Query 044878
Match_columns 368
No_of_seqs 276 out of 2163
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044878.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044878hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.2E-36 2.1E-40 296.3 19.4 196 145-354 131-343 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-28 3.8E-33 266.0 17.7 207 139-365 121-343 (1249)
3 1vt4_I APAF-1 related killer D 100.0 8.8E-29 3E-33 251.6 15.5 196 142-362 128-349 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 1.2E-26 4E-31 232.2 17.9 205 139-365 121-343 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.8 4E-19 1.4E-23 137.8 5.7 77 1-77 5-83 (115)
6 2qen_A Walker-type ATPase; unk 99.6 5.6E-15 1.9E-19 137.3 17.9 193 141-352 11-250 (350)
7 2fna_A Conserved hypothetical 99.6 1.5E-14 5.1E-19 134.7 15.8 192 141-353 12-255 (357)
8 1w5s_A Origin recognition comp 99.6 3.6E-14 1.2E-18 135.0 16.3 203 141-349 21-267 (412)
9 1njg_A DNA polymerase III subu 99.5 3.6E-13 1.2E-17 118.0 18.6 187 142-351 23-231 (250)
10 2chg_A Replication factor C sm 99.5 3E-12 1E-16 110.6 18.0 186 142-349 17-205 (226)
11 2qby_B CDC6 homolog 3, cell di 99.5 2E-12 6.9E-17 121.8 17.6 219 141-365 19-268 (384)
12 2v1u_A Cell division control p 99.5 1.7E-12 5.7E-17 122.2 17.0 194 141-342 18-243 (387)
13 1fnn_A CDC6P, cell division co 99.4 9.9E-12 3.4E-16 117.1 19.2 204 141-347 16-246 (389)
14 2qby_A CDC6 homolog 1, cell di 99.4 2E-12 6.9E-17 121.6 12.8 201 141-346 19-243 (386)
15 1sxj_B Activator 1 37 kDa subu 99.3 5E-11 1.7E-15 109.4 15.2 188 142-350 21-212 (323)
16 1iqp_A RFCS; clamp loader, ext 99.2 1.5E-10 5.2E-15 106.3 13.1 189 141-351 24-215 (327)
17 1jr3_A DNA polymerase III subu 99.1 5.2E-09 1.8E-13 97.9 17.7 192 142-349 16-222 (373)
18 2chq_A Replication factor C sm 99.0 4.6E-09 1.6E-13 95.9 15.0 180 142-349 17-205 (319)
19 1hqc_A RUVB; extended AAA-ATPa 99.0 3.1E-09 1.1E-13 97.5 11.8 180 142-351 12-214 (324)
20 3bos_A Putative DNA replicatio 98.9 3.8E-09 1.3E-13 92.3 9.5 191 142-365 28-241 (242)
21 1sxj_D Activator 1 41 kDa subu 98.9 5.7E-08 2E-12 90.0 15.9 191 141-348 36-235 (353)
22 1jbk_A CLPB protein; beta barr 98.8 1.2E-08 4.1E-13 85.6 9.7 148 141-309 21-193 (195)
23 3te6_A Regulatory protein SIR3 98.8 2.8E-08 9.5E-13 90.4 11.4 166 144-314 22-211 (318)
24 3pfi_A Holliday junction ATP-d 98.8 1.9E-07 6.6E-12 86.0 15.7 177 142-348 29-227 (338)
25 2z4s_A Chromosomal replication 98.8 5.9E-08 2E-12 92.9 12.5 181 169-366 130-331 (440)
26 3syl_A Protein CBBX; photosynt 98.7 2.8E-07 9.7E-12 83.8 14.2 160 143-315 32-218 (309)
27 3uk6_A RUVB-like 2; hexameric 98.7 2.3E-07 7.9E-12 86.5 13.7 191 142-346 44-301 (368)
28 1sxj_A Activator 1 95 kDa subu 98.7 1.4E-07 4.8E-12 92.2 12.2 196 142-348 39-253 (516)
29 3pvs_A Replication-associated 98.6 3.1E-07 1.1E-11 87.9 13.8 179 142-348 26-215 (447)
30 3h4m_A Proteasome-activating n 98.6 3.1E-07 1.1E-11 82.5 12.3 182 142-346 17-229 (285)
31 3n70_A Transport activator; si 98.6 1.1E-07 3.6E-12 76.7 8.2 114 143-283 2-115 (145)
32 1l8q_A Chromosomal replication 98.6 1E-06 3.5E-11 80.7 15.2 154 169-342 37-202 (324)
33 3u61_B DNA polymerase accessor 98.6 1.6E-06 5.4E-11 79.4 15.6 178 142-348 26-216 (324)
34 2qz4_A Paraplegin; AAA+, SPG7, 98.6 2E-06 6.8E-11 76.0 15.7 187 142-347 6-221 (262)
35 1sxj_E Activator 1 40 kDa subu 98.6 4.2E-07 1.4E-11 84.3 11.7 194 142-349 14-238 (354)
36 1a5t_A Delta prime, HOLB; zinc 98.5 3.4E-06 1.2E-10 77.7 17.5 171 148-347 8-204 (334)
37 1sxj_C Activator 1 40 kDa subu 98.5 2.6E-06 8.9E-11 78.6 15.6 184 142-347 25-211 (340)
38 1d2n_A N-ethylmaleimide-sensit 98.5 6.7E-06 2.3E-10 73.3 17.2 192 142-364 33-258 (272)
39 3eie_A Vacuolar protein sortin 98.5 3.8E-06 1.3E-10 76.9 15.6 183 142-347 18-227 (322)
40 2p65_A Hypothetical protein PF 98.5 3.2E-07 1.1E-11 76.4 7.7 47 141-193 21-67 (187)
41 3d8b_A Fidgetin-like protein 1 98.4 6.7E-06 2.3E-10 76.4 16.9 187 142-348 84-295 (357)
42 2qp9_X Vacuolar protein sortin 98.4 3.8E-06 1.3E-10 78.0 14.9 186 142-347 51-260 (355)
43 3ec2_A DNA replication protein 98.4 4.8E-07 1.7E-11 75.5 8.0 101 169-283 38-142 (180)
44 2w58_A DNAI, primosome compone 98.4 5.4E-07 1.8E-11 76.6 7.6 100 170-283 55-158 (202)
45 2zan_A Vacuolar protein sortin 98.4 2.9E-05 1E-09 74.2 19.9 186 142-346 134-343 (444)
46 2gno_A DNA polymerase III, gam 98.4 4.8E-06 1.6E-10 75.5 13.0 148 146-314 1-152 (305)
47 1xwi_A SKD1 protein; VPS4B, AA 98.4 3.6E-05 1.2E-09 70.4 19.0 187 142-347 12-222 (322)
48 4fcw_A Chaperone protein CLPB; 98.4 5.4E-06 1.8E-10 75.2 13.5 167 142-313 17-228 (311)
49 3b9p_A CG5977-PA, isoform A; A 98.3 3.6E-05 1.2E-09 69.3 18.7 182 142-347 21-232 (297)
50 3pxg_A Negative regulator of g 98.3 3.7E-06 1.3E-10 81.0 12.5 148 142-314 180-338 (468)
51 2bjv_A PSP operon transcriptio 98.3 3.2E-06 1.1E-10 75.1 10.2 157 143-309 7-189 (265)
52 3co5_A Putative two-component 98.3 5.8E-07 2E-11 72.1 4.7 111 142-283 4-115 (143)
53 1ojl_A Transcriptional regulat 98.2 6.2E-06 2.1E-10 74.9 10.6 159 142-311 2-187 (304)
54 3vfd_A Spastin; ATPase, microt 98.2 7.8E-05 2.7E-09 70.0 18.5 187 142-348 115-326 (389)
55 3cf0_A Transitional endoplasmi 98.2 3.9E-05 1.3E-09 69.4 15.6 180 142-342 15-222 (301)
56 1in4_A RUVB, holliday junction 98.2 2.2E-05 7.5E-10 72.2 13.7 175 143-347 26-222 (334)
57 1qvr_A CLPB protein; coiled co 98.2 8E-06 2.7E-10 84.6 11.0 156 142-313 170-344 (854)
58 3pxi_A Negative regulator of g 98.1 1.6E-05 5.6E-10 81.3 12.4 156 142-314 491-675 (758)
59 1r6b_X CLPA protein; AAA+, N-t 98.1 3.2E-05 1.1E-09 79.1 14.5 152 141-314 185-362 (758)
60 1ofh_A ATP-dependent HSL prote 98.1 3.2E-05 1.1E-09 69.9 12.8 152 142-312 15-213 (310)
61 3pxi_A Negative regulator of g 98.0 2.9E-05 1E-09 79.4 12.6 148 142-314 180-338 (758)
62 2kjq_A DNAA-related protein; s 98.0 4.8E-06 1.6E-10 67.2 4.9 86 170-283 37-124 (149)
63 4b4t_J 26S protease regulatory 98.0 0.00027 9.1E-09 66.0 16.8 174 142-341 148-354 (405)
64 3hu3_A Transitional endoplasmi 97.9 3.2E-05 1.1E-09 74.7 9.9 185 142-347 204-414 (489)
65 4b4t_K 26S protease regulatory 97.9 0.00017 5.7E-09 68.2 14.6 174 142-341 172-379 (428)
66 4b4t_L 26S protease subunit RP 97.9 0.00027 9.3E-09 66.9 16.0 174 142-341 181-387 (437)
67 2r62_A Cell division protease 97.9 1.6E-05 5.3E-10 70.6 6.3 180 142-342 11-219 (268)
68 2c9o_A RUVB-like 1; hexameric 97.9 0.00016 5.5E-09 69.4 13.8 95 246-348 297-410 (456)
69 4b4t_H 26S protease regulatory 97.8 0.00025 8.6E-09 67.1 13.5 173 143-341 210-415 (467)
70 2r44_A Uncharacterized protein 97.7 0.00032 1.1E-08 64.1 12.9 152 142-315 27-199 (331)
71 2qgz_A Helicase loader, putati 97.7 1.5E-05 5.2E-10 72.4 3.8 117 150-283 136-257 (308)
72 1lv7_A FTSH; alpha/beta domain 97.7 0.0006 2.1E-08 59.8 13.9 184 142-346 12-223 (257)
73 2ce7_A Cell division protein F 97.7 0.00081 2.8E-08 64.5 15.6 178 142-341 16-221 (476)
74 4b4t_M 26S protease regulatory 97.7 0.00014 4.7E-09 68.8 9.5 174 142-341 181-387 (434)
75 4b4t_I 26S protease regulatory 97.7 0.00039 1.3E-08 65.2 12.1 174 142-341 182-388 (437)
76 1qvr_A CLPB protein; coiled co 97.6 0.00024 8.3E-09 73.5 11.2 135 143-283 559-710 (854)
77 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00015 5.2E-09 74.1 9.3 165 141-314 457-666 (758)
78 3m6a_A ATP-dependent protease 97.5 0.00056 1.9E-08 67.0 11.4 159 143-314 82-266 (543)
79 1um8_A ATP-dependent CLP prote 97.5 0.0012 4.2E-08 61.4 13.0 23 170-192 73-95 (376)
80 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 0.00054 1.9E-08 66.2 10.6 43 142-192 22-64 (500)
81 1g8p_A Magnesium-chelatase 38 97.5 0.00056 1.9E-08 62.8 10.3 45 142-192 24-68 (350)
82 1jr3_D DNA polymerase III, del 97.4 0.0042 1.5E-07 56.9 15.6 155 168-347 17-184 (343)
83 3t15_A Ribulose bisphosphate c 97.4 0.00044 1.5E-08 62.1 8.5 27 167-193 34-60 (293)
84 2cvh_A DNA repair and recombin 97.3 0.00096 3.3E-08 56.8 9.4 83 168-255 19-116 (220)
85 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.0011 3.8E-08 56.8 8.7 111 170-284 24-168 (235)
86 1ypw_A Transitional endoplasmi 97.2 0.001 3.5E-08 68.2 9.6 157 142-314 204-385 (806)
87 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00043 1.5E-08 62.5 5.7 34 169-206 123-156 (331)
88 3lw7_A Adenylate kinase relate 97.1 0.0044 1.5E-07 50.3 11.0 22 170-192 2-23 (179)
89 3cf2_A TER ATPase, transitiona 97.1 0.0027 9.3E-08 64.6 11.4 174 143-342 205-408 (806)
90 2dhr_A FTSH; AAA+ protein, hex 97.1 0.004 1.4E-07 60.0 11.8 176 142-341 31-236 (499)
91 1rz3_A Hypothetical protein rb 97.1 0.00059 2E-08 57.6 5.3 43 147-192 3-45 (201)
92 2x8a_A Nuclear valosin-contain 97.1 0.0071 2.4E-07 53.6 12.5 125 172-314 47-191 (274)
93 3hr8_A Protein RECA; alpha and 97.0 0.0023 7.7E-08 59.0 9.0 82 168-255 60-150 (356)
94 2b8t_A Thymidine kinase; deoxy 96.9 0.00089 3E-08 57.5 5.0 107 169-282 12-124 (223)
95 1n0w_A DNA repair protein RAD5 96.9 0.0044 1.5E-07 53.5 9.5 86 169-255 24-130 (243)
96 1cr0_A DNA primase/helicase; R 96.8 0.0043 1.5E-07 55.6 9.0 37 169-206 35-72 (296)
97 1v5w_A DMC1, meiotic recombina 96.8 0.0095 3.3E-07 54.6 11.4 87 167-254 120-229 (343)
98 3c8u_A Fructokinase; YP_612366 96.8 0.0011 3.9E-08 56.1 4.7 26 167-192 20-45 (208)
99 2z43_A DNA repair and recombin 96.8 0.0042 1.4E-07 56.6 8.8 86 168-254 106-213 (324)
100 2r6a_A DNAB helicase, replicat 96.8 0.093 3.2E-06 49.9 18.5 50 168-219 202-251 (454)
101 2zr9_A Protein RECA, recombina 96.8 0.0037 1.3E-07 57.5 8.4 83 168-256 60-151 (349)
102 2px0_A Flagellar biosynthesis 96.7 0.0056 1.9E-07 55.0 9.1 85 168-253 104-191 (296)
103 2q6t_A DNAB replication FORK h 96.7 0.062 2.1E-06 51.0 16.8 51 168-220 199-249 (444)
