70.57 Aligned_cols=124 Identities=15% Similarity=0.230 Sum_probs=80.3
Q ss_pred CCceecccccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.++.+..+.+.+..... .......+...+||.|||||.||+.+.... -+.=+..+-+..|.....
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L-fg~e~aliR~DMSEy~Ek----- 563 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL-FGDEQALIRIDMSEYMEK----- 563 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh-cCCCccceeechHHHHHH-----
Confidence 34689999999999988765321 111456778889999999999999998763 110123333333432221
Q ss_pred HHHHHhccCCCC---CCChHHHHHHHHhcCee-EEEEEcCccCChhhHHHhhhhcCCC
Q 044878 218 AILESITLSSCG---LTDLNSVQLKLKEAKKF-LIVLDDVWDKKYELWQALKSPFMAG 271 (368)
Q Consensus 218 ~il~~l~~~~~~---~~~~~~l~~~l~~~kr~-LlVlDdvw~~~~~~~~~l~~~l~~~ 271 (368)
.-++.+-+..++ -..-..+.+.+++ ++| +|.||++..-+++..+.+...|-++
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr-~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRR-KPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhc-CCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 223344444432 2445667777777 666 8899999887888888888777544
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.04 E-value=0.00049 Score=72.04 Aligned_cols=137 Identities=13% Similarity=0.176 Sum_probs=82.3
Q ss_pred CCceecccccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.++.++.+...+..... ........+.++|+.|+|||+||+.+.+.... .-...+-+..+...+...+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~-~~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG-SEDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-CccceEEEEchhccccccHH-
Confidence 45689999999999888753211 11023456778999999999999999876311 11223333344322211111
Q ss_pred HHHHHhccCCC---CCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC-----------CCCcEEEEEeCC
Q 044878 218 AILESITLSSC---GLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG-----------APGSRIIVTTRS 283 (368)
Q Consensus 218 ~il~~l~~~~~---~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~ 283 (368)
.+.+..+ +......+...+.....-+|+||++...+++.++.+...|..+ ...+-||+||..
T Consensus 586 ----~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 ----KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred ----HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1111111 1223345666676644568999999888888888888777543 134557777664
No 119
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=0.0001 Score=77.18 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=83.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccc-----ccCeEEE-EecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEA-----FEPKAWV-CVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----F~~~~wv-~vs~~~~~~~l 215 (368)
..++||+.++.++++.|..... .-+.++|++|+|||+||+.+....+... ....+|. ..+. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 4699999999999999987432 2356899999999999999988742111 1223322 2221 1
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCCh--------hhHHHhhhhcCCCCCCcEEEEEeCChHH
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKKY--------ELWQALKSPFMAGAPGSRIIVTTRSMVV 286 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~--------~~~~~l~~~l~~~~~gs~IivTtR~~~v 286 (368)
. ........-...+..+...+... .+.+|++|++..-.. +.-+.+.+.+.. ..-++|-+|...+.
T Consensus 246 ~----ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~ 319 (857)
T PRK10865 246 V----AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEY 319 (857)
T ss_pred h----hccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHH
Confidence 0 00000000001122333333322 688999999964310 111223333322 23466666666554
Q ss_pred HhhcC-------CCCceeCCCCChhHHHHHHHHhh
Q 044878 287 ALTMG-------SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 287 a~~~~-------~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
...+. -...+.+...+.++...++....
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 22211 11345566668888888775543
No 120
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.01 E-value=0.00022 Score=67.31 Aligned_cols=159 Identities=16% Similarity=0.150 Sum_probs=91.3
Q ss_pred CCceecccccHHH-HHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 141 EPAVYGRDEDKDR-MLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~-l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
++.++|-...... +...+..... .....+.|+|+.|.|||.|++++.+. ...+......++++ .......+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g---~~~nplfi~G~~GlGKTHLl~Aign~-~~~~~~~a~v~y~~----se~f~~~~ 158 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPG---GAYNPLFIYGGVGLGKTHLLQAIGNE-ALANGPNARVVYLT----SEDFTNDF 158 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccC---CcCCcEEEECCCCCCHHHHHHHHHHH-HHhhCCCceEEecc----HHHHHHHH
Confidence 5566665544333 2333332221 24567999999999999999999998 44444433333333 23344444
Q ss_pred HHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh-hhH-HHhhhhcCC-CCCCcEEEEEeCCh---------HHH
Q 044878 220 LESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY-ELW-QALKSPFMA-GAPGSRIIVTTRSM---------VVA 287 (368)
Q Consensus 220 l~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~-~~~-~~l~~~l~~-~~~gs~IivTtR~~---------~va 287 (368)
+..+.. ...+...+.. .-=++++||++.-.. +.| +.+...|.. ...|-.||+|++.. .+.
T Consensus 159 v~a~~~-----~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~ 230 (408)
T COG0593 159 VKALRD-----NEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLR 230 (408)
T ss_pred HHHHHh-----hhHHHHHHhh---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHH
Confidence 444432 1122222222 222889999975321 122 234333331 12344899998643 344
Q ss_pred hhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 288 LTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 288 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
..+..+-++++.|.+.+....++.+.+.
T Consensus 231 SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 231 SRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred HHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 4555667899999999999999988663
No 121
>PF14516 AAA_35: AAA-like domain
Probab=97.97 E-value=0.00053 Score=64.03 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=115.1
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-----CCHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-----FDVLRI 215 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-----~~~~~l 215 (368)
.+..+.|...-+++.+.|... -..+.|.|+-.+|||||...+.+...+..+. ++++.+..- .+....
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHHHH
Confidence 556778886777777777642 3578999999999999999998874233333 346665431 244544
Q ss_pred HHHH----HHHhccCCC----------CCCChHHHH-HHHHh-c-CeeEEEEEcCccCCh--hhHHHhhhhcC----CCC
Q 044878 216 SKAI----LESITLSSC----------GLTDLNSVQ-LKLKE-A-KKFLIVLDDVWDKKY--ELWQALKSPFM----AGA 272 (368)
Q Consensus 216 ~~~i----l~~l~~~~~----------~~~~~~~l~-~~l~~-~-kr~LlVlDdvw~~~~--~~~~~l~~~l~----~~~ 272 (368)
++.+ ..++..... ...+..... +.+.. . ++.+|+||++...-. ...+++...+. ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 4444 444443321 111222222 22222 2 899999999954211 11122222221 111
Q ss_pred ----CCcEEEEEeCChHH--Hhh-----cCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 273 ----PGSRIIVTTRSMVV--ALT-----MGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 273 ----~gs~IivTtR~~~v--a~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
..+-.++...+.+. ... .+....++|.+++.+|...|+..+-.. .. ....++|...++|+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCCCH
Confidence 11222222222111 111 123357899999999999998776321 11 122788999999999
Q ss_pred HHHHHHHHHhcCC
Q 044878 342 LAARALGGLLRSK 354 (368)
Q Consensus 342 Lai~~~~~~L~~~ 354 (368)
.-+..++..+..+
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999775
No 122
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.97 E-value=3.4e-05 Score=61.68 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=44.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCC---ChHHHHHHHHhcCee
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLT---DLNSVQLKLKEAKKF 246 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~---~~~~l~~~l~~~kr~ 246 (368)
..+.|+|++|+||||+++.+.... .......+.+..+........... ............ ....+.......+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL-GPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc-CCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 468899999999999999999874 222233455544433221111111 011111111111 122222222222348
Q ss_pred EEEEEcCccCC
Q 044878 247 LIVLDDVWDKK 257 (368)
Q Consensus 247 LlVlDdvw~~~ 257 (368)
+|++|++....
T Consensus 81 viiiDei~~~~ 91 (148)
T smart00382 81 VLILDEITSLL 91 (148)
T ss_pred EEEEECCcccC
Confidence 99999997653
No 123
>PRK08181 transposase; Validated
Probab=97.95 E-value=3.4e-05 Score=69.41 Aligned_cols=100 Identities=18% Similarity=0.083 Sum_probs=57.6
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEE
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVL 250 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVl 250 (368)
-+.++|++|+|||.||..+.+..... ...+.|++ ..+++..+..... ..........+. +-=||||
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~~l~--~~dLLII 173 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTR------TTDLVQKLQVARR-----ELQLESAIAKLD--KFDLLIL 173 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeee------HHHHHHHHHHHHh-----CCcHHHHHHHHh--cCCEEEE
Confidence 48899999999999999999874222 23345554 3445555533221 123333333333 4459999
Q ss_pred EcCccCChhhHH--HhhhhcCCCCCCcEEEEEeCCh
Q 044878 251 DDVWDKKYELWQ--ALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 251 Ddvw~~~~~~~~--~l~~~l~~~~~gs~IivTtR~~ 284 (368)
||+.......|. .+...+...-.+..+|+||...
T Consensus 174 DDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 174 DDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred eccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999654333332 3444443211123688888764
No 124
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0011 Score=57.94 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=107.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC-CCCHHHHHHHHHHHhccCCCCCCCh----HH----HH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD-DFDVLRISKAILESITLSSCGLTDL----NS----VQ 237 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~----~~----l~ 237 (368)
.+-+++.++|.-|+|||++.+....... =+.++-|.++. ..+...+...++..+..+. .... .+ +.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHH
Confidence 3456899999999999999995544311 12222244444 3577788888888887622 2222 22 22
Q ss_pred HHHHhcCe-eEEEEEcCccCChhhHHHhhhhcCCCCCCc---EEEEEeCCh--------HHHhhcCCCCc-eeCCCCChh
Q 044878 238 LKLKEAKK-FLIVLDDVWDKKYELWQALKSPFMAGAPGS---RIIVTTRSM--------VVALTMGSGKN-YELKLLSDD 304 (368)
Q Consensus 238 ~~l~~~kr-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~IivTtR~~--------~va~~~~~~~~-~~l~~L~~~ 304 (368)
....+.+| ..+++|+......+..+.++....-...+| +|+..-..+ .....-.-... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 22333377 999999998887778887776554322233 244432211 11111001123 899999999
Q ss_pred HHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 305 DCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 305 ~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
+...++..+.-+...+.. ---.+....|..+..|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 888888777644322211 11245567789999999999987764
No 125
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=8.7e-05 Score=68.53 Aligned_cols=173 Identities=8% Similarity=0.054 Sum_probs=100.4
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhc-----
Q 044878 151 KDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESIT----- 224 (368)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~----- 224 (368)
.+.+...+..+. -..-+.+.|+.|+||+++|+.+.... ....... ..++.-...+.+...-.
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~ 78 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHI 78 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEE
Confidence 345555555432 23567789999999999999998765 3221110 00110011111111100
Q ss_pred --c---CCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcCCC-
Q 044878 225 --L---SSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMGSG- 293 (368)
Q Consensus 225 --~---~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~~~- 293 (368)
. ..-..+....+.+.+... ++=++|+|++...+....+.+...+..-..++.+|++|.+. .+...+.+.
T Consensus 79 i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 79 LEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred EccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0 001122333333444332 55688899998888888889988887766677777777664 333232222
Q ss_pred CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHH
Q 044878 294 KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAA 344 (368)
Q Consensus 294 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 344 (368)
..+.+.+++.++..+.+.... .. . ...+...+..++|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~-~~----~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQS-SA----E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHh-cc----C----hHHHHHHHHHcCCCHHHH
Confidence 478999999999988887653 11 1 112345678899999744
No 126
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00036 Score=65.12 Aligned_cols=158 Identities=12% Similarity=0.032 Sum_probs=89.4
Q ss_pred eec-ccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 144 VYG-RDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 144 ~~G-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
++| .+.-++.+...+..+ .-.....++|+.|+||||+|+.+.+.. ........ .++.-...+.+..
T Consensus 7 i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~ 74 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDS 74 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhc
Confidence 445 555666777777543 234567899999999999999998764 22211100 0000011111110
Q ss_pred Hhcc---------CCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HH
Q 044878 222 SITL---------SSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VA 287 (368)
Q Consensus 222 ~l~~---------~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va 287 (368)
.-.. .....+++..+...+... .+=++|+|++...+...-+.+...+..-..++.+|++|.+.. +.
T Consensus 75 ~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 75 GNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 0000 000111222233333211 455799999987777777888888876666777777776533 22
Q ss_pred hhcCC-CCceeCCCCChhHHHHHHHHh
Q 044878 288 LTMGS-GKNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 288 ~~~~~-~~~~~l~~L~~~~~~~lf~~~ 313 (368)
..+.+ ...+++.+++.++....+...
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 22222 247899999999987777653
No 127
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.91 E-value=0.00023 Score=68.02 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=72.0
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEE
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVL 250 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVl 250 (368)
++.|.|+-++|||||++.+.... ... .+++..-+......-+.+.+... ..+...++.+|+|
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~-~~~---~iy~~~~d~~~~~~~l~d~~~~~--------------~~~~~~~~~yifL 100 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL-LEE---IIYINFDDLRLDRIELLDLLRAY--------------IELKEREKSYIFL 100 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC-Ccc---eEEEEecchhcchhhHHHHHHHH--------------HHhhccCCceEEE
Confidence 99999999999999996666652 222 44444332211111011111111 1111116689999
Q ss_pred EcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHh-----hc-CCCCceeCCCCChhHHHH
Q 044878 251 DDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVAL-----TM-GSGKNYELKLLSDDDCWS 308 (368)
Q Consensus 251 Ddvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~-----~~-~~~~~~~l~~L~~~~~~~ 308 (368)
|.|... ..|......+.+..+. +|++|+-+..... .. +-...+++.||+..|...
T Consensus 101 DEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 101 DEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 999765 5788877777776655 8888887754432 22 223578999999998865
No 128
>PRK08118 topology modulation protein; Reviewed
Probab=97.90 E-value=6.6e-06 Score=68.88 Aligned_cols=33 Identities=24% Similarity=0.509 Sum_probs=27.7
Q ss_pred EEEEEecCCcchHHHHHHHHhhh-c-cccccCeEE
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK-L-TEAFEPKAW 203 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~-~-~~~F~~~~w 203 (368)
-|.|+|++|+||||||+.+++.. . .-+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999986 3 366777775
No 129
>PRK06526 transposase; Provisional
Probab=97.90 E-value=2.9e-05 Score=69.43 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=54.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-CeeEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA-KKFLI 248 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-kr~Ll 248 (368)
.-+.++|++|+|||+||..+........+. +.|+ +..+++..+..... ...... .+... +.-||
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~-v~f~------t~~~l~~~l~~~~~-----~~~~~~---~l~~l~~~dlL 163 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR-VLFA------TAAQWVARLAAAHH-----AGRLQA---ELVKLGRYPLL 163 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc-hhhh------hHHHHHHHHHHHHh-----cCcHHH---HHHHhccCCEE
Confidence 458899999999999999998874333232 2332 33344444433221 112222 23333 44589
Q ss_pred EEEcCccCChhhHH--HhhhhcCC-CCCCcEEEEEeCCh
Q 044878 249 VLDDVWDKKYELWQ--ALKSPFMA-GAPGSRIIVTTRSM 284 (368)
Q Consensus 249 VlDdvw~~~~~~~~--~l~~~l~~-~~~gs~IivTtR~~ 284 (368)
||||+.......+. .+...+.. ...++ +|+||...
T Consensus 164 IIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 164 IVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 99999654322222 23333321 12344 88888764
No 130
>PRK12377 putative replication protein; Provisional
Probab=97.87 E-value=2.4e-05 Score=69.59 Aligned_cols=101 Identities=18% Similarity=0.051 Sum_probs=58.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
..+.++|++|+|||+||..+.+.. ......+.+++++ +++..+-..... ......+...+. +-=|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~l~~l~--~~dLLi 168 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKFLQELC--KVDLLV 168 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHHHHHhc--CCCEEE
Confidence 468899999999999999999985 3333345666543 444444433321 112222322221 566999
Q ss_pred EEcCccCChhhHH--HhhhhcCCC-CCCcEEEEEeCC
Q 044878 250 LDDVWDKKYELWQ--ALKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 250 lDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTtR~ 283 (368)
|||+.......|. .+...+... .+.-.+|+||..
T Consensus 169 IDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999554334454 344444321 223357888764
No 131
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.87 E-value=0.00042 Score=57.67 Aligned_cols=121 Identities=16% Similarity=0.155 Sum_probs=73.3
Q ss_pred cccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc------------------ccCeEEEEe
Q 044878 146 GRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA------------------FEPKAWVCV 206 (368)
Q Consensus 146 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~------------------F~~~~wv~v 206 (368)
|.++..+.|.+.+..+. -+..+.++|+.|+||+|+|..+.+.. -... ..-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 44556666777776532 23467899999999999999998764 2221 222333332
Q ss_pred cCC---CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 207 SDD---FDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 207 s~~---~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
... ..++++ +++...+....... +.=++|+|++...+.+....|...+..-..++.+|++|.+
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~~~~-------------~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSPSEG-------------KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-TTS-------------SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred ccccchhhHHHH-HHHHHHHHHHHhcC-------------CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 221 222222 23333332221110 5668999999998888999999988877778898888887
Q ss_pred hH
Q 044878 284 MV 285 (368)
Q Consensus 284 ~~ 285 (368)
.+
T Consensus 142 ~~ 143 (162)
T PF13177_consen 142 PS 143 (162)
T ss_dssp GG
T ss_pred hH
Confidence 54
No 132
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.87 E-value=0.00011 Score=65.07 Aligned_cols=103 Identities=16% Similarity=0.132 Sum_probs=60.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
...+.++|.+|+|||+||..+.+.... .-..+++++ ..+++..+-..... .......+...+. +.=||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~~l~~l~--~~dlL 166 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL-RGKSVLIIT------VADIMSAMKDTFSN---SETSEEQLLNDLS--NVDLL 166 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEE------HHHHHHHHHHHHhh---ccccHHHHHHHhc--cCCEE
Confidence 346889999999999999999998522 223445553 34455444443321 1123334444443 34489
Q ss_pred EEEcCccCChhhHHH--hhhhcCCC-CCCcEEEEEeCC
Q 044878 249 VLDDVWDKKYELWQA--LKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 249 VlDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTtR~ 283 (368)
||||+.......|.. +...+... ...-.+|+||..
T Consensus 167 vIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 167 VIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 999997665566663 33333211 223467778764
No 133
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00088 Score=66.37 Aligned_cols=104 Identities=20% Similarity=0.268 Sum_probs=67.8
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
+.+-+|.++-+++|++++.-..-++.-+-++++.+||+|+|||++|+.+.....+..| -++|+.-.|..+|--.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf----RfSvGG~tDvAeIkGH-- 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF----RFSVGGMTDVAEIKGH-- 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE----EEeccccccHHhhccc--
Confidence 5678999999999999986533222245689999999999999999999987433333 3455555554433100
Q ss_pred HHhccCCCCCCChHHHHHHHHhc--CeeEEEEEcCc
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEA--KKFLIVLDDVW 254 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~--kr~LlVlDdvw 254 (368)
...--..-...+++.|++. .+-|+.||.|.
T Consensus 484 ----RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvD 515 (906)
T KOG2004|consen 484 ----RRTYVGAMPGKIIQCLKKVKTENPLILIDEVD 515 (906)
T ss_pred ----ceeeeccCChHHHHHHHhhCCCCceEEeehhh
Confidence 0000011224556666665 77799999984
No 134
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.86 E-value=0.00012 Score=76.52 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=82.5
Q ss_pred CCceecccccHHHHHHHHhcCC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.++.++.+.+.+.... ........++.++|+.|+|||.||+.+.... -......+-+.++...+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l-~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL-YGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH-hCCCcceEEEeHHHhhhhh----
Confidence 5679999999999999885421 1111345688999999999999999988763 1111222222222211111
Q ss_pred HHHHHhccCCCC---CCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCC
Q 044878 218 AILESITLSSCG---LTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRS 283 (368)
Q Consensus 218 ~il~~l~~~~~~---~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 283 (368)
-...+.+..++ ...-..+...+++...-+|+||++...++..++.+...+..+. ..+-||+||..
T Consensus 640 -~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 640 -TVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred -hhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 11122222221 1222345666666567799999998777777877777665432 34667777663
No 135
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.85 E-value=9.7e-05 Score=71.01 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=84.7
Q ss_pred CceecccccHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDP-------SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.++.|.+..+++|.+.+...-. -+....+-+.++|++|+|||+||+.+++. ....| +.+... .
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e-l~~~f-----i~V~~s----e 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE-TSATF-----LRVVGS----E 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh-hCCCE-----EEEecc----h
Confidence 3578899888888877632100 00023456789999999999999999997 33333 222110 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC--------C---hhhHHHhhhh---cC--CCCCCcEEE
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK--------K---YELWQALKSP---FM--AGAPGSRII 278 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~--------~---~~~~~~l~~~---l~--~~~~gs~Ii 278 (368)
+. ...... .......+........+.+|+||++... + ......+... +. ....+..||
T Consensus 253 L~----~k~~Ge--~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI 326 (438)
T PTZ00361 253 LI----QKYLGD--GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVI 326 (438)
T ss_pred hh----hhhcch--HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEE
Confidence 11 111000 0001122222222236788899987421 0 0001112221 21 112356788
Q ss_pred EEeCChHHHhh--cC---CCCceeCCCCChhHHHHHHHHhh
Q 044878 279 VTTRSMVVALT--MG---SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 279 vTtR~~~va~~--~~---~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
+||...+.... .. ....+++.+.+.++..++|..+.
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 88876544322 11 12468899999999999998765
No 136
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.85 E-value=0.00013 Score=76.62 Aligned_cols=137 Identities=14% Similarity=0.202 Sum_probs=83.9
Q ss_pred CCceecccccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.+..++.+...+..... .......++.++|+.|+|||+||+.+.... ...-...+.+..+.......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l-~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL-FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-cCCCCcEEEEechhhcccch---
Confidence 45689999999999998875321 000234678899999999999999999863 11112333444443222111
Q ss_pred HHHHHhccCCCC---CCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCC
Q 044878 218 AILESITLSSCG---LTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRS 283 (368)
Q Consensus 218 ~il~~l~~~~~~---~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 283 (368)
...+.+..++ ......+...+......+|+||++...++..++.|...|..+. ..+-||+||..
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 1122222121 1223455566666455599999998888888888887774331 23448888775
No 137
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.82 E-value=0.00012 Score=67.42 Aligned_cols=122 Identities=15% Similarity=0.172 Sum_probs=71.1
Q ss_pred cccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhcc
Q 044878 146 GRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITL 225 (368)
Q Consensus 146 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 225 (368)
++........+++..-... ...+-+.++|+.|+|||.||..+.+......+ .+.+++++ +++.++-.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEEEHH------HHHHHHHHHHhc
Confidence 3444444445555432211 23456889999999999999999998533333 34555543 455555554432
Q ss_pred CCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHH--hhhhc-CCC-CCCcEEEEEeCC
Q 044878 226 SSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQA--LKSPF-MAG-APGSRIIVTTRS 283 (368)
Q Consensus 226 ~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~IivTtR~ 283 (368)
. +.......+. +-=||||||+..+....|.. +...+ ... ..+-.+|+||..
T Consensus 206 ~-----~~~~~l~~l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 G-----SVKEKIDAVK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred C-----cHHHHHHHhc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 2233333322 55699999998766677753 43333 322 245578888864
No 138
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.82 E-value=0.00018 Score=72.11 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=40.7
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|-+..++++..+|....... ...+++.|+|++|+||||+++.+...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999987643211 33467999999999999999999976
No 139
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.82 E-value=2.9e-05 Score=65.65 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=54.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
.-+.++|+.|+|||.||..+.+..+...+ .+.|+. ..+++..+- ... ...........+. +-=|||
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~------~~~L~~~l~----~~~-~~~~~~~~~~~l~--~~dlLi 113 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFIT------ASDLLDELK----QSR-SDGSYEELLKRLK--RVDLLI 113 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEE------HHHHHHHHH----CCH-CCTTHCHHHHHHH--TSSCEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEee------cCceecccc----ccc-cccchhhhcCccc--cccEec
Confidence 45899999999999999999987533333 345554 334444432 221 1223344444444 456888
Q ss_pred EEcCccCChhhHHH--hhhhcCCC-CCCcEEEEEeCC
Q 044878 250 LDDVWDKKYELWQA--LKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 250 lDdvw~~~~~~~~~--l~~~l~~~-~~gs~IivTtR~ 283 (368)
|||+-......|.. +...+... .++ .+|+||..
T Consensus 114 lDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 114 LDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp EETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred ccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 99997665445532 22222211 223 58888875
No 140
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0016 Score=60.05 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=98.6
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccC-----eEEEEecCCCCHHHHHHHHHHHh
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEP-----KAWVCVSDDFDVLRISKAILESI 223 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~-----~~wv~vs~~~~~~~l~~~il~~l 223 (368)
..+.+...+..+ .-...+.++|+.|+||+++|..+.+.. ......+ +-|+..+..+|...+- .
T Consensus 12 ~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------~ 80 (319)
T PRK08769 12 AYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------F 80 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------c
Confidence 345555555543 234468899999999999999988765 3221110 0011111111100000 0
Q ss_pred ccCCC-----CCCChHH---HHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhc
Q 044878 224 TLSSC-----GLTDLNS---VQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTM 290 (368)
Q Consensus 224 ~~~~~-----~~~~~~~---l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~ 290 (368)
..+.. .....++ +.+.+... ++-++|+|++...+...-+.+...+..-..++.+|++|... .+...+
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 00000 0011222 22222222 55689999998877777777877776655677777777653 333222
Q ss_pred CCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 291 GSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 291 ~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.+. ..+.+.+++.++....+... +. . +..+..++..++|.|+.+..+
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~~--~~----~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLAQ--GV----S----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHHc--CC----C----hHHHHHHHHHcCCCHHHHHHH
Confidence 222 46889999999988777643 10 1 122456789999999866544
No 141
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.80 E-value=0.00013 Score=69.58 Aligned_cols=180 Identities=16% Similarity=0.142 Sum_probs=94.6
Q ss_pred CceecccccHHHHHHHHhcC----C---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKN----D---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.++.|.+..+++|.+.+... + .-+...++-+.++|++|+|||+||+.+.+. ...+| +.+.. ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~-l~~~f-----i~i~~----s~ 214 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH-TTATF-----IRVVG----SE 214 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh-cCCCE-----EEEeh----HH
Confidence 46889888888887765321 0 001134567889999999999999999987 33222 22211 11
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC----------hhh----HHHhhhhcCC--CCCCcEEE
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK----------YEL----WQALKSPFMA--GAPGSRII 278 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~----------~~~----~~~l~~~l~~--~~~gs~Ii 278 (368)
+ ....... ....+..+........+.+|+||++...- ... +..+...+.. ...+..||
T Consensus 215 l----~~k~~ge--~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI 288 (398)
T PTZ00454 215 F----VQKYLGE--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVI 288 (398)
T ss_pred H----HHHhcch--hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 1 1111100 01112233333333478899999975310 011 1122222221 12456788
Q ss_pred EEeCChHHHh--hcC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044878 279 VTTRSMVVAL--TMG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 279 vTtR~~~va~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
+||...+... ... -...+++.+.+.++...+|....-. .......++. .+++.+.|+.-
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd~~----~la~~t~g~sg 352 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVDLE----DFVSRPEKISA 352 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccCHH----HHHHHcCCCCH
Confidence 8887654321 122 2246788888888888888765422 2222212333 45566666543
No 142
>PRK06921 hypothetical protein; Provisional
Probab=97.80 E-value=9.2e-05 Score=66.77 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=55.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-CeeE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA-KKFL 247 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-kr~L 247 (368)
...+.++|..|+|||+||..+.+.....+-..+++++.. +++..+...+ ......+... +-=|
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~~~~dl 180 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRMKKVEV 180 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHhcCCCE
Confidence 456889999999999999999998433213345566532 3333332221 1111122222 4569
Q ss_pred EEEEcCcc-----CChhhHH--HhhhhcCCC-CCCcEEEEEeCC
Q 044878 248 IVLDDVWD-----KKYELWQ--ALKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 248 lVlDdvw~-----~~~~~~~--~l~~~l~~~-~~gs~IivTtR~ 283 (368)
|||||+.. +....|. .+...+... ..+..+|+||..
T Consensus 181 LiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 181 LFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred EEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 99999932 2223454 244444321 234568888864
No 143
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.80 E-value=0.00018 Score=70.37 Aligned_cols=162 Identities=12% Similarity=0.074 Sum_probs=87.5
Q ss_pred CceecccccHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCcchHHHHHHHHhhhcccc-----ccCeEEEEecCC
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDP-------SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEA-----FEPKAWVCVSDD 209 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----F~~~~wv~vs~~ 209 (368)
.++.|.+..++++.+.+...-. -....++-+.++|++|+|||++|+.+++.. ... +....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL-~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL-AQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh-ccccccccCCceeEEeccch
Confidence 4577899999888887532100 000234568899999999999999999984 221 223344444321
Q ss_pred CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHh----cCeeEEEEEcCccCC-------hhh-----HHHhhhhcCCC--
Q 044878 210 FDVLRISKAILESITLSSCGLTDLNSVQLKLKE----AKKFLIVLDDVWDKK-------YEL-----WQALKSPFMAG-- 271 (368)
Q Consensus 210 ~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~----~kr~LlVlDdvw~~~-------~~~-----~~~l~~~l~~~-- 271 (368)
++ +...... ....+..+...... .++++|+||++...- ..+ ...+...+...