104 1u94_A RECA protein, recombina 96.6 0.0052 1.8E-07 56.6 8.2 82 168-255 62-152 (356)
105 1xp8_A RECA protein, recombina 96.6 0.0057 1.9E-07 56.6 8.5 82 168-255 73-163 (366)
106 3io5_A Recombination and repai 96.6 0.0036 1.2E-07 56.3 6.9 80 171-256 30-123 (333)
107 2i1q_A DNA repair and recombin 96.6 0.0077 2.6E-07 54.7 9.3 86 168-254 97-214 (322)
108 2orw_A Thymidine kinase; TMTK, 96.6 0.00035 1.2E-08 58.2 0.2 108 170-284 4-113 (184)
109 1zp6_A Hypothetical protein AT 96.6 0.0014 4.8E-08 54.5 3.8 25 168-192 8-32 (191)
110 1gvn_B Zeta; postsegregational 96.6 0.0026 8.9E-08 56.9 5.8 26 167-192 31-56 (287)
111 3kb2_A SPBC2 prophage-derived 96.5 0.0012 4.2E-08 53.7 3.1 23 170-192 2-24 (173)
112 1qhx_A CPT, protein (chloramph 96.5 0.0013 4.4E-08 54.0 3.1 23 170-192 4-26 (178)
113 1kgd_A CASK, peripheral plasma 96.5 0.0013 4.4E-08 54.4 3.1 24 169-192 5-28 (180)
114 1ly1_A Polynucleotide kinase; 96.5 0.0016 5.5E-08 53.4 3.5 22 170-191 3-24 (181)
115 3tqc_A Pantothenate kinase; bi 96.5 0.0023 8E-08 58.0 4.7 46 145-192 70-115 (321)
116 1odf_A YGR205W, hypothetical 3 96.4 0.0032 1.1E-07 56.4 5.5 27 167-193 29-55 (290)
117 3dm5_A SRP54, signal recogniti 96.4 0.048 1.6E-06 51.5 13.7 25 168-192 99-123 (443)
118 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0049 1.7E-07 58.5 6.9 83 171-253 153-254 (473)
119 3uie_A Adenylyl-sulfate kinase 96.4 0.0019 6.4E-08 54.4 3.7 26 167-192 23-48 (200)
120 2p5t_B PEZT; postsegregational 96.4 0.0026 8.8E-08 55.7 4.7 26 167-192 30-55 (253)
121 4a1f_A DNAB helicase, replicat 96.4 0.047 1.6E-06 49.8 13.2 50 169-221 46-95 (338)
122 3ice_A Transcription terminati 96.4 0.0032 1.1E-07 58.2 5.4 53 153-210 163-216 (422)
123 1ex7_A Guanylate kinase; subst 96.4 0.0016 5.6E-08 54.2 3.1 23 170-192 2-24 (186)
124 3vaa_A Shikimate kinase, SK; s 96.4 0.0017 6E-08 54.5 3.3 24 169-192 25-48 (199)
125 3hws_A ATP-dependent CLP prote 96.4 0.0026 9E-08 58.8 4.8 49 144-192 17-74 (363)
126 1kag_A SKI, shikimate kinase I 96.4 0.0014 4.7E-08 53.6 2.5 23 170-192 5-27 (173)
127 2rhm_A Putative kinase; P-loop 96.3 0.0025 8.5E-08 52.9 3.9 25 168-192 4-28 (193)
128 3asz_A Uridine kinase; cytidin 96.3 0.0023 8E-08 54.1 3.8 26 167-192 4-29 (211)
129 3tr0_A Guanylate kinase, GMP k 96.3 0.002 6.7E-08 54.2 3.2 23 170-192 8-30 (205)
130 4gp7_A Metallophosphoesterase; 96.3 0.0019 6.3E-08 53.0 2.9 24 168-191 8-31 (171)
131 3tau_A Guanylate kinase, GMP k 96.3 0.0022 7.6E-08 54.3 3.4 25 168-192 7-31 (208)
132 1nks_A Adenylate kinase; therm 96.3 0.0025 8.5E-08 52.8 3.6 24 170-193 2-25 (194)
133 3trf_A Shikimate kinase, SK; a 96.3 0.0021 7.2E-08 53.1 3.1 24 169-192 5-28 (185)
134 4eun_A Thermoresistant glucoki 96.3 0.0022 7.6E-08 53.9 3.3 25 168-192 28-52 (200)
135 1knq_A Gluconate kinase; ALFA/ 96.3 0.0025 8.6E-08 52.1 3.4 25 168-192 7-31 (175)
136 3a00_A Guanylate kinase, GMP k 96.2 0.0018 6.2E-08 53.8 2.4 23 170-192 2-24 (186)
137 3t61_A Gluconokinase; PSI-biol 96.2 0.0022 7.4E-08 54.0 2.9 24 169-192 18-41 (202)
138 2bdt_A BH3686; alpha-beta prot 96.2 0.0027 9.1E-08 52.8 3.4 23 170-192 3-25 (189)
139 1uf9_A TT1252 protein; P-loop, 96.2 0.0032 1.1E-07 52.7 3.9 26 167-192 6-31 (203)
140 3jvv_A Twitching mobility prot 96.2 0.002 6.7E-08 59.5 2.8 111 169-288 123-235 (356)
141 1uj2_A Uridine-cytidine kinase 96.2 0.0028 9.7E-08 55.4 3.6 26 167-192 20-45 (252)
142 1ye8_A Protein THEP1, hypothet 96.2 0.0026 9E-08 52.5 3.2 22 171-192 2-23 (178)
143 2j41_A Guanylate kinase; GMP, 96.2 0.0028 9.5E-08 53.3 3.4 24 169-192 6-29 (207)
144 2qt1_A Nicotinamide riboside k 96.2 0.0035 1.2E-07 52.9 3.9 26 167-192 19-44 (207)
145 1ukz_A Uridylate kinase; trans 96.1 0.0036 1.2E-07 52.6 3.9 26 167-192 13-38 (203)
146 1tev_A UMP-CMP kinase; ploop, 96.1 0.0032 1.1E-07 52.3 3.5 24 169-192 3-26 (196)
147 1kht_A Adenylate kinase; phosp 96.1 0.0028 9.7E-08 52.4 3.1 23 170-192 4-26 (192)
148 1lvg_A Guanylate kinase, GMP k 96.1 0.0023 7.8E-08 53.9 2.5 23 170-192 5-27 (198)
149 2ze6_A Isopentenyl transferase 96.1 0.0031 1.1E-07 55.2 3.5 23 170-192 2-24 (253)
150 3iij_A Coilin-interacting nucl 96.1 0.0026 8.9E-08 52.4 2.8 24 169-192 11-34 (180)
151 2c95_A Adenylate kinase 1; tra 96.1 0.0035 1.2E-07 52.2 3.6 25 168-192 8-32 (196)
152 2qor_A Guanylate kinase; phosp 96.1 0.0026 8.8E-08 53.7 2.8 25 168-192 11-35 (204)
153 1cke_A CK, MSSA, protein (cyti 96.1 0.003 1E-07 54.0 3.2 23 170-192 6-28 (227)
154 2ck3_D ATP synthase subunit be 96.1 0.019 6.4E-07 54.5 8.8 96 153-253 142-262 (482)
155 2if2_A Dephospho-COA kinase; a 96.1 0.0033 1.1E-07 52.8 3.4 21 171-191 3-23 (204)
156 2yvu_A Probable adenylyl-sulfa 96.1 0.0047 1.6E-07 51.1 4.2 27 167-193 11-37 (186)
157 3bh0_A DNAB-like replicative h 96.1 0.029 9.9E-07 50.7 9.8 52 168-222 67-118 (315)
158 3lda_A DNA repair protein RAD5 96.1 0.022 7.6E-07 53.3 9.2 86 169-255 178-284 (400)
159 2hf9_A Probable hydrogenase ni 96.1 0.0058 2E-07 52.1 4.8 27 167-193 36-62 (226)
160 2jaq_A Deoxyguanosine kinase; 96.0 0.0035 1.2E-07 52.5 3.3 22 171-192 2-23 (205)
161 1y63_A LMAJ004144AAA protein; 96.0 0.0041 1.4E-07 51.5 3.6 25 168-192 9-33 (184)
162 3umf_A Adenylate kinase; rossm 96.0 0.0043 1.5E-07 53.0 3.8 26 167-192 27-52 (217)
163 2bbw_A Adenylate kinase 4, AK4 96.0 0.0034 1.1E-07 54.7 3.2 24 169-192 27-50 (246)
164 1znw_A Guanylate kinase, GMP k 96.0 0.0034 1.2E-07 53.1 3.1 25 168-192 19-43 (207)
165 3aez_A Pantothenate kinase; tr 96.0 0.004 1.4E-07 56.4 3.7 26 167-192 88-113 (312)
166 1jjv_A Dephospho-COA kinase; P 96.0 0.0038 1.3E-07 52.6 3.4 22 170-191 3-24 (206)
167 1via_A Shikimate kinase; struc 96.0 0.0029 1E-07 51.8 2.6 22 171-192 6-27 (175)
168 3dzd_A Transcriptional regulat 96.0 0.053 1.8E-06 50.2 11.3 158 141-310 128-312 (368)
169 2jeo_A Uridine-cytidine kinase 96.0 0.0045 1.5E-07 53.9 3.8 26 167-192 23-48 (245)
170 3ney_A 55 kDa erythrocyte memb 96.0 0.0041 1.4E-07 52.2 3.3 25 168-192 18-42 (197)
171 3upu_A ATP-dependent DNA helic 96.0 0.013 4.3E-07 56.1 7.2 23 171-193 47-69 (459)
172 2plr_A DTMP kinase, probable t 96.0 0.0046 1.6E-07 52.1 3.7 24 170-193 5-28 (213)
173 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0069 2.4E-07 55.5 5.0 44 147-192 4-47 (359)
174 3cm0_A Adenylate kinase; ATP-b 95.9 0.0045 1.5E-07 51.1 3.5 24 169-192 4-27 (186)
175 2bwj_A Adenylate kinase 5; pho 95.9 0.0042 1.4E-07 51.8 3.3 24 169-192 12-35 (199)
176 1ny5_A Transcriptional regulat 95.9 0.06 2.1E-06 50.1 11.6 131 143-283 138-281 (387)
177 1zuh_A Shikimate kinase; alpha 95.9 0.004 1.4E-07 50.6 3.1 26 167-192 5-30 (168)
178 1qf9_A UMP/CMP kinase, protein 95.9 0.005 1.7E-07 51.0 3.7 25 168-192 5-29 (194)
179 1htw_A HI0065; nucleotide-bind 95.9 0.0046 1.6E-07 50.0 3.3 24 169-192 33-56 (158)
180 2cdn_A Adenylate kinase; phosp 95.9 0.0049 1.7E-07 51.7 3.6 26 167-192 18-43 (201)
181 2wsm_A Hydrogenase expression/ 95.9 0.0059 2E-07 51.9 4.1 26 167-192 28-53 (221)
182 1xjc_A MOBB protein homolog; s 95.9 0.0046 1.6E-07 50.5 3.1 25 168-192 3-27 (169)
183 2vli_A Antibiotic resistance p 95.9 0.0033 1.1E-07 51.7 2.4 24 169-192 5-28 (183)
184 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.005 1.7E-07 54.1 3.6 24 169-192 4-27 (260)
185 1z6g_A Guanylate kinase; struc 95.9 0.0033 1.1E-07 53.7 2.4 24 169-192 23-46 (218)
186 2iyv_A Shikimate kinase, SK; t 95.9 0.0033 1.1E-07 51.9 2.3 22 171-192 4-25 (184)
187 3tlx_A Adenylate kinase 2; str 95.9 0.0063 2.1E-07 52.9 4.2 26 167-192 27-52 (243)
188 1nn5_A Similar to deoxythymidy 95.8 0.0055 1.9E-07 51.8 3.6 25 169-193 9-33 (215)
189 3fwy_A Light-independent proto 95.8 0.005 1.7E-07 55.7 3.5 27 167-193 46-72 (314)
190 1sq5_A Pantothenate kinase; P- 95.8 0.011 3.7E-07 53.4 5.7 26 167-192 78-103 (308)
191 1e6c_A Shikimate kinase; phosp 95.8 0.0039 1.3E-07 50.7 2.5 23 170-192 3-25 (173)
192 1rj9_A FTSY, signal recognitio 95.8 0.0049 1.7E-07 55.5 3.3 25 168-192 101-125 (304)
193 2wwf_A Thymidilate kinase, put 95.8 0.0056 1.9E-07 51.6 3.5 26 168-193 9-34 (212)
194 4e22_A Cytidylate kinase; P-lo 95.8 0.0051 1.7E-07 53.8 3.3 24 169-192 27-50 (252)
195 3e70_C DPA, signal recognition 95.8 0.0092 3.2E-07 54.3 5.0 26 167-192 127-152 (328)
196 2grj_A Dephospho-COA kinase; T 95.8 0.0065 2.2E-07 50.8 3.7 26 167-192 10-35 (192)
197 1s96_A Guanylate kinase, GMP k 95.8 0.0053 1.8E-07 52.5 3.2 25 168-192 15-39 (219)
198 1fx0_B ATP synthase beta chain 95.7 0.062 2.1E-06 51.2 10.7 53 170-222 166-219 (498)
199 1gtv_A TMK, thymidylate kinase 95.7 0.0034 1.2E-07 53.1 1.9 23 171-193 2-24 (214)
200 4a74_A DNA repair and recombin 95.7 0.006 2E-07 52.1 3.5 45 168-212 24-73 (231)
201 2pbr_A DTMP kinase, thymidylat 95.7 0.0057 1.9E-07 50.7 3.2 22 171-192 2-23 (195)
202 1aky_A Adenylate kinase; ATP:A 95.7 0.006 2E-07 52.0 3.3 25 168-192 3-27 (220)
203 1zd8_A GTP:AMP phosphotransfer 95.7 0.0061 2.1E-07 52.3 3.3 25 168-192 6-30 (227)
204 2pt5_A Shikimate kinase, SK; a 95.7 0.006 2.1E-07 49.4 3.2 22 171-192 2-23 (168)
205 1ixz_A ATP-dependent metallopr 95.7 0.0053 1.8E-07 53.6 3.0 149 172-341 52-221 (254)
206 2onk_A Molybdate/tungstate ABC 95.7 0.0057 2E-07 53.1 3.1 24 167-191 23-46 (240)
207 2pcj_A ABC transporter, lipopr 95.6 0.0057 2E-07 52.5 3.0 22 170-191 31-52 (224)
208 3tif_A Uncharacterized ABC tra 95.6 0.0054 1.8E-07 53.1 2.8 22 170-191 32-53 (235)
209 2ehv_A Hypothetical protein PH 95.6 0.0059 2E-07 52.8 3.1 23 169-191 30-52 (251)
210 2f6r_A COA synthase, bifunctio 95.6 0.0075 2.6E-07 53.7 3.8 25 167-191 73-97 (281)
211 2f1r_A Molybdopterin-guanine d 95.6 0.0042 1.4E-07 50.9 2.0 23 170-192 3-25 (171)
212 1zak_A Adenylate kinase; ATP:A 95.6 0.006 2.1E-07 52.1 3.1 25 168-192 4-28 (222)
213 2z0h_A DTMP kinase, thymidylat 95.6 0.0069 2.4E-07 50.4 3.3 22 171-192 2-23 (197)
214 3b9q_A Chloroplast SRP recepto 95.6 0.0073 2.5E-07 54.3 3.6 26 167-192 98-123 (302)
215 1j8m_F SRP54, signal recogniti 95.6 0.035 1.2E-06 49.7 8.1 25 169-193 98-122 (297)
216 1vht_A Dephospho-COA kinase; s 95.6 0.0082 2.8E-07 51.0 3.8 23 169-191 4-26 (218)
217 2v54_A DTMP kinase, thymidylat 95.6 0.0075 2.6E-07 50.5 3.5 24 169-192 4-27 (204)
218 3b85_A Phosphate starvation-in 95.6 0.0058 2E-07 51.8 2.7 22 170-191 23-44 (208)
219 3fb4_A Adenylate kinase; psych 95.6 0.007 2.4E-07 51.3 3.3 22 171-192 2-23 (216)
220 2i3b_A HCR-ntpase, human cance 95.6 0.0057 1.9E-07 51.0 2.6 22 171-192 3-24 (189)
221 3kl4_A SRP54, signal recogniti 95.5 0.03 1E-06 52.9 7.7 25 168-192 96-120 (433)
222 3lnc_A Guanylate kinase, GMP k 95.5 0.0043 1.5E-07 53.4 1.8 23 170-192 28-51 (231)
223 1m7g_A Adenylylsulfate kinase; 95.5 0.0086 2.9E-07 50.7 3.7 26 167-192 23-48 (211)
224 2pez_A Bifunctional 3'-phospho 95.5 0.0088 3E-07 49.1 3.6 25 168-192 4-28 (179)
225 3dl0_A Adenylate kinase; phosp 95.5 0.0079 2.7E-07 51.0 3.3 22 171-192 2-23 (216)
226 1tue_A Replication protein E1; 95.4 0.012 4E-07 49.5 4.1 37 151-192 45-81 (212)
227 3gfo_A Cobalt import ATP-bindi 95.4 0.007 2.4E-07 53.7 2.8 22 170-191 35-56 (275)
228 2cbz_A Multidrug resistance-as 95.4 0.0072 2.5E-07 52.3 2.8 23 170-192 32-54 (237)
229 1b0u_A Histidine permease; ABC 95.4 0.0071 2.4E-07 53.2 2.8 23 169-191 32-54 (262)
230 1q57_A DNA primase/helicase; d 95.4 0.072 2.5E-06 51.4 10.1 51 168-220 241-291 (503)
231 1iy2_A ATP-dependent metallopr 95.4 0.0076 2.6E-07 53.4 3.0 149 172-341 76-245 (278)
232 3r20_A Cytidylate kinase; stru 95.4 0.0088 3E-07 51.6 3.2 25 168-192 8-32 (233)
233 1np6_A Molybdopterin-guanine d 95.3 0.0093 3.2E-07 49.0 3.1 25 168-192 5-29 (174)
234 2ffh_A Protein (FFH); SRP54, s 95.3 0.065 2.2E-06 50.4 9.3 24 169-192 98-121 (425)
235 2d2e_A SUFC protein; ABC-ATPas 95.3 0.0087 3E-07 52.3 3.1 22 170-191 30-51 (250)
236 1ji0_A ABC transporter; ATP bi 95.3 0.0078 2.7E-07 52.2 2.8 22 170-191 33-54 (240)
237 3p32_A Probable GTPase RV1496/ 95.3 0.016 5.6E-07 53.3 5.1 38 151-192 65-102 (355)
238 2ged_A SR-beta, signal recogni 95.3 0.014 4.7E-07 48.2 4.2 25 168-192 47-71 (193)
239 1g6h_A High-affinity branched- 95.3 0.0079 2.7E-07 52.8 2.8 22 170-191 34-55 (257)
240 4g1u_C Hemin import ATP-bindin 95.3 0.0079 2.7E-07 53.1 2.8 22 170-191 38-59 (266)
241 1mv5_A LMRA, multidrug resista 95.3 0.0088 3E-07 52.0 3.0 23 169-191 28-50 (243)
242 3ake_A Cytidylate kinase; CMP 95.3 0.0097 3.3E-07 49.9 3.2 22 171-192 4-25 (208)
243 2og2_A Putative signal recogni 95.3 0.011 3.6E-07 54.5 3.7 26 167-192 155-180 (359)
244 2olj_A Amino acid ABC transpor 95.3 0.0083 2.8E-07 52.8 2.8 23 169-191 50-72 (263)
245 1g5t_A COB(I)alamin adenosyltr 95.3 0.027 9.2E-07 47.0 5.7 113 170-285 29-164 (196)
246 2zu0_C Probable ATP-dependent 95.3 0.0094 3.2E-07 52.6 3.1 22 170-191 47-68 (267)
247 2xxa_A Signal recognition part 95.3 0.076 2.6E-06 50.2 9.6 27 167-193 98-124 (433)
248 2pze_A Cystic fibrosis transme 95.3 0.0086 2.9E-07 51.6 2.8 23 170-192 35-57 (229)
249 3nwj_A ATSK2; P loop, shikimat 95.2 0.0078 2.7E-07 52.6 2.5 23 170-192 49-71 (250)
250 3d3q_A TRNA delta(2)-isopenten 95.2 0.011 3.6E-07 54.0 3.5 23 170-192 8-30 (340)
251 1vma_A Cell division protein F 95.2 0.011 3.8E-07 53.2 3.6 27 167-193 102-128 (306)
252 1sgw_A Putative ABC transporte 95.2 0.0072 2.5E-07 51.5 2.2 23 170-192 36-58 (214)
253 2ff7_A Alpha-hemolysin translo 95.2 0.0087 3E-07 52.2 2.8 22 170-191 36-57 (247)
254 1g41_A Heat shock protein HSLU 95.2 0.011 3.9E-07 55.8 3.7 51 142-192 15-73 (444)
255 3l0o_A Transcription terminati 95.2 0.005 1.7E-07 56.9 1.2 54 152-210 163-217 (427)
256 1vpl_A ABC transporter, ATP-bi 95.2 0.009 3.1E-07 52.4 2.8 22 170-191 42-63 (256)
257 3vr4_D V-type sodium ATPase su 95.2 0.029 1E-06 52.9 6.3 81 172-253 154-257 (465)
258 2eyu_A Twitching motility prot 95.2 0.012 4E-07 51.8 3.4 25 168-192 24-48 (261)
259 2ixe_A Antigen peptide transpo 95.2 0.0094 3.2E-07 52.7 2.8 22 170-191 46-67 (271)
260 2ghi_A Transport protein; mult 95.1 0.0095 3.3E-07 52.4 2.8 22 170-191 47-68 (260)
261 3a8t_A Adenylate isopentenyltr 95.1 0.013 4.5E-07 53.2 3.8 25 168-192 39-63 (339)
262 3exa_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 52.6 3.7 24 169-192 3-26 (322)
263 1oix_A RAS-related protein RAB 95.1 0.012 4.2E-07 48.7 3.4 24 169-192 29-52 (191)
264 2j37_W Signal recognition part 95.1 0.17 5.8E-06 48.7 11.7 26 167-192 99-124 (504)
265 2qi9_C Vitamin B12 import ATP- 95.1 0.0098 3.4E-07 51.9 2.8 23 170-192 27-49 (249)
266 1a7j_A Phosphoribulokinase; tr 95.1 0.0072 2.4E-07 54.1 2.0 25 168-192 4-28 (290)
267 3sr0_A Adenylate kinase; phosp 95.1 0.012 4.2E-07 49.7 3.3 22 171-192 2-23 (206)
268 3be4_A Adenylate kinase; malar 95.1 0.013 4.4E-07 49.8 3.4 23 170-192 6-28 (217)
269 1e4v_A Adenylate kinase; trans 95.1 0.013 4.4E-07 49.6 3.4 22 171-192 2-23 (214)
270 2xb4_A Adenylate kinase; ATP-b 95.1 0.012 4.2E-07 50.3 3.3 22 171-192 2-23 (223)
271 2yz2_A Putative ABC transporte 95.1 0.01 3.5E-07 52.4 2.8 22 170-191 34-55 (266)
272 2nq2_C Hypothetical ABC transp 95.1 0.01 3.5E-07 51.9 2.7 23 170-192 32-54 (253)
273 2ihy_A ABC transporter, ATP-bi 95.1 0.01 3.6E-07 52.7 2.8 22 170-191 48-69 (279)
274 2dr3_A UPF0273 protein PH0284; 95.0 0.019 6.3E-07 49.5 4.4 39 169-208 23-61 (247)
275 3crm_A TRNA delta(2)-isopenten 95.0 0.013 4.5E-07 53.0 3.5 24 169-192 5-28 (323)
276 1pzn_A RAD51, DNA repair and r 95.0 0.032 1.1E-06 51.2 6.2 48 167-214 129-181 (349)
277 1ak2_A Adenylate kinase isoenz 95.0 0.014 4.7E-07 50.3 3.5 25 168-192 15-39 (233)
278 3e1s_A Exodeoxyribonuclease V, 95.0 0.044 1.5E-06 53.8 7.5 99 170-280 205-312 (574)
279 3cmu_A Protein RECA, recombina 95.0 0.04 1.4E-06 61.1 7.7 82 167-254 1425-1515(2050)
280 3foz_A TRNA delta(2)-isopenten 95.0 0.017 5.9E-07 51.8 4.0 26 167-192 8-33 (316)
281 2v9p_A Replication protein E1; 95.0 0.012 4.2E-07 52.8 3.1 25 168-192 125-149 (305)
282 1yrb_A ATP(GTP)binding protein 95.0 0.015 5.1E-07 50.8 3.5 26 167-192 12-37 (262)
283 3sop_A Neuronal-specific septi 95.0 0.014 4.7E-07 51.6 3.3 22 171-192 4-25 (270)
284 3lv8_A DTMP kinase, thymidylat 94.9 0.042 1.4E-06 47.4 6.3 37 169-205 27-63 (236)
285 1ltq_A Polynucleotide kinase; 94.9 0.014 5E-07 52.1 3.5 23 170-192 3-25 (301)
286 2wji_A Ferrous iron transport 94.9 0.016 5.4E-07 46.7 3.4 23 170-192 4-26 (165)
287 3k1j_A LON protease, ATP-depen 94.9 0.019 6.6E-07 56.8 4.6 42 143-192 42-83 (604)
288 2yhs_A FTSY, cell division pro 94.9 0.016 5.4E-07 55.5 3.7 26 167-192 291-316 (503)
289 4eaq_A DTMP kinase, thymidylat 94.9 0.034 1.1E-06 47.8 5.5 26 168-193 25-50 (229)
290 1zu4_A FTSY; GTPase, signal re 94.9 0.016 5.5E-07 52.5 3.6 26 167-192 103-128 (320)
291 2f9l_A RAB11B, member RAS onco 94.9 0.014 4.7E-07 48.7 2.9 24 169-192 5-28 (199)
292 3zvl_A Bifunctional polynucleo 94.8 0.014 4.9E-07 55.0 3.3 26 167-192 256-281 (416)
293 1nlf_A Regulatory protein REPA 94.8 0.014 4.9E-07 51.7 3.0 24 169-192 30-53 (279)
294 2vp4_A Deoxynucleoside kinase; 94.8 0.014 4.7E-07 50.2 2.8 26 167-192 18-43 (230)
295 2r9v_A ATP synthase subunit al 94.8 0.048 1.7E-06 52.1 6.7 80 171-253 177-276 (515)
296 2zej_A Dardarin, leucine-rich 94.8 0.012 4.2E-07 48.3 2.4 22 171-192 4-25 (184)
297 2pjz_A Hypothetical protein ST 94.8 0.014 4.7E-07 51.4 2.8 22 170-191 31-52 (263)
298 2dyk_A GTP-binding protein; GT 94.8 0.019 6.5E-07 45.6 3.4 23 170-192 2-24 (161)
299 2ce2_X GTPase HRAS; signaling 94.8 0.017 5.7E-07 46.0 3.1 23 171-193 5-27 (166)
300 2qe7_A ATP synthase subunit al 94.8 0.046 1.6E-06 52.1 6.5 80 171-253 164-263 (502)
301 3fvq_A Fe(3+) IONS import ATP- 94.7 0.016 5.5E-07 53.3 3.3 22 170-191 31-52 (359)
302 4tmk_A Protein (thymidylate ki 94.7 0.052 1.8E-06 46.0 6.2 52 170-221 4-55 (213)
303 1q3t_A Cytidylate kinase; nucl 94.7 0.019 6.3E-07 49.5 3.4 26 167-192 14-39 (236)
304 1nij_A Hypothetical protein YJ 94.7 0.018 6.1E-07 52.2 3.4 25 168-192 3-27 (318)
305 3nh6_A ATP-binding cassette SU 94.7 0.012 4.1E-07 53.0 2.2 23 169-191 80-102 (306)
306 2bbs_A Cystic fibrosis transme 94.6 0.016 5.6E-07 51.7 3.0 23 170-192 65-87 (290)
307 1svm_A Large T antigen; AAA+ f 94.6 0.019 6.4E-07 53.3 3.4 26 167-192 167-192 (377)
308 2wjg_A FEOB, ferrous iron tran 94.6 0.022 7.6E-07 46.6 3.6 25 168-192 6-30 (188)
309 3bgw_A DNAB-like replicative h 94.6 0.14 4.9E-06 48.5 9.5 49 168-220 196-245 (444)
310 3kta_A Chromosome segregation 94.6 0.021 7.1E-07 46.8 3.3 23 170-192 27-49 (182)
311 1z2a_A RAS-related protein RAB 94.6 0.018 6.3E-07 46.0 2.9 25 169-193 5-29 (168)
312 3end_A Light-independent proto 94.5 0.021 7.2E-07 51.3 3.5 27 167-193 39-65 (307)
313 2ocp_A DGK, deoxyguanosine kin 94.5 0.025 8.5E-07 48.9 3.8 24 169-192 2-25 (241)
314 1ls1_A Signal recognition part 94.5 0.021 7.3E-07 51.1 3.5 25 169-193 98-122 (295)
315 2qmh_A HPR kinase/phosphorylas 94.5 0.022 7.5E-07 47.6 3.2 23 170-192 35-57 (205)
316 3vkw_A Replicase large subunit 94.5 0.25 8.6E-06 46.5 10.8 100 167-281 159-267 (446)
317 3ld9_A DTMP kinase, thymidylat 94.5 0.066 2.2E-06 45.7 6.3 27 167-193 19-45 (223)
318 3tui_C Methionine import ATP-b 94.5 0.019 6.6E-07 52.8 3.1 22 170-191 55-76 (366)
319 1tq4_A IIGP1, interferon-induc 94.5 0.019 6.5E-07 53.9 3.1 24 168-191 68-91 (413)
320 1z47_A CYSA, putative ABC-tran 94.5 0.019 6.7E-07 52.7 3.1 22 170-191 42-63 (355)