T Consensus 261 ----eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ----EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ----hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 11 1110000 00011122222222 268899999996320 011 12333333211
Q ss_pred CCCcEEEEEeCChHHHh--hcC---CCCceeCCCCChhHHHHHHHHhh
Q 044878 272 APGSRIIVTTRSMVVAL--TMG---SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 272 ~~gs~IivTtR~~~va~--~~~---~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
..+..||.||...+... ... -...+++.+.+.++..++|.++.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445666665543311 111 22468999999999999998875
No 144
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.0018 Score=59.75 Aligned_cols=173 Identities=10% Similarity=0.009 Sum_probs=100.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhcc----
Q 044878 151 KDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITL---- 225 (368)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~---- 225 (368)
.+++...+..+ .-...+.+.|+.|+||+++|+.+.... ..+.-+. .++.-...+.+...-..
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~ 78 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE--------ACGFCHSCELMQSGNHPDLHV 78 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCHHHHHHHcCCCCCEEE
Confidence 44555555443 234578899999999999999998765 2221000 00000011111111000
Q ss_pred ---CC-CCCCChHHH---HHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcCCC
Q 044878 226 ---SS-CGLTDLNSV---QLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMGSG 293 (368)
Q Consensus 226 ---~~-~~~~~~~~l---~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~~~ 293 (368)
.. ......+++ ...+... ++=++|+|++...+....+.+...+..-..++.+|++|.+. .+-..+.+.
T Consensus 79 i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 79 IKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred EecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 00 011122222 2222221 45589999998888888899988887666677777766654 343333332
Q ss_pred -CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 294 -KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 294 -~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
..+.+.+++.++..+.+.... . + ....++..++|.|+.+..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~-------~-~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQG-------I-T----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcC-------C-c----hHHHHHHHcCCCHHHHHHHh
Confidence 478999999999988775531 0 1 12457889999999776553
No 145
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.79 E-value=8.9e-05 Score=63.67 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=64.9
Q ss_pred ecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEec----CCC--CHHH---
Q 044878 145 YGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVS----DDF--DVLR--- 214 (368)
Q Consensus 145 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs----~~~--~~~~--- 214 (368)
..+..+....++.|.. ..++.+.|++|+|||.||-...-+. ....|+..+++.-. +.. -+-+
T Consensus 3 ~p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHH
Confidence 3456667777787763 3488899999999999999988776 56778877776421 110 0001
Q ss_pred ----HHHHHHHHhccCCCCCCChHHHHHH----------HHhc--CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEE
Q 044878 215 ----ISKAILESITLSSCGLTDLNSVQLK----------LKEA--KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRII 278 (368)
Q Consensus 215 ----l~~~il~~l~~~~~~~~~~~~l~~~----------l~~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Ii 278 (368)
.+.-+...+..-. +....+.+... ++.. ...+||+|++.+.++.++..+..- .+.|||+|
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 0111111111100 12223333221 1111 678999999999877777766544 46799999
Q ss_pred EEeCChH
Q 044878 279 VTTRSMV 285 (368)
Q Consensus 279 vTtR~~~ 285 (368)
++--..+
T Consensus 151 ~~GD~~Q 157 (205)
T PF02562_consen 151 ITGDPSQ 157 (205)
T ss_dssp EEE----
T ss_pred EecCcee
Confidence 9975543
No 146
>PRK09183 transposase/IS protein; Provisional
Probab=97.76 E-value=0.00012 Score=65.90 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=52.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
..+.|+|++|+|||+||..+........+ .+.+++ ..+++..+...... ............ +.-++|
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~~~~~~~~~~~-~~dlLi 169 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI-KVRFTT------AADLLLQLSTAQRQ-----GRYKTTLQRGVM-APRLLI 169 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEe------HHHHHHHHHHHHHC-----CcHHHHHHHHhc-CCCEEE
Confidence 45779999999999999999776322222 223332 23343333222111 112222222111 556999
Q ss_pred EEcCccCChhhHH--HhhhhcCCC-CCCcEEEEEeCC
Q 044878 250 LDDVWDKKYELWQ--ALKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 250 lDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTtR~ 283 (368)
+||+.......+. .+...+... ..++ +|+||..
T Consensus 170 iDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 170 IDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred EcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 9999754333333 344433211 2354 7888875
No 147
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.75 E-value=0.0013 Score=59.32 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=73.8
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH------------HHHhccCCC---CCCChHH
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI------------LESITLSSC---GLTDLNS 235 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i------------l~~l~~~~~---~~~~~~~ 235 (368)
-+.+.|++|+|||+||+.+.+. ... ....++.+...+..+++... ......... .......
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~-lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 98 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK-RDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNR 98 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH-hCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCch
Confidence 3568999999999999999875 221 23455555555544443221 110000000 0001112
Q ss_pred HHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC----------------CCCcEEEEEeCChHHHh-------hcCC
Q 044878 236 VQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG----------------APGSRIIVTTRSMVVAL-------TMGS 292 (368)
Q Consensus 236 l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~~gs~IivTtR~~~va~-------~~~~ 292 (368)
+..... +...|++|++...+.+.+..|...+..+ .++.+||+|+....-+. ...-
T Consensus 99 l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R 176 (262)
T TIGR02640 99 LTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDR 176 (262)
T ss_pred HHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhh
Confidence 222222 5679999999877666666666655321 13568888887542110 0001
Q ss_pred CCceeCCCCChhHHHHHHHHh
Q 044878 293 GKNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 293 ~~~~~l~~L~~~~~~~lf~~~ 313 (368)
...+.+...+.++-.+++..+
T Consensus 177 ~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 177 LITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred cEEEECCCCCHHHHHHHHHHh
Confidence 124566666766666777665
No 148
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0022 Score=59.83 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=101.4
Q ss_pred ccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccccc---C-----eEEEEecCCCCHHHHHHHH
Q 044878 149 EDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFE---P-----KAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~---~-----~~wv~vs~~~~~~~l~~~i 219 (368)
...+++...+..+ .-..-+.+.|+.|+||+|+|..+.... ....-+ | +-++..+..+|...+.-
T Consensus 9 ~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-- 81 (334)
T PRK07993 9 PDYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP-- 81 (334)
T ss_pred HHHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec--
Confidence 3445666666553 234567899999999999999988764 221110 0 00111111111110000
Q ss_pred HHHhccCCCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcCCC-
Q 044878 220 LESITLSSCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMGSG- 293 (368)
Q Consensus 220 l~~l~~~~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~~~- 293 (368)
.-+...-..+....+.+.+... ++=++|+|++...+...-+.+...+..-..++-+|++|.+. .+...+.+.
T Consensus 82 --~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 82 --EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred --ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 0000000112233333333332 66689999998888788888888887666677777777654 333332221
Q ss_pred CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044878 294 KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAAR 345 (368)
Q Consensus 294 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 345 (368)
..+.+.+++.++....+.... + . . .+.+..++..++|.|..+.
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~-----~--~-~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV-T-----M--S-QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc-C-----C--C-HHHHHHHHHHcCCCHHHHH
Confidence 367899999999887775432 1 1 1 2225567899999997443
No 149
>PRK07261 topology modulation protein; Provisional
Probab=97.73 E-value=0.00018 Score=60.54 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=25.6
Q ss_pred EEEEEecCCcchHHHHHHHHhhh--ccccccCeEEE
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK--LTEAFEPKAWV 204 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~--~~~~F~~~~wv 204 (368)
-|.|+|++|+||||||+.+.... ..-+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 37899999999999999998764 22345555663
No 150
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.71 E-value=0.00019 Score=60.04 Aligned_cols=131 Identities=17% Similarity=0.199 Sum_probs=69.5
Q ss_pred eecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-CCHHHHHHHHHHH
Q 044878 144 VYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILES 222 (368)
Q Consensus 144 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~ 222 (368)
++|....+.++.+.+..-.. .. .-|.|+|..|+||+.+|+.+++.. ... ...||.+.-. .+.+.+-.+++-.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s-~r~--~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNS-PRK--NGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCS-TTT--TS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhh-hcc--cCCeEEEehhhhhcchhhhhhhcc
Confidence 46777788888877765332 22 346699999999999999999863 111 2234444332 2222222222221
Q ss_pred hccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC------C-----CCcEEEEEeCC
Q 044878 223 ITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG------A-----PGSRIIVTTRS 283 (368)
Q Consensus 223 l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~IivTtR~ 283 (368)
......+..... ...+.....=-|+||++.......-..|...+..+ . ...|||.||..
T Consensus 74 ~~~~~~~~~~~~--~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 74 EKGAFTGARSDK--KGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp CSSSSTTTSSEB--EHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccccccc--CCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 111111111100 12344446678999999887766656666555321 1 14688888875
No 151
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.69 E-value=0.00075 Score=66.68 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=78.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
++-+.++|++|+|||+||+.+.+.. .-. ++.++. .++. ...... ....+..+........+.+|
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~-~~~-----~~~i~~----~~~~----~~~~g~--~~~~l~~~f~~a~~~~p~Il 151 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEA-GVP-----FFSISG----SDFV----EMFVGV--GASRVRDLFEQAKKNAPCII 151 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc-CCC-----eeeccH----HHHH----HHHhcc--cHHHHHHHHHHHHhcCCCEE
Confidence 3458899999999999999999873 222 223221 1111 111000 11122333333333367899
Q ss_pred EEEcCccCC----------hhhHHH----hhhhcC--CCCCCcEEEEEeCChHHHh--hc---CCCCceeCCCCChhHHH
Q 044878 249 VLDDVWDKK----------YELWQA----LKSPFM--AGAPGSRIIVTTRSMVVAL--TM---GSGKNYELKLLSDDDCW 307 (368)
Q Consensus 249 VlDdvw~~~----------~~~~~~----l~~~l~--~~~~gs~IivTtR~~~va~--~~---~~~~~~~l~~L~~~~~~ 307 (368)
+||++.... ...+.. +...+. ....+-.||.||...+... .. .-...+.+...+.++-.
T Consensus 152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~ 231 (495)
T TIGR01241 152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGRE 231 (495)
T ss_pred EEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHH
Confidence 999994321 111222 222221 1123445666776543211 11 12356888888888888
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 308 SVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 308 ~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
++|..+.-... .....+ ...+++.+.|..
T Consensus 232 ~il~~~l~~~~-~~~~~~----l~~la~~t~G~s 260 (495)
T TIGR01241 232 EILKVHAKNKK-LAPDVD----LKAVARRTPGFS 260 (495)
T ss_pred HHHHHHHhcCC-CCcchh----HHHHHHhCCCCC
Confidence 88877653221 111112 236777777743
No 152
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.69 E-value=5.5e-05 Score=66.47 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=30.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEe
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCV 206 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~v 206 (368)
+--++|+|+.|+|||||+..+... ....|+++++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~-~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY-LRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh-hcccCCEEEEEec
Confidence 345789999999999999999987 6778877776654
No 153
>PRK10536 hypothetical protein; Provisional
Probab=97.67 E-value=0.00038 Score=61.64 Aligned_cols=131 Identities=13% Similarity=0.185 Sum_probs=72.9
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEE----ecCC--C---CH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVC----VSDD--F---DV 212 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~----vs~~--~---~~ 212 (368)
.+.++......++.+|.. ..++.+.|++|+|||+||..+..+. ....|+..+-.. .++. | +.
T Consensus 56 ~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 456788888888888854 2489999999999999999988865 344444333221 1110 0 11
Q ss_pred H----HHHHHHHHHhccCCCCCCChHHHH------------HHHHhc--CeeEEEEEcCccCChhhHHHhhhhcCCCCCC
Q 044878 213 L----RISKAILESITLSSCGLTDLNSVQ------------LKLKEA--KKFLIVLDDVWDKKYELWQALKSPFMAGAPG 274 (368)
Q Consensus 213 ~----~l~~~il~~l~~~~~~~~~~~~l~------------~~l~~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 274 (368)
. -.+.-+...+..-- +......+. ..++.. ..-+||+|+..+.+......+.. ..+.+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCC
Confidence 1 11122222221100 001111111 011111 55699999998877655555544 44579
Q ss_pred cEEEEEeCChH
Q 044878 275 SRIIVTTRSMV 285 (368)
Q Consensus 275 s~IivTtR~~~ 285 (368)
|++|+|--..+
T Consensus 204 sk~v~~GD~~Q 214 (262)
T PRK10536 204 VTVIVNGDITQ 214 (262)
T ss_pred CEEEEeCChhh
Confidence 99999875433
No 154
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.67 E-value=0.00067 Score=67.36 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=91.3
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh---cccccc-CeEEEEecCC---CCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK---LTEAFE-PKAWVCVSDD---FDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~F~-~~~wv~vs~~---~~~~~ 214 (368)
.+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++.. ....|. ..-|+.+... ++...
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 36899999999998877542 23456789999999999999998752 112233 2344544321 22222
Q ss_pred HHHHHHHHhccCC------CCCCCh-HHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC----------------
Q 044878 215 ISKAILESITLSS------CGLTDL-NSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG---------------- 271 (368)
Q Consensus 215 l~~~il~~l~~~~------~~~~~~-~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~---------------- 271 (368)
+...++....... ...... ......+.+...=+|+||++...+....+.|...+...
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~ 218 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNI 218 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCccc
Confidence 2222221110000 000000 00001122225568999999888777777666544211
Q ss_pred ------------CCCcEEEEEe-CChH-HHhhcC-CCCceeCCCCChhHHHHHHHHhh
Q 044878 272 ------------APGSRIIVTT-RSMV-VALTMG-SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 272 ------------~~gs~IivTt-R~~~-va~~~~-~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
....++|.+| ++.. +..... -...+.+.+|+.++-.+++.+.+
T Consensus 219 ~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 219 PSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred ccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHH
Confidence 1123666554 4322 111111 11467899999999999888876
No 155
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.0028 Score=59.07 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCC
Q 044878 244 KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAG 321 (368)
Q Consensus 244 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 321 (368)
++-++|+|++...+....+.+...+..-.+++.+|++|.+. .+...+.+. ..+.+.+++.++..+.+.... .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~---- 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V---- 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C----
Confidence 55588999999888889999998887666677766666653 333232222 478899999999988886641 1
Q ss_pred CCccHHHHHHHHHHHcCCChHHHHH
Q 044878 322 THGNFESTRQRVVEKRKGLPLAARA 346 (368)
Q Consensus 322 ~~~~l~~~~~~I~~~c~GlPLai~~ 346 (368)
+. ...++..++|.|+.+..
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALA 224 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHH
Confidence 11 12356778999975543
No 156
>CHL00176 ftsH cell division protein; Validated
Probab=97.66 E-value=0.0009 Score=67.57 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=92.7
Q ss_pred CceecccccHHHHHHH---HhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDM---VLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.++.|.++..+++.+. |..... -....++-+.++|++|+|||+||+.+.+.. .. -++.++.. ++
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~~-----p~i~is~s----~f 252 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-EV-----PFFSISGS----EF 252 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-CC-----CeeeccHH----HH
Confidence 4577877666555544 333211 000234568899999999999999998863 21 23333221 11
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC----------hhhH----HHhhhhcC--CCCCCcEEEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK----------YELW----QALKSPFM--AGAPGSRIIV 279 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~----------~~~~----~~l~~~l~--~~~~gs~Iiv 279 (368)
.. .... .....+..+........+++|+|||+.... ...+ ..+...+. ....+-.||.
T Consensus 253 ~~----~~~g--~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 253 VE----MFVG--VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HH----Hhhh--hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 11 0000 011123333444444478999999995321 1122 22222221 1234556777
Q ss_pred EeCChHHHhh--cC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC
Q 044878 280 TTRSMVVALT--MG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG 339 (368)
Q Consensus 280 TtR~~~va~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G 339 (368)
||...+.... .. -...+.+.+.+.++-.++|+.++-.. .. ........+++.+.|
T Consensus 327 aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 327 ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-KL----SPDVSLELIARRTPG 386 (638)
T ss_pred ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-cc----chhHHHHHHHhcCCC
Confidence 7766543221 11 22567888888888888888776331 11 112234567777777
No 157
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.66 E-value=0.00026 Score=66.07 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=64.0
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccC-eEEEEecCCC-CHHHHHHHHHHHhccCC
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEP-KAWVCVSDDF-DVLRISKAILESITLSS 227 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~-~~wv~vs~~~-~~~~l~~~il~~l~~~~ 227 (368)
-..++++.+..-. .-.-+.|+|++|+|||||++.+.+....++-+. ++|+.+.+.. .+.++.+.+...+....
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 4455777776532 113458999999999999999998742333344 4677777654 67788888887776543
Q ss_pred CCCCChH---------HHHHHHHhc-CeeEEEEEcC
Q 044878 228 CGLTDLN---------SVQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 228 ~~~~~~~---------~l~~~l~~~-kr~LlVlDdv 253 (368)
.+..... ...+.+... ++.+||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2221111 122223333 9999999998
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00051 Score=70.59 Aligned_cols=120 Identities=10% Similarity=0.145 Sum_probs=74.0
Q ss_pred CCceecccccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.++.++.|.+.+..... ........+.++|++|+|||+||+.+.... . ...+.+..+.......
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-~---~~~i~id~se~~~~~~--- 529 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-G---IELLRFDMSEYMERHT--- 529 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-C---CCcEEeechhhccccc---
Confidence 45789999999999988764210 000334678899999999999999998762 2 1233444443222111
Q ss_pred HHHHHhccCCCC---CCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcC
Q 044878 218 AILESITLSSCG---LTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFM 269 (368)
Q Consensus 218 ~il~~l~~~~~~---~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 269 (368)
...+.+..++ ......+...+.+....+|+||++...+++.++.+...|.
T Consensus 530 --~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 --VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred --HHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1222222211 1222344555555466799999998877777887777664
No 159
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00083 Score=65.41 Aligned_cols=161 Identities=15% Similarity=0.179 Sum_probs=99.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+.-...|...+..+.- ..-....|+-|+||||+|+.+.+.. .... ....+++.-...+.|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 3579999999999999877532 2345568999999999999998875 2211 1112222222223332
Q ss_pred HH--------hccCCCCCCChHHHHHHHHhc---Cee-EEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC-hHHH
Q 044878 221 ES--------ITLSSCGLTDLNSVQLKLKEA---KKF-LIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS-MVVA 287 (368)
Q Consensus 221 ~~--------l~~~~~~~~~~~~l~~~l~~~---kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-~~va 287 (368)
.. -.....+.++..++.+...-. .|| ++++|.|.-.+...|+.+...+..-...-..|+.|.+ ..+.
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 22 111122345555555555443 344 7799999877778899988888655555555555554 3333
Q ss_pred hhcCC-CCceeCCCCChhHHHHHHHHhh
Q 044878 288 LTMGS-GKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 288 ~~~~~-~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
..+-+ -..|.+..|+.++-...+...+
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHH
Confidence 22222 2578899999887777776655
No 160
>PRK04132 replication factor C small subunit; Provisional
Probab=97.53 E-value=0.0044 Score=64.13 Aligned_cols=157 Identities=14% Similarity=0.038 Sum_probs=97.8
Q ss_pred cCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCcc
Q 044878 177 MGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWD 255 (368)
Q Consensus 177 ~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~ 255 (368)
|.++||||+|..+.++...+.++ ..+-+..|+..+... .++++..+....+- ...+.-++|||++..
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~~-----------~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKEFARTKPI-----------GGASFKIIFLDEADA 641 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCCc-----------CCCCCEEEEEECccc
Confidence 78899999999999984222332 345566666544443 34444443211110 001457999999998
Q ss_pred CChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHH
Q 044878 256 KKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRV 333 (368)
Q Consensus 256 ~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I 333 (368)
.+....+.|...+..-...+++|+++.+. .+.....+. ..+.+.+++.++-...+...+-... ... -++....|
T Consensus 642 Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i---~~e~L~~I 717 (846)
T PRK04132 642 LTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LEL---TEEGLQAI 717 (846)
T ss_pred CCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCC---CHHHHHHH
Confidence 88778888888776544566777666553 332222222 4789999999988887776553221 111 14566789
Q ss_pred HHHcCCChHHHHHHHH
Q 044878 334 VEKRKGLPLAARALGG 349 (368)
Q Consensus 334 ~~~c~GlPLai~~~~~ 349 (368)
++.|+|.+-.+..+-.
T Consensus 718 a~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 718 LYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHcCCCHHHHHHHHH
Confidence 9999998855544433
No 161
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.53 E-value=8.3e-05 Score=68.99 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=42.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+++|.++.++++++++...........+++.++|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999876443211456899999999999999999998874
No 162
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.0012 Score=61.26 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=76.2
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc-------------------cccCeE
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE-------------------AFEPKA 202 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-------------------~F~~~~ 202 (368)
.++|-+....++..+..... ....-+.+.|+.|+||||+|..+.+.. -.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677777888888877432 223358899999999999999998874 111 112233
Q ss_pred EEEecCCCC---HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEE
Q 044878 203 WVCVSDDFD---VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIV 279 (368)
Q Consensus 203 wv~vs~~~~---~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv 279 (368)
.+.-+.... ..+..+++.+....... ..+.-++++|++...+.+.-+.+...+..-...+.+|+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il 144 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFIL 144 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEE
Confidence 333333322 22233333333322111 11667899999987766666777777766667778888
Q ss_pred EeCC
Q 044878 280 TTRS 283 (368)
Q Consensus 280 TtR~ 283 (368)
+|..
T Consensus 145 ~~n~ 148 (325)
T COG0470 145 ITND 148 (325)
T ss_pred EcCC
Confidence 8873
No 163
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.49 E-value=0.019 Score=54.45 Aligned_cols=114 Identities=12% Similarity=0.113 Sum_probs=71.6
Q ss_pred CeeEEEEEcCccCCh---hhHHHh---hhhcCCCCCCcEEEEEeCChHHHhhc------CCCCceeCCCCChhHHHHHHH
Q 044878 244 KKFLIVLDDVWDKKY---ELWQAL---KSPFMAGAPGSRIIVTTRSMVVALTM------GSGKNYELKLLSDDDCWSVFV 311 (368)
Q Consensus 244 kr~LlVlDdvw~~~~---~~~~~l---~~~l~~~~~gs~IivTtR~~~va~~~------~~~~~~~l~~L~~~~~~~lf~ 311 (368)
.+-+||+|+.-.... .-|+.| ...+..+ +=-+||++|-+....... ...+.+.|...+.+.|..+..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~-nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQN-NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhc-CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 477999999854321 112222 1222222 334788888776554432 233678999999999999988
Q ss_pred HhhcCCCCC------------CCC----ccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChH
Q 044878 312 NHAFEGRDA------------GTH----GNFESTRQRVVEKRKGLPLAARALGGLLRSKQRID 358 (368)
Q Consensus 312 ~~~~~~~~~------------~~~----~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~ 358 (368)
++.-..... ... .....-....+..+||--+-+..+++.++...+++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 876432111 000 12233345678899999999999999999876653
No 164
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.47 E-value=0.00014 Score=58.79 Aligned_cols=87 Identities=22% Similarity=0.209 Sum_probs=49.1
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCC-ChHHHHHHHHhcCeeEEEE
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLT-DLNSVQLKLKEAKKFLIVL 250 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~-~~~~l~~~l~~~kr~LlVl 250 (368)
|.++|++|+|||+||+.+.... .. ...-+.++...+..+++.. ......... ....+...+. +..++||
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-~~---~~~~i~~~~~~~~~dl~g~----~~~~~~~~~~~~~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-GR---PVIRINCSSDTTEEDLIGS----YDPSNGQFEFKDGPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-TC---EEEEEE-TTTSTHHHHHCE----EET-TTTTCEEE-CCCTTHH--EEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-hc---ceEEEEeccccccccceee----eeeccccccccccccccccc--ceeEEEE
Confidence 6789999999999999999872 11 2234567776676655432 211110000 0000000000 7899999
Q ss_pred EcCccCChhhHHHhhhhc
Q 044878 251 DDVWDKKYELWQALKSPF 268 (368)
Q Consensus 251 Ddvw~~~~~~~~~l~~~l 268 (368)
|++...+...+..+...+
T Consensus 72 DEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLL 89 (139)
T ss_dssp SSCGG--HHHHHTTHHHH
T ss_pred CCcccCCHHHHHHHHHHH
Confidence 999766666666666655
No 165
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.47 E-value=0.00024 Score=65.90 Aligned_cols=102 Identities=18% Similarity=0.158 Sum_probs=57.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
.-+.++|+.|+|||+||..+.+......+ .+++++++ +++..+...-. . ...+.......+. .-=|||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t~~------~l~~~l~~~~~-~--~~~~~~~~~~~l~--~~DLLI 251 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRTAD------ELIEILREIRF-N--NDKELEEVYDLLI--NCDLLI 251 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEEHH------HHHHHHHHHHh-c--cchhHHHHHHHhc--cCCEEE
Confidence 55899999999999999999998533322 44555433 33333332111 1 1111121122222 335899
Q ss_pred EEcCccCChhhH--HHhhhhcCCC-CCCcEEEEEeCC
Q 044878 250 LDDVWDKKYELW--QALKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 250 lDdvw~~~~~~~--~~l~~~l~~~-~~gs~IivTtR~ 283 (368)
|||+.......| ..+...+... ..+..+||||..
T Consensus 252 IDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 252 IDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 999965543444 3444444322 235578888875
No 166
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.45 E-value=0.00011 Score=57.68 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 167
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.44 E-value=0.00017 Score=58.38 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=62.4
Q ss_pred ecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-c-cccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 145 YGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-L-TEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 145 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~-~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
||.-..++++.+.+..-. ....-|.|.|..|+||+++|+.++... . ...|... .... .
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~------------ 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-L------------ 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-T------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-C------------
Confidence 455556666666554422 223457899999999999999998863 1 1222111 0000 0
Q ss_pred hccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC-CCCcEEEEEeCC
Q 044878 223 ITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 223 l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTtR~ 283 (368)
. .+.+...+.-.|+|+|+...+.+....+...+... ....|+|.||..
T Consensus 61 ---------~----~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 61 ---------P----AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------C----HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------c----HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0 11122225667889999887766777777766533 467799999875
No 168
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.43 E-value=0.0035 Score=54.16 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=36.3
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.++||-++-++++.-+-.. .+.+-+.|.||+|+||||-+..+.+..
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3588988888887776655 456668899999999999887777663
No 169
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.42 E-value=0.0069 Score=56.34 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=34.5
Q ss_pred cccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 148 DEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+...+.|.+.|...+. ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456677787876543 467899999999999999999998874
No 170
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.41 E-value=0.0023 Score=55.44 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=68.8
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
.++|.+...+.|++--..=-.. ....-|.+||--|+|||+|++++.+.. ....-. -|.|++
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e~-~~~glr--LVEV~k-------------- 121 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLNEY-ADEGLR--LVEVDK-------------- 121 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHHHH-HhcCCe--EEEEcH--------------
Confidence 5789888888887643220000 223447799999999999999999873 222211 333333
Q ss_pred hccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccC-ChhhHHHhhhhcCCC
Q 044878 223 ITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDK-KYELWQALKSPFMAG 271 (368)
Q Consensus 223 l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~-~~~~~~~l~~~l~~~ 271 (368)
.+..++..+...|+.. .||+|..||+.-+ ....+..+++.+..+
T Consensus 122 -----~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ 167 (287)
T COG2607 122 -----EDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG 167 (287)
T ss_pred -----HHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC
Confidence 1234456666777766 9999999999533 345788888888633
No 171
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0015 Score=61.37 Aligned_cols=101 Identities=14% Similarity=0.144 Sum_probs=52.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC--HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD--VLRISKAILESITLSSCGLTDLNSVQLKLKEAK 244 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~k 244 (368)
.+.++|+++|++|+||||++.++........ ..+..++. +.+. ..+-++...+.++.+.....+...+...+...+
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~G-kkVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 3458999999999999999999987532222 12334443 2232 222233333333322222234445554444332
Q ss_pred ----eeEEEEEcCccCC--hhhHHHhhhhcC
Q 044878 245 ----KFLIVLDDVWDKK--YELWQALKSPFM 269 (368)
Q Consensus 245 ----r~LlVlDdvw~~~--~~~~~~l~~~l~ 269 (368)
-=+|++|-.-... ......+...+.