321 2lkc_A Translation initiation 94.4 0.031 1.1E-06 45.2 4.0 27 167-193 6-32 (178)
322 3rlf_A Maltose/maltodextrin im 94.4 0.021 7.2E-07 52.9 3.1 22 170-191 30-51 (381)
323 2yyz_A Sugar ABC transporter, 94.4 0.021 7.3E-07 52.5 3.1 22 170-191 30-51 (359)
324 3con_A GTPase NRAS; structural 94.3 0.022 7.5E-07 46.8 2.9 24 170-193 22-45 (190)
325 1u8z_A RAS-related protein RAL 94.3 0.023 7.7E-07 45.3 2.9 25 169-193 4-28 (168)
326 1u0j_A DNA replication protein 94.3 0.047 1.6E-06 47.9 5.1 37 152-192 91-127 (267)
327 2it1_A 362AA long hypothetical 94.3 0.022 7.6E-07 52.5 3.1 22 170-191 30-51 (362)
328 2gj8_A MNME, tRNA modification 94.3 0.024 8.1E-07 46.1 3.0 23 170-192 5-27 (172)
329 2zts_A Putative uncharacterize 94.3 0.055 1.9E-06 46.5 5.5 49 169-219 30-78 (251)
330 2qm8_A GTPase/ATPase; G protei 94.3 0.046 1.6E-06 49.9 5.2 26 167-192 53-78 (337)
331 3cmu_A Protein RECA, recombina 94.3 0.09 3.1E-06 58.4 8.2 83 168-256 382-473 (2050)
332 1g29_1 MALK, maltose transport 94.3 0.023 7.8E-07 52.6 3.1 22 170-191 30-51 (372)
333 1xx6_A Thymidine kinase; NESG, 94.3 0.013 4.4E-07 48.9 1.3 108 169-284 8-118 (191)
334 3d31_A Sulfate/molybdate ABC t 94.2 0.019 6.6E-07 52.6 2.6 22 170-191 27-48 (348)
335 1svi_A GTP-binding protein YSX 94.2 0.028 9.7E-07 46.3 3.4 26 167-192 21-46 (195)
336 3eph_A TRNA isopentenyltransfe 94.2 0.03 1E-06 52.2 3.8 23 170-192 3-25 (409)
337 1v43_A Sugar-binding transport 94.2 0.023 8E-07 52.5 3.1 22 170-191 38-59 (372)
338 3gqb_B V-type ATP synthase bet 94.2 0.063 2.1E-06 50.7 6.0 83 171-253 149-260 (464)
339 1kao_A RAP2A; GTP-binding prot 94.2 0.025 8.4E-07 45.0 2.9 23 171-193 5-27 (167)
340 4edh_A DTMP kinase, thymidylat 94.2 0.084 2.9E-06 44.7 6.4 25 169-193 6-30 (213)
341 2erx_A GTP-binding protein DI- 94.2 0.025 8.4E-07 45.4 2.9 23 170-192 4-26 (172)
342 1z08_A RAS-related protein RAB 94.2 0.025 8.5E-07 45.4 2.9 25 169-193 6-30 (170)
343 1m7b_A RND3/RHOE small GTP-bin 94.2 0.026 9E-07 46.2 3.1 26 168-193 6-31 (184)
344 2r8r_A Sensor protein; KDPD, P 94.2 0.032 1.1E-06 47.6 3.6 105 170-284 7-127 (228)
345 1c1y_A RAS-related protein RAP 94.2 0.025 8.6E-07 45.1 2.9 23 171-193 5-27 (167)
346 1ek0_A Protein (GTP-binding pr 94.2 0.025 8.7E-07 45.2 2.9 23 171-193 5-27 (170)
347 1z0j_A RAB-22, RAS-related pro 94.2 0.025 8.7E-07 45.2 2.9 24 170-193 7-30 (170)
348 2v3c_C SRP54, signal recogniti 94.1 0.019 6.6E-07 54.3 2.4 25 168-192 98-122 (432)
349 1lw7_A Transcriptional regulat 94.1 0.025 8.6E-07 52.2 3.1 24 169-192 170-193 (365)
350 3q72_A GTP-binding protein RAD 94.1 0.026 8.8E-07 45.1 2.9 22 171-192 4-25 (166)
351 2nzj_A GTP-binding protein REM 94.1 0.032 1.1E-06 44.9 3.4 26 168-193 3-28 (175)
352 2fn4_A P23, RAS-related protei 94.1 0.038 1.3E-06 44.7 3.9 27 167-193 7-33 (181)
353 1r8s_A ADP-ribosylation factor 94.1 0.028 9.5E-07 44.8 3.0 22 172-193 3-24 (164)
354 1g16_A RAS-related protein SEC 94.1 0.028 9.6E-07 45.0 3.1 24 170-193 4-27 (170)
355 3cmw_A Protein RECA, recombina 94.1 0.074 2.5E-06 58.3 7.1 83 168-256 382-473 (1706)
356 3pqc_A Probable GTP-binding pr 94.1 0.034 1.2E-06 45.7 3.6 25 168-192 22-46 (195)
357 2yv5_A YJEQ protein; hydrolase 94.1 0.038 1.3E-06 49.6 4.1 33 150-192 155-187 (302)
358 3cmw_A Protein RECA, recombina 94.1 0.077 2.6E-06 58.2 7.1 83 168-256 731-822 (1706)
359 2www_A Methylmalonic aciduria 94.1 0.033 1.1E-06 51.1 3.7 26 167-192 72-97 (349)
360 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.028 9.5E-07 45.4 2.9 26 168-193 6-31 (177)
361 3gd7_A Fusion complex of cysti 94.0 0.028 9.7E-07 52.3 3.3 22 170-191 48-69 (390)
362 1nrj_B SR-beta, signal recogni 94.0 0.032 1.1E-06 47.0 3.4 27 167-193 10-36 (218)
363 2p67_A LAO/AO transport system 94.0 0.057 1.9E-06 49.4 5.3 26 167-192 54-79 (341)
364 1fzq_A ADP-ribosylation factor 94.0 0.031 1.1E-06 45.7 3.2 25 168-192 15-39 (181)
365 3ihw_A Centg3; RAS, centaurin, 94.0 0.028 9.6E-07 46.2 2.9 26 168-193 19-44 (184)
366 2hxs_A RAB-26, RAS-related pro 94.0 0.031 1.1E-06 45.2 3.2 25 168-192 5-29 (178)
367 1cp2_A CP2, nitrogenase iron p 94.0 0.033 1.1E-06 48.8 3.5 24 170-193 2-25 (269)
368 1oxx_K GLCV, glucose, ABC tran 94.0 0.018 6.2E-07 52.9 1.8 22 170-191 32-53 (353)
369 2j9r_A Thymidine kinase; TK1, 94.0 0.039 1.3E-06 46.7 3.7 105 169-283 28-137 (214)
370 2qnr_A Septin-2, protein NEDD5 94.0 0.027 9.1E-07 50.6 2.9 22 171-192 20-41 (301)
371 2ck3_A ATP synthase subunit al 94.0 0.071 2.4E-06 50.9 5.9 50 171-221 164-222 (510)
372 2cxx_A Probable GTP-binding pr 94.0 0.029 9.8E-07 46.0 2.9 23 171-193 3-25 (190)
373 3llm_A ATP-dependent RNA helic 94.0 0.14 4.8E-06 43.8 7.4 99 149-255 64-187 (235)
374 1w36_D RECD, exodeoxyribonucle 93.9 0.14 4.8E-06 50.7 8.3 46 170-215 165-212 (608)
375 1ky3_A GTP-binding protein YPT 93.9 0.037 1.3E-06 44.8 3.5 27 167-193 6-32 (182)
376 3t1o_A Gliding protein MGLA; G 93.9 0.03 1E-06 46.0 3.0 24 169-192 14-37 (198)
377 1m2o_B GTP-binding protein SAR 93.9 0.031 1.1E-06 46.1 3.1 23 170-192 24-46 (190)
378 1r2q_A RAS-related protein RAB 93.9 0.031 1E-06 44.7 2.9 23 170-192 7-29 (170)
379 2bme_A RAB4A, RAS-related prot 93.9 0.033 1.1E-06 45.5 3.1 26 168-193 9-34 (186)
380 2c61_A A-type ATP synthase non 93.9 0.065 2.2E-06 50.8 5.4 83 171-253 154-258 (469)
381 1p9r_A General secretion pathw 93.9 0.06 2E-06 50.6 5.2 24 169-192 167-190 (418)
382 2y8e_A RAB-protein 6, GH09086P 93.9 0.033 1.1E-06 44.9 3.1 24 170-193 15-38 (179)
383 2ewv_A Twitching motility prot 93.9 0.036 1.2E-06 51.4 3.6 25 168-192 135-159 (372)
384 2aka_B Dynamin-1; fusion prote 93.9 0.079 2.7E-06 47.1 5.8 27 167-193 24-50 (299)
385 3c5c_A RAS-like protein 12; GD 93.9 0.031 1.1E-06 46.0 2.9 25 169-193 21-45 (187)
386 1zj6_A ADP-ribosylation factor 93.9 0.071 2.4E-06 43.6 5.1 25 168-192 15-39 (187)
387 1pui_A ENGB, probable GTP-bind 93.9 0.023 7.7E-07 47.6 2.1 25 168-192 25-49 (210)
388 4dsu_A GTPase KRAS, isoform 2B 93.8 0.032 1.1E-06 45.6 2.9 24 170-193 5-28 (189)
389 2qtf_A Protein HFLX, GTP-bindi 93.8 0.051 1.7E-06 50.2 4.6 27 167-193 177-203 (364)
390 1z0f_A RAB14, member RAS oncog 93.8 0.033 1.1E-06 45.0 2.9 26 168-193 14-39 (179)
391 1p5z_B DCK, deoxycytidine kina 93.8 0.023 7.9E-07 49.8 2.1 26 167-192 22-47 (263)
392 3kkq_A RAS-related protein M-R 93.8 0.033 1.1E-06 45.4 2.9 26 168-193 17-42 (183)
393 3q85_A GTP-binding protein REM 93.7 0.041 1.4E-06 44.0 3.4 22 170-191 3-24 (169)
394 3bc1_A RAS-related protein RAB 93.7 0.034 1.2E-06 45.5 2.9 26 168-193 10-35 (195)
395 3t5g_A GTP-binding protein RHE 93.7 0.037 1.3E-06 45.0 3.1 25 168-192 5-29 (181)
396 2h92_A Cytidylate kinase; ross 93.7 0.029 1E-06 47.5 2.6 23 170-192 4-26 (219)
397 2afh_E Nitrogenase iron protei 93.7 0.043 1.5E-06 48.8 3.7 25 169-193 2-26 (289)
398 2obl_A ESCN; ATPase, hydrolase 93.7 0.038 1.3E-06 50.7 3.4 23 170-192 72-94 (347)
399 2iwr_A Centaurin gamma 1; ANK 93.7 0.027 9.4E-07 45.6 2.2 25 169-193 7-31 (178)
400 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.035 1.2E-06 45.1 2.9 24 170-193 6-29 (186)
401 3tw8_B RAS-related protein RAB 93.7 0.027 9.3E-07 45.6 2.2 26 167-192 7-32 (181)
402 2a9k_A RAS-related protein RAL 93.7 0.036 1.2E-06 45.1 2.9 26 168-193 17-42 (187)
403 1upt_A ARL1, ADP-ribosylation 93.7 0.047 1.6E-06 43.7 3.6 26 168-193 6-31 (171)
404 2gza_A Type IV secretion syste 93.7 0.03 1E-06 51.7 2.7 23 170-192 176-198 (361)
405 1g8f_A Sulfate adenylyltransfe 93.6 0.041 1.4E-06 53.1 3.6 48 142-193 372-419 (511)
406 2efe_B Small GTP-binding prote 93.6 0.036 1.2E-06 44.9 2.9 25 169-193 12-36 (181)
407 2oil_A CATX-8, RAS-related pro 93.6 0.035 1.2E-06 45.7 2.9 26 168-193 24-49 (193)
408 3dz8_A RAS-related protein RAB 93.6 0.04 1.4E-06 45.3 3.2 24 170-193 24-47 (191)
409 3bwd_D RAC-like GTP-binding pr 93.6 0.037 1.3E-06 44.9 2.9 24 170-193 9-32 (182)
410 2bov_A RAla, RAS-related prote 93.6 0.037 1.3E-06 46.0 2.9 26 168-193 13-38 (206)
411 2fg5_A RAB-22B, RAS-related pr 93.6 0.04 1.4E-06 45.5 3.1 25 169-193 23-47 (192)
412 2g6b_A RAS-related protein RAB 93.6 0.038 1.3E-06 44.7 2.9 26 168-193 9-34 (180)
413 1f6b_A SAR1; gtpases, N-termin 93.5 0.05 1.7E-06 45.2 3.7 23 170-192 26-48 (198)
414 1vg8_A RAS-related protein RAB 93.5 0.038 1.3E-06 46.0 2.9 27 167-193 6-32 (207)
415 1gwn_A RHO-related GTP-binding 93.5 0.041 1.4E-06 46.2 3.1 26 168-193 27-52 (205)
416 2atv_A RERG, RAS-like estrogen 93.5 0.039 1.3E-06 45.7 2.9 25 169-193 28-52 (196)
417 2cjw_A GTP-binding protein GEM 93.5 0.04 1.4E-06 45.7 3.0 23 169-191 6-28 (192)
418 3iev_A GTP-binding protein ERA 93.5 0.041 1.4E-06 49.5 3.3 27 167-193 8-34 (308)
419 3cbq_A GTP-binding protein REM 93.5 0.03 1E-06 46.5 2.2 25 167-191 21-45 (195)
420 1u0l_A Probable GTPase ENGC; p 93.5 0.055 1.9E-06 48.5 4.1 34 150-192 159-192 (301)
421 2ew1_A RAS-related protein RAB 93.5 0.042 1.4E-06 46.0 3.1 26 168-193 25-50 (201)
422 3oes_A GTPase rhebl1; small GT 93.5 0.042 1.4E-06 45.7 3.1 26 168-193 23-48 (201)
423 3f9v_A Minichromosome maintena 93.5 0.018 6.1E-07 56.9 0.9 52 141-192 294-350 (595)
424 1ega_A Protein (GTP-binding pr 93.4 0.042 1.4E-06 49.3 3.2 26 168-193 7-32 (301)
425 3clv_A RAB5 protein, putative; 93.4 0.04 1.4E-06 45.5 2.9 25 169-193 7-31 (208)
426 3gmt_A Adenylate kinase; ssgci 93.4 0.042 1.4E-06 47.1 3.0 25 168-192 7-31 (230)
427 3v9p_A DTMP kinase, thymidylat 93.4 0.089 3E-06 45.1 5.1 25 169-193 25-49 (227)
428 1fx0_A ATP synthase alpha chai 93.4 0.048 1.6E-06 52.1 3.6 49 170-221 164-215 (507)
429 2axn_A 6-phosphofructo-2-kinas 93.4 0.049 1.7E-06 52.8 3.8 26 167-192 33-58 (520)
430 3llu_A RAS-related GTP-binding 93.4 0.04 1.4E-06 45.6 2.9 25 168-192 19-43 (196)