T Consensus 317 ~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 317 EEARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred hccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 2467777764322 233445554443
No 172
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0038 Score=57.98 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=45.5
Q ss_pred CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HHhhcCCC-CceeCCCCChhHHHHHHHHh
Q 044878 244 KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VALTMGSG-KNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 244 kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~~~~~-~~~~l~~L~~~~~~~lf~~~ 313 (368)
++-++|+|++...+...-+.+...+.....++.+|++|.+.. +...+... ..+.+.+++.++..+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 444556788877776666777766654445666777777654 33222221 46889999999988777553
No 173
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.40 E-value=0.003 Score=61.82 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=80.9
Q ss_pred CceecccccHHHHHHHHhc--C--CCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLK--N--DPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~--~--~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
.++.|.+..++.+.+.... . ..-+...++-|.++|++|+|||.+|+.+.+.. .-.| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~---~~l~~~~--------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLPL---LRLDVGK--------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCE---EEEEhHH---------
Confidence 4677877666665543211 0 00001345678899999999999999999873 2221 1111111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC--------Chhh----HHHhhhhcCCCCCCcEEEEEeCChH
Q 044878 218 AILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK--------KYEL----WQALKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 218 ~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~--------~~~~----~~~l~~~l~~~~~gs~IivTtR~~~ 285 (368)
+.....+. ....+..+........+++|++|++..- +... ...+...+.....+--||.||...+
T Consensus 295 -l~~~~vGe--se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 295 -LFGGIVGE--SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred -hcccccCh--HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 11000000 0112223333333338899999998521 0001 1112222222233445666776543
Q ss_pred HH-hh-c---CCCCceeCCCCChhHHHHHHHHhhcC
Q 044878 286 VA-LT-M---GSGKNYELKLLSDDDCWSVFVNHAFE 316 (368)
Q Consensus 286 va-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~ 316 (368)
-. .. . .-...+.+..-+.++-.++|..+.-.
T Consensus 372 ~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 372 LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 21 11 1 12356788888888888888877633
No 174
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0053 Score=59.02 Aligned_cols=160 Identities=18% Similarity=0.168 Sum_probs=86.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc---
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA--- 243 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~--- 243 (368)
..+..+.+.|++|+|||+||..+... ..|..+--++-..-....+ ......+.......
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~---S~FPFvKiiSpe~miG~sE---------------saKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS---SDFPFVKIISPEDMIGLSE---------------SAKCAHIKKIFEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh---cCCCeEEEeChHHccCccH---------------HHHHHHHHHHHHHhhcC
Confidence 46677888999999999999999875 4454332222111000000 00001111111111
Q ss_pred CeeEEEEEcCccCChhhHH------------HhhhhcCCCC-CCcE--EEEEeCChHHHhhcCCC----CceeCCCCCh-
Q 044878 244 KKFLIVLDDVWDKKYELWQ------------ALKSPFMAGA-PGSR--IIVTTRSMVVALTMGSG----KNYELKLLSD- 303 (368)
Q Consensus 244 kr~LlVlDdvw~~~~~~~~------------~l~~~l~~~~-~gs~--IivTtR~~~va~~~~~~----~~~~l~~L~~- 303 (368)
+--.||+||+... -+|- .+...|.... .|-| |+-||....+...|+.. ..|++..++.
T Consensus 598 ~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 598 PLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 4467999999432 3333 3333443332 2434 55577777887777633 4788999987
Q ss_pred hHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcC
Q 044878 304 DDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRS 353 (368)
Q Consensus 304 ~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~ 353 (368)
++..+.++..- .....+...++.+...+| +-..|+-+-.++..
T Consensus 676 ~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie~ 718 (744)
T KOG0741|consen 676 EQLLEVLEELN-----IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIEM 718 (744)
T ss_pred HHHHHHHHHcc-----CCCcchhHHHHHHHhccc--cchhHHHHHHHHHH
Confidence 66666665532 112235566677777777 33345555444433
No 175
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.37 E-value=0.00063 Score=59.07 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=37.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
+.-.++.|+|++|+|||+|+.++.... ......++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~-~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA-ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEECCC-CCHHHHHH
Confidence 446899999999999999999988763 33346788998875 66655544
No 176
>PRK06696 uridine kinase; Validated
Probab=97.34 E-value=0.00025 Score=62.38 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=34.7
Q ss_pred ccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 147 RDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
|.+-+++|.+.+..... ..+.+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 55667777777765332 56889999999999999999999876
No 177
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.34 E-value=0.0045 Score=64.20 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=91.8
Q ss_pred CceecccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.++.|.+..++.|.+.+...-.. +...++-+.++|++|+|||+||+.+.+. ...+| +.++. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e-~~~~f-----i~v~~----~- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE-SGANF-----IAVRG----P- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh-cCCCE-----EEEeh----H-
Confidence 34677777777776665321000 0023455788999999999999999987 33333 22221 0
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC--------Ch----hhHHHhhhhcCC--CCCCcEEEEE
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK--------KY----ELWQALKSPFMA--GAPGSRIIVT 280 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~--------~~----~~~~~l~~~l~~--~~~gs~IivT 280 (368)
+++....+. ....+..+........+.+|+||++... .. .....+...+.. ...+--||.|
T Consensus 522 ---~l~~~~vGe--se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 522 ---EILSKWVGE--SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred ---HHhhcccCc--HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 111111110 0112233333334447799999998431 00 012223333321 1234456667
Q ss_pred eCChHHHhh--c---CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 281 TRSMVVALT--M---GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 281 tR~~~va~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
|...+.... . .-...+.+.+.+.++-.++|..+.-.. ......++ ..+++.|.|.-
T Consensus 597 Tn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 597 TNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred CCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCCH----HHHHHHcCCCC
Confidence 766543221 1 123567888888888888887654222 11111233 34556666644
No 178
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.32 E-value=0.0023 Score=58.77 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=72.2
Q ss_pred ccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh--ccccccCeEE----EEecCCC----C-----
Q 044878 147 RDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK--LTEAFEPKAW----VCVSDDF----D----- 211 (368)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~F~~~~w----v~vs~~~----~----- 211 (368)
|..+..--+++|+. +.+..|.+.|.+|.|||-||-...=.. .+..|.-.+- +.+++.. .
T Consensus 229 rn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 229 RNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred ccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 56666667777876 567899999999999999987654332 3444442221 2233321 0
Q ss_pred HHHHHHHHH---HHhccCCCCCCChHHHHHHHHhc---------------CeeEEEEEcCccCChhhHHHhhhhcCCCCC
Q 044878 212 VLRISKAIL---ESITLSSCGLTDLNSVQLKLKEA---------------KKFLIVLDDVWDKKYELWQALKSPFMAGAP 273 (368)
Q Consensus 212 ~~~l~~~il---~~l~~~~~~~~~~~~l~~~l~~~---------------kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 273 (368)
..-.++.|. +.+....... ...+...+.+. ..-+|++|...+.++.+...+. ...+.
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTil---tR~G~ 377 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTIL---TRAGE 377 (436)
T ss_pred ccchHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHH---HhccC
Confidence 111111222 2222221111 22222222221 5668999999988776665554 44678
Q ss_pred CcEEEEEeCChH
Q 044878 274 GSRIIVTTRSMV 285 (368)
Q Consensus 274 gs~IivTtR~~~ 285 (368)
||||+.|--..+
T Consensus 378 GsKIVl~gd~aQ 389 (436)
T COG1875 378 GSKIVLTGDPAQ 389 (436)
T ss_pred CCEEEEcCCHHH
Confidence 999999875433
No 179
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.31 E-value=0.0012 Score=54.36 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=29.1
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF 210 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~ 210 (368)
++.|+|++|+||||++..+.... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~-~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI-ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH-HhcCCEEEEEECCcch
Confidence 36799999999999999998874 2233456777766544
No 180
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0051 Score=56.46 Aligned_cols=188 Identities=15% Similarity=0.185 Sum_probs=100.2
Q ss_pred ceecccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
++=|.++++++|.+...-+=.. +...++=|.++|++|.|||-||++|.++ ....| +.|..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~-T~AtF-----Irvvg------- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ-TDATF-----IRVVG------- 218 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc-cCceE-----EEecc-------
Confidence 4667888888888775322100 1134566889999999999999999998 44444 33332
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC-----------ChhhHHHh---hhhcCCC--CCCcEEEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK-----------KYELWQAL---KSPFMAG--APGSRIIV 279 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~-----------~~~~~~~l---~~~l~~~--~~gs~Iiv 279 (368)
.++....-+.. ..=..++...-++..+.+|.+|.+..- +.+.-..+ ...+-.. ...-|||.
T Consensus 219 -SElVqKYiGEG--aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ 295 (406)
T COG1222 219 -SELVQKYIGEG--ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIM 295 (406)
T ss_pred -HHHHHHHhccc--hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEE
Confidence 12222222111 111223333344448889999988431 11111222 2222211 23459999
Q ss_pred EeCChHHHhh--cCCC---CceeCCCCChhHH-HHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh----HHHHHHHH
Q 044878 280 TTRSMVVALT--MGSG---KNYELKLLSDDDC-WSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP----LAARALGG 349 (368)
Q Consensus 280 TtR~~~va~~--~~~~---~~~~l~~L~~~~~-~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP----Lai~~~~~ 349 (368)
.|...++... +..+ ..+++. |+..+. .++|.-++ ...+....-+++. |++.|.|+- -|+-+=||
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHt-rkM~l~~dvd~e~----la~~~~g~sGAdlkaictEAG 369 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHT-RKMNLADDVDLEL----LARLTEGFSGADLKAICTEAG 369 (406)
T ss_pred ecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHh-hhccCccCcCHHH----HHHhcCCCchHHHHHHHHHHh
Confidence 9987765422 2333 456666 555555 55565554 3333333345555 455565554 34444556
Q ss_pred Hhc
Q 044878 350 LLR 352 (368)
Q Consensus 350 ~L~ 352 (368)
++.
T Consensus 370 m~A 372 (406)
T COG1222 370 MFA 372 (406)
T ss_pred HHH
Confidence 544
No 181
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.26 E-value=0.0039 Score=64.23 Aligned_cols=134 Identities=16% Similarity=0.099 Sum_probs=75.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH-HH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA-IL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~-il 220 (368)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++..... -...+.+.+..-. ..++.. ++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-~~~~v~i~c~~~~--~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGRN-NRRMVKMNCAAMP--AGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCC-CCCeEEEecccCC--hhHhhhhhc
Confidence 469999998888877665432 222457899999999999999999863111 1233334333321 122222 21
Q ss_pred HHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCCh
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSM 284 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 284 (368)
........+. .......+.....=.|+||+|..........+...+..+. .+.|||.||...
T Consensus 449 g~~~~~~~g~--~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 449 GHERGAFTGA--SAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred Cccccccccc--ccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 1111110110 0111122323355679999998877666777777664321 245888888653
No 182
>PRK04296 thymidine kinase; Provisional
Probab=97.25 E-value=0.00085 Score=57.39 Aligned_cols=111 Identities=13% Similarity=-0.025 Sum_probs=60.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCC--CCChHHHHHHHHh-c-Ce
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCG--LTDLNSVQLKLKE-A-KK 245 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~--~~~~~~l~~~l~~-~-kr 245 (368)
.++.|+|+.|.||||+|..+.... ..+-..+..+. ..++.......++++++..... ......+...+.+ . +.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~-~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY-EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH-HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCC
Confidence 467889999999999998888774 22222223331 1112222233345555432211 2233444444332 2 33
Q ss_pred eEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH
Q 044878 246 FLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 246 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 285 (368)
-+||+|.+.-.+.++...+...+ ...|..||+|.+..+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 48999999654333333344433 246789999998843
No 183
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.24 E-value=0.0017 Score=59.15 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=46.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCC-CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-C
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDD-FDVLRISKAILESITLSSCGLTDLNSVQLKLKEA-K 244 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-k 244 (368)
..+++.|+|++|+||||++..+.... .+..-..+..|+.... ....+.+..-.+.++.......+...+...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLRD 272 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHccC
Confidence 45799999999999999999988764 2211123445554321 1122233333333333222233444455555544 3
Q ss_pred eeEEEEEcC
Q 044878 245 KFLIVLDDV 253 (368)
Q Consensus 245 r~LlVlDdv 253 (368)
.=+|++|..
T Consensus 273 ~d~vliDt~ 281 (282)
T TIGR03499 273 KDLILIDTA 281 (282)
T ss_pred CCEEEEeCC
Confidence 346777753
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.23 E-value=0.0042 Score=64.43 Aligned_cols=179 Identities=15% Similarity=0.151 Sum_probs=88.9
Q ss_pred CceecccccHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDP-------SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.++.|.+..++++.+++...-. -.....+-+.++|++|+||||||+.+.+. ....| +.++.. +
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~-~~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE-AGAYF-----ISINGP----E 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH-hCCeE-----EEEecH----H
Confidence 3478999998888877642100 00023456889999999999999999987 32222 222211 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC-----------hhhHHHhhhhcCCC-CCCcEEEE-Ee
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK-----------YELWQALKSPFMAG-APGSRIIV-TT 281 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l~~~-~~gs~Iiv-Tt 281 (368)
+ ....... ....+..+........+.+|+||++.... ......+...+... ..+..+++ ||
T Consensus 248 i----~~~~~g~--~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~at 321 (733)
T TIGR01243 248 I----MSKYYGE--SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGAT 321 (733)
T ss_pred H----hcccccH--HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeec
Confidence 1 0000000 00112223333333366799999984321 01122333333221 22334444 45
Q ss_pred CChH-HHhhc----CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 282 RSMV-VALTM----GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 282 R~~~-va~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
.... +...+ .-...+.+...+.++-.+++....-. ........ ...+++.+.|..
T Consensus 322 n~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~-~~l~~d~~----l~~la~~t~G~~ 381 (733)
T TIGR01243 322 NRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN-MPLAEDVD----LDKLAEVTHGFV 381 (733)
T ss_pred CChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC-CCCccccC----HHHHHHhCCCCC
Confidence 4332 11111 11235777777888888888754422 11111112 345677777764
No 185
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.23 E-value=0.014 Score=57.97 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=119.0
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh----ccccccCeEEEEec--CCCCHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK----LTEAFEPKAWVCVS--DDFDVLR 214 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~F~~~~wv~vs--~~~~~~~ 214 (368)
+..+-+|+.+..+|..++...=... ..-+.+.|.|-+|+|||..+..|.+.. -++.-....+|.+. .-....+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~-~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQ-GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCC-CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHH
Confidence 4567799999999999886522111 233589999999999999999999864 12222223344433 3346889
Q ss_pred HHHHHHHHhccCCCCC-CChHHHHHHHHh---c-CeeEEEEEcCccCChhhHHHhhhhcCCC-CCCcEEEEEeCC--hHH
Q 044878 215 ISKAILESITLSSCGL-TDLNSVQLKLKE---A-KKFLIVLDDVWDKKYELWQALKSPFMAG-APGSRIIVTTRS--MVV 286 (368)
Q Consensus 215 l~~~il~~l~~~~~~~-~~~~~l~~~l~~---~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTtR~--~~v 286 (368)
+...|...+.+..... ..++.+...... . +..+|++|++...-...-+-+...|.+- .++||++|.+=. .+.
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 9999999998765432 334444444431 1 7789999998432111223445555532 467876665421 111
Q ss_pred Hh-hcC-------CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 287 AL-TMG-------SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 287 a~-~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
.. .+. ...-+...|-+.++-.++...+..+. +...+...+-++++++.-.|-.-.|+...-+
T Consensus 554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 11 111 11245666777777666666655333 2222234455556666666655555554433
No 186
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.21 E-value=0.0031 Score=55.78 Aligned_cols=87 Identities=18% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-cccc----ccCeEEEEecCCCCHHHHHHHHHHHhccCCC------------C
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA----FEPKAWVCVSDDFDVLRISKAILESITLSSC------------G 229 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------------~ 229 (368)
..-.++.|+|++|+|||+||.++.-.. .... ...++|++....++..++.. +++..+.... .
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCC
Confidence 345799999999999999999997543 2221 35789999888777655533 3333322110 1
Q ss_pred CCCh----HHHHHHHHhc-CeeEEEEEcCc
Q 044878 230 LTDL----NSVQLKLKEA-KKFLIVLDDVW 254 (368)
Q Consensus 230 ~~~~----~~l~~~l~~~-kr~LlVlDdvw 254 (368)
..++ ..+...+.+. +.-|||+|.+.
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1111 2233334444 66799999994
No 187
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0016 Score=58.33 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=49.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHh-c-CeeE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKE-A-KKFL 247 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~-kr~L 247 (368)
.-+.++|++|+|||.||.++.+... ..--.+.+++ ..+++.++...... .....+|.. . +-=|
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~------~~el~~~Lk~~~~~--------~~~~~~l~~~l~~~dl 170 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFIT------APDLLSKLKAAFDE--------GRLEEKLLRELKKVDL 170 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEE------HHHHHHHHHHHHhc--------CchHHHHHHHhhcCCE
Confidence 4588999999999999999999854 3323445554 34455555555442 112222333 2 3449
Q ss_pred EEEEcCccCChhhHH
Q 044878 248 IVLDDVWDKKYELWQ 262 (368)
Q Consensus 248 lVlDdvw~~~~~~~~ 262 (368)
|||||+-......|.
T Consensus 171 LIiDDlG~~~~~~~~ 185 (254)
T COG1484 171 LIIDDIGYEPFSQEE 185 (254)
T ss_pred EEEecccCccCCHHH
Confidence 999999765555554
No 188
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.21 E-value=0.0014 Score=60.98 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=73.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|....+.++.+.+..-.. ...-|.|+|..|+||+++|+.++... ...-...+.|.++.. +...+-..++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s-~r~~~pfv~v~c~~~-~~~~~~~~lfg 79 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLS-SRWQGPFISLNCAAL-NENLLDSELFG 79 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhC-CccCCCeEEEeCCCC-CHHHHHHHHcc
Confidence 3588999888888887765432 22347799999999999999998652 111112233443332 22222222221
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRS 283 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 283 (368)
.-.....+... .-...+.....=.|+||+|..........+...+..+. ...+||.||..
T Consensus 80 ~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 80 HEAGAFTGAQK--RHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccCCccc--ccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 11000000000 00111222244568899998877777777777664321 12588888765
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.20 E-value=0.0033 Score=62.83 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=74.8
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
...++|....+.++.+.+..-. ....-|.|+|..|+|||++|+.+++.. ...-...+.|.++.- . ...+...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s-~r~~~pfv~i~c~~~-~-~~~~~~~- 266 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLS-PRAKRPFVKVNCAAL-S-ETLLESE- 266 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhC-CCCCCCeEEeecCCC-C-HHHHHHH-
Confidence 4579999999999888876533 122346799999999999999999863 111112233333332 1 1222221
Q ss_pred HHhccCCCC-CCC-hHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCC
Q 044878 221 ESITLSSCG-LTD-LNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRS 283 (368)
Q Consensus 221 ~~l~~~~~~-~~~-~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 283 (368)
+.+...+ ... ...-...+.....-.|+||++..........+...+..+. ...+||.||..
T Consensus 267 --lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 267 --LFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred --HcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 2111110 000 0000001111245578999998877777777777664321 12488888754
No 190
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0024 Score=60.64 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++.++|++|+||||++.++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999865
No 191
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.18 E-value=0.00077 Score=58.09 Aligned_cols=111 Identities=9% Similarity=0.124 Sum_probs=56.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHH-HHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVL-RISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~-~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
.++.|+|+.|+||||++..+... ...+....++.- .++.... .-...++.+-... .................+=+|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~-~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~vg-~~~~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY-INKNKTHHILTI-EDPIEFVHESKRSLINQREVG-LDTLSFENALKAALRQDPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-hhhcCCcEEEEE-cCCccccccCccceeeecccC-CCccCHHHHHHHHhcCCcCEE
Confidence 47899999999999999988776 333333344332 2211100 0000111110000 112233333333332356689
Q ss_pred EEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHh
Q 044878 249 VLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVAL 288 (368)
Q Consensus 249 VlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 288 (368)
++|++-+ .+....+.... ..|-.++.|+...++..
T Consensus 79 i~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 79 LVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred EEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 9999943 34444433322 34656888888766553
No 192
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.17 E-value=0.0013 Score=59.06 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=37.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCC-CHHHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDF-DVLRISKAILE 221 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~-~~~~l~~~il~ 221 (368)
.-++|.|..|+|||||++.+++. ++.+|+ .++++.+++.. .+.++.+++..
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~-i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN-IAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH-HHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 45889999999999999999998 444454 45666677765 34555555554
No 193
>PRK13695 putative NTPase; Provisional
Probab=97.15 E-value=0.00061 Score=57.41 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-+.|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998763
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0018 Score=60.98 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=47.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecC-CCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-C
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSD-DFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA-K 244 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-k 244 (368)
.-.++.++|+.|+||||++.++.... .+.....+..++... .....+-++...+.++.......+...+...+.+. +
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34689999999999999999998764 221123445554322 12334444544555544332222222233333333 3
Q ss_pred eeEEEEEcCc
Q 044878 245 KFLIVLDDVW 254 (368)
Q Consensus 245 r~LlVlDdvw 254 (368)
.-+|++|..-
T Consensus 216 ~DlVLIDTaG 225 (374)
T PRK14722 216 KHMVLIDTIG 225 (374)
T ss_pred CCEEEEcCCC
Confidence 4556677774
No 195
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0035 Score=62.28 Aligned_cols=155 Identities=15% Similarity=0.007 Sum_probs=77.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC--CHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCe
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF--DVLRISKAILESITLSSCGLTDLNSVQLKLKEAKK 245 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr 245 (368)
...-|.|.|+.|+|||+||+.+++...+++.-.+..|+.+.-- ....+++.+. ........+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~--------------~vfse~~~~~P 495 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLN--------------NVFSEALWYAP 495 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHH--------------HHHHHHHhhCC
Confidence 3456889999999999999999987534444445555554421 1222222111 11122222388
Q ss_pred eEEEEEcCccC------ChhhHHH----hhhhcC-----CCCCCcE--EEEEeCChHHH-hhcCC----CCceeCCCCCh
Q 044878 246 FLIVLDDVWDK------KYELWQA----LKSPFM-----AGAPGSR--IIVTTRSMVVA-LTMGS----GKNYELKLLSD 303 (368)
Q Consensus 246 ~LlVlDdvw~~------~~~~~~~----l~~~l~-----~~~~gs~--IivTtR~~~va-~~~~~----~~~~~l~~L~~ 303 (368)
-+|||||+..- ...+|.. +..++. ....+.+ +|.|....... ..... ..+..|.++..
T Consensus 496 SiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 496 SIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred cEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 89999998421 1122221 111110 1233444 44444432211 11111 13567888888
Q ss_pred hHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCC
Q 044878 304 DDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGL 340 (368)
Q Consensus 304 ~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~Gl 340 (368)
.+-.++++... ..... ........-+..+|+|.
T Consensus 576 ~~R~~IL~~~~-s~~~~---~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 576 TRRKEILTTIF-SKNLS---DITMDDLDFLSVKTEGY 608 (952)
T ss_pred hHHHHHHHHHH-Hhhhh---hhhhHHHHHHHHhcCCc
Confidence 77777766553 22111 11122223377788773
No 196
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.14 E-value=0.00093 Score=58.25 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=58.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCC-------CCChHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCG-------LTDLNSVQLKLK 241 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~-------~~~~~~l~~~l~ 241 (368)
.+++.|+|+.|.|||||.+.+.......+-....|.. . ... .++.++...+.....- ...+..+...+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~--~-~~~-~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~ 104 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD--S-ATI-GLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALR 104 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC--C-cEE-eeeeeeeeeeCCccChhhccchHHHHHHHHHHHHH
Confidence 4889999999999999999987432101111111110 0 000 0111222222221110 011222222222
Q ss_pred hc-CeeEEEEEcCccCC-hhhHH----HhhhhcCCC-CCCcEEEEEeCChHHHhhc
Q 044878 242 EA-KKFLIVLDDVWDKK-YELWQ----ALKSPFMAG-APGSRIIVTTRSMVVALTM 290 (368)
Q Consensus 242 ~~-kr~LlVlDdvw~~~-~~~~~----~l~~~l~~~-~~gs~IivTtR~~~va~~~ 290 (368)
.. ++-|++||...... ..+.. .+...+... ..+..+|+||...+++...
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 22 88999999996532 11211 122223222 2345899999998887654
No 197
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.13 E-value=0.0029 Score=55.62 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=36.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccc------cCeEEEEecCCCCHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAF------EPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F------~~~~wv~vs~~~~~~~l~ 216 (368)
..-.++.|+|++|+|||+||.++.... ...- ..++|+.....++...+.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~-~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA-QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh-hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 445799999999999999999987653 2222 467899887777765543
No 198
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.13 E-value=0.0026 Score=55.95 Aligned_cols=47 Identities=11% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
..-.++.|+|++|+|||+||.++.... ...-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~-~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA-AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEECC-CCCHHHH
Confidence 345799999999999999999998764 2334677899877 5555544
No 199
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.13 E-value=0.0022 Score=55.12 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=53.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHH-------
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLK------- 241 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~------- 241 (368)
-++..|.|++|+||||++..+.... ... ...+.+.....-.... +.+..+... ..+..+.....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~-~~~-g~~v~~~apT~~Aa~~----L~~~~~~~a---~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEAL-EAA-GKRVIGLAPTNKAAKE----LREKTGIEA---QTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHH-HHT-T--EEEEESSHHHHHH----HHHHHTS-E---EEHHHHTTEECCEECCSS
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHH-HhC-CCeEEEECCcHHHHHH----HHHhhCcch---hhHHHHHhcCCccccccc
Confidence 3678889999999999999987763 222 2333333333222222 222322110 01111000000
Q ss_pred --hcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 242 --EAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 242 --~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
..+.-+||+|+..-.+...+..+....+. .|+++|+.-=.
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 01446999999987766677777776654 57788876543
No 200
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.12 E-value=0.0062 Score=55.48 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=97.9
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCH-HHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDV-LRISKAI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~-~~l~~~i 219 (368)
...++|-.++..++-.++...-.. +...-+.|+||.|.|||+|...+..+ .+..=+...-|........ .-.++.|
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 456889988888888887542111 12234779999999999999888877 2222233355555554432 2234444
Q ss_pred HHHhccC----CC----CCCChHHHHHHHHhc-----CeeEEEEEcCccCChhhHHH-hhhhcC----CCCCCcEEEEEe
Q 044878 220 LESITLS----SC----GLTDLNSVQLKLKEA-----KKFLIVLDDVWDKKYELWQA-LKSPFM----AGAPGSRIIVTT 281 (368)
Q Consensus 220 l~~l~~~----~~----~~~~~~~l~~~l~~~-----kr~LlVlDdvw~~~~~~~~~-l~~~l~----~~~~gs~IivTt 281 (368)
..++... .. -.+++..+...|... -++++|+|.+.-.-+..-.. +...|. ...+=+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 4444322 11 234556666666654 55788888874321111111 112221 233455677899
Q ss_pred CChHHH-------hhcCCCCceeCCCCChhHHHHHHHHhh
Q 044878 282 RSMVVA-------LTMGSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 282 R~~~va-------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
|-.... ....-..++-+++++-++...++++-.
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 865332 222222356677888899999988876
No 201
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.12 E-value=0.006 Score=60.48 Aligned_cols=135 Identities=15% Similarity=0.166 Sum_probs=77.2
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH-HH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK-AI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~-~i 219 (368)
...++|....++++.+.+..-. ....-|.|+|..|+|||++|+.++... ...-...+.|.++.-.+ ..+. ++
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s-~r~~~p~v~v~c~~~~~--~~~e~~l 258 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAAS-PRADKPLVYLNCAALPE--SLAESEL 258 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhC-CcCCCCeEEEEcccCCh--HHHHHHh
Confidence 4579999999999988887644 233457899999999999999999863 11112334444443221 2222 12
Q ss_pred HHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCCh
Q 044878 220 LESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSM 284 (368)
Q Consensus 220 l~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 284 (368)
+-.....-.+... . -...+.....=.|+||++..........+...+..+. ...|||.||...
T Consensus 259 fG~~~g~~~ga~~-~-~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 259 FGHVKGAFTGAIS-N-RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred cCccccccCCCcc-c-CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 1111110000000 0 0001112244457999998877777777777664321 145888888653
No 202
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.10 E-value=0.0021 Score=54.15 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=28.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEE
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWV 204 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv 204 (368)
....+|.+.|+.|+||||+|+.+++. ....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~-l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER-LKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH-HHHcCCcEEEE
Confidence 45579999999999999999999987 34444444444
No 203
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.07 E-value=0.00038 Score=68.13 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=39.7
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+++|.++.+++|++.|......-...-+++.++||+|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999983311100145579999999999999999999886
No 204
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.07 E-value=0.0016 Score=56.41 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=61.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCC-------ChHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLT-------DLNSVQLKLK 241 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~-------~~~~l~~~l~ 241 (368)
.+++.|.|+.|.||||+.+.+.--.+..+.. .+|... ...-.+...|+..+...+.... .+.++...+.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G--~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~ 104 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIG--CFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILD 104 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcC--CCcchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHH
Confidence 3789999999999999999987543111111 111110 0111223333333333221111 1122222222
Q ss_pred hc-CeeEEEEEcCccCC-hhh----HHHhhhhcCCCCCCcEEEEEeCChHHHhhcCC
Q 044878 242 EA-KKFLIVLDDVWDKK-YEL----WQALKSPFMAGAPGSRIIVTTRSMVVALTMGS 292 (368)
Q Consensus 242 ~~-kr~LlVlDdvw~~~-~~~----~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~ 292 (368)
.. ++-|+++|...... +.+ ...+...+.. .|+.+|++|...+++.....
T Consensus 105 ~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 105 YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 22 78899999985432 222 1222333332 37899999999998876553
No 205
>PHA02244 ATPase-like protein
Probab=97.07 E-value=0.0046 Score=57.72 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=53.0
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhcc-CCCCCCChHHHHHHHHhcCeeEEEE
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITL-SSCGLTDLNSVQLKLKEAKKFLIVL 250 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~-~~~~~~~~~~l~~~l~~~kr~LlVl 250 (368)
|.|+|++|+|||+||+.+.... .. -|+.++...+... ..+. ..........+..... +--+++|
T Consensus 122 VLL~GppGtGKTtLA~aLA~~l-g~-----pfv~In~l~d~~~-------L~G~i~~~g~~~dgpLl~A~~--~GgvLiL 186 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEAL-DL-----DFYFMNAIMDEFE-------LKGFIDANGKFHETPFYEAFK--KGGLFFI 186 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHh-CC-----CEEEEecChHHHh-------hcccccccccccchHHHHHhh--cCCEEEE
Confidence 6789999999999999999862 22 2333432111101 1110 1111111122333322 5679999
Q ss_pred EcCccCChhhHHHhhhhcCC-----------CCCCcEEEEEeCC
Q 044878 251 DDVWDKKYELWQALKSPFMA-----------GAPGSRIIVTTRS 283 (368)
Q Consensus 251 Ddvw~~~~~~~~~l~~~l~~-----------~~~gs~IivTtR~ 283 (368)
|++....++....|...+.. ..++.++|+|+..
T Consensus 187 DEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 187 DEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred eCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 99976555555445444421 1246688888875
No 206
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.0037 Score=54.91 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=89.0
Q ss_pred CceecccccHHH---HHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 142 PAVYGRDEDKDR---MLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 142 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
.+++|.++.+.+ |++.|.+++.=+...++-|..+|++|.|||.+|+.+.+.. +-.| +.+- . ..-
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-kvp~-----l~vk----a---t~l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-KVPL-----LLVK----A---TEL 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-CCce-----EEec----h---HHH
Confidence 467888766544 6677766543111567889999999999999999999972 2222 1111 1 111
Q ss_pred HHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC--------h----hhHHHhhhhcC--CCCCCcEEEEEeCCh
Q 044878 219 ILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK--------Y----ELWQALKSPFM--AGAPGSRIIVTTRSM 284 (368)
Q Consensus 219 il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~--------~----~~~~~l~~~l~--~~~~gs~IivTtR~~ 284 (368)
|-+.++. +...+.++.+.-++.-++++.||.+..-. . +..+.+..-+. ..+.|-.-|..|.+.
T Consensus 188 iGehVGd---gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p 264 (368)
T COG1223 188 IGEHVGD---GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP 264 (368)
T ss_pred HHHHhhh---HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCCh
Confidence 2222221 12234445555555588999999874210 0 11222222222 224566666667666
Q ss_pred HHHhhc-CC--CCceeCCCCChhHHHHHHHHhh
Q 044878 285 VVALTM-GS--GKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 285 ~va~~~-~~--~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
++.... .+ ..-++...-+++|-.+++...+
T Consensus 265 ~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 265 ELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred hhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 543221 11 1346666667788888887776
No 207
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.013 Score=59.38 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=103.1
Q ss_pred ceeccc---ccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHH
Q 044878 143 AVYGRD---EDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 143 ~~~Gr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~ 216 (368)
++-|-+ +|+.+++++|.+++. -++.-++=+.++|++|+|||-||++++-.. .+-|+++|.
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSG-------- 377 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSG-------- 377 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeech--------
Confidence 466665 455566667766431 111445668899999999999999999873 233455544
Q ss_pred HHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC---------------hhhHHHhhhhcCCCCC--CcEEEE
Q 044878 217 KAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK---------------YELWQALKSPFMAGAP--GSRIIV 279 (368)
Q Consensus 217 ~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~---------------~~~~~~l~~~l~~~~~--gs~Iiv 279 (368)
.+.++.+.... ......+...-+...+++|.+|++.... ....+++..-+..... +--++-
T Consensus 378 SEFvE~~~g~~--asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 378 SEFVEMFVGVG--ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred HHHHHHhcccc--hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 12233332211 2233444444444477888888874311 1223444443332222 223444
Q ss_pred EeCChHHHh--hcCCC---CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHH
Q 044878 280 TTRSMVVAL--TMGSG---KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAAR 345 (368)
Q Consensus 280 TtR~~~va~--~~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 345 (368)
+|...++.. .+..+ ..+.+..-+.....++|.-++-...-. .+....++ |+...-|+|=|..
T Consensus 456 ~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 456 ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHHH
Confidence 566555532 22222 467787778888888998887332221 24455555 7888888775543
No 208
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.0064 Score=51.23 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=63.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh--c--cc---ccc--CeEEEEecCCCCHHHHHHHHHHHhccCCC----CC--CCh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK--L--TE---AFE--PKAWVCVSDDFDVLRISKAILESITLSSC----GL--TDL 233 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~--~--~~---~F~--~~~wv~vs~~~~~~~l~~~il~~l~~~~~----~~--~~~ 233 (368)
-.+++|+|+.|+|||||.+.+..+. + .. .|. ...| +.+ .+.+..++.... .. -+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999986432 1 11 111 1223 222 345555554321 11 111
Q ss_pred HH-----HHHHHHhcC--eeEEEEEcCccC-ChhhHHHhhhhcCCC-CCCcEEEEEeCChHHHhhcCCCCceeC
Q 044878 234 NS-----VQLKLKEAK--KFLIVLDDVWDK-KYELWQALKSPFMAG-APGSRIIVTTRSMVVALTMGSGKNYEL 298 (368)
Q Consensus 234 ~~-----l~~~l~~~k--r~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~~~~~~~~~~l 298 (368)
.+ +...+.. + +=+++||+.-.. +....+.+...+... ..|..||++|.+.+.... ...++.+
T Consensus 91 Gq~qrl~laral~~-~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFS-EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhh-CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 11 1122222 6 789999997432 333444444444321 247789999998876542 3344444
No 209
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.04 E-value=0.0023 Score=59.61 Aligned_cols=157 Identities=14% Similarity=0.078 Sum_probs=80.9
Q ss_pred eecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHh
Q 044878 144 VYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESI 223 (368)
Q Consensus 144 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l 223 (368)
++|....+.++.+.+..-. ....-|.|+|..|+||+++|+.++... ...-...+-|.++.- . ...+...+-
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s-~r~~~pfv~vnc~~~-~-~~~l~~~lf-- 71 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLS-KRWQGPLVKLNCAAL-S-ENLLDSELF-- 71 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhc-CccCCCeEEEeCCCC-C-hHHHHHHHh--
Confidence 3677777777777665533 222347899999999999999998763 111112233333321 1 222222211
Q ss_pred ccCCCCCCChH-HHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCChHH---H-
Q 044878 224 TLSSCGLTDLN-SVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSMVV---A- 287 (368)
Q Consensus 224 ~~~~~~~~~~~-~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~~v---a- 287 (368)
+.......... .-...+.....-.|+||++...+......+...+..+. ...|||.||...-. .
T Consensus 72 G~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~ 151 (329)
T TIGR02974 72 GHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAE 151 (329)
T ss_pred ccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhc
Confidence 11100000000 00011222255679999998777666667766664321 23488888754311 1
Q ss_pred --------hhcCCCCceeCCCCC--hhHHHHHH
Q 044878 288 --------LTMGSGKNYELKLLS--DDDCWSVF 310 (368)
Q Consensus 288 --------~~~~~~~~~~l~~L~--~~~~~~lf 310 (368)
..+ ....+.+.||. .+|--.|+
T Consensus 152 g~fr~dL~~rl-~~~~i~lPpLReR~eDI~~L~ 183 (329)
T TIGR02974 152 GRFRADLLDRL-AFDVITLPPLRERQEDIMLLA 183 (329)
T ss_pred CchHHHHHHHh-cchhcCCCchhhhhhhHHHHH
Confidence 111 12367888887 35544443
No 210
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.03 E-value=0.0094 Score=57.49 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=46.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhc-cccccCeEEEEecCCCC--HHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-C
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKL-TEAFEPKAWVCVSDDFD--VLRISKAILESITLSSCGLTDLNSVQLKLKEA-K 244 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~F~~~~wv~vs~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-k 244 (368)
.+++.++|++|+||||++.++..... ...-..+..|+... +. ..+-++.-.+.++.......+...+...+... .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 36899999999999999988876532 22233455565432 22 11222222333333222223344555555544 3
Q ss_pred eeEEEEEcCc
Q 044878 245 KFLIVLDDVW 254 (368)
Q Consensus 245 r~LlVlDdvw 254 (368)
.=+|++|..-
T Consensus 300 ~DlVlIDt~G 309 (424)
T PRK05703 300 CDVILIDTAG 309 (424)
T ss_pred CCEEEEeCCC
Confidence 4578888663
No 211
>PRK07667 uridine kinase; Provisional
Probab=97.03 E-value=0.001 Score=57.07 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 151 KDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.|.+.+.... ....+|+|-|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456677775544 45589999999999999999999876
No 212
>PTZ00301 uridine kinase; Provisional
Probab=97.01 E-value=0.00096 Score=57.90 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|+|.|++|+||||||+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999988765
No 213
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.98 E-value=0.0032 Score=53.41 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=30.2
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
+.|.|++|+|||+|+.++.....+ .=..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCC--CHHHHHHH
Confidence 678999999999999998776322 224567887654 34444443
No 214
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.95 E-value=0.0089 Score=50.46 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 57999999999999999999865
No 215
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.94 E-value=0.0059 Score=57.74 Aligned_cols=83 Identities=22% Similarity=0.216 Sum_probs=54.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 242 (368)
.-.++.|.|.+|+|||||+.++.... ...-..++|++.... ..++ ..-+..++.... ...+++.+...+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~-a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL-AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 34689999999999999999998763 222345677765443 3332 222344443222 23456777777766
Q ss_pred cCeeEEEEEcCc
Q 044878 243 AKKFLIVLDDVW 254 (368)
Q Consensus 243 ~kr~LlVlDdvw 254 (368)
.+.-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 677789999984
No 216
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0051 Score=57.53 Aligned_cols=81 Identities=22% Similarity=0.255 Sum_probs=58.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHhcC
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKEAK 244 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~~k 244 (368)
.++.|-|.+|+|||||.-++..+. ...- .+.+|+--+. ..+ .+--.++++.... ...+++.+.+.+.+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~l-A~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~ 168 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARL-AKRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK 168 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHH-HhcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC
Confidence 689999999999999999999884 2222 6667665443 333 2334556664433 3478889999999889
Q ss_pred eeEEEEEcCcc
Q 044878 245 KFLIVLDDVWD 255 (368)
Q Consensus 245 r~LlVlDdvw~ 255 (368)
+-|+|+|.+..
T Consensus 169 p~lvVIDSIQT 179 (456)
T COG1066 169 PDLVVIDSIQT 179 (456)
T ss_pred CCEEEEeccce
Confidence 99999999843
No 217
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.93 E-value=0.0065 Score=57.20 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=53.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCe
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKK 245 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr 245 (368)
..++=+.|||..|.|||.|+-.+|+.. ++..- .........++-+.+.........+..+...+.+ +.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~----------R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~ 128 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR----------RVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ES 128 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccc----------cccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cC
Confidence 457789999999999999999999985 32110 0111234444444444333344556677777766 66
Q ss_pred eEEEEEcCccCChh
Q 044878 246 FLIVLDDVWDKKYE 259 (368)
Q Consensus 246 ~LlVlDdvw~~~~~ 259 (368)
.||.||.+.-.+..
T Consensus 129 ~lLcfDEF~V~Dia 142 (362)
T PF03969_consen 129 RLLCFDEFQVTDIA 142 (362)
T ss_pred CEEEEeeeeccchh
Confidence 69999998665443
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.92 E-value=0.0054 Score=52.69 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=49.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC-CCCHHHHHHHHHHHhccCCC---CCCCh-HHHHHHHHhc
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD-DFDVLRISKAILESITLSSC---GLTDL-NSVQLKLKEA 243 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~---~~~~~-~~l~~~l~~~ 243 (368)
++++.++|+.|+||||.+-++....... -..+..++... .....+-++...+.++.+.. ...+. +.+.+.+.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 4799999999999999888887764222 33556666542 23555667777777765421 12222 2233333332
Q ss_pred --C-eeEEEEEcCc
Q 044878 244 --K-KFLIVLDDVW 254 (368)
Q Consensus 244 --k-r~LlVlDdvw 254 (368)
+ .=+|++|-.-
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 2 3377778764
No 219
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.018 Score=52.18 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=29.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-cc--ccccCeEEEEec
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LT--EAFEPKAWVCVS 207 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~F~~~~wv~vs 207 (368)
.++|.++||+|.|||+|++.++... ++ +.|....-+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 4889999999999999999999986 43 444444445444
No 220
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0032 Score=58.28 Aligned_cols=34 Identities=12% Similarity=-0.021 Sum_probs=26.4
Q ss_pred HHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHHh
Q 044878 10 ELLKLAGQEGVRSKLKKWEETLKTIEAVLIDAEE 43 (368)
Q Consensus 10 l~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~ 43 (368)
+..+|++......-.-.++.-|..|+..+..+..
T Consensus 12 ~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~~d 45 (491)
T KOG0738|consen 12 LAREYALLGNYDSAGIYYRGLLYLMNRYLVSTGD 45 (491)
T ss_pred HHHHHHHhcCcchhHHHHHhHHHHHHHHHhccCC
Confidence 4567888888888888888888888888876543
No 221
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.91 E-value=0.0055 Score=53.56 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD 211 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~ 211 (368)
..-.++.|.|++|+||||||.++.... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~-~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET-AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEECCCCCH
Confidence 345789999999999999999998763 22234567887655543
No 222
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.90 E-value=0.0026 Score=58.57 Aligned_cols=82 Identities=16% Similarity=0.113 Sum_probs=50.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLK 241 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 241 (368)
+.-+++-|.|++|+||||||.++.... ...-..++|+.....++.. .+++++.+.. .....++....+.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~-~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA-QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 455799999999999999999987763 3334567888776655543 2334432211 1122333333332
Q ss_pred ---h-cCeeEEEEEcCc
Q 044878 242 ---E-AKKFLIVLDDVW 254 (368)
Q Consensus 242 ---~-~kr~LlVlDdvw 254 (368)
+ ...-+||+|.+-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 2 256689999984
No 223
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.016 Score=60.05 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=79.1
Q ss_pred CCceecccccHHHHHHHHhcCCCCCC--CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDA--ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
...++|.++.+..|.+.+.....+.. .....+.+.|+.|+|||-||+.+..- +-+..+..+-+..|. ...
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~-~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY-VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH-HcCCccceEEechhh------hhh-
Confidence 45689999999999998876442211 25678888999999999999999876 333333334443333 222
Q ss_pred HHHHhccCCC---CCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcC
Q 044878 219 ILESITLSSC---GLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFM 269 (368)
Q Consensus 219 il~~l~~~~~---~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 269 (368)
...+....+ +.....++.+.+++..-.+|.||||..-++.....+...+.
T Consensus 633 -vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD 685 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLD 685 (898)
T ss_pred -hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHh
Confidence 333333322 23455678888888555688999997766666665555553
No 224
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.89 E-value=0.0023 Score=61.87 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=84.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHH-
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAI- 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~i- 219 (368)
..++||++.++.+...+..+. -+.|.|++|+|||+||+.+.... -...|.. +.+.-. ...+++..+
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~ 87 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLS 87 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHH
Confidence 358999999999999887643 37899999999999999999863 2223331 111100 112222211
Q ss_pred HHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC---------CCcEEEEEeCChHHHh--
Q 044878 220 LESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA---------PGSRIIVTTRSMVVAL-- 288 (368)
Q Consensus 220 l~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~---------~gs~IivTtR~~~va~-- 288 (368)
+..... ............. ..-++++|+++..++..-..+...+.... -..++++++.++ ...
T Consensus 88 i~~~~~----~g~f~r~~~G~L~-~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~-LPE~g 161 (498)
T PRK13531 88 IQALKD----EGRYQRLTSGYLP-EAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE-LPEAD 161 (498)
T ss_pred Hhhhhh----cCchhhhcCCccc-cccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC-CcccC
Confidence 111100 0000000000000 11289999999887777777776663211 123566666542 221
Q ss_pred -----hcC-CCCceeCCCCChh-HHHHHHHHh
Q 044878 289 -----TMG-SGKNYELKLLSDD-DCWSVFVNH 313 (368)
Q Consensus 289 -----~~~-~~~~~~l~~L~~~-~~~~lf~~~ 313 (368)
.+. -.-.+.+.+++.+ +-.+++...
T Consensus 162 ~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 162 SSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 111 1125789999854 447777654
No 225
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0052 Score=60.02 Aligned_cols=26 Identities=31% Similarity=0.232 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...+++|+|++|+||||++.++....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999888754
No 226
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.86 E-value=0.001 Score=57.83 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+..+|+|.|++|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999876
No 227
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.86 E-value=0.00092 Score=52.85 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|.|.|++|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999887
No 228
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.85 E-value=0.01 Score=52.71 Aligned_cols=188 Identities=13% Similarity=0.115 Sum_probs=104.0
Q ss_pred eecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-----ccccccCeEEEEecCC---------
Q 044878 144 VYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-----LTEAFEPKAWVCVSDD--------- 209 (368)
Q Consensus 144 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-----~~~~F~~~~wv~vs~~--------- 209 (368)
+.++++....+...... ....-+.++|+.|.||-|.+..+.++. .+-.-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 45555666666655442 446678899999999999877766653 1223344555543322
Q ss_pred -C-----------CHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-Cee-EEEEEcCccCChhhHHHhhhhcCCCCCCc
Q 044878 210 -F-----------DVLRISKAILESITLSSCGLTDLNSVQLKLKEA-KKF-LIVLDDVWDKKYELWQALKSPFMAGAPGS 275 (368)
Q Consensus 210 -~-----------~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-kr~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 275 (368)
+ ..+-+.++|+........- .... +.| ++|+-.+.+.+.+.-..++..+..-...+
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi----------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI----------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch----------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 1 1223334444443322110 0001 455 56777775555555556666655444566
Q ss_pred EEEEEeCCh-HHHhhcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 044878 276 RIIVTTRSM-VVALTMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL 351 (368)
Q Consensus 276 ~IivTtR~~-~va~~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 351 (368)
|+|+.-.+. .+-..+.+. -.+.+...+++|-...+++.+-... ... | .+++.+|+++|+|.---...+--.+
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~-l~l-p--~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG-LQL-P--KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc-ccC-c--HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777643221 111111111 2578888999999888887763322 111 2 7889999999999655444444333
No 229
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.00063 Score=59.70 Aligned_cols=173 Identities=16% Similarity=0.134 Sum_probs=82.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCC-------CChHHHHHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGL-------TDLNSVQLKL 240 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~-------~~~~~l~~~l 240 (368)
+.+++.|+|+.|.|||||.+.+.--.+-.+-. ++|.... ....+...++..++...... ....++...+
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g--~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il 104 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG--CFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAIL 104 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC--CCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHHH
Confidence 45789999999999999999876532110000 1111110 00011222333332221111 1122233333
Q ss_pred Hhc-CeeEEEEEcCccC----Ch--hhHHHhhhhcCCCCCCcEEEEEeCChHHHhhcCCCC---ceeCCCCChh--HHHH
Q 044878 241 KEA-KKFLIVLDDVWDK----KY--ELWQALKSPFMAGAPGSRIIVTTRSMVVALTMGSGK---NYELKLLSDD--DCWS 308 (368)
Q Consensus 241 ~~~-kr~LlVlDdvw~~----~~--~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~~~---~~~l~~L~~~--~~~~ 308 (368)
... ++-|++||..... +. ..|..+ ..+.. ..|+.+|+||...++...+.... ..++.....+ +...
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~ 182 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLT 182 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEe
Confidence 222 7889999999431 11 122222 22322 34788999999877765443221 1222111111 1111
Q ss_pred HHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 044878 309 VFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSK 354 (368)
Q Consensus 309 lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 354 (368)
|.-+ +..... -...+-++++.+ |+|-.+.--|..+..+
T Consensus 183 -~~Y~-l~~G~~-----~~s~a~~~a~~~-g~p~~vi~~A~~~~~~ 220 (222)
T cd03285 183 -MLYK-VEKGAC-----DQSFGIHVAELA-NFPKEVIEMAKQKALE 220 (222)
T ss_pred -EEEE-EeeCCC-----CCcHHHHHHHHh-CcCHHHHHHHHHHHHh
Confidence 1111 111111 123456666665 9999998888776543
No 230
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.84 E-value=0.0068 Score=50.61 Aligned_cols=112 Identities=11% Similarity=-0.009 Sum_probs=56.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh--cccc--ccCeEE-EEecCCCC--HHHHHHHHHHHhccCCCCCCChH-----HH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK--LTEA--FEPKAW-VCVSDDFD--VLRISKAILESITLSSCGLTDLN-----SV 236 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~--F~~~~w-v~vs~~~~--~~~l~~~il~~l~~~~~~~~~~~-----~l 236 (368)
-.+++|+|+.|.|||||++.+.... .... ++..-. ..+.+... ...+...+.-. ....-+-. .+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv~l 102 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRLAF 102 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHHHH
Confidence 3579999999999999999998752 1111 111001 12233221 11233332210 11111111 12
Q ss_pred HHHHHhcCeeEEEEEcCccC-ChhhHHHhhhhcCCCCCCcEEEEEeCChHHH
Q 044878 237 QLKLKEAKKFLIVLDDVWDK-KYELWQALKSPFMAGAPGSRIIVTTRSMVVA 287 (368)
Q Consensus 237 ~~~l~~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~IivTtR~~~va 287 (368)
...+.. ++=++++|+--.. +......+...+... +..||++|.+....
T Consensus 103 aral~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 103 ARLLLH-KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHc-CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 222222 7788999997432 333344444444332 45788888887654
No 231
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.84 E-value=0.0011 Score=68.57 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=84.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-------CCCChHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-------GLTDLNSVQLKLK 241 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-------~~~~~~~l~~~l~ 241 (368)
..++.|+|+.|.|||||.+.+.-..... .+-++|....... -.++..+...++.... -...+..+...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMF--QSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHH--HhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 4789999999999999999987552000 0001111111000 0001111111111000 0011222233333
Q ss_pred hc-CeeEEEEEcCccC-ChhhHHHh----hhhcCCCCCCcEEEEEeCChHHHhhcCCCCceeCCCCChh-HHHHHHHHhh
Q 044878 242 EA-KKFLIVLDDVWDK-KYELWQAL----KSPFMAGAPGSRIIVTTRSMVVALTMGSGKNYELKLLSDD-DCWSVFVNHA 314 (368)
Q Consensus 242 ~~-kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~IivTtR~~~va~~~~~~~~~~l~~L~~~-~~~~lf~~~~ 314 (368)
.. ++-|++||..-.. ++.+...+ ...+. ..|+.+|+||...++.........+.-..+..+ +... | .+-
T Consensus 399 ~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p-~Yk 474 (771)
T TIGR01069 399 KTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-P-TYK 474 (771)
T ss_pred hcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-e-EEE
Confidence 22 7899999998653 33333333 22332 357899999999887654322211111111111 1100 1 011
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHH
Q 044878 315 FEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQRIDEWRAIL 364 (368)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~W~~vl 364 (368)
+..+.+. ...+-+|++++ |+|-.|.--|.-+... .....+.++
T Consensus 475 l~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li 517 (771)
T TIGR01069 475 LLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLI 517 (771)
T ss_pred ECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHH
Confidence 1111111 23456677666 8888888888777654 233444444
No 232
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.84 E-value=0.00096 Score=57.27 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=21.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
||+|.|++|+||||||+.+....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998874
No 233
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.025 Score=55.94 Aligned_cols=133 Identities=14% Similarity=0.059 Sum_probs=73.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
...+.+.++|++|.|||.||+++.+. ...+|-.+.+-. ++..-.+. ....+..+...-.+..+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~-~~~~fi~v~~~~-------------l~sk~vGe--sek~ir~~F~~A~~~~p~ 337 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE-SRSRFISVKGSE-------------LLSKWVGE--SEKNIRELFEKARKLAPS 337 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh-CCCeEEEeeCHH-------------Hhccccch--HHHHHHHHHHHHHcCCCc
Confidence 45568899999999999999999996 333442221111 11110000 011223333333333789
Q ss_pred EEEEEcCccC------C-h----hhHHHhhhhcCCCCC--CcEEEEEeCChHHHhh--c---CCCCceeCCCCChhHHHH
Q 044878 247 LIVLDDVWDK------K-Y----ELWQALKSPFMAGAP--GSRIIVTTRSMVVALT--M---GSGKNYELKLLSDDDCWS 308 (368)
Q Consensus 247 LlVlDdvw~~------~-~----~~~~~l~~~l~~~~~--gs~IivTtR~~~va~~--~---~~~~~~~l~~L~~~~~~~ 308 (368)
.|.+|++..- + . ....++...+..... +..||-||........ . .-...+.+.+-+.++..+
T Consensus 338 iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~ 417 (494)
T COG0464 338 IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLE 417 (494)
T ss_pred EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHH
Confidence 9999998431 0 0 123334444432223 3335555555443221 1 123467888888999999
Q ss_pred HHHHhhc
Q 044878 309 VFVNHAF 315 (368)
Q Consensus 309 lf~~~~~ 315 (368)
.|+.+.-
T Consensus 418 i~~~~~~ 424 (494)
T COG0464 418 IFKIHLR 424 (494)
T ss_pred HHHHHhc
Confidence 9998874
No 234
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.83 E-value=0.014 Score=55.32 Aligned_cols=101 Identities=11% Similarity=0.167 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-cc--ccccCeEEEEecCCCC--HHHHHHHHHHHhccCCCCCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LT--EAFEPKAWVCVSDDFD--VLRISKAILESITLSSCGLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~F~~~~wv~vs~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~ 242 (368)
..+++.++|+.|+||||.+.++.... .. .+-..+..++.. .+. ...-++...+.++.+-........+...+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 45799999999999999999888763 21 112234445444 333 2233555555555433333444555555544
Q ss_pred c-CeeEEEEEcCccCC--hhhHHHhhhhcC
Q 044878 243 A-KKFLIVLDDVWDKK--YELWQALKSPFM 269 (368)
Q Consensus 243 ~-kr~LlVlDdvw~~~--~~~~~~l~~~l~ 269 (368)
. +.=+|++|..-... ......+...+.
T Consensus 252 ~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 252 SKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred hCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 4 44577888874432 122344444444
No 235
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0082 Score=53.29 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=68.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC-----CCCHHHHHHHHHHHhccCCC----------CCCCh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD-----DFDVLRISKAILESITLSSC----------GLTDL 233 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~-----~~~~~~l~~~il~~l~~~~~----------~~~~~ 233 (368)
-.+++|||..|+|||||++.+..= ..... ..+++.-.+ .....+-..++++.++.... +....
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L-~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGL-EEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcC-cCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 468999999999999999999874 22222 222222111 22233445667777664431 11111
Q ss_pred HHHHHHHHhcCeeEEEEEcCccC-ChhhHHHhhhhcCC--CCCCcEEEEEeCChHHHhhcCC
Q 044878 234 NSVQLKLKEAKKFLIVLDDVWDK-KYELWQALKSPFMA--GAPGSRIIVTTRSMVVALTMGS 292 (368)
Q Consensus 234 ~~l~~~l~~~kr~LlVlDdvw~~-~~~~~~~l~~~l~~--~~~gs~IivTtR~~~va~~~~~ 292 (368)
.-.+.+....++=|+|.|..-+. +...-.++...|.+ ...|-..+..|.+-.++..++.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 11222222238999999997442 11122333333321 2346778888888888877654
No 236
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.82 E-value=0.036 Score=51.13 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=79.9
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
++.++=..+....++..|... +-|.|.|++|+||||+|+.+.... ... .+.|..+...+..+++-.-.
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~l-~~~---~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAARL-NWP---CVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHHH-CCC---eEEEEecCCCChhhcCCCce
Confidence 344444445556677666432 348899999999999999999873 221 23455555444333322210
Q ss_pred HHhccCCCCC-CChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcC--------C------CCCCcEEEEEeCChH
Q 044878 221 ESITLSSCGL-TDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFM--------A------GAPGSRIIVTTRSMV 285 (368)
Q Consensus 221 ~~l~~~~~~~-~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~--------~------~~~gs~IivTtR~~~ 285 (368)
-.+....... .....+.... + +.+.+++|.+....++....|...|. . ..++-++|.|.....