431 2xau_A PRE-mRNA-splicing facto 93.4 0.53 1.8E-05 47.9 11.6 99 149-255 97-219 (773)
432 3cr8_A Sulfate adenylyltranfer 93.4 0.038 1.3E-06 53.9 3.0 26 168-193 368-393 (552)
433 2gf0_A GTP-binding protein DI- 93.4 0.046 1.6E-06 45.1 3.1 24 169-192 8-31 (199)
434 1zbd_A Rabphilin-3A; G protein 93.3 0.041 1.4E-06 45.7 2.8 25 169-193 8-32 (203)
435 2gf9_A RAS-related protein RAB 93.3 0.043 1.5E-06 45.0 2.9 25 169-193 22-46 (189)
436 2qag_B Septin-6, protein NEDD5 93.3 0.038 1.3E-06 51.9 2.8 21 172-192 45-65 (427)
437 1zd9_A ADP-ribosylation factor 93.3 0.044 1.5E-06 45.0 2.9 25 169-193 22-46 (188)
438 2pt7_A CAG-ALFA; ATPase, prote 93.3 0.031 1.1E-06 50.8 2.1 23 170-192 172-194 (330)
439 2npi_A Protein CLP1; CLP1-PCF1 93.3 0.038 1.3E-06 52.7 2.8 23 170-192 139-161 (460)
440 3tkl_A RAS-related protein RAB 93.3 0.045 1.5E-06 45.1 2.9 26 168-193 15-40 (196)
441 2fh5_B SR-beta, signal recogni 93.3 0.044 1.5E-06 46.0 2.9 26 168-193 6-31 (214)
442 3reg_A RHO-like small GTPase; 93.3 0.045 1.5E-06 45.2 2.9 25 169-193 23-47 (194)
443 3mfy_A V-type ATP synthase alp 93.3 0.19 6.6E-06 48.5 7.5 59 153-219 216-275 (588)
444 2h17_A ADP-ribosylation factor 93.3 0.047 1.6E-06 44.5 3.0 25 168-192 20-44 (181)
445 2rcn_A Probable GTPase ENGC; Y 93.3 0.045 1.5E-06 50.3 3.1 23 170-192 216-238 (358)
446 4bas_A ADP-ribosylation factor 93.2 0.044 1.5E-06 45.2 2.8 27 167-193 15-41 (199)
447 2o52_A RAS-related protein RAB 93.2 0.045 1.5E-06 45.5 2.9 25 168-192 24-48 (200)
448 2a5j_A RAS-related protein RAB 93.2 0.045 1.5E-06 45.1 2.9 25 169-193 21-45 (191)
449 2qu8_A Putative nucleolar GTP- 93.2 0.056 1.9E-06 46.0 3.5 26 168-193 28-53 (228)
450 2bcg_Y Protein YP2, GTP-bindin 93.2 0.048 1.6E-06 45.5 3.1 26 168-193 7-32 (206)
451 3fdi_A Uncharacterized protein 93.2 0.056 1.9E-06 45.4 3.4 25 169-193 6-30 (201)
452 2fz4_A DNA repair protein RAD2 93.2 0.29 9.9E-06 42.0 8.1 99 172-282 111-227 (237)
453 3k53_A Ferrous iron transport 93.2 0.06 2E-06 47.4 3.7 24 169-192 3-26 (271)
454 1z06_A RAS-related protein RAB 93.2 0.048 1.6E-06 44.7 2.9 26 168-193 19-44 (189)
455 3lxx_A GTPase IMAP family memb 93.2 0.056 1.9E-06 46.4 3.5 27 167-193 27-53 (239)
456 1f2t_A RAD50 ABC-ATPase; DNA d 93.1 0.065 2.2E-06 42.6 3.5 23 169-191 23-45 (149)
457 1x3s_A RAS-related protein RAB 93.1 0.049 1.7E-06 44.7 2.9 24 170-193 16-39 (195)
458 2p5s_A RAS and EF-hand domain 93.1 0.047 1.6E-06 45.3 2.8 25 168-192 27-51 (199)
459 2q3h_A RAS homolog gene family 93.1 0.046 1.6E-06 45.3 2.7 26 168-193 19-44 (201)
460 3thx_A DNA mismatch repair pro 93.1 0.17 5.8E-06 52.5 7.4 21 169-189 662-682 (934)
461 2fv8_A H6, RHO-related GTP-bin 93.0 0.053 1.8E-06 45.3 3.1 24 170-193 26-49 (207)
462 2j1l_A RHO-related GTP-binding 93.0 0.05 1.7E-06 45.9 2.9 24 169-192 34-57 (214)
463 4gzl_A RAS-related C3 botulinu 93.0 0.065 2.2E-06 44.7 3.6 25 169-193 30-54 (204)
464 2atx_A Small GTP binding prote 93.0 0.055 1.9E-06 44.6 3.1 25 169-193 18-42 (194)
465 1moz_A ARL1, ADP-ribosylation 93.0 0.053 1.8E-06 44.0 2.9 24 169-192 18-41 (183)
466 3euj_A Chromosome partition pr 93.0 0.051 1.7E-06 52.0 3.1 23 170-192 30-52 (483)
467 2b6h_A ADP-ribosylation factor 93.0 0.052 1.8E-06 44.8 2.9 24 169-192 29-52 (192)
468 3oaa_A ATP synthase subunit al 92.9 0.19 6.7E-06 47.8 7.0 80 171-253 164-263 (513)
469 2hup_A RAS-related protein RAB 92.9 0.057 2E-06 45.0 3.1 26 168-193 28-53 (201)
470 1h65_A Chloroplast outer envel 92.9 0.11 3.9E-06 45.5 5.2 26 168-193 38-63 (270)
471 3hjn_A DTMP kinase, thymidylat 92.9 0.17 5.7E-06 42.2 6.0 49 171-220 2-50 (197)
472 2j0v_A RAC-like GTP-binding pr 92.9 0.057 2E-06 45.2 3.1 25 169-193 9-33 (212)
473 2dpy_A FLII, flagellum-specifi 92.9 0.058 2E-06 51.1 3.4 24 169-192 157-180 (438)
474 2g3y_A GTP-binding protein GEM 92.9 0.054 1.8E-06 45.8 2.9 23 169-191 37-59 (211)
475 1bif_A 6-phosphofructo-2-kinas 92.9 0.063 2.1E-06 51.4 3.7 25 168-192 38-62 (469)
476 3def_A T7I23.11 protein; chlor 92.9 0.11 3.7E-06 45.5 4.9 25 168-192 35-59 (262)
477 2gco_A H9, RHO-related GTP-bin 92.9 0.059 2E-06 44.8 3.1 24 170-193 26-49 (201)
478 3ch4_B Pmkase, phosphomevalona 92.9 0.089 3E-06 44.0 4.1 26 167-192 9-34 (202)
479 1ksh_A ARF-like protein 2; sma 92.9 0.062 2.1E-06 43.8 3.2 24 169-192 18-41 (186)
480 2il1_A RAB12; G-protein, GDP, 92.8 0.044 1.5E-06 45.3 2.2 24 169-192 26-49 (192)
481 4dzz_A Plasmid partitioning pr 92.8 0.11 3.8E-06 43.1 4.8 41 170-211 2-43 (206)
482 3cph_A RAS-related protein SEC 92.8 0.056 1.9E-06 45.2 2.9 26 168-193 19-44 (213)
483 3io3_A DEHA2D07832P; chaperone 92.8 0.14 4.7E-06 46.9 5.7 26 167-192 16-41 (348)
484 3vr4_A V-type sodium ATPase ca 92.8 0.23 8E-06 48.1 7.4 58 153-218 221-279 (600)
485 1jwy_B Dynamin A GTPase domain 92.8 0.12 4E-06 46.3 5.2 26 167-192 22-47 (315)
486 3ozx_A RNAse L inhibitor; ATP 92.8 0.05 1.7E-06 53.0 2.8 23 170-192 295-317 (538)
487 3iqw_A Tail-anchored protein t 92.8 0.17 5.6E-06 46.1 6.1 26 167-192 14-39 (334)
488 1mky_A Probable GTP-binding pr 92.7 0.11 3.6E-06 49.3 5.0 48 145-192 151-203 (439)
489 2h57_A ADP-ribosylation factor 92.7 0.044 1.5E-06 45.0 2.1 24 169-192 21-44 (190)
490 3kjh_A CO dehydrogenase/acetyl 92.7 0.12 4E-06 44.5 4.9 36 172-208 3-38 (254)
491 1yqt_A RNAse L inhibitor; ATP- 92.7 0.056 1.9E-06 52.6 3.1 23 170-192 313-335 (538)
492 1yqt_A RNAse L inhibitor; ATP- 92.7 0.057 1.9E-06 52.6 3.1 24 169-192 47-70 (538)
493 2fu5_C RAS-related protein RAB 92.7 0.035 1.2E-06 45.2 1.4 25 168-192 7-31 (183)
494 1ypw_A Transitional endoplasmi 92.6 0.04 1.4E-06 56.4 2.1 51 142-192 477-534 (806)
495 4dkx_A RAS-related protein RAB 92.6 0.062 2.1E-06 45.7 2.9 23 171-193 15-37 (216)
496 3q3j_B RHO-related GTP-binding 92.5 0.064 2.2E-06 45.2 2.9 24 170-193 28-51 (214)
497 2qag_C Septin-7; cell cycle, c 92.5 0.053 1.8E-06 51.0 2.6 21 172-192 34-54 (418)
498 3ozx_A RNAse L inhibitor; ATP 92.5 0.072 2.4E-06 51.9 3.5 25 168-192 24-48 (538)
499 2xtp_A GTPase IMAP family memb 92.5 0.085 2.9E-06 45.9 3.7 25 168-192 21-45 (260)
500 4b3f_X DNA-binding protein smu 92.4 0.14 4.9E-06 51.0 5.7 48 171-220 207-254 (646)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.2e-36 Score=296.30 Aligned_cols=196 Identities=17% Similarity=0.208 Sum_probs=160.2
Q ss_pred ecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHh--hh-ccccccCeEEEEecCCC--CHHHHHHHH
Q 044878 145 YGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYN--DK-LTEAFEPKAWVCVSDDF--DVLRISKAI 219 (368)
Q Consensus 145 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~--~~-~~~~F~~~~wv~vs~~~--~~~~l~~~i 219 (368)
+||+.++++|.++|..... ...++|+|+||||+||||||+++|+ +. ++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 5999999999999976432 4689999999999999999999998 44 89999999999999985 899999999
Q ss_pred HHHhccCCC-------CCCChHHHHHHHHhc---C-eeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHh
Q 044878 220 LESITLSSC-------GLTDLNSVQLKLKEA---K-KFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVAL 288 (368)
Q Consensus 220 l~~l~~~~~-------~~~~~~~l~~~l~~~---k-r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 288 (368)
+.+++.... ...+.+.+...+.+. + ||||||||||+.+...|.. .+||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHHH
Confidence 999986521 112333444444433 4 9999999999853222332 17999999999999998
Q ss_pred hcCCC-CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCC
Q 044878 289 TMGSG-KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSK 354 (368)
Q Consensus 289 ~~~~~-~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~ 354 (368)
.++.. .+|+|++|+.++||+||.+++|+... ++++++++.+|+++|+|+||||+++|+.|+.+
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~ 343 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK 343 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHHHHHHHHHHHhCCChHHHHHHHHHhccc
Confidence 87633 67999999999999999999876532 36889999999999999999999999999876
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=1.1e-28 Score=265.98 Aligned_cols=207 Identities=20% Similarity=0.320 Sum_probs=160.2
Q ss_pred CCCCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh--ccccc-cCeEEEEecCCCC--HH
Q 044878 139 GGEPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK--LTEAF-EPKAWVCVSDDFD--VL 213 (368)
Q Consensus 139 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~F-~~~~wv~vs~~~~--~~ 213 (368)
+.++.|+||++++++|.++|.... ...++|+|+||||+||||||+++|++. ...+| +.++||++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 336679999999999999997654 567999999999999999999999985 35555 5677999998543 44
Q ss_pred HHHHHHHHHhccCCC----CCCChHHHHHHHHhc-----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 214 RISKAILESITLSSC----GLTDLNSVQLKLKEA-----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 214 ~l~~~il~~l~~~~~----~~~~~~~l~~~l~~~-----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
..+..++..+..... ...+.+.+...+... +||||||||+|+. ..|..+ .+||+||||||++
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 556777777765432 234566777777643 5999999999874 344332 5789999999999
Q ss_pred HHHhh-cCCCCceeCCC-CChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHHHH
Q 044878 285 VVALT-MGSGKNYELKL-LSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQRIDEWRA 362 (368)
Q Consensus 285 ~va~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~W~~ 362 (368)
.++.. +.....+.+.+ |+.+++++||...++... +.+++++++|+++|+|+||||+++|++|+.++ ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 99854 44557899996 999999999999884322 23456688999999999999999999999874 35666
Q ss_pred HHh