T Consensus 112 ~~l~~g~~~~~f~~GpL~~A~-~-~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g 189 (327)
T TIGR01650 112 IVLKDGKQITEFRDGILPWAL-Q-HNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIG 189 (327)
T ss_pred eeccCCcceeEEecCcchhHH-h-CCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCC
Confidence 0000000000 0000111111 1 66789999996555444444333221 1 113456666665432
Q ss_pred HHh--------------hcCCC-CceeCCCCChhHHHHHHHHhh
Q 044878 286 VAL--------------TMGSG-KNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 286 va~--------------~~~~~-~~~~l~~L~~~~~~~lf~~~~ 314 (368)
-.. .+.-. -.+.+..++.++=.+++....
T Consensus 190 ~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 190 LGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 100 00111 134688888877777776654
No 237
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.003 Score=61.64 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=59.6
Q ss_pred CceecccccHHHHHHHHhcCCCC------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPS------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.++-|.+....+|.+++..-... +...++=+.++|++|+|||.||+.+.++. .-. ++.++-+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vP-----f~~isAp------ 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVP-----FLSISAP------ 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCc-----eEeecch------
Confidence 35778888888888877542110 11345668899999999999999999983 222 2333321
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCcc
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWD 255 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~ 255 (368)
+|+..+.+.+ ...+.++...-...-++++++|++..
T Consensus 258 --eivSGvSGES--EkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 --EIVSGVSGES--EKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred --hhhcccCccc--HHHHHHHHHHHhccCCeEEEeecccc
Confidence 2233332221 12333444444444889999999953
No 238
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.81 E-value=0.0011 Score=57.44 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+...+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999865
No 239
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.80 E-value=0.0048 Score=54.06 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=20.2
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|+|.|+.|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 240
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.79 E-value=0.014 Score=52.77 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=68.1
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE---ecCCCCHHHHHHHHHHHhcc-
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC---VSDDFDVLRISKAILESITL- 225 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~---vs~~~~~~~l~~~il~~l~~- 225 (368)
..+.++..|... ....-++|+|+.|+|||||.+.+.... . .....+++. +.......+ +......
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~-~-~~~G~i~~~g~~v~~~d~~~e----i~~~~~~~ 165 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL-S-TGISQLGLRGKKVGIVDERSE----IAGCVNGV 165 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc-C-CCCceEEECCEEeecchhHHH----HHHHhccc
Confidence 344555555532 335678999999999999999998762 2 222233331 111001122 2222111
Q ss_pred CCC------C----CCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHh
Q 044878 226 SSC------G----LTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVAL 288 (368)
Q Consensus 226 ~~~------~----~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 288 (368)
... + ......+...+....+=++++|.+-. .+.+..+...+. .|..+|+||....+..
T Consensus 166 ~q~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 166 PQHDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 000 0 11123344444444888999999843 355666655552 5778999999876643
No 241
>PRK08233 hypothetical protein; Provisional
Probab=96.79 E-value=0.0011 Score=55.96 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=22.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|+|.|++|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999876
No 242
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0014 Score=53.26 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCe
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPK 201 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~ 201 (368)
..-|.|.|++|+|||||++.+.+..-...|..-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 456899999999999999999987422335533
No 243
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.78 E-value=0.0043 Score=51.62 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=57.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC--CCCHHHHHHHHHHHhccCCCCCCChHH-----HHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD--DFDVLRISKAILESITLSSCGLTDLNS-----VQLKLKE 242 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~--~~~~~~l~~~il~~l~~~~~~~~~~~~-----l~~~l~~ 242 (368)
.+++|+|+.|+|||||.+.+.... ......+++.-.. ..+..+..+ ..++.-. . -+..+ +...+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY--KPDSGEILVDGKEVSFASPRDARR---AGIAMVY-Q-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-e-cCHHHHHHHHHHHHHhc
Confidence 579999999999999999998752 2223334432111 111111111 1111100 0 11111 1222222
Q ss_pred cCeeEEEEEcCcc-CChhhHHHhhhhcCCC-CCCcEEEEEeCChHHHh
Q 044878 243 AKKFLIVLDDVWD-KKYELWQALKSPFMAG-APGSRIIVTTRSMVVAL 288 (368)
Q Consensus 243 ~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~ 288 (368)
++-++++|+.-+ .+......+...+... ..|..||++|.+.....
T Consensus 100 -~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 -NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred -CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 778999999843 2333444444444321 24668888998876443
No 244
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0071 Score=59.65 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=36.9
Q ss_pred CceecccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccc
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAF 198 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F 198 (368)
.++=|.++.+.+|.+.....-.. +...++=|..+|++|+|||++|+.+.+. ..-+|
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne-~~~nF 496 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE-AGMNF 496 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh-hcCCe
Confidence 44556777666666554321100 0034567889999999999999999998 44444
No 245
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.77 E-value=0.015 Score=51.52 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=35.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
+.-.++.|+|.+|+|||+|+.++.....+ +=..++|++..+. ..++.+.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC--HHHHHHH
Confidence 45678999999999999999998654222 2346788888664 3455554
No 246
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.76 E-value=0.0036 Score=57.74 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=50.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHH--
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLK-- 239 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~-- 239 (368)
+.-+++-|.|++|+||||||.+++.. ....-..++||+....++.. .+.+++.+.. ...+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~-~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE-AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 45578999999999999999998766 33344577899877766643 2333332210 11222333222
Q ss_pred -HHhc-CeeEEEEEcCc
Q 044878 240 -LKEA-KKFLIVLDDVW 254 (368)
Q Consensus 240 -l~~~-kr~LlVlDdvw 254 (368)
+.+. .--+||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 2222 56689999984
No 247
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.76 E-value=0.0093 Score=53.52 Aligned_cols=85 Identities=26% Similarity=0.290 Sum_probs=52.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHHHHHHHHhccCCC---------CCCCh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILESITLSSC---------GLTDL 233 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---------~~~~~ 233 (368)
.-.+.=|+|++|+|||.|+.++.-.. ... .=..++|++-...|+..++. +|++....+.. ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 34689999999999999998887553 221 12358899999999888875 45665432210 11233
Q ss_pred HHHHHHH-------HhcCeeEEEEEcC
Q 044878 234 NSVQLKL-------KEAKKFLIVLDDV 253 (368)
Q Consensus 234 ~~l~~~l-------~~~kr~LlVlDdv 253 (368)
+++...+ .+.+=-|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3332222 2225569999998
No 248
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.76 E-value=0.012 Score=55.32 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=60.3
Q ss_pred CcEEEEEEecCCcchHH-HHHHHHhhhccccccCeEEEEecC-CCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-C
Q 044878 168 NFRVIPLVGMGGIRKTA-LSQEVYNDKLTEAFEPKAWVCVSD-DFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA-K 244 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-k 244 (368)
+.+++.+|||.|+|||| ||+....-.....=..++.|+... .....+-++.-.+-++.+-....+..++...+... .
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 36899999999999998 555554432122223455665433 22444555556666666555556666666666665 3
Q ss_pred eeEEEEEcCccC--ChhhHHHhhhhcCC
Q 044878 245 KFLIVLDDVWDK--KYELWQALKSPFMA 270 (368)
Q Consensus 245 r~LlVlDdvw~~--~~~~~~~l~~~l~~ 270 (368)
.=+|.+|-+-.. +......+...+..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 346666766432 23445555555543
No 249
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.76 E-value=0.0061 Score=53.76 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999876
No 250
>PRK05973 replicative DNA helicase; Provisional
Probab=96.75 E-value=0.016 Score=51.20 Aligned_cols=144 Identities=14% Similarity=0.014 Sum_probs=75.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCC-----------CCCCChHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSS-----------CGLTDLNSV 236 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~-----------~~~~~~~~l 236 (368)
.-.++.|.|.+|+|||+|+.++...-.+. -..+++++.... ..++...+... +.+. .+....+.+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes--~~~i~~R~~s~-g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT--EQDVRDRLRAL-GADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC--HHHHHHHHHHc-CCChHHhccceEeecCCCCCHHHH
Confidence 34688899999999999999987663222 245666665553 44554443322 2211 111233444
Q ss_pred HHHHHhc-CeeEEEEEcCccCC----hhhHHH----hhhhcCCCCCCcEEEEEeCChHHHhhc-CCCCceeCCCCChhHH
Q 044878 237 QLKLKEA-KKFLIVLDDVWDKK----YELWQA----LKSPFMAGAPGSRIIVTTRSMVVALTM-GSGKNYELKLLSDDDC 306 (368)
Q Consensus 237 ~~~l~~~-kr~LlVlDdvw~~~----~~~~~~----l~~~l~~~~~gs~IivTtR~~~va~~~-~~~~~~~l~~L~~~~~ 306 (368)
...+... +.=++|+|.+.... ...... +.... ...|.-||+|+....-...- .......=-.++..--
T Consensus 139 i~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~A--k~~gitvIl~sQl~r~~e~~~~~~P~laDlR~~~~~d 216 (237)
T PRK05973 139 IARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFA--RERGLIIVFISQIDRSFDPSAKPLPDIRDVRLPNPLD 216 (237)
T ss_pred HHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHH--HhCCCeEEEEecCccccccCCCCCCChhhcCCCChhh
Confidence 4444443 45689999985321 111222 22222 24677888888754332111 1111111112233334
Q ss_pred HHHHHHhhcCC
Q 044878 307 WSVFVNHAFEG 317 (368)
Q Consensus 307 ~~lf~~~~~~~ 317 (368)
..||.+.+|-.
T Consensus 217 ~~~f~~~~~~~ 227 (237)
T PRK05973 217 LSLFDKACFLN 227 (237)
T ss_pred HHHhhhhheec
Confidence 67898888764
No 251
>PRK09354 recA recombinase A; Provisional
Probab=96.75 E-value=0.0044 Score=57.68 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=51.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHH-
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKL- 240 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l- 240 (368)
+.-+++-|.|++|+||||||.++... ....-..++||.....++.. .+++++.+.. .....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~-~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE-AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45679999999999999999998776 33344677899887776653 2334332210 112233332222
Q ss_pred --Hhc-CeeEEEEEcCc
Q 044878 241 --KEA-KKFLIVLDDVW 254 (368)
Q Consensus 241 --~~~-kr~LlVlDdvw 254 (368)
.+. ..-+||+|.|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 222 56689999985
No 252
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.75 E-value=0.015 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
++.++|++|+||||++..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998763
No 253
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0067 Score=61.78 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=84.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-----CeEEEEecCCCCHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-----PKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-----~~~wv~vs~~~~~~~l~ 216 (368)
..++||+++++++++.|..... +.+| ++|.+|+|||+++.-+....+...-+ ..++. .+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD----- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LD----- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ec-----
Confidence 4589999999999999987653 2233 57999999999887777663221111 11110 01
Q ss_pred HHHHHHhccCCCC---CCChHHHHHHHHhcCeeEEEEEcCccC---------ChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 217 KAILESITLSSCG---LTDLNSVQLKLKEAKKFLIVLDDVWDK---------KYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 217 ~~il~~l~~~~~~---~~~~~~l~~~l~~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
|..-+.+..-. ...+..+.+.+.+.++.+|.+|.+..- ..+.-+-++++|..+ .--.|=.||-+
T Consensus 234 --~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG-eL~~IGATT~~- 309 (786)
T COG0542 234 --LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG-ELRCIGATTLD- 309 (786)
T ss_pred --HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC-CeEEEEeccHH-
Confidence 11111111111 123444555555557899999998642 122233445555432 22234455543
Q ss_pred HHHhhcC-------CCCceeCCCCChhHHHHHHHHh
Q 044878 285 VVALTMG-------SGKNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 285 ~va~~~~-------~~~~~~l~~L~~~~~~~lf~~~ 313 (368)
+.-..+. -...+.+..-+.+++..+++-.
T Consensus 310 EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 310 EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 3322222 2357788888888888877543
No 254
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.73 E-value=0.0066 Score=51.36 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=61.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE---ecCCCCHHHHHH------HHHHHhccCCC-----CCCChH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC---VSDDFDVLRISK------AILESITLSSC-----GLTDLN 234 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~---vs~~~~~~~l~~------~il~~l~~~~~-----~~~~~~ 234 (368)
-.+++|+|+.|+|||||++.+.... ......+++. +.. .+...+.. ++++.++.... ..-+..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3589999999999999999998752 2223333332 211 12222111 13444433211 111111
Q ss_pred H-----HHHHHHhcCeeEEEEEcCcc-CChhhHHHhhhhcCCC-CC-CcEEEEEeCChHHHhh
Q 044878 235 S-----VQLKLKEAKKFLIVLDDVWD-KKYELWQALKSPFMAG-AP-GSRIIVTTRSMVVALT 289 (368)
Q Consensus 235 ~-----l~~~l~~~kr~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~-gs~IivTtR~~~va~~ 289 (368)
+ +...+.. .+-++++|+.-. .+....+.+...+... .. |..||++|.+......
T Consensus 102 ~~qrl~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 102 ERQRVLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1 1122222 888999999843 2333444454444322 22 6788999988765533
No 255
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.024 Score=55.65 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=88.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
+.=|.++|++|+|||-||++|.|. ..-+| ++|-.+ +++..--+++ .....++.++-+..-+++|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE-ag~NF-----isVKGP--------ELlNkYVGES--ErAVR~vFqRAR~saPCVI 608 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE-AGANF-----ISVKGP--------ELLNKYVGES--ERAVRQVFQRARASAPCVI 608 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh-ccCce-----EeecCH--------HHHHHHhhhH--HHHHHHHHHHhhcCCCeEE
Confidence 455789999999999999999998 45455 333221 1222211111 1123344444444589999
Q ss_pred EEEcCccCC-----hh------hHHHhhhhcCC--CCCCcEEEEEeCChHHHhh--cCCC---CceeCCCCChhHHHHHH
Q 044878 249 VLDDVWDKK-----YE------LWQALKSPFMA--GAPGSRIIVTTRSMVVALT--MGSG---KNYELKLLSDDDCWSVF 310 (368)
Q Consensus 249 VlDdvw~~~-----~~------~~~~l~~~l~~--~~~gs~IivTtR~~~va~~--~~~~---~~~~l~~L~~~~~~~lf 310 (368)
.||.+...- .. ..+++..-+.. .-.|--||-.|..+++-.. ...+ ....+..-+.+|-.+++
T Consensus 609 FFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~IL 688 (802)
T KOG0733|consen 609 FFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAIL 688 (802)
T ss_pred EecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHH
Confidence 999985421 11 23334333321 2245567777776665322 2222 45667777888888888
Q ss_pred HHhhcCCCC-CCCCccHHHHHHHHHHHcCCCh
Q 044878 311 VNHAFEGRD-AGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 311 ~~~~~~~~~-~~~~~~l~~~~~~I~~~c~GlP 341 (368)
+...-.... ....-++++++. ..+|.|.-
T Consensus 689 K~~tkn~k~pl~~dVdl~eia~--~~~c~gft 718 (802)
T KOG0733|consen 689 KTITKNTKPPLSSDVDLDEIAR--NTKCEGFT 718 (802)
T ss_pred HHHhccCCCCCCcccCHHHHhh--cccccCCc
Confidence 887643221 122346777765 35666654
No 256
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.71 E-value=0.012 Score=56.72 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+.+|.++|++|+||||++.++....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999998763
No 257
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.70 E-value=0.017 Score=51.25 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=70.5
Q ss_pred EEEEEecCCcchHHHHHHHHhhh-ccccc---------c-CeEEEEecCCC-CHHHHHHHHHHHhccCC-----------
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK-LTEAF---------E-PKAWVCVSDDF-DVLRISKAILESITLSS----------- 227 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~-~~~~F---------~-~~~wv~vs~~~-~~~~l~~~il~~l~~~~----------- 227 (368)
+..|+|++|+|||+||..+.-.. ....| . .+++++.-.+. .+.+=+..+...+....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 56789999999999999987653 21111 1 23344433322 12222333443332110
Q ss_pred -C-----------CCCChHHHHHHHHhcCeeEEEEEcCcc------CChhhHHHhhhhcCC--CCCCcEEEEEeCChHHH
Q 044878 228 -C-----------GLTDLNSVQLKLKEAKKFLIVLDDVWD------KKYELWQALKSPFMA--GAPGSRIIVTTRSMVVA 287 (368)
Q Consensus 228 -~-----------~~~~~~~l~~~l~~~kr~LlVlDdvw~------~~~~~~~~l~~~l~~--~~~gs~IivTtR~~~va 287 (368)
. ....++.+.+.+...+.-+||+|-+-. .+......+...+.. ...|+.||+++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 001122333334333777999997632 223344444443321 23477888887754221
Q ss_pred h--------h------c-CCCCceeCCCCChhHHHH
Q 044878 288 L--------T------M-GSGKNYELKLLSDDDCWS 308 (368)
Q Consensus 288 ~--------~------~-~~~~~~~l~~L~~~~~~~ 308 (368)
. . . ...-.+.+.+++.+++.+
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~ 198 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEK 198 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHh
Confidence 1 0 0 112367788888888776
No 258
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.70 E-value=0.01 Score=54.09 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+.+|+|.|+.|+||||||+.+..-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999877543
No 259
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0092 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|.|||||.+.+..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999875
No 260
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.70 E-value=0.0015 Score=52.77 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 261
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.69 E-value=0.026 Score=45.90 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=54.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE------ecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC------VSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA 243 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~------vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~ 243 (368)
.+++|+|+.|.|||||++.+.... ......+|+. .....+.- ....-.+...+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~~~~~i~~~~~lS~G----------------~~~rv~laral~~- 87 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL--EPDEGIVTWGSTVKIGYFEQLSGG----------------EKMRLALAKLLLE- 87 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC--CCCceEEEECCeEEEEEEccCCHH----------------HHHHHHHHHHHhc-
Confidence 589999999999999999998752 1112222221 11111100 0011112222322
Q ss_pred CeeEEEEEcCcc-CChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhh
Q 044878 244 KKFLIVLDDVWD-KKYELWQALKSPFMAGAPGSRIIVTTRSMVVALT 289 (368)
Q Consensus 244 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~ 289 (368)
++-++++|+.-. .+......+...+... +..||++|.+.+....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 777899999743 2334444555545432 3478888888765543
No 262
>PRK06547 hypothetical protein; Provisional
Probab=96.69 E-value=0.0027 Score=53.27 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....+|.|.|++|+||||||+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998763
No 263
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.68 E-value=0.0082 Score=53.85 Aligned_cols=111 Identities=15% Similarity=0.212 Sum_probs=66.6
Q ss_pred ceecccccHHHHHHHHhc---CCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cc---ccccCeEEE---EecCCCCH
Q 044878 143 AVYGRDEDKDRMLDMVLK---NDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LT---EAFEPKAWV---CVSDDFDV 212 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~---~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~---~~F~~~~wv---~vs~~~~~ 212 (368)
.++|..-..+.++..+.+ ++. +.++-+++.+|.+|+||...++.+.++. -. ..|= .-++ +.+..-.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V-~~fvat~hFP~~~~i 159 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV-HHFVATLHFPHASKI 159 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH-HHhhhhccCCChHHH
Confidence 466766666666665543 111 1688999999999999999999998874 11 1110 0011 11111112
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcC
Q 044878 213 LRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFM 269 (368)
Q Consensus 213 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~ 269 (368)
+.-..++.+ .++..+..++|-|+|+|++....+.-.+.|.+.+.
T Consensus 160 e~Yk~eL~~-------------~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 160 EDYKEELKN-------------RVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred HHHHHHHHH-------------HHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 222222222 22333444599999999998877778888888775
No 264
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.67 E-value=0.018 Score=45.22 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=35.9
Q ss_pred ceecccccHHHHHHHHhcCC-CCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 143 AVYGRDEDKDRMLDMVLKND-PSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+++|..-..+.+++.+..-- ...+.++-|++.+|++|+|||.+++.+.+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57787666666655553310 0112788999999999999999988888764
No 265
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.67 E-value=0.0075 Score=50.87 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=54.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE------ecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC------VSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKE 242 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~------vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~ 242 (368)
-.+++|+|+.|+|||||++.+..-. ......+++. +.+... +. .+....-.+...+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~q~~~-----------LS---gGq~qrv~laral~~ 88 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL--IPNGDNDEWDGITPVYKPQYID-----------LS---GGELQRVAIAAALLR 88 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC--CCCCcEEEECCEEEEEEcccCC-----------CC---HHHHHHHHHHHHHhc
Confidence 3589999999999999999988642 1112222221 122111 00 000111112222222
Q ss_pred cCeeEEEEEcCccC-ChhhHHHhhhhcCCC-CC-CcEEEEEeCChHHHhh
Q 044878 243 AKKFLIVLDDVWDK-KYELWQALKSPFMAG-AP-GSRIIVTTRSMVVALT 289 (368)
Q Consensus 243 ~kr~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~-gs~IivTtR~~~va~~ 289 (368)
++-+++||+.-+. +......+...+... .. +..||++|.+......
T Consensus 89 -~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 89 -NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred -CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 7789999997432 333333344333321 12 3678888888766543
No 266
>PRK06762 hypothetical protein; Provisional
Probab=96.64 E-value=0.0017 Score=54.13 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+.+|.|.|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 267
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.63 E-value=0.02 Score=53.50 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-cc----ccccCeEEEEecCCCCHHHHHHHHHHHhccC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LT----EAFEPKAWVCVSDDFDVLRISKAILESITLS 226 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 226 (368)
..-.+.-|.|++|+|||+|+.+++-.. .. ..-..++||+....|++.++.+ +++.++.+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 345788899999999999998886432 21 1124679999999999888654 55665543
No 268
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.62 E-value=0.0028 Score=51.31 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=28.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD 208 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~ 208 (368)
++|.|+|+.|+|||||++.+.+...+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 479999999999999999999986445566555665544
No 269
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.62 E-value=0.02 Score=50.78 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=35.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
+.-.++.|.|++|+|||+||.++..... ..-..++|++... +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 4568899999999999999988765422 3345778888765 44455554
No 270
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.62 E-value=0.0016 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999886
No 271
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.02 Score=53.84 Aligned_cols=88 Identities=15% Similarity=0.143 Sum_probs=51.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc--
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILESITLSSCGLTDLNSVQLKLKEA-- 243 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-- 243 (368)
...+++.++|+.|+||||++..+........ ..+.+|+.... ....+-++...+.++.......+...+...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 3568999999999999999999886632222 24555554322 1234445555555543322233444554444432
Q ss_pred --CeeEEEEEcCcc
Q 044878 244 --KKFLIVLDDVWD 255 (368)
Q Consensus 244 --kr~LlVlDdvw~ 255 (368)
..=+|++|-.-.
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 235778888744
No 272
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.004 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999874
No 273
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.60 E-value=0.016 Score=53.58 Aligned_cols=57 Identities=18% Similarity=0.094 Sum_probs=39.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHHHHHHHHhc
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILESIT 224 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~ 224 (368)
+.-.++.|.|++|+|||||+..++... ... .-..++|++....++..++ .++.+.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 456899999999999999999887542 211 1135689998887777764 34445443
No 274
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.60 E-value=0.011 Score=54.53 Aligned_cols=58 Identities=21% Similarity=0.204 Sum_probs=41.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-cc----ccccCeEEEEecCCCCHHHHHHHHHHHhcc
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LT----EAFEPKAWVCVSDDFDVLRISKAILESITL 225 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 225 (368)
..-+++-|+|++|+|||+|+.++.-.. .. ..=..++||+....|+..++.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 445789999999999999998876432 21 1123678999999888888654 5666544
No 275
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.60 E-value=0.0055 Score=57.03 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=24.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..+..++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999999984
No 276
>PRK05439 pantothenate kinase; Provisional
Probab=96.58 E-value=0.016 Score=53.16 Aligned_cols=26 Identities=12% Similarity=0.040 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+-+|+|.|.+|+||||+|+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988764
No 277
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.56 E-value=0.01 Score=59.02 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=81.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|....+.++.+.+..-.. .-.-|.|+|..|+||++||+.++... ...-.+.+.+.++.-. ...+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s-~r~~~pfv~inca~~~--~~~~e~--- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRS-PRGKKPFLALNCASIP--DDVVES--- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhC-CCCCCCeEEeccccCC--HHHHHH---
Confidence 4689999888888877654221 12237799999999999999987652 1111222344443322 222222
Q ss_pred HhccCCCC-CCCh-HHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCChHHHh
Q 044878 222 SITLSSCG-LTDL-NSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSMVVAL 288 (368)
Q Consensus 222 ~l~~~~~~-~~~~-~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~~va~ 288 (368)
.+.+...+ .... ......+.....=.|+||++...+......+...+..+. ...|||.||...-...
T Consensus 274 elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l 353 (520)
T PRK10820 274 ELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 353 (520)
T ss_pred HhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHH
Confidence 12111110 0000 000011222244568999998877766677777665421 1237888776532110
Q ss_pred h----cC-------CCCceeCCCCCh
Q 044878 289 T----MG-------SGKNYELKLLSD 303 (368)
Q Consensus 289 ~----~~-------~~~~~~l~~L~~ 303 (368)
. +. ....+++.||.+
T Consensus 354 ~~~g~f~~dL~~rL~~~~i~lPpLre 379 (520)
T PRK10820 354 VQKGEFREDLYYRLNVLTLNLPPLRD 379 (520)
T ss_pred HHcCCccHHHHhhcCeeEEeCCCccc
Confidence 0 00 124678899965
No 278
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.55 E-value=0.002 Score=54.75 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+..+|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999865
No 279
>PRK14974 cell division protein FtsY; Provisional
Probab=96.53 E-value=0.025 Score=52.66 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC--HHHHHHHHHHHhccCCC---CCCChHHH-HHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD--VLRISKAILESITLSSC---GLTDLNSV-QLKL 240 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~il~~l~~~~~---~~~~~~~l-~~~l 240 (368)
.++.++.++|++|+||||++.++........+ .++.+. .+.+. ..+-++.....++.... ...+...+ ...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 35789999999999999988888865322223 233333 23332 23334555555553321 11222221 2222
Q ss_pred H---hcCeeEEEEEcCccC--ChhhHHHhhhh
Q 044878 241 K---EAKKFLIVLDDVWDK--KYELWQALKSP 267 (368)
Q Consensus 241 ~---~~kr~LlVlDdvw~~--~~~~~~~l~~~ 267 (368)
. ....=+|++|-.-.. +...++.+...
T Consensus 216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred HHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 2 212238888988543 23344555443
No 280
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.53 E-value=0.0036 Score=50.96 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=32.6
Q ss_pred EEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhccC
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITLS 226 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~ 226 (368)
+|.|.|++|+||||+|+.+.++. .. | .+.-.++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68899999999999999999884 21 1 13346788888877653
No 281
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.53 E-value=0.02 Score=53.41 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=55.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHHHHHHHHhccCCC---------CCCC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILESITLSSC---------GLTD 232 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---------~~~~ 232 (368)
..-.++-|.|++|+|||+|+..++-.. ... .-..++|++....|+..++ .++++.++.+.. ...+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCC
Confidence 445788899999999999998877542 111 1126899999999988876 455666544321 1122
Q ss_pred hHHHHHHH-------HhcCeeEEEEEcCc
Q 044878 233 LNSVQLKL-------KEAKKFLIVLDDVW 254 (368)
Q Consensus 233 ~~~l~~~l-------~~~kr~LlVlDdvw 254 (368)
.+.+...+ ...+--|||+|.+-
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 22222222 22255689999984
No 282
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.022 Score=58.26 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..++.++|+.|+||||.+.++....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999998887653
No 283
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.53 E-value=0.013 Score=51.69 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=32.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
.-.++.|.|++|+||||||.++.....++. ..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 346899999999999999866655432222 3456666333 445665555
No 284
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.51 E-value=0.018 Score=56.05 Aligned_cols=83 Identities=24% Similarity=0.226 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 242 (368)
.-.++.|.|.+|+|||||+.++.... ...-..++|++..+. ...+.. -++.++.... ...+++.+.+.+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~-a~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL-AAAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 34689999999999999999998763 222235677776543 333322 2444443211 23457777777766
Q ss_pred cCeeEEEEEcCc
Q 044878 243 AKKFLIVLDDVW 254 (368)
Q Consensus 243 ~kr~LlVlDdvw 254 (368)
.+.-+||+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 666789999984
No 285
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.51 E-value=0.007 Score=57.44 Aligned_cols=52 Identities=17% Similarity=0.274 Sum_probs=37.7
Q ss_pred CceecccccHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKN--------DPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..++|.++.++.+.-.+... +-.....++-|.++|++|+|||+||+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45888888888887666542 00000234678899999999999999998873
No 286
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.51 E-value=0.003 Score=58.34 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=44.2
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++|.++.++++++.+..........-+++.++||.|.||||||..+-+-
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999997755433366799999999999999999998876
No 287
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.49 E-value=0.028 Score=55.06 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=85.3
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|......++...+..-. .....+.|.|..|+||+++|+.+.... .......+-+.+..- ..+.+...+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~-~~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHS-PRANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhC-CCCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 458888877777777665432 223456799999999999999998763 212222233333322 223333322
Q ss_pred HhccCCCCCCC-hHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCChHHH--
Q 044878 222 SITLSSCGLTD-LNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSMVVA-- 287 (368)
Q Consensus 222 ~l~~~~~~~~~-~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~~va-- 287 (368)
++........ .......+.....-.|+||++...+......+...+..+. .+.+||+||...-..