Q 044878 363 ILD 365 (368)
Q Consensus 363 vl~ 365 (368)
.++
T Consensus 341 ~l~ 343 (1249)
T 3sfz_A 341 YLR 343 (1249)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=8.8e-29 Score=251.63 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=149.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccC-eEEEEecCCCCHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEP-KAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~-~~wv~vs~~~~~~~l~~~i 219 (368)
+..+||+.++++|.++|... ...++|+|+||||+||||||+++|++. ++.+|+. ++|+++++.++...++..|
T Consensus 128 k~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 34599999999999999853 246899999999999999999999876 8889996 8999999999988888888
Q ss_pred HHHhccCC---C-CC-------CChHHHHHHHHh------cCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeC
Q 044878 220 LESITLSS---C-GL-------TDLNSVQLKLKE------AKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTR 282 (368)
Q Consensus 220 l~~l~~~~---~-~~-------~~~~~l~~~l~~------~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR 282 (368)
+..+.... . .. .+.+.+...+.. .+|+||||||+|+. +.|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEecc
Confidence 77543211 1 00 112333333332 29999999999983 567654 2 6899999999
Q ss_pred ChHHHhhcCCCCceeCC------CCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCC-
Q 044878 283 SMVVALTMGSGKNYELK------LLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQ- 355 (368)
Q Consensus 283 ~~~va~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~- 355 (368)
+..++..+.....|.++ +|+.+|||+||++.. +.. . .++..+| |+|+||||+++|+.|+.+.
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~---~----eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR---P----QDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC---T----TTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC---H----HHHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 99998654433456677 999999999999983 322 1 1222333 9999999999999999984
Q ss_pred ChHHHHH
Q 044878 356 RIDEWRA 362 (368)
Q Consensus 356 ~~~~W~~ 362 (368)
+.++|..
T Consensus 343 s~eeW~~ 349 (1221)
T 1vt4_I 343 TWDNWKH 349 (1221)
T ss_dssp SHHHHHH
T ss_pred CHHHHhc
Confidence 5778975
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=232.17 Aligned_cols=205 Identities=20% Similarity=0.342 Sum_probs=150.3
Q ss_pred CCCCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-c-ccccc-CeEEEEecCCCCHHHH
Q 044878 139 GGEPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-L-TEAFE-PKAWVCVSDDFDVLRI 215 (368)
Q Consensus 139 ~~~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~-~~~F~-~~~wv~vs~~~~~~~l 215 (368)
+.++.|+||+.++++|.++|.... ...++|+|+||||+||||||+.++++. + ..+|. .++|++++.. +...+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 346789999999999999998643 457899999999999999999999885 4 78894 8999999875 33344
Q ss_pred HHHH---HHHhccCC----CCCCChHHHHHHHHh----c-CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 216 SKAI---LESITLSS----CGLTDLNSVQLKLKE----A-KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 216 ~~~i---l~~l~~~~----~~~~~~~~l~~~l~~----~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
+..+ ...++... ....+...+...+.. . +++||||||+|+. ..+. .+ .+||+||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCC
Confidence 4443 34444211 123444554444443 2 6899999999863 2332 22 468999999999
Q ss_pred hHHHhhcCCCCceeC---CCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHhcCCCChHHH
Q 044878 284 MVVALTMGSGKNYEL---KLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLLRSKQRIDEW 360 (368)
Q Consensus 284 ~~va~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~W 360 (368)
..++..+. ...+++ .+|+.+++++||...++... +...+.+.+|+++|+|+||||..+|+.|+.+. .+|
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 98876543 334444 58999999999999885421 12245678999999999999999999999874 368
Q ss_pred HHHHh
Q 044878 361 RAILD 365 (368)
Q Consensus 361 ~~vl~ 365 (368)
..+++
T Consensus 339 ~~~l~ 343 (591)
T 1z6t_A 339 EYYLK 343 (591)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.76 E-value=4e-19 Score=137.75 Aligned_cols=77 Identities=27% Similarity=0.475 Sum_probs=73.0
Q ss_pred CHHhhhccHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Q 044878 1 VLFERLMSPELLKLAGQEGVRSKLKKWEETLKTIEAVLIDAEEK--QLTDRAVKLWLDDLRDLAYDAEDILDEFATEAG 77 (368)
Q Consensus 1 ~l~~~l~~~l~~~~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~Wl~~lr~~a~d~eD~lD~~~~~~~ 77 (368)
.+++||++++.+|+.++.||++++++|+++|++|++||.+++.+ +..++.++.|+++||++|||+|||||+|.++..
T Consensus 5 ~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 5 NLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999987 568999999999999999999999999999874
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.64 E-value=5.6e-15 Score=137.35 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=128.8
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC------CHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF------DVLR 214 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~------~~~~ 214 (368)
+..++||+.+++.|.+++.. . +++.|+|++|+|||||++.+.+. . . .+|+.+.... +...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~-~----~-~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNE-R----P-GILIDCRELYAERGHITREE 76 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHH-S----S-EEEEEHHHHHHTTTCBCHHH
T ss_pred hHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHH-c----C-cEEEEeecccccccCCCHHH
Confidence 56799999999999999864 2 58999999999999999999987 3 1 5677655432 4556
Q ss_pred HHHHHHHHhcc----------------CCC--CCCChHHHHHHHHhc----CeeEEEEEcCccCCh-------hhHHHhh
Q 044878 215 ISKAILESITL----------------SSC--GLTDLNSVQLKLKEA----KKFLIVLDDVWDKKY-------ELWQALK 265 (368)
Q Consensus 215 l~~~il~~l~~----------------~~~--~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~-------~~~~~l~ 265 (368)
++..+...+.. ... ...+...+...+... ++++|||||++..+. ..+..+.
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 66666655432 000 113455555555432 489999999976421 2334444
Q ss_pred hhcCCCCCCcEEEEEeCChHH-Hhh---------c-CC-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHH
Q 044878 266 SPFMAGAPGSRIIVTTRSMVV-ALT---------M-GS-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRV 333 (368)
Q Consensus 266 ~~l~~~~~gs~IivTtR~~~v-a~~---------~-~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I 333 (368)
..+.. ..+.++|+|++.... ... . +. ...+++.||+.+++.+++....-..... . -.+....|
T Consensus 157 ~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~---~~~~~~~i 231 (350)
T 2qen_A 157 YAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-V---PENEIEEA 231 (350)
T ss_dssp HHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-C---CHHHHHHH
T ss_pred HHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-C---CHHHHHHH
Confidence 33322 247789999987653 221 0 11 1368999999999999987753211111 1 13456789
Q ss_pred HHHcCCChHHHHHHHHHhc
Q 044878 334 VEKRKGLPLAARALGGLLR 352 (368)
Q Consensus 334 ~~~c~GlPLai~~~~~~L~ 352 (368)
+..|+|+|+++..++..+.
T Consensus 232 ~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 232 VELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHh
Confidence 9999999999999987653
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=1.5e-14 Score=134.73 Aligned_cols=192 Identities=15% Similarity=0.179 Sum_probs=126.2
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-----CCHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-----FDVLRI 215 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-----~~~~~l 215 (368)
+..++||+++++.|.+ +. . +++.|+|++|+|||||++.+.+. ... ..+|+.+... .+...+
T Consensus 12 ~~~~~gR~~el~~L~~-l~-------~--~~v~i~G~~G~GKT~L~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LR-------A--PITLVLGLRRTGKSSIIKIGINE-LNL---PYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TC-------S--SEEEEEESTTSSHHHHHHHHHHH-HTC---CEEEEEGGGGTTCSCCCHHHH
T ss_pred HHHhcChHHHHHHHHH-hc-------C--CcEEEECCCCCCHHHHHHHHHHh-cCC---CEEEEEchhhccccCCCHHHH
Confidence 5679999999999999 63 2 58999999999999999999987 322 2578876642 234445
Q ss_pred HHHHHHHhcc--------------------CC---------CCCCChHHHHHHHHhc--CeeEEEEEcCccCC----hhh
Q 044878 216 SKAILESITL--------------------SS---------CGLTDLNSVQLKLKEA--KKFLIVLDDVWDKK----YEL 260 (368)
Q Consensus 216 ~~~il~~l~~--------------------~~---------~~~~~~~~l~~~l~~~--kr~LlVlDdvw~~~----~~~ 260 (368)
+..+...+.. .. ........+...+.+. ++++|||||++..+ .+.
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhH
Confidence 4444443310 00 0123566677777664 48999999997632 123
Q ss_pred HHHhhhhcCCCCCCcEEEEEeCChHHHh-h---------cC-C-CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHH
Q 044878 261 WQALKSPFMAGAPGSRIIVTTRSMVVAL-T---------MG-S-GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFES 328 (368)
Q Consensus 261 ~~~l~~~l~~~~~gs~IivTtR~~~va~-~---------~~-~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~ 328 (368)
+..+..... ...+.++|+|++...... . .. . ...+++.||+.+++.+++....-.... .. ...
T Consensus 158 ~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~-~~~-- 232 (357)
T 2fna_A 158 LPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DF-KDY-- 232 (357)
T ss_dssp HHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CC-CCH--
T ss_pred HHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CC-CcH--
Confidence 333433222 224679999999865322 1 11 1 246899999999999999875311111 11 122
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhcC
Q 044878 329 TRQRVVEKRKGLPLAARALGGLLRS 353 (368)
Q Consensus 329 ~~~~I~~~c~GlPLai~~~~~~L~~ 353 (368)
..|+..|+|+|+++..++..+..