T Consensus 206 -fg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~ 284 (463)
T TIGR01818 206 -FGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALV 284 (463)
T ss_pred -cCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHH
Confidence 1111100000 0000011112244568999998877777777776665331 245888888654211
Q ss_pred ----------hhcCCCCceeCCCCC--hhHHHHHH
Q 044878 288 ----------LTMGSGKNYELKLLS--DDDCWSVF 310 (368)
Q Consensus 288 ----------~~~~~~~~~~l~~L~--~~~~~~lf 310 (368)
..+ ....+++.||. .+|--.|+
T Consensus 285 ~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~ 318 (463)
T TIGR01818 285 RQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLA 318 (463)
T ss_pred HcCCcHHHHHHHh-CcceecCCCcccchhhHHHHH
Confidence 111 12367888987 45554443
No 288
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.49 E-value=0.024 Score=55.15 Aligned_cols=98 Identities=14% Similarity=0.074 Sum_probs=59.7
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC- 228 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~- 228 (368)
-+..|-.+|...= ..-.++.|.|.+|+|||||+.++...... .-..++|++..+. ..++.. -+..++....
T Consensus 79 Gi~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~ 150 (454)
T TIGR00416 79 GFGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEES--LQQIKM-RAIRLGLPEPN 150 (454)
T ss_pred CcHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcCC--HHHHHH-HHHHcCCChHH
Confidence 3444555553322 34578999999999999999998776322 2235678775543 333322 1233332211
Q ss_pred ----CCCChHHHHHHHHhcCeeEEEEEcCcc
Q 044878 229 ----GLTDLNSVQLKLKEAKKFLIVLDDVWD 255 (368)
Q Consensus 229 ----~~~~~~~l~~~l~~~kr~LlVlDdvw~ 255 (368)
...+.+.+...+.+.+.-++|+|.+..
T Consensus 151 l~~~~e~~~~~I~~~i~~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 151 LYVLSETNWEQICANIEEENPQACVIDSIQT 181 (454)
T ss_pred eEEcCCCCHHHHHHHHHhcCCcEEEEecchh
Confidence 234677777777776677899999853
No 289
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.49 E-value=0.0097 Score=58.91 Aligned_cols=133 Identities=13% Similarity=0.082 Sum_probs=72.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|....+.++.+.+..-. ....-|.|.|..|+||+++|+.+++...+.. .+.+-|.+..-. ..++..
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~-~pfv~inC~~l~--e~lles--- 281 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRD-FPFVAINCGAIA--ESLLEA--- 281 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCC-CCEEEeccccCC--hhHHHH---
Confidence 358999988888888775422 2224578999999999999999997631111 122233332211 222222
Q ss_pred HhccCCCCC-CChH--HHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCCh
Q 044878 222 SITLSSCGL-TDLN--SVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSM 284 (368)
Q Consensus 222 ~l~~~~~~~-~~~~--~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 284 (368)
.+.+...+. .... .-...+.....=.|+||++.+........|...+.... ...|||.||...
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCA 358 (526)
T ss_pred HhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCC
Confidence 222211110 0000 00011111245569999998877666677777664321 123788887543
No 290
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.012 Score=53.04 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=59.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH-h---ccCCC-CCCChHHHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES-I---TLSSC-GLTDLNSVQLKLK 241 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~-l---~~~~~-~~~~~~~l~~~l~ 241 (368)
+.-+++=|.|+.|+||||||.+++-. .+..-..++|++--..+++..+. .+... + ....+ .......+...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~-aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN-AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH-hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 56689999999999999999998876 45555588999999989887753 33333 2 11111 2233344444444
Q ss_pred hc-C--eeEEEEEcCcc
Q 044878 242 EA-K--KFLIVLDDVWD 255 (368)
Q Consensus 242 ~~-k--r~LlVlDdvw~ 255 (368)
.. . --|+|+|.+-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 44 3 57999999843
No 291
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.48 E-value=0.014 Score=58.23 Aligned_cols=88 Identities=16% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
+.-+++.+.|++|.||||||.-+.++. .| .++=|..|+.-+...+-..|...+.-.... +.+ .++.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa---GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l--~ad--------srP~ 389 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA---GY-SVVEINASDERTAPMVKEKIENAVQNHSVL--DAD--------SRPV 389 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc---Cc-eEEEecccccccHHHHHHHHHHHHhhcccc--ccC--------CCcc
Confidence 556899999999999999999999873 11 234456677666665555554444322110 000 1777
Q ss_pred EEEEEcCccCChhhHHHhhhhc
Q 044878 247 LIVLDDVWDKKYELWQALKSPF 268 (368)
Q Consensus 247 LlVlDdvw~~~~~~~~~l~~~l 268 (368)
-||+|.+.-......+.|.+.+
T Consensus 390 CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHH
Confidence 8999999654434455555544
No 292
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.48 E-value=0.011 Score=51.49 Aligned_cols=50 Identities=20% Similarity=0.306 Sum_probs=35.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILES 222 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~ 222 (368)
.-++|.|.+|+|||+|++.+.+.. . -+..+++.+++.. ...++.+++...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~-~--~d~~V~~~iGer~~Ev~~~~~~~~~~ 66 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ-D--ADVVVYALIGERGREVTEFIEELKGE 66 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC-T--TTEEEEEEESECHHHHHHHHHHHHHT
T ss_pred CEEEEEcCcccccchhhHHHHhcc-c--ccceeeeeccccchhHHHHHHHHhhc
Confidence 357899999999999999999873 2 2233777787654 455666655443
No 293
>PHA00729 NTP-binding motif containing protein
Probab=96.48 E-value=0.0042 Score=54.10 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457889999999999999999887
No 294
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.48 E-value=0.0044 Score=53.55 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|.|||||.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999843
No 295
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.0026 Score=54.78 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++.+|+|.|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999987
No 296
>PRK03839 putative kinase; Provisional
Probab=96.46 E-value=0.0023 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999987
No 297
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.45 E-value=0.0024 Score=66.21 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=85.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-c--cc------------cccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCC
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-L--TE------------AFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTD 232 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~--~~------------~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~ 232 (368)
+.+++.|+|+.+.||||+.+.+.-.. . .. .|+ .++..++...++..-+..+. ..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS----------~~ 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFS----------GH 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHH----------HH
Confidence 45788999999999999999986432 1 01 111 12222222211111111100 11
Q ss_pred hHHHHHHHHhc-CeeEEEEEcCccC-ChhhHHHh----hhhcCCCCCCcEEEEEeCChHHHhhcCCCCceeCCCCC-hhH
Q 044878 233 LNSVQLKLKEA-KKFLIVLDDVWDK-KYELWQAL----KSPFMAGAPGSRIIVTTRSMVVALTMGSGKNYELKLLS-DDD 305 (368)
Q Consensus 233 ~~~l~~~l~~~-kr~LlVlDdvw~~-~~~~~~~l----~~~l~~~~~gs~IivTtR~~~va~~~~~~~~~~l~~L~-~~~ 305 (368)
+..+...+... .+-|++||..-.. ++.+-..+ ...+. ..|+.+|+||...+++........+.-..+. +.+
T Consensus 395 m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~ 472 (782)
T PRK00409 395 MTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEE 472 (782)
T ss_pred HHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecC
Confidence 12222222222 7789999999643 22333333 22232 3578999999998887654432211100000 111
Q ss_pred HHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHHHH
Q 044878 306 CWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQRIDEWRAIL 364 (368)
Q Consensus 306 ~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~W~~vl 364 (368)
... | .+-+....+. ...|-+|++.+ |+|-.|.--|.-+-.. +....+.++
T Consensus 473 ~l~-~-~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li 522 (782)
T PRK00409 473 TLR-P-TYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELI 522 (782)
T ss_pred cCc-E-EEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHH
Confidence 111 0 1111111111 23456677766 8888888888777654 233444444
No 298
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.44 E-value=0.011 Score=49.74 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999864
No 299
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.02 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 300
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.43 E-value=0.0088 Score=49.26 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=60.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEe---cCCCCHHHHHHHHHHHhccC----CC--CCCChHH-----
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCV---SDDFDVLRISKAILESITLS----SC--GLTDLNS----- 235 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~v---s~~~~~~~l~~~il~~l~~~----~~--~~~~~~~----- 235 (368)
..|-|++..|.||||+|....-......+ .+.++.+ ........+++.+ ..+... .. ...+...
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHH
Confidence 46788888899999999888766433333 2333332 2233444444433 111000 00 0011111
Q ss_pred ------HHHHHHhcCeeEEEEEcCccC---ChhhHHHhhhhcCCCCCCcEEEEEeCChH
Q 044878 236 ------VQLKLKEAKKFLIVLDDVWDK---KYELWQALKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 236 ------l~~~l~~~kr~LlVlDdvw~~---~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 285 (368)
..+.+....-=|||||++-.. ..-..+.+...+.....+..+|+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111111113349999998321 22345666676766666779999999854
No 301
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.42 E-value=0.048 Score=52.32 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+.+|.++|++|+||||++.++...
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999888754
No 302
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.077 Score=48.21 Aligned_cols=121 Identities=9% Similarity=-0.016 Sum_probs=66.2
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc-cccCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE-AFEPKAWVCVSDDFDVLRISKAILESITLSS 227 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~ 227 (368)
..++|...+..+. -..-..++|+.|+||+++|..+.... ... ...|+.|- -...+|... +....
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~-~~~HPD~~~--------i~p~~ 70 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKIS-QKIHPDIHE--------FSPQG 70 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHh-cCCCCCEEE--------EecCC
Confidence 3455666665532 23567789999999999999988764 221 11110000 000000000 00000
Q ss_pred ----CCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 228 ----CGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 228 ----~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
-..+....+++.+... +.=++|+|++...+.+.++.+...+..-..++.+|++|.+.
T Consensus 71 ~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 71 KGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 0011122233333222 44588999998888889999998887666677766666653
No 303
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.40 E-value=0.0021 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|+|.|++|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999765
No 304
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.016 Score=55.92 Aligned_cols=96 Identities=18% Similarity=0.285 Sum_probs=57.8
Q ss_pred ceeccc---ccHHHHHHHHhcCCC----CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 143 AVYGRD---EDKDRMLDMVLKNDP----SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 143 ~~~Gr~---~~~~~l~~~L~~~~~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
++-|-| .|+++++++|.++.. .+ .=++=|.++|++|.|||-||++|.-.. . .-+|.+.+..|+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGG-KLPKGVLLvGPPGTGKTlLARAvAGEA-~----VPFF~~sGSEFdE--- 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGG-KLPKGVLLVGPPGTGKTLLARAVAGEA-G----VPFFYASGSEFDE--- 375 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccC-cCCCceEEeCCCCCchhHHHHHhhccc-C----CCeEeccccchhh---
Confidence 455665 466677788876431 11 234668899999999999999999873 1 1223333344431
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCcc
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWD 255 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~ 255 (368)
++--. +......+...-+..-+++|.+|.+..
T Consensus 376 ---m~VGv-----GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 ---MFVGV-----GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ---hhhcc-----cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 21111 122334455555555889999999853
No 305
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.37 E-value=0.012 Score=57.98 Aligned_cols=84 Identities=14% Similarity=0.116 Sum_probs=51.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCC---------------CCC-
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSS---------------CGL- 230 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~---------------~~~- 230 (368)
..-.++.|.|++|+|||||+.++.... ..+-..+++++..+ +..++.+.+ +.++.+. +..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~-~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA-CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 445789999999999999999988763 22334567776655 344555543 3443221 111
Q ss_pred ---CChHHHHHHHHhcCeeEEEEEcCc
Q 044878 231 ---TDLNSVQLKLKEAKKFLIVLDDVW 254 (368)
Q Consensus 231 ---~~~~~l~~~l~~~kr~LlVlDdvw 254 (368)
..++.+.+.+.+.+.-++|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 123344444444466789999984
No 306
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.37 E-value=0.008 Score=53.11 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=36.1
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHH
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~ 214 (368)
+..++++.+.... .+..+|+|.|++|+|||||...+.... .+.+-=.++-|.-|.+++=-.
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA 75 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA 75 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc
Confidence 4556676666543 456899999999999999999988774 222222334444455554333
No 307
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.37 E-value=0.0085 Score=53.96 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=39.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
+.-+++.|.|.+|+|||+++.++... ...+...++||+..+. ..++.+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~-~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE-GAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH-HHhcCCcEEEEEecCC--HHHHHHHH
Confidence 45689999999999999999998887 3445889999998874 33444444
No 308
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.026 Score=55.02 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..|++++|+.|+||||++.++....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999998764
No 309
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.36 E-value=0.048 Score=49.28 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=34.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
-.++.|.|++|+|||||+.++.......+=..++|++... +..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHH
Confidence 3578899999999999999987764233234677887655 33445544443
No 310
>PRK15115 response regulator GlrR; Provisional
Probab=96.35 E-value=0.031 Score=54.41 Aligned_cols=134 Identities=18% Similarity=0.112 Sum_probs=70.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|....+.++.+....-. ..-..+.|.|.+|+|||+||+.+++.. ... ...++.+....-....+...+-
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~s-~r~--~~~f~~i~c~~~~~~~~~~~lf 206 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNAS-PRA--SKPFIAINCGALPEQLLESELF 206 (444)
T ss_pred hcccccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHhc-CCC--CCCeEEEeCCCCCHHHHHHHhc
Confidence 357787777777666544322 122346799999999999999998863 111 1223333322112222222211
Q ss_pred -HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCCh
Q 044878 222 -SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSM 284 (368)
Q Consensus 222 -~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 284 (368)
...+...+... .....+.....-.|+||++...+......+...+..+. ...+||.||...
T Consensus 207 g~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 207 GHARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred CCCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 11110000000 00000111144579999998877767777777664321 134888888753
No 311
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.35 E-value=0.0024 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEecCCcchHHHHHHHHhhh
Q 044878 172 IPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|.|+|++|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988873
No 312
>PRK04040 adenylate kinase; Provisional
Probab=96.34 E-value=0.0035 Score=53.48 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999887
No 313
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.31 E-value=0.0052 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..+|-|.|.+|+||||||+.+.+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 314
>PTZ00035 Rad51 protein; Provisional
Probab=96.31 E-value=0.041 Score=51.43 Aligned_cols=58 Identities=21% Similarity=0.139 Sum_probs=39.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-cc----ccccCeEEEEecCCCCHHHHHHHHHHHhcc
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LT----EAFEPKAWVCVSDDFDVLRISKAILESITL 225 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 225 (368)
..-.++.|+|++|+|||||+..+.-.. .. ..-..++|++....|+..++ .++.+.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 456899999999999999998887542 11 01235669988777777764 444555443
No 315
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.31 E-value=0.014 Score=57.83 Aligned_cols=135 Identities=14% Similarity=0.106 Sum_probs=73.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRIS 216 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~ 216 (368)
..++|....+.++.+.+..-. ....-|.|.|..|+||+++|+.+++.. ... .....-||.+.-..-...++
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~ll 294 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLL 294 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhH
Confidence 358999988888888765422 223457899999999999999999862 111 11222344433221112322
Q ss_pred HHHHHHhccCCCC-CCChH--HHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeC
Q 044878 217 KAILESITLSSCG-LTDLN--SVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTR 282 (368)
Q Consensus 217 ~~il~~l~~~~~~-~~~~~--~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR 282 (368)
... +.+...+ ..... .-...+.....=.|+||++.+........|...+.... ...|||.+|.
T Consensus 295 ese---LFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~ 371 (538)
T PRK15424 295 EAE---LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 371 (538)
T ss_pred HHH---hcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecC
Confidence 222 2211110 00000 00001111245569999998877767777777664321 1237888775
Q ss_pred C
Q 044878 283 S 283 (368)
Q Consensus 283 ~ 283 (368)
.
T Consensus 372 ~ 372 (538)
T PRK15424 372 C 372 (538)
T ss_pred C
Confidence 4
No 316
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.30 E-value=0.0057 Score=48.79 Aligned_cols=41 Identities=24% Similarity=0.120 Sum_probs=29.3
Q ss_pred ccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 149 EDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
++..++-+.|...- ..-.+|.+.|.-|+|||||++.+.+..
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555554321 234589999999999999999999874
No 317
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.29 E-value=0.0099 Score=60.77 Aligned_cols=131 Identities=21% Similarity=0.131 Sum_probs=72.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
+.++|....+.++.+.+..-.. ...-|.|+|..|+||+++|+.+++.. ...-...+.|.++.- ....+..+++-
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~s-~r~~~pfv~vnc~~~-~~~~~~~elfg 398 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNES-ERAAGPYIAVNCQLY-PDEALAEEFLG 398 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHhC-CccCCCeEEEECCCC-ChHHHHHHhcC
Confidence 4688999888888877665332 12237799999999999999999863 111112233333322 12222223332
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC---C--------CcEEEEEeCC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA---P--------GSRIIVTTRS 283 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~---~--------gs~IivTtR~ 283 (368)
........ .. ...+.....=.|+||++..........|...+..+. . ..+||.||..
T Consensus 399 ~~~~~~~~-~~----~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 399 SDRTDSEN-GR----LSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred CCCcCccC-CC----CCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 22111000 00 001111144569999998877777777777664321 1 3467777664
No 318
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.1 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
|=-.++||+|.||||+..++++.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh
Confidence 55678999999999999999986
No 319
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.28 E-value=0.037 Score=46.56 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=32.4
Q ss_pred CeeEEEEEcCc-cCC-hhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhcC
Q 044878 244 KKFLIVLDDVW-DKK-YELWQALKSPFMAGAPGSRIIVTTRSMVVALTMG 291 (368)
Q Consensus 244 kr~LlVlDdvw-~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~ 291 (368)
++-+|+-|.-- +.+ ...|+-+.-+-.-+..|+.||++|.+.++...+.
T Consensus 155 ~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 155 QPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred CCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 77788888642 112 2456655444334567999999999999877664
No 320
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.28 E-value=0.0058 Score=51.98 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=55.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC---CC----CChHHHHHHHHhc
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC---GL----TDLNSVQLKLKEA 243 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---~~----~~~~~l~~~l~~~ 243 (368)
++.|+|+.|.||||+.+.+.-.....+-.+.+|..-.. -.....++..++.... +. ....++...+...
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~----~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~ 76 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAE----LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNA 76 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheE----ecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhC
Confidence 46799999999999999998432111111111111000 0000011111111100 00 1122233333322
Q ss_pred -CeeEEEEEcCccC-ChhhHH----HhhhhcCCCCCCcEEEEEeCChHHHhhcC
Q 044878 244 -KKFLIVLDDVWDK-KYELWQ----ALKSPFMAGAPGSRIIVTTRSMVVALTMG 291 (368)
Q Consensus 244 -kr~LlVlDdvw~~-~~~~~~----~l~~~l~~~~~gs~IivTtR~~~va~~~~ 291 (368)
++-|+++|..-.. +...-. .+...+.. ..|+.+|++|...++...+.
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 7889999998543 221111 22222222 23778999999988776543
No 321
>PRK06217 hypothetical protein; Validated
Probab=96.28 E-value=0.0079 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.0
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.|.|.+|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999874
No 322
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.28 E-value=0.004 Score=52.24 Aligned_cols=89 Identities=15% Similarity=0.091 Sum_probs=50.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhcc-ccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLT-EAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFL 247 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~L 247 (368)
..++.+.|+.|+|||.||+.+.+.. . ......+-+..+.-....+ ...++..+....+. . ......-+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l-~~~~~~~~~~~d~s~~~~~~~-~~~~~~~l~~~~~~--~-------v~~~~~gV 71 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL-FVGSERPLIRIDMSEYSEGDD-VESSVSKLLGSPPG--Y-------VGAEEGGV 71 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH-T-SSCCEEEEEEGGGHCSHHH-CSCHCHHHHHHTTC--H-------HHHHHHTE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh-ccCCccchHHHhhhcccccch-HHhhhhhhhhcccc--e-------eeccchhh
Confidence 4678899999999999999998873 3 3333444455444322000 00011111110000 0 00002239
Q ss_pred EEEEcCccCCh-----------hhHHHhhhhc
Q 044878 248 IVLDDVWDKKY-----------ELWQALKSPF 268 (368)
Q Consensus 248 lVlDdvw~~~~-----------~~~~~l~~~l 268 (368)
|+||++..... ..|+.+...|
T Consensus 72 VllDEidKa~~~~~~~~~v~~~~V~~~LL~~l 103 (171)
T PF07724_consen 72 VLLDEIDKAHPSNSGGADVSGEGVQNSLLQLL 103 (171)
T ss_dssp EEEETGGGCSHTTTTCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 99999987777 7788877766
No 323
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.28 E-value=0.0034 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.++.|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999988763
No 324
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.27 E-value=0.01 Score=56.32 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=38.0
Q ss_pred CCceecccccHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLKN--------DPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+..++|.++.++.+...+... .........-+.++|++|+||||||+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345889998888888777541 1000012467899999999999999999887
No 325
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.27 E-value=0.027 Score=53.99 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++++|+.|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999888764
No 326
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.27 E-value=0.0037 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=22.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...|.|+|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 327
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.25 E-value=0.017 Score=52.04 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=53.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC--CCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD--FDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
-.++.|.|+.|+||||+++.+... +.. .... -+++.++ +.... ..++........+.........+..+=
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~-i~~-~~~~-iitiEdp~E~~~~~-----~~q~~v~~~~~~~~~~~l~~~lR~~PD 151 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE-LNT-PEKN-IITVEDPVEYQIPG-----INQVQVNEKAGLTFARGLRAILRQDPD 151 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh-hCC-CCCe-EEEECCCceecCCC-----ceEEEeCCcCCcCHHHHHHHHhccCCC
Confidence 357999999999999999988765 222 1111 1222222 11110 011111111223455555555555777
Q ss_pred EEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHH
Q 044878 247 LIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVV 286 (368)
Q Consensus 247 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v 286 (368)
.|+++++.+. +....+..+. ..|-.++-|....++
T Consensus 152 ~i~vgEiR~~--e~a~~~~~aa---~tGh~v~tTlHa~~~ 186 (264)
T cd01129 152 IIMVGEIRDA--ETAEIAVQAA---LTGHLVLSTLHTNDA 186 (264)
T ss_pred EEEeccCCCH--HHHHHHHHHH---HcCCcEEEEeccCCH
Confidence 8999999543 3333222222 234345555554443
No 328
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.25 E-value=0.044 Score=52.47 Aligned_cols=52 Identities=29% Similarity=0.300 Sum_probs=36.3
Q ss_pred CCceecccccHHHHHHHHhc---------CCCCC---CCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLK---------NDPSD---AANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~---------~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+..++|.++.++.+...+.. ..... ......+.++|++|+|||+||+.+...
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~ 139 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARI 139 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHh
Confidence 55689999888888765521 00000 011357889999999999999999876
No 329
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.23 E-value=0.005 Score=54.21 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-|.|+|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999876
No 330
>PRK00625 shikimate kinase; Provisional
Probab=96.22 E-value=0.0036 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.++|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999876
No 331
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.0062 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=22.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.++.|.||+|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999999998
No 332
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.22 E-value=0.0043 Score=51.91 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....+++|+|+.|+|||||++.+....
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 356799999999999999999999764
No 333
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.21 E-value=0.0057 Score=51.92 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=28.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC 205 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~ 205 (368)
.+++.|+|+.|+|||||++.+... ....|...++-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~-~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE-FPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH-STTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh-cccccccceeec
Confidence 368899999999999999999987 455665444433
No 334
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.21 E-value=0.0032 Score=53.35 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.2
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999876
No 335
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.21 E-value=0.06 Score=54.97 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=66.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
+-+.++|++|+||||+|+.+.+.. .-.| +.++.. ++. ...... .......+........+++|+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~-~~~f-----~~is~~----~~~----~~~~g~--~~~~~~~~f~~a~~~~P~Iif 249 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA-KVPF-----FTISGS----DFV----EMFVGV--GASRVRDMFEQAKKAAPCIIF 249 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc-CCCE-----EEEehH----HhH----Hhhhcc--cHHHHHHHHHHHHhcCCcEEE
Confidence 348899999999999999998873 2222 222211 111 011000 111222233333333778999
Q ss_pred EEcCccCC----------hhhHHHhhhh----cCC--CCCCcEEEEEeCChHHHhh--cC---CCCceeCCCCChhHHHH
Q 044878 250 LDDVWDKK----------YELWQALKSP----FMA--GAPGSRIIVTTRSMVVALT--MG---SGKNYELKLLSDDDCWS 308 (368)
Q Consensus 250 lDdvw~~~----------~~~~~~l~~~----l~~--~~~gs~IivTtR~~~va~~--~~---~~~~~~l~~L~~~~~~~ 308 (368)
||+++... ...+...... +.. ...+.-+|.||...+.... .. -...+.+...+.++-.+
T Consensus 250 IDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~ 329 (644)
T PRK10733 250 IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 329 (644)
T ss_pred ehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHH
Confidence 99985421 0122222221 211 1234456667776653221 11 23467777777777777
Q ss_pred HHHHhh
Q 044878 309 VFVNHA 314 (368)
Q Consensus 309 lf~~~~ 314 (368)
+|..+.
T Consensus 330 Il~~~~ 335 (644)
T PRK10733 330 ILKVHM 335 (644)
T ss_pred HHHHHh
Confidence 777665
No 336
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.20 E-value=0.0035 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+++.|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999885
No 337
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.20 E-value=0.0088 Score=53.71 Aligned_cols=64 Identities=19% Similarity=0.115 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHH
Q 044878 151 KDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
-.+|+..+.... .+..+|+|.|.+|+|||||.-.+.... -+.+-=.++-|.-|++++--.++-+
T Consensus 37 a~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 345666665433 677899999999999999999988775 3444345556666776655454433
No 338
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.18 E-value=0.0097 Score=53.88 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 152 DRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+++.+... -+-+.++|+.|+|||++++.....
T Consensus 23 ~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhcc
Confidence 3456666642 245689999999999999998865
No 339
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.18 E-value=0.0049 Score=51.86 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+...+|.|+|++|+||||+|+.+....
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999999874
No 340
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.17 E-value=0.0034 Score=53.32 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999886
No 341
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.17 E-value=0.0047 Score=53.53 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++.|+|++|+|||||++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 56788999999999999999999754
No 342
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.17 E-value=0.43 Score=46.19 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=35.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESI 223 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l 223 (368)
-.++.|-|.+|+|||++|..+..+. .... ..++|++ -..+..++...++...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fS--lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFS--LEMSAEQLGERLLASK 246 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEE--CCCCHHHHHHHHHHHH
Confidence 3578899999999999999998664 3332 3455654 3346666666666543
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.019 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+.|.+.|++|+||||+|+++.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 35778999999999999999876
No 344
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0045 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.386 Sum_probs=22.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|+|-||-|+||||||+.+.++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 468999999999999999999987
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.15 E-value=0.014 Score=54.91 Aligned_cols=109 Identities=10% Similarity=0.136 Sum_probs=58.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH---HHHHHhccCCCCCCChHHHHHHHHhcCe
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK---AILESITLSSCGLTDLNSVQLKLKEAKK 245 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~---~il~~l~~~~~~~~~~~~l~~~l~~~kr 245 (368)
-..+.|.|+.|+||||+++.+... +..+...+++. +.++... ... .+..+... .....+............+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~-i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~ev-g~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY-INKNAAGHIIT-IEDPIEY--VHRNKRSLINQREV-GLDTLSFANALRAALREDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh-hCcCCCCEEEE-EcCChhh--hccCccceEEcccc-CCCCcCHHHHHHHhhccCC
Confidence 367999999999999999998876 44444444443 2222110 000 00000000 1112344444444444477
Q ss_pred eEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHH
Q 044878 246 FLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVA 287 (368)
Q Consensus 246 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va 287 (368)
=.|++|.+-+ .+.+...... ...|-.++.|+...++.
T Consensus 197 d~i~vgEird--~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 197 DVILIGEMRD--LETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CEEEEeCCCC--HHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 8899999943 3455442222 23455577776654443
No 346
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.14 E-value=0.0072 Score=52.94 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=61.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-------CCCChHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-------GLTDLNSVQLKLK 241 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-------~~~~~~~l~~~l~ 241 (368)
-+++.|.|+.|.||||+.+.+.-..+..+-.+..|..-.. -.++..|+..++..+. -..++.++...+.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~ 106 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILS 106 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHHH
Confidence 4678999999999999999987632111111222221000 0001111111111111 0123344444555
Q ss_pred hc-CeeEEEEEcCccCCh----hh-HHHhhhhcCCCCCCcEEEEEeCChHHHhhc
Q 044878 242 EA-KKFLIVLDDVWDKKY----EL-WQALKSPFMAGAPGSRIIVTTRSMVVALTM 290 (368)
Q Consensus 242 ~~-kr~LlVlDdvw~~~~----~~-~~~l~~~l~~~~~gs~IivTtR~~~va~~~ 290 (368)
.. ++-|++||....... .. -..+...+... .++.+|++|...+++...
T Consensus 107 ~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 107 NCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred hCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 44 899999999844221 11 11233333322 578999999999887654
No 347
>PRK05636 replicative DNA helicase; Provisional
Probab=96.14 E-value=0.7 Score=45.72 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=35.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESI 223 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l 223 (368)
-.++.|-|.+|+||||||..+.... .+... .+++ +|-..+..++...++...
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~-~v~~--fSlEMs~~ql~~R~ls~~ 317 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNK-ASVI--FSLEMSKSEIVMRLLSAE 317 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEE--EEeeCCHHHHHHHHHHHh
Confidence 4578889999999999999888764 33332 2222 355556667777666554
No 348
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.13 E-value=0.0058 Score=54.00 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=38.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE---------ecCCCCHHHH--HHHHHHHhccCC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC---------VSDDFDVLRI--SKAILESITLSS 227 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~---------vs~~~~~~~l--~~~il~~l~~~~ 227 (368)
..+.+|.++||+|+||||..|.++.+. ...+.+..-|. ..-+.++++. .++.+++.....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 557788899999999999999999873 33333222222 2223355544 356777765543
No 349
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.12 E-value=0.022 Score=54.65 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCceecccccHHHHHHHHhc-------CCC---CCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLK-------NDP---SDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~-------~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+..++|.+..++.+...+.. ... .......-+.++|++|+|||+||+.+...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 44689999888877655421 000 00012356889999999999999999876
No 350
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.12 E-value=0.016 Score=56.11 Aligned_cols=84 Identities=17% Similarity=0.195 Sum_probs=53.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILESITLSS-------CGLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~------- 234 (368)
.-++|.|.+|+|||||+.++.+...+.+-+.++++-+++.. .+.++..++...-.... .+.....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 45899999999999999998887533456777888777654 44556565554322111 1111111
Q ss_pred --HHHHHHHh--cCeeEEEEEcC
Q 044878 235 --SVQLKLKE--AKKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~--~kr~LlVlDdv 253 (368)
.+.+.++. .+.+||++||+
T Consensus 224 a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccc
Confidence 22333332 28999999999
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=96.12 E-value=0.024 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+.+|.++|++|+||||.+.++...
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999977776553
No 352
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.11 E-value=0.0059 Score=48.05 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=18.8
Q ss_pred EEEEecCCcchHHHHHHHHhhhcccccc
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFE 199 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~ 199 (368)
|.|+|.+|+||||+|+.+... ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~-~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS-LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH-TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH-cCCcee
Confidence 578999999999999999987 555564
No 353
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.11 E-value=0.019 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998764
No 354
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.11 E-value=0.035 Score=55.01 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=64.4
Q ss_pred CcEEEEEEecCCcchHH-HHHHHHhhhccccccCeEEEEecCCC--CHHHHHHHHHHHhccCCC----------C-----
Q 044878 168 NFRVIPLVGMGGIRKTA-LSQEVYNDKLTEAFEPKAWVCVSDDF--DVLRISKAILESITLSSC----------G----- 229 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~~~~----------~----- 229 (368)
...||.|+|..|+|||| |+|.+|.+- |...--|-+.++- ....+.+.+.+.++..-. +
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~edG----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYEDG----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhcc----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 34689999999999999 888888762 2211234444433 444566666666643210 0
Q ss_pred -----CCChHHHHHHHHhc---CeeEEEEEcCccCCh---hhHHHhhhhcCCCCCCcEEEEEeCChHHH
Q 044878 230 -----LTDLNSVQLKLKEA---KKFLIVLDDVWDKKY---ELWQALKSPFMAGAPGSRIIVTTRSMVVA 287 (368)
Q Consensus 230 -----~~~~~~l~~~l~~~---kr~LlVlDdvw~~~~---~~~~~l~~~l~~~~~gs~IivTtR~~~va 287 (368)
..+--.+.+.|... |=-.||+|...+.+. -.+.-++..+.. -..-|+||||-..+..
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlKliVtSATm~a~ 513 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLKLIVTSATMDAQ 513 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccceEEEeeccccHH
Confidence 01122233344443 444789999976532 122233333332 2467999998876543
No 355
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.10 E-value=0.056 Score=53.06 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=71.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|....+.++...+..-. .....+.|+|.+|+|||++|+.++... ...-...+-+.++.- +...+-..+.-
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s-~~~~~~~i~i~c~~~-~~~~~~~~lfg 211 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHS-PRAKAPFIALNMAAI-PKDLIESELFG 211 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcC-CCCCCCeEeeeCCCC-CHHHHHHHhcC
Confidence 468999888888877765432 223457799999999999999998863 111112233333332 22222122211
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCCh
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSM 284 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 284 (368)
...+...+..... ...+.....-.|+||++..........+...+..+. ...|||+||...
T Consensus 212 ~~~g~~~~~~~~~--~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 283 (469)
T PRK10923 212 HEKGAFTGANTIR--QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQN 283 (469)
T ss_pred CCCCCCCCCCcCC--CCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCC
Confidence 1111000000000 000111133457889998777666777777664321 123899888653
No 356
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.10 E-value=0.0082 Score=51.76 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=20.0
Q ss_pred EEEEEEecCCcchHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVY 190 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~ 190 (368)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999988
No 357
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.10 E-value=0.0041 Score=50.43 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|.|++|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999986
No 358
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.10 E-value=0.004 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 359
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.09 E-value=0.018 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=18.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..|.|.|.+|+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 368899999999999999998864
No 360
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.08 E-value=0.0042 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
++.+.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999999876
No 361
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.08 E-value=0.0048 Score=51.95 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999876
No 362
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.08 E-value=0.014 Score=51.31 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=50.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccC---------------CCC--
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLS---------------SCG-- 229 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~---------------~~~-- 229 (368)
+.-.++.|.|++|+|||+|+.++.....++.=..++||+...+. .++.+.+- +++.+ ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 34578999999999999999887654322213467788876543 44444432 32211 001
Q ss_pred ---CCChHHHHHHHHhc----CeeEEEEEcC
Q 044878 230 ---LTDLNSVQLKLKEA----KKFLIVLDDV 253 (368)
Q Consensus 230 ---~~~~~~l~~~l~~~----kr~LlVlDdv 253 (368)
..+...+...+.+. +...+|+|.+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24556665555543 6689999997
No 363
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.07 E-value=0.0051 Score=53.14 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+|+|+|+.|+|||||++.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999876
No 364
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.06 E-value=0.082 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.4
Q ss_pred EEEEecCCcchHHHHHHHHhhh
Q 044878 172 IPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|.++|..|+||||++..+....
T Consensus 3 IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 6789999999999999998653
No 365
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.0063 Score=52.37 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
++..+|.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55689999999999999999999886
No 366
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.19 Score=44.18 Aligned_cols=156 Identities=14% Similarity=0.208 Sum_probs=83.4
Q ss_pred ceec-ccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 143 AVYG-RDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 143 ~~~G-r~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
+++| .+..+++|.+.+.-+-.. +..+++-+.++|++|.|||-||+.|+++ ..+-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh------t~c~firvsgs----- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH------TDCTFIRVSGS----- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh------cceEEEEechH-----
Confidence 3444 466666666655322100 0134566889999999999999999987 23456677763
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC-----------ChhhHHHh---hhhcC--CCCCCcEEE
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK-----------KYELWQAL---KSPFM--AGAPGSRII 278 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~-----------~~~~~~~l---~~~l~--~~~~gs~Ii 278 (368)
++.....+. +..-..++.-.-+++-+-+|..|.+.+- +.+.-..+ ...+. ...+.-+||
T Consensus 216 ---elvqk~ige--gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvi 290 (404)
T KOG0728|consen 216 ---ELVQKYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVI 290 (404)
T ss_pred ---HHHHHHhhh--hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEE
Confidence 222222111 0111223333344456777888887431 11111122 22222 123456888
Q ss_pred EEeCChHHHhh--cCCC---CceeCCCCChhHHHHHHHHhh
Q 044878 279 VTTRSMVVALT--MGSG---KNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 279 vTtR~~~va~~--~~~~---~~~~l~~L~~~~~~~lf~~~~ 314 (368)
+.|..-++... ..++ ..++..|-+++.-.++++-+.
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 88876665432 2222 457777776666666665543
No 367
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.04 E-value=0.032 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+.++.++|++|+||||.|.++...
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34689999999999999998777654
No 368
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.02 Score=55.46 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+.+-+++|+|++|.|||||.+.+....
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 556788899999999999999887764
No 369
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.02 E-value=0.022 Score=54.65 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=48.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC-HHHHHHHHHHHhccCC-------CCCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD-VLRISKAILESITLSS-------CGLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~-------~~~~~~~------- 234 (368)
..++|+|..|+|||||++.+.... ..+.++.+-+++... +.++..+++..-.... .+.....
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~ 239 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCET 239 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHH
Confidence 568999999999999999988652 224555666776553 3445555443321111 1111111
Q ss_pred --HHHHHHHhc-CeeEEEEEcC
Q 044878 235 --SVQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~~-kr~LlVlDdv 253 (368)
.+.+.++.. +++||++||+
T Consensus 240 A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 240 ATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHcCCCEEEEEcCh
Confidence 122233322 9999999998
No 370
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.02 E-value=0.01 Score=48.99 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=30.4
Q ss_pred cccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 148 DEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.+++|.+.|. + +++.++|..|+|||||...+...
T Consensus 23 ~~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 366788888884 3 68899999999999999999886
No 371
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.02 E-value=0.011 Score=59.80 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=50.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|.++.++.|...+... +.+.++|++|+||||+|+.+.+.....+|+..+|..-+. .+...+++.+..
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np~-~~~~~~~~~v~~ 101 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNPE-DPNNPKIRTVPA 101 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCCC-cchHHHHHHHHH
Confidence 46888888888877766532 358899999999999999998764334567778866533 344555555553
Q ss_pred H
Q 044878 222 S 222 (368)
Q Consensus 222 ~ 222 (368)
.
T Consensus 102 ~ 102 (637)
T PRK13765 102 G 102 (637)
T ss_pred h
Confidence 3
No 372
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.01 E-value=0.011 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.|+|.|-||+||||+|..+....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 58999999999999999976665
No 373
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.99 E-value=0.021 Score=52.65 Aligned_cols=83 Identities=17% Similarity=0.108 Sum_probs=48.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCC-------CCC-CChHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSS-------CGL-TDLNSVQL 238 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~-------~~~-~~~~~l~~ 238 (368)
+.-+++-|.|+.|+||||||.++... .+..-..++||.....++... ++.++.+. ++. ...-.+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~-~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE-AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH-HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh-hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 34579999999999999999999877 344445788999888776543 33443321 111 11112334
Q ss_pred HHHhc-CeeEEEEEcCcc
Q 044878 239 KLKEA-KKFLIVLDDVWD 255 (368)
Q Consensus 239 ~l~~~-kr~LlVlDdvw~ 255 (368)
.+.+. .--++|+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 44443 455899999843
No 374
>PRK04328 hypothetical protein; Provisional
Probab=95.98 E-value=0.04 Score=49.28 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD 209 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~ 209 (368)
+.-.++.|.|++|+|||+|+.++..... ..-...+|++....
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEeeCC
Confidence 3457899999999999999998765532 23456788887664
No 375
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.98 E-value=0.048 Score=49.05 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=30.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD 208 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~ 208 (368)
+.-.++.|.|++|+||||||.++.....+ .=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecC
Confidence 34578999999999999999998665322 234677888764
No 376
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.97 E-value=0.026 Score=50.75 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=52.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh-c--cccccCeEEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCCh-----
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK-L--TEAFEPKAWVCVSDDF-DVLRISKAILESITLSS-------CGLTDL----- 233 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~-~--~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~----- 233 (368)
.-++|.|..|+|||+|+..+.++. . +.+-+.++++-+++.. ...++..++...-.... .+....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 357899999999999999988763 1 1234678888888765 45566666655421111 011111
Q ss_pred ----HHHHHHHHhc--CeeEEEEEcC
Q 044878 234 ----NSVQLKLKEA--KKFLIVLDDV 253 (368)
Q Consensus 234 ----~~l~~~l~~~--kr~LlVlDdv 253 (368)
-.+.+.++.. +++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 1223333332 8999999999
No 377
>PHA02774 E1; Provisional
Probab=95.97 E-value=0.03 Score=55.17 Aligned_cols=38 Identities=8% Similarity=0.004 Sum_probs=27.8
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-...|..+|... ++...+.|+|++|+|||.+|..+.+-
T Consensus 420 fl~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~ 457 (613)
T PHA02774 420 FLTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKF 457 (613)
T ss_pred HHHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 334455555322 44568999999999999999999886
No 378
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.96 E-value=0.06 Score=47.72 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=32.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
-.++.|.|.+|+|||+++..+..+....+=..++|++... +..++...+
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~ 61 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRL 61 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHH
Confidence 4688999999999999999987764333233567776544 333444443
No 379
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.95 E-value=0.0056 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999775
No 380
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.0058 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|..|+|||||++.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5799999999999999999863
No 381
>PTZ00494 tuzin-like protein; Provisional
Probab=95.95 E-value=1.3 Score=42.69 Aligned_cols=162 Identities=11% Similarity=0.126 Sum_probs=98.6
Q ss_pred CCCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 140 GEPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 140 ~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
.+..++.|+.+-..+.+.|...+. ..++++.+.|.-|.||++|.+.....+ --..++|.|...- +-++.+
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE----~~paV~VDVRg~E---DtLrsV 438 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVE----GVALVHVDVGGTE---DTLRSV 438 (664)
T ss_pred ccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHc----CCCeEEEEecCCc---chHHHH
Confidence 367899999999988888887665 568999999999999999998877653 2245667776543 457888
Q ss_pred HHHhccCCCCC--CChHHHHHHHHhc------CeeEEEEEcCccCCh-hhHHHhhhhcCCCCCCcEEEEEeCChHHHhhc
Q 044878 220 LESITLSSCGL--TDLNSVQLKLKEA------KKFLIVLDDVWDKKY-ELWQALKSPFMAGAPGSRIIVTTRSMVVALTM 290 (368)
Q Consensus 220 l~~l~~~~~~~--~~~~~l~~~l~~~------kr~LlVlDdvw~~~~-~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~ 290 (368)
...++.+..+. +-++.+.+..... +.-+||+-=-.-.+. ..+.+. ..|.+.-.-|.|++---.+.+....
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchhh
Confidence 88888765432 2233333333222 444555543211111 112222 2233444567787765444332211
Q ss_pred CC---CCceeCCCCChhHHHHHHHH
Q 044878 291 GS---GKNYELKLLSDDDCWSVFVN 312 (368)
Q Consensus 291 ~~---~~~~~l~~L~~~~~~~lf~~ 312 (368)
.. ...|.+.+++..++.++-.+
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH 542 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEH 542 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhc
Confidence 11 14678888888888776444
No 382
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.94 E-value=0.0062 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEecCCcchHHHHHHHHhhh
Q 044878 172 IPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6799999999999999998764
No 383
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.94 E-value=0.0052 Score=49.52 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
+.|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999876
No 384
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.94 E-value=0.0068 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.7
Q ss_pred cEEEEEEecCCcchHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVY 190 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~ 190 (368)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999876
No 385
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.93 E-value=0.066 Score=48.28 Aligned_cols=99 Identities=14% Similarity=0.179 Sum_probs=49.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHHhccCCCCCCChHHHHHHH---Hhc-
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILESITLSSCGLTDLNSVQLKL---KEA- 243 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~~~~~~~~~l~~~l---~~~- 243 (368)
..+++++|++|+||||++..+.... ...=..+.+++..... ....-++...+.++.......+...+...+ .+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3689999999999999999887653 1111234455443221 122222233333332211223333333333 322
Q ss_pred CeeEEEEEcCccC--ChhhHHHhhhhc
Q 044878 244 KKFLIVLDDVWDK--KYELWQALKSPF 268 (368)
Q Consensus 244 kr~LlVlDdvw~~--~~~~~~~l~~~l 268 (368)
+.=++++|..-.. +....+.+...+
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~ 180 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETM 180 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHH
Confidence 3457888887543 223445554444
No 386
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.92 E-value=0.0084 Score=50.10 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=18.8
Q ss_pred EEEEecCCcchHHHHHHHHhhh
Q 044878 172 IPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998763
No 387
>PRK13949 shikimate kinase; Provisional
Probab=95.92 E-value=0.0061 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-|.|+|++|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999987
No 388
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.0061 Score=53.40 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=20.1
Q ss_pred cEEEEEEecCCcchHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVY 190 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~ 190 (368)
-.+++|+|++|+|||||.+.+.
T Consensus 29 GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999996
No 389
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.90 E-value=0.0073 Score=51.41 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=22.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999876
No 390
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.89 E-value=0.0077 Score=52.23 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+++++|+++|+.|+|||||..++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999999876
No 391
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.021 Score=47.06 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=58.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC--CHHHHHHHHHHHhcc---CCCCCCChHHHHHHHHhcC
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF--DVLRISKAILESITL---SSCGLTDLNSVQLKLKEAK 244 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~il~~l~~---~~~~~~~~~~l~~~l~~~k 244 (368)
.+++|+|..|.|||||++.+.... ......+++...... .... ....+.. -+.+....-.+...+.. .
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~qlS~G~~~r~~l~~~l~~-~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQLSGGQRQRVALARALLL-N 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccCCHHH----HHhceEEEeeCCHHHHHHHHHHHHHhc-C
Confidence 589999999999999999998752 223344443221100 1111 1111111 00011111112222222 7
Q ss_pred eeEEEEEcCccC-ChhhHHHhhhhcCCC-CCCcEEEEEeCChHHHhhc
Q 044878 245 KFLIVLDDVWDK-KYELWQALKSPFMAG-APGSRIIVTTRSMVVALTM 290 (368)
Q Consensus 245 r~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~IivTtR~~~va~~~ 290 (368)
+-++++|+.-.. +......+...+... ..+..+|++|.........
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 789999998432 223333444333311 1256789999887766543
No 392
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.87 E-value=0.025 Score=54.52 Aligned_cols=84 Identities=13% Similarity=0.219 Sum_probs=53.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILESITLSS-------CGLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~------- 234 (368)
.-++|.|.+|+|||+|+.++.....+.+-+.++++-+++.. ...++.+++...-.... .+.....
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~ 218 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT 218 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence 45899999999999999998877422334678888887765 34556666554321111 1111111
Q ss_pred --HHHHHHHh-c-CeeEEEEEcC
Q 044878 235 --SVQLKLKE-A-KKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~-~-kr~LlVlDdv 253 (368)
.+.+.++. . +++||++||+
T Consensus 219 a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecCh
Confidence 23334443 2 9999999999
No 393
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.099 Score=45.36 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=33.2
Q ss_pred CeeEEEEEcCccC-ChhhHHHhhhhcC-CCCCCcEEEEEeCChHHHhhcCCCCce
Q 044878 244 KKFLIVLDDVWDK-KYELWQALKSPFM-AGAPGSRIIVTTRSMVVALTMGSGKNY 296 (368)
Q Consensus 244 kr~LlVlDdvw~~-~~~~~~~l~~~l~-~~~~gs~IivTtR~~~va~~~~~~~~~ 296 (368)
++=|.|||...+- +.+....+...+. -...|+.+|+.|..+.+.....++.+|
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 7889999998553 2222332222222 123577889999999998887655444
No 394
>PRK13947 shikimate kinase; Provisional
Probab=95.86 E-value=0.0066 Score=50.77 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999987
No 395
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.83 E-value=0.021 Score=49.90 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=33.8
Q ss_pred EEEEEecCCcchHHHHHHHHhhhc------cccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKL------TEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~------~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
+..|+|++|.||||++..+..... ...-...+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999987777666531 134455666666666677777777766
No 396
>PRK14530 adenylate kinase; Provisional
Probab=95.83 E-value=0.0069 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 397
>PRK14527 adenylate kinase; Provisional
Probab=95.82 E-value=0.0084 Score=51.28 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....+|.|+|++|+||||+|+.+.+..
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998763
No 398
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.81 E-value=0.024 Score=48.82 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 345678999999999999999988764
No 399
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.81 E-value=0.026 Score=55.58 Aligned_cols=41 Identities=22% Similarity=0.056 Sum_probs=28.6
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEE-EEecCCC
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAW-VCVSDDF 210 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~w-v~vs~~~ 210 (368)
.-..|+|++|+|||||++.+.+.....+-++.++ +-|.+..
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERp 458 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERP 458 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCch
Confidence 4578999999999999999998742334444443 3455544
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.81 E-value=0.0073 Score=49.42 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=19.5
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|.|+|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999876
No 401
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.80 E-value=1.2 Score=43.38 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=33.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
-.++.|.|.+|+|||+++..+..+. .... ..++|++.. .+..++...++..
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g-~~vl~~SlE--m~~~~i~~R~~~~ 246 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEG-KPVAFFSLE--MSAEQLAMRMLSS 246 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CeEEEEeCc--CCHHHHHHHHHHH
Confidence 4688899999999999999988764 3222 345566543 3455555555443
No 402
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.78 E-value=0.0099 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|++|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999874
No 403
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.77 E-value=0.026 Score=52.76 Aligned_cols=109 Identities=20% Similarity=0.212 Sum_probs=64.6
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
.++|.++.+..+...+..+. -+.+.|++|+|||+||+.+... .. -...+|.+.......+++-...-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~-l~---~~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA-LG---LPFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH-hC---CCeEEEecCCCCCHHHhcCchhHh
Confidence 48898888888777776543 3779999999999999999987 33 233566666666655544332222
Q ss_pred hcc---CCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhc
Q 044878 223 ITL---SSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPF 268 (368)
Q Consensus 223 l~~---~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l 268 (368)
... ......+ .. +-..-+.++.+|.++...+..-..+...+
T Consensus 93 ~~~~~~~~~~~~~-gp----l~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 93 ALLLEPGEFRFVP-GP----LFAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred hhhccCCeEEEec-CC----cccccceEEEEeccccCCHHHHHHHHHHH
Confidence 111 0000000 00 00001149999999887665555555544
No 404
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.76 E-value=0.09 Score=43.95 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=47.0
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCC---CCChHHHHHHHHhc-CeeE
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCG---LTDLNSVQLKLKEA-KKFL 247 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~---~~~~~~l~~~l~~~-kr~L 247 (368)
+.|.|.+|+|||++|.++... ....++++.-...++.+ ..+.|.......... .+....+.+.+.+. +.-.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCE
Confidence 678999999999999988754 22466777777766543 334433332222211 23334555555443 3347
Q ss_pred EEEEcC
Q 044878 248 IVLDDV 253 (368)
Q Consensus 248 lVlDdv 253 (368)
+++|.+
T Consensus 77 VLIDcl 82 (169)
T cd00544 77 VLIDCL 82 (169)
T ss_pred EEEEcH
Confidence 999997
No 405
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.76 E-value=0.0069 Score=49.96 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEEecCCcchHHHHHHHH
Q 044878 171 VIPLVGMGGIRKTALSQEVY 190 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~ 190 (368)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 406
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.74 E-value=0.0064 Score=50.45 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|.|+|++|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999886
No 407
>PRK08149 ATP synthase SpaL; Validated
Probab=95.72 E-value=0.034 Score=53.30 Aligned_cols=81 Identities=11% Similarity=0.213 Sum_probs=47.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-CCHHHHHHHHHHHhccCC-------CCCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILESITLSS-------CGLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~-------~~~~~~~------- 234 (368)
..++|+|..|+|||||++.+.... .-+.++...+... -++.++..+.+....... .+.....
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~---~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~ 228 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS---EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALV 228 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC---CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHH
Confidence 578999999999999999988752 1233333444443 345566666655432211 1111111
Q ss_pred --HHHHHHHhc-CeeEEEEEcC
Q 044878 235 --SVQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~~-kr~LlVlDdv 253 (368)
.+.+.++.. +++||++||+
T Consensus 229 a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 229 ATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHcCCCEEEEccch
Confidence 122233333 9999999999
No 408
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.72 E-value=0.0089 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..|.|+|+.|+|||||++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 45899999999999999999986
No 409
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.72 E-value=0.039 Score=53.16 Aligned_cols=83 Identities=11% Similarity=0.090 Sum_probs=45.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccC------CCCCCChH--------
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLS------SCGLTDLN-------- 234 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~------~~~~~~~~-------- 234 (368)
-..++|+|+.|+|||||++.+.... .....+++..--..-++.++....+...... ..+.....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~--~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD--AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC--CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3578999999999999999887642 2222344443323334444444444332111 01111111
Q ss_pred -HHHHHHHhc-CeeEEEEEcC
Q 044878 235 -SVQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 235 -~l~~~l~~~-kr~LlVlDdv 253 (368)
.+.+.++.. +.+||++||+
T Consensus 243 ~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 122233333 9999999998
No 410
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.72 E-value=0.013 Score=57.90 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+.+|+|.|+.|+||||||+.+...
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 56789999999999999999999875
No 411
>PLN02348 phosphoribulokinase
Probab=95.70 E-value=0.01 Score=55.93 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+.+.+|+|.|.+|+||||||+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998763
No 412
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.69 E-value=0.0077 Score=49.31 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 413
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.69 E-value=0.11 Score=43.42 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=61.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeE--EEEecCCCCHHHHHHHHHHHhccC--CCC----CCC----hH--
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKA--WVCVSDDFDVLRISKAILESITLS--SCG----LTD----LN-- 234 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~--wv~vs~~~~~~~l~~~il~~l~~~--~~~----~~~----~~-- 234 (368)
...|-|++..|.||||.|..+.-......+.+.+ |+.-.........+..+ .+... ..+ ..+ ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 3578888899999999998877664333333211 33333233444444443 11110 000 011 11
Q ss_pred -----HHHHHHHhcCeeEEEEEcCcc---CChhhHHHhhhhcCCCCCCcEEEEEeCChH
Q 044878 235 -----SVQLKLKEAKKFLIVLDDVWD---KKYELWQALKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 235 -----~l~~~l~~~kr~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 285 (368)
...+.+....-=|||||.+-. ...-..+.+...+.....+..||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 111112221334999999831 112344566666666666779999999863
No 414
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.68 E-value=0.009 Score=47.85 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 57999999999999999998764
No 415
>PRK13975 thymidylate kinase; Provisional
Probab=95.68 E-value=0.0096 Score=51.01 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999873
No 416
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.67 E-value=0.022 Score=57.53 Aligned_cols=44 Identities=20% Similarity=0.319 Sum_probs=34.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+++|.++..+.+...+... +.+.++|++|+||||||+.+.+..
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l 61 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELL 61 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHc
Confidence 46788888887777777542 245599999999999999999874
No 417
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.66 E-value=0.011 Score=50.83 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=22.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 418
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.66 E-value=0.037 Score=58.23 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=69.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccc---cCeEEEEecCCC----CHH--HHHHHHHHHhccCCCCCCChHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAF---EPKAWVCVSDDF----DVL--RISKAILESITLSSCGLTDLNSVQLK 239 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F---~~~~wv~vs~~~----~~~--~l~~~il~~l~~~~~~~~~~~~l~~~ 239 (368)
..-+.|+|.+|+||||+.+.+.-....+++ +..+++...... ... .+..-+...+.. .............
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~-~~~~~~~~~~~~e 300 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFS-QGIAKQLIEAHQE 300 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhc-cCCcchhhHHHHH
Confidence 346899999999999999998766433332 244555433110 111 122222222222 2222222222234
Q ss_pred HHhcCeeEEEEEcCccCChh----hHHHhhhhcCCCCCCcEEEEEeCChHHHhhcCCCCceeCCCCChhH
Q 044878 240 LKEAKKFLIVLDDVWDKKYE----LWQALKSPFMAGAPGSRIIVTTRSMVVALTMGSGKNYELKLLSDDD 305 (368)
Q Consensus 240 l~~~kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~~~~~~~l~~L~~~~ 305 (368)
+.+..++|+.+|.+...... ....+...++ .-+.+.+|+|.|....-........+++..+.++.
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~ 369 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQ 369 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhhhccchhhhHHH
Confidence 55559999999998553221 1112222222 23577999999875444333333345555555443
No 419
>PF13245 AAA_19: Part of AAA domain
Probab=95.66 E-value=0.026 Score=40.33 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=16.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+++.|.|++|.|||+++......
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56778999999999655554443
No 420
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.64 E-value=0.041 Score=51.12 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=41.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-cccc----ccCeEEEEecCCCCHHHHHHHHHHHhc
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA----FEPKAWVCVSDDFDVLRISKAILESIT 224 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----F~~~~wv~vs~~~~~~~l~~~il~~l~ 224 (368)
..-.++-|+|++|+|||+|+.++.-.. .... =..++||+....|+..++.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 446789999999999999999987653 2111 13789999988888877654 444443
No 421
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.63 E-value=0.024 Score=48.35 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998873
No 422
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.63 E-value=0.0087 Score=49.69 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.4
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999875
No 423
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.62 E-value=1.5 Score=40.34 Aligned_cols=132 Identities=11% Similarity=0.078 Sum_probs=78.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-cc--------ccccCeEEEEe-cCCCCHHHHHHHHHHHhccCCCCCCChHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LT--------EAFEPKAWVCV-SDDFDVLRISKAILESITLSSCGLTDLNSVQL 238 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~--------~~F~~~~wv~v-s~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~ 238 (368)
..+..++|..|.||+++|..+.+.. .. .|-+...++.. +....+.++. ++.+.+.....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~---------- 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSSF---------- 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCCc----------
Confidence 4567799999999999999998774 21 11112233321 1222333322 33333321110
Q ss_pred HHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcC-CCCceeCCCCChhHHHHHHHHh
Q 044878 239 KLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMG-SGKNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 239 ~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~-~~~~~~l~~L~~~~~~~lf~~~ 313 (368)
...++=++|+|++...+....+.+...+..-..++.+|++|.+. .+...+. -...+++.+++.++....+...