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHHHH
T ss_pred --HHHHHHhCCCHHHHHHHHHHHcc
Confidence 67999999999999999887654
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.57 E-value=3.6e-14 Score=135.03 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=128.4
Q ss_pred CCceecccccHHHHHHHH-hcCCCCCCCCcEEEEE--EecCCcchHHHHHHHHhhhccc-----ccc-CeEEEEecCCCC
Q 044878 141 EPAVYGRDEDKDRMLDMV-LKNDPSDAANFRVIPL--VGMGGIRKTALSQEVYNDKLTE-----AFE-PKAWVCVSDDFD 211 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~-----~F~-~~~wv~vs~~~~ 211 (368)
+..++||+.+++.|.+.| .............+.| +|++|+||||||+.+++.. .. .|. ..+|+.+....+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCC
Confidence 568999999999999988 4211000012345666 9999999999999999874 22 122 356777667778
Q ss_pred HHHHHHHHHHHhccCCCC-CCChHHH----HHHHHh-cCeeEEEEEcCccCC------hhhHHHhhhhcCCC---C--CC
Q 044878 212 VLRISKAILESITLSSCG-LTDLNSV----QLKLKE-AKKFLIVLDDVWDKK------YELWQALKSPFMAG---A--PG 274 (368)
Q Consensus 212 ~~~l~~~il~~l~~~~~~-~~~~~~l----~~~l~~-~kr~LlVlDdvw~~~------~~~~~~l~~~l~~~---~--~g 274 (368)
...++..++..++...+. ..+...+ ...+.. .++++|||||++... ...+..+...+... . ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999998764332 2233333 333332 279999999997632 23444443333221 1 33
Q ss_pred cEEEEEeCChHHHhhc--------C-CCCceeCCCCChhHHHHHHHHhh---cCCCCCCCCccHHHHHHHHHHHcC----
Q 044878 275 SRIIVTTRSMVVALTM--------G-SGKNYELKLLSDDDCWSVFVNHA---FEGRDAGTHGNFESTRQRVVEKRK---- 338 (368)
Q Consensus 275 s~IivTtR~~~va~~~--------~-~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~l~~~~~~I~~~c~---- 338 (368)
..+|+||+...+...+ . ....+.+.||+.++.+++|...+ +... . --.+....|++.|+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~----~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-V----WEPRHLELISDVYGEDKG 254 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-S----CCHHHHHHHHHHHCGGGT
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-C----CChHHHHHHHHHHHHhcc
Confidence 4588888765532111 1 12238999999999999997654 2211 1 11455677888999
Q ss_pred --CChHHHHHHHH
Q 044878 339 --GLPLAARALGG 349 (368)
Q Consensus 339 --GlPLai~~~~~ 349 (368)
|.|..+..+..
T Consensus 255 ~~G~p~~~~~l~~ 267 (412)
T 1w5s_A 255 GDGSARRAIVALK 267 (412)
T ss_dssp SCCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 99976655543
No 9
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.54 E-value=3.6e-13 Score=118.04 Aligned_cols=187 Identities=11% Similarity=0.094 Sum_probs=120.7
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccccc-------------------Ce
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFE-------------------PK 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~-------------------~~ 201 (368)
..++||+..++.+..++.... ....+.|+|++|+||||||+.+++.. ....+. ..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDL 97 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSE
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcce
Confidence 468999999999999997642 23578899999999999999998874 221110 00
Q ss_pred EEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe
Q 044878 202 AWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT 281 (368)
Q Consensus 202 ~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt 281 (368)
..+.... ......+..++..+.... ...++.+|||||++..+...++.+...+.....+..+|+||
T Consensus 98 ~~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 98 IEIDAAS-RTKVEDTRDLLDNVQYAP-------------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp EEEETTC-GGGHHHHHHHHHSCCCSC-------------SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred EEecCcc-cccHHHHHHHHHHhhhch-------------hcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEe
Confidence 1111111 011111222222221100 00167899999998876677888887776655678899998
Q ss_pred CChHHH-h-hcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 044878 282 RSMVVA-L-TMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL 351 (368)
Q Consensus 282 R~~~va-~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 351 (368)
+..... . ...-...+++.+++.++..+++...+...... --.+....|++.|+|.|..+..+...+
T Consensus 164 ~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 164 TDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 764321 1 11223578999999999999998876432211 113556789999999999988876544
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.46 E-value=3e-12 Score=110.61 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=118.9
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 220 (368)
..++|++..++.+.+++.... ...+.|+|++|+|||+||+.+++......+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI- 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHH-
Confidence 468999999999999997632 2238899999999999999999874122222 22333434333333322222
Q ss_pred HHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHH--hhcCCCCceeC
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVA--LTMGSGKNYEL 298 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va--~~~~~~~~~~l 298 (368)
..+..... ....++.+|||||++.......+.+...+.....++.+|+||+..... ....-...+++
T Consensus 90 ~~~~~~~~-----------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 90 KEFARTAP-----------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp HHHHTSCC-----------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHHhcccC-----------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 22111100 001278899999998876666777777666555677899998865311 11122237899
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 299 KLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 299 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
.+++.++...++.+.+...... --.+....|++.++|.|..+..+..
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999998876321111 1135567788999999996555443
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=2e-12 Score=121.77 Aligned_cols=219 Identities=13% Similarity=-0.002 Sum_probs=132.1
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cc----cc--ccCeEEEEecCCC-CH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LT----EA--FEPKAWVCVSDDF-DV 212 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----~~--F~~~~wv~vs~~~-~~ 212 (368)
+..++||+.+++.+.++|...-.. ...+.+.|+|++|+||||||+.+++.. -. .. ....+|+..+... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKN--EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTT--CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 467999999999999887652111 345689999999999999999999873 11 11 2345677766666 78
Q ss_pred HHHHHHHHHHhccCCCC--CCChHHHHHHHHhc---CeeEEEEEcCccCChhh-HHH-hhhhcCCCCCCcEEEEEeCChH
Q 044878 213 LRISKAILESITLSSCG--LTDLNSVQLKLKEA---KKFLIVLDDVWDKKYEL-WQA-LKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 213 ~~l~~~il~~l~~~~~~--~~~~~~l~~~l~~~---kr~LlVlDdvw~~~~~~-~~~-l~~~l~~~~~gs~IivTtR~~~ 285 (368)
..++..++..+.....+ ......+...+... ++.+|||||++...... .+. +...+... .+..||+||+...
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~ 175 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCc
Confidence 88888888888433221 12223333333322 34499999996532111 122 22222222 6778999998753
Q ss_pred HHh----h--cCCCCceeCCCCChhHHHHHHHHhhcC-CCCCCCCccHHHHHHHHHHHcC---CChH-HHHHHHHHh--c
Q 044878 286 VAL----T--MGSGKNYELKLLSDDDCWSVFVNHAFE-GRDAGTHGNFESTRQRVVEKRK---GLPL-AARALGGLL--R 352 (368)
Q Consensus 286 va~----~--~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~L--~ 352 (368)
... . ......+++.|++.++..++|...+.. ....... ++....|++.|+ |.|. |+..+-... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 210 0 111238999999999999999987531 1111111 234456677776 9887 433333322 2
Q ss_pred ---CCCChHHHHHHHh
Q 044878 353 ---SKQRIDEWRAILD 365 (368)
Q Consensus 353 ---~~~~~~~W~~vl~ 365 (368)
..-+.+++..+++
T Consensus 253 ~~~~~i~~~~v~~~~~ 268 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIV 268 (384)
T ss_dssp TSSSCCCHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHH
Confidence 1245667776654
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.45 E-value=1.7e-12 Score=122.24 Aligned_cols=194 Identities=13% Similarity=0.040 Sum_probs=122.2
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccc------ccCeEEEEecCCCCHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEA------FEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------F~~~~wv~vs~~~~~~~ 214 (368)
+..++||+.+++.+..+|...-.. .....+.|+|++|+||||||+.+++.. ... -...+|+......+...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~--~~~~~vll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRG--EKPSNALLYGLTGTGKTAVARLVLRRL-EARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSS--CCCCCEEECBCTTSSHHHHHHHHHHHH-HHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHH-HHHHhccCCCeEEEEEECCcCCCHHH
Confidence 578999999999999988543111 345678899999999999999999873 211 12356777777778889
Q ss_pred HHHHHHHHhccCCCC-CCChHHHHHH----HHhc-CeeEEEEEcCccCChh--hHHHhhhhcC--CC---CCCcEEEEEe
Q 044878 215 ISKAILESITLSSCG-LTDLNSVQLK----LKEA-KKFLIVLDDVWDKKYE--LWQALKSPFM--AG---APGSRIIVTT 281 (368)
Q Consensus 215 l~~~il~~l~~~~~~-~~~~~~l~~~----l~~~-kr~LlVlDdvw~~~~~--~~~~l~~~l~--~~---~~gs~IivTt 281 (368)
++..++..++...+. ..+...+... +... ++.+|+||+++..... ..+.+...+. .. ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999998654332 2233343333 3223 6889999999654221 2223332222 11 3456788888
Q ss_pred CChHHHhh------cCCC-CceeCCCCChhHHHHHHHHhhc---CCCCCCCCccHHHHHHHHHHHcC---CChH
Q 044878 282 RSMVVALT------MGSG-KNYELKLLSDDDCWSVFVNHAF---EGRDAGTHGNFESTRQRVVEKRK---GLPL 342 (368)
Q Consensus 282 R~~~va~~------~~~~-~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~l~~~~~~I~~~c~---GlPL 342 (368)
+....... .... ..+.+.|++.++...+|...+. .... .. + +....|++.++ |.|-
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~-~~-~---~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGV-LD-P---DVVPLCAALAAREHGDAR 243 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTT-BC-S---SHHHHHHHHHHSSSCCHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCC-CC-H---HHHHHHHHHHHHhccCHH
Confidence 76532111 1112 3689999999999999988742 2111 11 2 23455677776 9994
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.41 E-value=9.9e-12 Score=117.09 Aligned_cols=204 Identities=12% Similarity=0.096 Sum_probs=134.0
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccc-cCeEEEEecCCCCHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAF-EPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~i 219 (368)
+..++||+.+++.+..++...-.......+.+.|+|++|+|||||++.+.+.. .... ...+++..+...+...++..+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 46799999999999998865211000233489999999999999999999873 2221 235667767777788899999
Q ss_pred HHHhccCCCC-CCChHHHHHHH----Hhc-CeeEEEEEcCccCChhhHHHhhhhcCCCC----CCcEEEEEeCChHHHhh
Q 044878 220 LESITLSSCG-LTDLNSVQLKL----KEA-KKFLIVLDDVWDKKYELWQALKSPFMAGA----PGSRIIVTTRSMVVALT 289 (368)
Q Consensus 220 l~~l~~~~~~-~~~~~~l~~~l----~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~IivTtR~~~va~~ 289 (368)
+..++...+. ......+...+ ... ++.+|+||+++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 9888654322 22334433333 222 68899999998776666666666553221 46688888887654332
Q ss_pred cC-------CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHc---------CCChHHHHHH
Q 044878 290 MG-------SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKR---------KGLPLAARAL 347 (368)
Q Consensus 290 ~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c---------~GlPLai~~~ 347 (368)
+. ....+.+.|++.++..+++...+....... .--.+....|++.+ +|.|..+..+
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~ 246 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDI 246 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHH
Confidence 22 113699999999999999988753210000 11145567788888 7887554443
No 14
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=2e-12 Score=121.55 Aligned_cols=201 Identities=13% Similarity=0.087 Sum_probs=125.6
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccc---cCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAF---EPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F---~~~~wv~vs~~~~~~~l~~ 217 (368)
+..++||+.+++.+.+++...-.. .....+.|+|++|+||||||+.+++. ....+ ...+|+......+...++.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~--~~~~~vli~G~~G~GKTtl~~~l~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE--EKPNNIFIYGLTGTGKTAVVKFVLSK-LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT--CCCCCEEEEECTTSSHHHHHHHHHHH-HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--CCCCeEEEECCCCCCHHHHHHHHHHH-HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 578999999999999988752111 34567899999999999999999987 33332 2456777666667778888
Q ss_pred HHHHHhccCCCC-CCChHHHHH----HHHhc-CeeEEEEEcCccCC----hhhHHHhhhhcCC-CCCCcEEEEEeCChHH
Q 044878 218 AILESITLSSCG-LTDLNSVQL----KLKEA-KKFLIVLDDVWDKK----YELWQALKSPFMA-GAPGSRIIVTTRSMVV 286 (368)
Q Consensus 218 ~il~~l~~~~~~-~~~~~~l~~----~l~~~-kr~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~IivTtR~~~v 286 (368)
.++..++..... ..+...+.. .+... ++.+||||+++... ...+..+...+.. ...+..+|+||+....
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCCh
Confidence 888777543321 123333333 33333 48999999996521 2334444443321 2345677888886643
Q ss_pred HhhcC-------CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcC---CChHHHHH
Q 044878 287 ALTMG-------SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRK---GLPLAARA 346 (368)
Q Consensus 287 a~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~---GlPLai~~ 346 (368)
...+. ....+.+.|++.++..++|...+....... .--.++...|++.++ |.|..+..