T Consensus 87 --~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 87 --VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred --ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 00156688999997777667788888887766777777666543 3332222 2357899999999888766553
No 424
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.61 E-value=0.044 Score=52.72 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=48.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC-HHHHHHHHHHHhccCC-------CCCCChHH------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD-VLRISKAILESITLSS-------CGLTDLNS------ 235 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~~-------~~~~~~~~------ 235 (368)
..++|+|..|+|||||++.+.+.. . .+..+.+-+++... +.++..+.+..-+... .+......
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~-~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~ 235 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA-D--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYL 235 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc-C--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHH
Confidence 568999999999999999998762 1 23455566766553 3344444443322111 11111111
Q ss_pred ---HHHHHHhc-CeeEEEEEcC
Q 044878 236 ---VQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 236 ---l~~~l~~~-kr~LlVlDdv 253 (368)
+.+.++.. +.+||++||+
T Consensus 236 a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 236 TLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHCCCcEEEEEeCc
Confidence 22333333 9999999999
No 425
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.77 Score=46.77 Aligned_cols=151 Identities=18% Similarity=0.131 Sum_probs=84.4
Q ss_pred CceecccccHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKN----D--PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.++=|.++-+.+|.+-+.-+ + .++..+..=|.++|++|.|||-||++|.... .- .|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-sL-----~FlSVKGP------ 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-SL-----NFLSVKGP------ 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-ee-----eEEeecCH------
Confidence 45778888888888765321 0 0010224457899999999999999999872 22 23444332
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC---------hhhHHHhhhh----cC---C-CCCCcEEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK---------YELWQALKSP----FM---A-GAPGSRII 278 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~---------~~~~~~l~~~----l~---~-~~~gs~Ii 278 (368)
+++..--++ ...+...+.++-+...+|+|.||.+.+.. ....+.+.+. +. + ...+--||
T Consensus 740 --ELLNMYVGq--SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 740 --ELLNMYVGQ--SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred --HHHHHHhcc--hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 222222111 12455666666666699999999996532 2234433322 22 1 22333455
Q ss_pred EEeCChHHHh--hcCCC---CceeCCCCChhHHHH
Q 044878 279 VTTRSMVVAL--TMGSG---KNYELKLLSDDDCWS 308 (368)
Q Consensus 279 vTtR~~~va~--~~~~~---~~~~l~~L~~~~~~~ 308 (368)
=.|..++... .+..+ +-+.+.+=+..++..
T Consensus 816 GATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 816 GATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred ecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 5566555432 22333 345677666666644
No 426
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.61 E-value=0.011 Score=55.32 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=36.1
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++|.++.+..|...+.+ +.+.-+.|.|..|+||||+|+.+++-
T Consensus 17 ~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4588999888888777765 34455679999999999999999765
No 427
>PRK13948 shikimate kinase; Provisional
Probab=95.60 E-value=0.012 Score=49.77 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+.|.++|+.|+||||+++.+.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999886
No 428
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.59 E-value=0.091 Score=54.54 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=59.2
Q ss_pred cccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 044878 148 DEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSS 227 (368)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~ 227 (368)
..+....+..+... .++..|.|.+|+||||+++.+..-. ... ...+..+.+..-... .+-+..+.
T Consensus 354 s~~Q~~Av~~i~~s-------~~~~il~G~aGTGKTtll~~i~~~~-~~~-g~~V~~~ApTg~Aa~----~L~~~~g~-- 418 (744)
T TIGR02768 354 SEEQYEAVRHVTGS-------GDIAVVVGRAGTGKSTMLKAAREAW-EAA-GYRVIGAALSGKAAE----GLQAESGI-- 418 (744)
T ss_pred CHHHHHHHHHHhcC-------CCEEEEEecCCCCHHHHHHHHHHHH-HhC-CCeEEEEeCcHHHHH----HHHhccCC--
Confidence 44444455555431 2478899999999999999987653 211 223333332211111 11111121
Q ss_pred CCCCChHHHHHHHHhc-----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe
Q 044878 228 CGLTDLNSVQLKLKEA-----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT 281 (368)
Q Consensus 228 ~~~~~~~~l~~~l~~~-----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt 281 (368)
....+..+....... +.-|||+|++.-.+......|.... ...|++||+.-
T Consensus 419 -~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~--~~~~~kliLVG 474 (744)
T TIGR02768 419 -ESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEA--EEAGAKVVLVG 474 (744)
T ss_pred -ceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHH--HhcCCEEEEEC
Confidence 112233322211111 5679999998554444455544322 23578887765
No 429
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.58 E-value=0.027 Score=49.21 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
+++.|+|+.|.||||+.+.+.-
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 430
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.56 E-value=2.3 Score=40.60 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=37.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC--CCCHHHHHHHHHHHhccC
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD--DFDVLRISKAILESITLS 226 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~--~~~~~~l~~~il~~l~~~ 226 (368)
..+.||-.+|.-|+||||-|-++.+.. +. .....-+...+ .+..-+-++.+.++++.+
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~l-kk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYL-KK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHH-HH-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 457899999999999999999888774 22 33233222222 234445566666666543
No 431
>PLN02200 adenylate kinase family protein
Probab=95.55 E-value=0.012 Score=52.02 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+.+|.|.|++|+||||+|+.+.+.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999876
No 432
>PRK08506 replicative DNA helicase; Provisional
Probab=95.55 E-value=1.4 Score=43.23 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=36.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhc
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESIT 224 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~ 224 (368)
-.++.|-|.+|+|||++|..+..+..+.. ..++++ |-..+..++...++....
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g-~~V~~f--SlEMs~~ql~~Rlla~~s 244 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQD-KGVAFF--SLEMPAEQLMLRMLSAKT 244 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcC-CcEEEE--eCcCCHHHHHHHHHHHhc
Confidence 35788899999999999999987742222 234444 444567777777766543
No 433
>PRK05748 replicative DNA helicase; Provisional
Probab=95.54 E-value=1.4 Score=43.14 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=36.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhc
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESIT 224 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~ 224 (368)
-.++.|-|.+|+|||+||..+..+. .+.. ..++++ |-..+..++...++...+
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g-~~v~~f--SlEms~~~l~~R~l~~~~ 256 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTD-KNVAIF--SLEMGAESLVMRMLCAEG 256 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCC-CeEEEE--eCCCCHHHHHHHHHHHhc
Confidence 4578899999999999999998764 2222 234454 444466677777765543
No 434
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.54 E-value=0.049 Score=50.38 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=40.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHHHHHHHHhc
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILESIT 224 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~ 224 (368)
..-.++-|+|++|+|||||+.+++-.. ... .=..++||+....|+..++.+ +++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 345789999999999999999987653 211 112789999988888877543 444443
No 435
>PRK05922 type III secretion system ATPase; Validated
Probab=95.52 E-value=0.048 Score=52.34 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=45.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-CCHHHHHHHHHHHhccCCC-------CCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILESITLSSC-------GLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~~-------~~~~~~------- 234 (368)
..++|.|..|+|||||.+.+.... ..+....+.++.. ....+.+.+.......... +.....
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~---~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~ 234 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS---KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRA 234 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC---CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHH
Confidence 458999999999999999998762 2233333334332 2334555554443322211 111111
Q ss_pred --HHHHHHHhc-CeeEEEEEcC
Q 044878 235 --SVQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~~-kr~LlVlDdv 253 (368)
.+.+.++.. +++||++||+
T Consensus 235 a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 235 AMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 122333333 9999999999
No 436
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.52 E-value=0.011 Score=50.78 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
-.|++|+|++|+|||||.+-+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 36899999999999999998865
No 437
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.51 E-value=0.011 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||...+.-
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999863
No 438
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.51 E-value=0.045 Score=52.90 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=51.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILESITLSS-------CGLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~------- 234 (368)
.-++|.|..|+|||||+.++......++=+.++++-+++.. .+.++.++++..-.... .+.....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~ 224 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT 224 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 45899999999999999998776422222456777777654 44566666655322111 1111111
Q ss_pred --HHHHHHHh-c-CeeEEEEEcC
Q 044878 235 --SVQLKLKE-A-KKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~-~-kr~LlVlDdv 253 (368)
.+.+.++. . +++||++||+
T Consensus 225 a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 225 GLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHhcCCceEEEecch
Confidence 23334444 3 9999999999
No 439
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.49 E-value=0.012 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++.|+|+.|+|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999986
No 440
>PRK14529 adenylate kinase; Provisional
Probab=95.48 E-value=0.04 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.8
Q ss_pred EEEEecCCcchHHHHHHHHhhh
Q 044878 172 IPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|.|.|++|+||||+|+.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998764
No 441
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.47 E-value=0.064 Score=51.73 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=51.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILESITLSS-------CGLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~------- 234 (368)
.-++|.|..|+|||||+.++......++=..++++-+++.. .+.+++++++..-.... .+.....
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~ 223 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT 223 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 45889999999999999998876423333466777777654 44566666654321111 1111111
Q ss_pred --HHHHHHHh--cCeeEEEEEcC
Q 044878 235 --SVQLKLKE--AKKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~--~kr~LlVlDdv 253 (368)
.+.+.++. .+++||++||+
T Consensus 224 a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 224 GLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHhcCCeeEEEecch
Confidence 22333433 28999999999
No 442
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.47 E-value=0.047 Score=53.22 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=71.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|....+.++...+..-.. .... +.|.|..|+||+++|+.+.... ...-...+.+.++.- . ...+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lA~~ih~~s-~~~~~~~v~v~c~~~-~-~~~~~~~-- 209 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAP---SDIT-VLLLGESGTGKEVLARALHQLS-DRKDKRFVAINCAAI-P-ENLLESE-- 209 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhC---CCCC-EEEECCCCcCHHHHHHHHHHhC-CcCCCCeEEEECCCC-C-hHHHHHH--
Confidence 3588888888887776654221 2233 5599999999999999998753 111112233333332 1 2222222
Q ss_pred HhccCCCCC-C-ChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCCh
Q 044878 222 SITLSSCGL-T-DLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSM 284 (368)
Q Consensus 222 ~l~~~~~~~-~-~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~ 284 (368)
+.+...+. . ........+.....-.|+||++...+......+...+..+. ...+||.||...
T Consensus 210 -lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 210 -LFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred -hcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 11111100 0 00000011112245578999998877666667766664321 135888888754
No 443
>PRK04182 cytidylate kinase; Provisional
Probab=95.46 E-value=0.012 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887
No 444
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.45 E-value=0.048 Score=52.41 Aligned_cols=46 Identities=9% Similarity=0.140 Sum_probs=33.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKA 218 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~ 218 (368)
..++|.|..|+|||||.+.+++.. .-+.++++-+++.. .+.++...
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~---~~dv~V~~liGERgrEv~ef~~~ 209 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA---EVDVTVLALIGERGREVREFIES 209 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC---CCCEEEEEEEccCcHHHHHHHHH
Confidence 578999999999999999999862 22456777777764 33344433
No 445
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.43 E-value=0.039 Score=49.54 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=52.1
Q ss_pred EEEEEEecCCcchHHHH-HHHHhhhccccccCe-EEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCChH-----
Q 044878 170 RVIPLVGMGGIRKTALS-QEVYNDKLTEAFEPK-AWVCVSDDF-DVLRISKAILESITLSS-------CGLTDLN----- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~F~~~-~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~----- 234 (368)
.-++|.|..|+|||+|| ..+.+. . +-+.+ +++-+.+.. ...++.+++.+.-.... .+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~-~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ-K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh-c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 45889999999999995 666554 2 23444 566677654 44566666554321111 1111111
Q ss_pred ----HHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhc
Q 044878 235 ----SVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPF 268 (368)
Q Consensus 235 ----~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l 268 (368)
.+.+.+... +.+||++||+-.- ...|.++...+
T Consensus 147 ~~a~aiAE~fr~~G~~Vlvl~DslTr~-A~A~rEisl~~ 184 (274)
T cd01132 147 YTGCAMGEYFMDNGKHALIIYDDLSKQ-AVAYRQMSLLL 184 (274)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcChHHH-HHHHHHHHHhc
Confidence 122333333 9999999999321 13344444433
No 446
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.43 E-value=0.019 Score=57.42 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+|..+.|.+-.+.|.+..-... ....+|.|+|+.|+||||+|+.+....
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~----~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRH----KQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CChhhcHHHHHHHHHHHhcccc----CCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 5667777777776666554332 445688999999999999999999874
No 447
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.42 E-value=0.049 Score=56.03 Aligned_cols=82 Identities=15% Similarity=0.068 Sum_probs=51.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLK 241 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 241 (368)
+.-+++-|.|++|+|||||+.+++... ...-..++|+.....++.. .+++++.+.. .....+.....+.
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a-~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA-QAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 456888999999999999998876652 2233567899887777632 5556654421 1122233322222
Q ss_pred h----cCeeEEEEEcCc
Q 044878 242 E----AKKFLIVLDDVW 254 (368)
Q Consensus 242 ~----~kr~LlVlDdvw 254 (368)
. .+--|||+|.+-
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 2 256689999985
No 448
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.41 E-value=0.1 Score=52.77 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=58.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhcc--ccccCeEEEEecCCCCHHHHHHHHHHHhccCCC------CCCChHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLT--EAFEPKAWVCVSDDFDVLRISKAILESITLSSC------GLTDLNSVQLKLK 241 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~------~~~~~~~l~~~l~ 241 (368)
++..|.|.+|.||||++..+.....+ ..-...+.+..+..-....+.+.+-..+..-.. ........++++.
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 67889999999999999998876311 111245555555544445555444332211100 0001112222222
Q ss_pred hc------------Ce---eEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe
Q 044878 242 EA------------KK---FLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT 281 (368)
Q Consensus 242 ~~------------kr---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt 281 (368)
.. .+ =+||+|...-.+......+...++ +++|+|+--
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvG 299 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLG 299 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEec
Confidence 21 11 289999985444444555555554 567877653
No 449
>PLN02796 D-glycerate 3-kinase
Probab=95.41 E-value=0.014 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.047 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+-+|+|.|+.|+|||||++.+...
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 35688999999999999999999876
No 450
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.41 E-value=0.035 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=21.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999874
No 451
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.41 E-value=0.02 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+.+++.++|++|+||||++.++....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999988663
No 452
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.40 E-value=0.012 Score=52.44 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999985
No 453
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.40 E-value=0.08 Score=49.04 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=45.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-CCHHHHHHHHHHHhccCC-------CCCCChH-------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISKAILESITLSS-------CGLTDLN------- 234 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~il~~l~~~~-------~~~~~~~------- 234 (368)
..++|+|..|+|||||.+.+.... . -+......+... -++.++....+..-.... .+.....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~-~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~ 146 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGT-T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYT 146 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC-C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999888762 2 123333444432 344555555544322111 1111111
Q ss_pred --HHHHHHHhc-CeeEEEEEcC
Q 044878 235 --SVQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 235 --~l~~~l~~~-kr~LlVlDdv 253 (368)
.+.+.+... +.+||++||+
T Consensus 147 a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 147 ATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHcCCCeEEEeccc
Confidence 122233323 9999999997
No 454
>PRK13946 shikimate kinase; Provisional
Probab=95.40 E-value=0.013 Score=49.77 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+.|.++|++|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999873
No 455
>PRK06761 hypothetical protein; Provisional
Probab=95.39 E-value=0.017 Score=52.31 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=22.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
++|.|.|++|+||||+++.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999874
No 456
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.37 E-value=0.014 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+..-++|+|++|+|||||.+.+...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3455899999999999999999875
No 457
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.36 E-value=0.023 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
+++.+.|.||+||||+|....-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5789999999999999977654
No 458
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.36 E-value=0.024 Score=52.66 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 151 KDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++.+.... .+..+|+|.|++|+|||||+..+...
T Consensus 42 ~~~l~~~~~~~~----~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPHT----GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhcC----CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 344555554322 56789999999999999999988765
No 459
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.35 E-value=0.09 Score=51.23 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=49.3
Q ss_pred EEEEEEecCCcchHHHH-HHHHhhh-cc-----ccccCeEEEEecCCCCHHHHHHHHHHHhc-cCCC-------CCCCh-
Q 044878 170 RVIPLVGMGGIRKTALS-QEVYNDK-LT-----EAFEPKAWVCVSDDFDVLRISKAILESIT-LSSC-------GLTDL- 233 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa-~~v~~~~-~~-----~~F~~~~wv~vs~~~~~~~l~~~il~~l~-~~~~-------~~~~~- 233 (368)
.-++|.|..|+|||+|| ..+.+.. +. ++-..++++.+++..+.-.-+.+.+++-+ .+.. +....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 34789999999999997 6667663 21 23456788888887643332444444433 1110 11111
Q ss_pred --------HHHHHHHHhc-CeeEEEEEcC
Q 044878 234 --------NSVQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 234 --------~~l~~~l~~~-kr~LlVlDdv 253 (368)
-.+.+.++.. +..|||+||+
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 1122333333 9999999999
No 460
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.34 E-value=0.04 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-..+.|+|+.|+|||||++.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc
Confidence 357999999999999999988865
No 461
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.018 Score=47.28 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++.|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999998887765
No 462
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.32 E-value=0.016 Score=45.05 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=19.5
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999974
No 463
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.32 E-value=0.019 Score=50.96 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.6
Q ss_pred EEecCCcchHHHHHHHHhhh
Q 044878 174 LVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 174 I~G~gGiGKTtLa~~v~~~~ 193 (368)
|+||+|+||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999874
No 464
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.31 E-value=0.023 Score=48.70 Aligned_cols=41 Identities=22% Similarity=0.304 Sum_probs=30.3
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHh
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
+++|.+..+..+.-..... .-+.++|++|+|||+||+.+-.
T Consensus 4 dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 5778877777777666532 3588999999999999999875
No 465
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.31 E-value=0.015 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999876
No 466
>PRK14532 adenylate kinase; Provisional
Probab=95.31 E-value=0.013 Score=49.81 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=19.4
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|.|.|++|+||||+|+.+.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999876
No 467
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.31 E-value=0.14 Score=40.23 Aligned_cols=37 Identities=11% Similarity=-0.155 Sum_probs=26.7
Q ss_pred EEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEec
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVS 207 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs 207 (368)
.+.|.|+.|+|||+.+....... ........+|++.+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~ 39 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPT 39 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCc
Confidence 36789999999999998888775 33344556666533
No 468
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.30 E-value=0.025 Score=51.33 Aligned_cols=26 Identities=31% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+..++.|+|.+|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999987
No 469
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.019 Score=47.64 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
++..+|-+.|.+|+||||+|..++...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 556899999999999999999999874
No 470
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.29 E-value=0.24 Score=55.40 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++=|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999999987
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.28 E-value=0.023 Score=48.37 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-..+.|+|+.|+|||||++.+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999998765
No 472
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.28 E-value=0.021 Score=53.27 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=34.9
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++|.++.+..++-.+..+ ...-+.|.|..|+|||||++.+..-
T Consensus 5 ~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred ccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHHh
Confidence 5789888888877666652 3445779999999999999999754
No 473
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.28 E-value=0.014 Score=50.94 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
No 474
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.27 E-value=0.014 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999886
No 475
>PRK15453 phosphoribulokinase; Provisional
Probab=95.27 E-value=0.017 Score=51.92 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+..+|+|.|.+|+||||+|+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i 28 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI 28 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998865
No 476
>PRK07004 replicative DNA helicase; Provisional
Probab=95.26 E-value=1 Score=44.05 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=36.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESI 223 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l 223 (368)
.-..+.|-|.+|+|||++|..+..+. ..... .++++ |-..+..++...++...
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~-~v~~f--SlEM~~~ql~~R~la~~ 265 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGL-PVAVF--SMEMPGTQLAMRMLGSV 265 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCC-eEEEE--eCCCCHHHHHHHHHHhh
Confidence 34578889999999999999987764 33222 33443 55556777777776554
No 477
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.26 E-value=0.017 Score=47.77 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
++++|+|..|+|||||+..+....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999874
No 478
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.26 E-value=0.037 Score=43.47 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+-.||.+.|.=|+|||||++.+....
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 44799999999999999999998764
No 479
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.26 E-value=0.014 Score=50.60 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|+|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999753
No 480
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.26 E-value=0.024 Score=55.97 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=27.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC 205 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~ 205 (368)
..+++.+.||+|+||||.++.+.+.. .|+.+-|..
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~n 78 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWIN 78 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecC
Confidence 45699999999999999999999873 344455653
No 481
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=95.26 E-value=0.39 Score=39.10 Aligned_cols=114 Identities=16% Similarity=0.286 Sum_probs=63.1
Q ss_pred HHHhhhhcCccccCCCCCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHH--HHHHHHhhhccccccCeE
Q 044878 125 LCKRRAVLGLEKIAGGEPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTA--LSQEVYNDKLTEAFEPKA 202 (368)
Q Consensus 125 i~~~~~~~~~~~~~~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt--La~~v~~~~~~~~F~~~~ 202 (368)
++-+..+|--.........-+-| +++.-|+++|..--.. ++.++|+|-||+-+|||. +|..||.+ .-
T Consensus 13 lAvRHGryi~rd~~d~kTfrFvR-eeLGlLVDFmaEl~K~--~Gh~lIGiRGmPRVGKTEsivAasVcAn--------Kr 81 (192)
T PF11868_consen 13 LAVRHGRYIDRDADDKKTFRFVR-EELGLLVDFMAELFKE--EGHKLIGIRGMPRVGKTESIVAASVCAN--------KR 81 (192)
T ss_pred HHhhcccccccccCCCceeEEEh-hHhccHHHHHHHHHHh--cCceEEeecCCCccCchhHHHHHhhhcC--------ce
Confidence 34455555433322212223333 4455566655331111 577999999999999997 55666665 36
Q ss_pred EEEecCCCCHHHHHHHHH-HHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC---ChhhHHHhhhhc
Q 044878 203 WVCVSDDFDVLRISKAIL-ESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK---KYELWQALKSPF 268 (368)
Q Consensus 203 wv~vs~~~~~~~l~~~il-~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~---~~~~~~~l~~~l 268 (368)
|.-+|.. ++++-+ .++...... ...+.++|++-+. +...|.-+...+
T Consensus 82 W~f~SST-----likQTvRs~L~~dE~~--------------~~~ifIIDGivSt~r~~e~H~~Lvreim 132 (192)
T PF11868_consen 82 WLFLSST-----LIKQTVRSQLIEDEYN--------------ENNIFIIDGIVSTRRSNERHWQLVREIM 132 (192)
T ss_pred EEEeeHH-----HHHHHHHHHhhhcccC--------------cCcEEEEeeeeeeccCCHHHHHHHHHHH
Confidence 8877763 333322 222211100 5678899998543 335677666655
No 482
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.24 E-value=0.015 Score=46.91 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.++|..|+|||||++.+....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 47789999999999999998764
No 483
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.23 E-value=0.015 Score=49.63 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998754
No 484
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.22 E-value=0.013 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 457899999999999999999875
No 485
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.22 E-value=0.013 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+.|+|.|-||+||||++..+....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~L 24 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAAL 24 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHH
Confidence 468999999999999998887654
No 486
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.21 E-value=0.11 Score=53.61 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=54.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHH---------HH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQL---------KL 240 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~---------~l 240 (368)
+++.|.|.+|+||||+++.+.+......-...++++.+..-....+ .+..+.. ...+..+.. ..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g~~---a~Tih~lL~~~~~~~~~~~~ 411 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL----GEVTGLT---ASTIHRLLGYGPDTFRHNHL 411 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH----HHhcCCc---cccHHHHhhccCCccchhhh
Confidence 4788999999999999999987631111114566655443332222 2222111 111111111 00
Q ss_pred Hh-cCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEE
Q 044878 241 KE-AKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVT 280 (368)
Q Consensus 241 ~~-~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT 280 (368)
.. ...-+||+|.+.-.+...+..+...++ .|++||+.
T Consensus 412 ~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilv 449 (720)
T TIGR01448 412 EDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLV 449 (720)
T ss_pred hccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEE
Confidence 11 145689999996655455556655544 56787774
No 487
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.20 E-value=0.067 Score=51.43 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=33.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAIL 220 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il 220 (368)
-..++|+|..|+|||||++.+.+.. +.+..+++.+++.. .+.+++.+..
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~---~~d~~vi~~iGeRgrEv~efl~~~~ 204 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP---DADSNVLVLIGERGREVREFIDFTL 204 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC---CCCEEEEEEECCCchHHHHHHHHhh
Confidence 3578999999999999999888752 23445555555543 4445555543
No 488
>PRK06904 replicative DNA helicase; Validated
Probab=95.19 E-value=2.5 Score=41.50 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=36.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhc
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESIT 224 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~ 224 (368)
-.++.|-|.+|+|||++|..+..+. .... ..++++ |-..+..++...++....
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~g-~~Vl~f--SlEMs~~ql~~Rlla~~s 274 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMASE-KPVLVF--SLEMPAEQIMMRMLASLS 274 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhcC-CeEEEE--eccCCHHHHHHHHHHhhC
Confidence 3578889999999999998887764 2222 234444 555677788877776654
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.19 E-value=0.018 Score=53.37 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....++.++|++|+||||++.++....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356899999999999999999998763
No 490
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.18 E-value=0.015 Score=50.65 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
No 491
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.18 E-value=0.049 Score=52.20 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++|.|..|+|||||++.+...
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~ 163 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN 163 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 57899999999999999988875
No 492
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.017 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.. .+++|+|+.|+|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 45 89999999999999999999754
No 493
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.17 E-value=0.098 Score=47.29 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=33.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEec
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVS 207 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs 207 (368)
.++-+..|+|+.|+||+.|.+.+.... +...-+.++||+-.
T Consensus 85 ~qP~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~ 126 (369)
T PF02456_consen 85 LQPFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQ 126 (369)
T ss_pred CCceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCC
Confidence 345667788999999999999999877 77778888898743
No 494
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.16 E-value=0.026 Score=51.91 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....+|+|+|++|+|||||+..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999988753
No 495
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.16 E-value=0.017 Score=48.82 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999854
No 496
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.11 Score=46.73 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=56.0
Q ss_pred CceecccccHHHHHHHHhc---------CCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCH
Q 044878 142 PAVYGRDEDKDRMLDMVLK---------NDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDV 212 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~ 212 (368)
.++-|.+...+.|.+...- ... ...+-|.++|++|.||+.||++|.... . .-|++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR---~PwrgiLLyGPPGTGKSYLAKAVATEA-n-----STFFSvSSS--- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKR---KPWRGILLYGPPGTGKSYLAKAVATEA-N-----STFFSVSSS--- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCC---CcceeEEEeCCCCCcHHHHHHHHHhhc-C-----CceEEeehH---
Confidence 3567788777777765322 111 346788999999999999999999873 2 223445442
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCcc
Q 044878 213 LRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWD 255 (368)
Q Consensus 213 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~ 255 (368)
++++.--+.+ ..-...+.+.-++.|+-+|.+|.+..
T Consensus 201 -----DLvSKWmGES--EkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 -----DLVSKWMGES--EKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred -----HHHHHHhccH--HHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1111111110 01112333444445889999999853
No 497
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.15 E-value=0.067 Score=52.01 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=37.4
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILE 221 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~ 221 (368)
.-++|.|..|+|||||+..+.....+.+=+.++++-+++.. .+.++...++.
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHh
Confidence 45889999999999999988876311222678888888765 34566666665
No 498
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.14 E-value=0.022 Score=51.49 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=26.6
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEe
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCV 206 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~v 206 (368)
++|+|+|.+|+|||||+.++.... ++.. .++-|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L-~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL-SGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH-HhCC-CEEEEEE
Confidence 579999999999999999999874 3222 3555543
No 499
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.14 E-value=0.083 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.104 Sum_probs=17.6
Q ss_pred EEEEEEecCCcchHH-HHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTA-LSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTt-La~~v~~~ 192 (368)
+.+.|.|+.|+|||+ ++..++..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 568899999999999 44445544
No 500
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.13 E-value=0.047 Score=49.07 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=36.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhcc
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITL 225 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~ 225 (368)
.++.|-|.+|+|||++|.++..+....+-..++|++ -..+..++...++.....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S--lEm~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS--LEMSEEELAARLLARLSG 73 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE--SSS-HHHHHHHHHHHHHT
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc--CCCCHHHHHHHHHHHhhc
Confidence 578888999999999999999886222224555554 444566777777766643
Done!