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPG--VLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSS--CSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCC--CCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 22221 114799999999999999987642111000 111344566777776 99984433
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=5e-11 Score=109.35 Aligned_cols=188 Identities=15% Similarity=0.124 Sum_probs=118.6
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++......+. ..+++..+....... +++++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHH
Confidence 468999999999999987632 2238899999999999999999874122222 233343333333222 23333
Q ss_pred HHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHH-Hhh-cCCCCceeC
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVV-ALT-MGSGKNYEL 298 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v-a~~-~~~~~~~~l 298 (368)
..+....... ...++.+||+||++..+...++.+...+.....++.+|+||....- ... ..-...+++
T Consensus 94 ~~~~~~~~~~----------~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~ 163 (323)
T 1sxj_B 94 KHFAQKKLHL----------PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRY 163 (323)
T ss_dssp HHHHHBCCCC----------CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHHHhccccC----------CCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEee
Confidence 3322110000 0115889999999887666777777777655567888888876431 111 112247999
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHH-HHHHHHH
Q 044878 299 KLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLA-ARALGGL 350 (368)
Q Consensus 299 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa-i~~~~~~ 350 (368)
.+++.++...++...+....-. --.+....|++.|+|.|.. +..+..+
T Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 164 SKLSDEDVLKRLLQIIKLEDVK----YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999998865321111 1135567899999999954 4444433
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=1.5e-10 Score=106.26 Aligned_cols=189 Identities=14% Similarity=0.085 Sum_probs=117.3
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i 219 (368)
-.+++|+++.++.+..++... ....+.++|++|+||||+|+.+++......+. ..+.+..+...... .++..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 96 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN-VIREK 96 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH-TTHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH-HHHHH
Confidence 356999999999999998763 23348899999999999999999873111111 12233322211111 11111
Q ss_pred HHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHH-Hhhc-CCCCcee
Q 044878 220 LESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVV-ALTM-GSGKNYE 297 (368)
Q Consensus 220 l~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~v-a~~~-~~~~~~~ 297 (368)
+..+....+ +...++.+||+||++..+...++.+...+.....++++|+||....- ...+ .-...+.
T Consensus 97 ~~~~~~~~~-----------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 97 VKEFARTKP-----------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHHHHHSCC-----------GGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred HHHHHhhCC-----------cCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 111110000 00126789999999887767777787777655567889988876431 0000 1113689
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 044878 298 LKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL 351 (368)
Q Consensus 298 l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 351 (368)
+.|++.++...++...+....- .--.+....|++.++|.|..+..+...+
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999998877643211 1114556778999999999766554443
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.07 E-value=5.2e-09 Score=97.86 Aligned_cols=192 Identities=13% Similarity=0.098 Sum_probs=118.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|++..++.+...+.... ....+.|+|++|+||||+|+.+.+.. ....+.. ..+..-.....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHh
Confidence 469999999999999987643 23467899999999999999998874 2211100 0000000011111
Q ss_pred HHh-------ccC-CCCCCChHHHHHHHHhc----CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HH
Q 044878 221 ESI-------TLS-SCGLTDLNSVQLKLKEA----KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VA 287 (368)
Q Consensus 221 ~~l-------~~~-~~~~~~~~~l~~~l~~~----kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va 287 (368)
... ... .........+...+... ++.+||+||+...+....+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 100 000 01223444555444432 568999999987766677777777765555677787776442 11
Q ss_pred -hhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 288 -LTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 288 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
....-...+++.+++.++...++...+-...-. --.+....|++.++|.|..+..+..
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~----~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA----HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC----BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 111122578999999999999888765221111 1134567799999999998876543
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.02 E-value=4.6e-09 Score=95.94 Aligned_cols=180 Identities=16% Similarity=0.089 Sum_probs=113.9
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|++..++.+.+++... ....+.++|++|+||||+|+.+.+......+. ..+.+..+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC---------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC---------
Confidence 46899999999988887653 22238899999999999999998873122221 122333332111
Q ss_pred HHhccCCCCCCChHHHHHHHH------hcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HHhh-cCC
Q 044878 221 ESITLSSCGLTDLNSVQLKLK------EAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VALT-MGS 292 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~------~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~-~~~ 292 (368)
............ ..++.++|+|++...+....+.+...+.....++.+|+||.... +... ..-
T Consensus 82 ---------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 82 ---------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ---------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred ---------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 111111112221 11578999999987766667778777765556778888886643 1111 112
Q ss_pred CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 293 GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 293 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
...+++.+++.++...++...+....-. --.+....|+..++|.|..+..+..
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~----i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVK----ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2478999999999999888776432211 1145567788999999986655443
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.97 E-value=3.1e-09 Score=97.47 Aligned_cols=180 Identities=12% Similarity=0.039 Sum_probs=110.3
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+++|++..+..+..++....... .....+.|+|++|+||||||+.+++.. .. ...++..+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~-~~---~~~~~~~~~~~~~~-------- 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK-EPLEHLLLFGPPGLGKTTLAHVIAHEL-GV---NLRVTSGPAIEKPG-------- 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC-SCCCCCEEECCTTCCCHHHHHHHHHHH-TC---CEEEECTTTCCSHH--------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC-CCCCcEEEECCCCCCHHHHHHHHHHHh-CC---CEEEEeccccCChH--------
Confidence 568999999888888775311000 223467899999999999999999873 21 12333333222222
Q ss_pred HhccCCCCCCChHHHHHHHHh--cCeeEEEEEcCccCChhhHHHhhhhcCCCC------------------CCcEEEEEe
Q 044878 222 SITLSSCGLTDLNSVQLKLKE--AKKFLIVLDDVWDKKYELWQALKSPFMAGA------------------PGSRIIVTT 281 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~IivTt 281 (368)
.+...+.. .+..+|+||++..........+...+.... ++..+|.||
T Consensus 79 -------------~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 79 -------------DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp -------------HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred -------------HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 22222322 166799999997765555555554443210 234677776
Q ss_pred CChHH-Hhhc--CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh
Q 044878 282 RSMVV-ALTM--GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL 351 (368)
Q Consensus 282 R~~~v-a~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L 351 (368)
..... ...+ .....+.+.+++.++...++...+....... -.+....|++.|.|.|-.+..+...+
T Consensus 146 ~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 146 TRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp SCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 64321 1101 1124789999999999998888764322111 14556788999999999887766544
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.91 E-value=3.8e-09 Score=92.30 Aligned_cols=191 Identities=15% Similarity=0.056 Sum_probs=107.5
Q ss_pred Cceeccc---ccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 142 PAVYGRD---EDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 142 ~~~~Gr~---~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
.+++|.. ..++.+..++.. ...+.+.|+|++|+||||||+.+++.. ........|+..+...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~~-~~~~~~~~~~~~~~~~~~------ 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACARA-NELERRSFYIPLGIHASI------ 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEEGGGGGGS------
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEEHHHHHHH------
Confidence 3566632 444455555543 234678899999999999999999874 222334566665442110
Q ss_pred HHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhh--HHHhhhhcCCC-CCCc-EEEEEeCChH---------
Q 044878 219 ILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYEL--WQALKSPFMAG-APGS-RIIVTTRSMV--------- 285 (368)
Q Consensus 219 il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~gs-~IivTtR~~~--------- 285 (368)
+ ......+ .++.+|||||+....... .+.+...+... ..+. ++|+||+...
T Consensus 95 ----~----------~~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 95 ----S----------TALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ----C----------GGGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ----H----------HHHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 0 0000000 156799999997654333 33344433211 1222 4777776321
Q ss_pred HHhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHHh------cCC-CChH
Q 044878 286 VALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGLL------RSK-QRID 358 (368)
Q Consensus 286 va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~L------~~~-~~~~ 358 (368)
+...+.....+++.+++.++..+++...+....-. --.+....|++.++|.+-.+..+...+ ..+ -+.+
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It~~ 234 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ----LPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIP 234 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC----CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 22222222578999999999999998876322111 114566788999999987766543221 122 3556
Q ss_pred HHHHHHh
Q 044878 359 EWRAILD 365 (368)
Q Consensus 359 ~W~~vl~ 365 (368)
..+.+++
T Consensus 235 ~v~~~l~ 241 (242)
T 3bos_A 235 FVKEMLR 241 (242)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 6666554
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=5.7e-08 Score=90.01 Aligned_cols=191 Identities=11% Similarity=0.070 Sum_probs=114.6
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccC-eEEEEecCCCCHHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEP-KAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~-~~wv~vs~~~~~~~l~~~ 218 (368)
-.+++|+++.++.+..++.... ...+.|+|++|+||||+|+.+.+.. ....+.. ...+..+....... +++
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 108 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI-VRE 108 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH-HTT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHH-HHH
Confidence 3568999999999999987632 2228899999999999999998873 2212221 22333333223222 222
Q ss_pred HHHHhccCCC-CCCChHHHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-----HHhhcC
Q 044878 219 ILESITLSSC-GLTDLNSVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-----VALTMG 291 (368)
Q Consensus 219 il~~l~~~~~-~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-----va~~~~ 291 (368)
.+..+..... ..... ....... +.-+|++|++...+......+...+.......++|++|.... +...+
T Consensus 109 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~- 184 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH---DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC- 184 (353)
T ss_dssp HHHHHHHSCCCCCCTT---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS-
T ss_pred HHHHHhhhcccccchh---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC-
Confidence 2222211110 00000 0011111 456999999977666666667766655445667887775432 12221
Q ss_pred CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 292 SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 292 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
..+.+.+++.++....+...+....-.-. ++....|++.++|.|-.+..+.
T Consensus 185 --~~i~~~~~~~~~~~~~l~~~~~~~~~~i~----~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 --SKFRFKALDASNAIDRLRFISEQENVKCD----DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp --EEEECCCCCHHHHHHHHHHHHHTTTCCCC----HHHHHHHHHHTSSCHHHHHHHH
T ss_pred --ceEEeCCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHHH
Confidence 36889999999999988876633211111 4567789999999998755443
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.84 E-value=1.2e-08 Score=85.57 Aligned_cols=148 Identities=15% Similarity=0.122 Sum_probs=81.9
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cc---cccc--CeEEEEecCCCCHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LT---EAFE--PKAWVCVSDDFDVLR 214 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~---~~F~--~~~wv~vs~~~~~~~ 214 (368)
-..++||+++++.+.+.+... ....+.|+|++|+||||||+.+++.. .. ..+. ..+++..+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------
Confidence 356899999999999998762 23457899999999999999998874 11 1111 223332211
Q ss_pred HHHHHHHHhccCCCC---CCChHHHHHHHHhc-CeeEEEEEcCccCC--------hhhHHHhhhhcCCCCCCcEEEEEeC
Q 044878 215 ISKAILESITLSSCG---LTDLNSVQLKLKEA-KKFLIVLDDVWDKK--------YELWQALKSPFMAGAPGSRIIVTTR 282 (368)
Q Consensus 215 l~~~il~~l~~~~~~---~~~~~~l~~~l~~~-kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTtR 282 (368)
+. ...... ......+...+... ++.+|+|||+.... ......+...+.. .+..+|.||.
T Consensus 89 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 89 LV-------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp HH-------TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred Hh-------ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 10 000000 00112222223222 67899999996542 1123334333322 3446777776
Q ss_pred ChHHHhhc-------CCCCceeCCCCChhHHHHH
Q 044878 283 SMVVALTM-------GSGKNYELKLLSDDDCWSV 309 (368)
Q Consensus 283 ~~~va~~~-------~~~~~~~l~~L~~~~~~~l 309 (368)
........ .-...+.+.+++.++..++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~i 193 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAI 193 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHH
Confidence 65432211 1112578888888776654
No 23
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.8e-08 Score=90.44 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=101.8
Q ss_pred eecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc---ccc--CeEEEEecCCCCHHHHHH
Q 044878 144 VYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE---AFE--PKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 144 ~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~---~F~--~~~wv~vs~~~~~~~l~~ 217 (368)
+.||+++.++|...|...-.. .....+.|+|++|+|||++++.|.+.. ... ... ..+.+......+...++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~--~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS--SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 789999999999887652111 456778999999999999999999884 111 111 234455555567788999
Q ss_pred HHHHHhccCCC-CCCChHHHHHHHHh-----cCeeEEEEEcCccCChhhHHHhhhhcCC-CCCCc--EEEEEeCChHH--
Q 044878 218 AILESITLSSC-GLTDLNSVQLKLKE-----AKKFLIVLDDVWDKKYELWQALKSPFMA-GAPGS--RIIVTTRSMVV-- 286 (368)
Q Consensus 218 ~il~~l~~~~~-~~~~~~~l~~~l~~-----~kr~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs--~IivTtR~~~v-- 286 (368)
.|.+++..... .......+...+.. .++++++||++.... .-+.+...+.. ....+ .||.++...+.
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999965432 22334444444332 278999999996543 22233333211 01222 33444433211
Q ss_pred -------HhhcCCCCceeCCCCChhHHHHHHHHhh
Q 044878 287 -------ALTMGSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 287 -------a~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
...++ ...+.+.|++.++-.+++.+++
T Consensus 178 ~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 178 EQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 1468999999999999998876
No 24
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.75 E-value=1.9e-07 Score=86.05 Aligned_cols=177 Identities=13% Similarity=0.140 Sum_probs=108.2
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+++|++..++.+..++....... .....+.|+|++|+|||+||+.+.+. ....| +.+..+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~-~~~~~vll~G~~GtGKT~la~~ia~~-~~~~~---~~~~~~~~~----------- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRN-ECLDHILFSGPAGLGKTTLANIISYE-MSANI---KTTAAPMIE----------- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTT-SCCCCEEEECSTTSSHHHHHHHHHHH-TTCCE---EEEEGGGCC-----------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcC-CCCCeEEEECcCCCCHHHHHHHHHHH-hCCCe---EEecchhcc-----------
Confidence 468999999999988886531100 23455889999999999999999876 32222 222222111
Q ss_pred HhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhcCCCC------------------CCcEEEEEeC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPFMAGA------------------PGSRIIVTTR 282 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~IivTtR 282 (368)
....+...+... +..+|+||++..........+...+.... ++..+|.+|.
T Consensus 93 ----------~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 93 ----------KSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp ----------SHHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred ----------chhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 112222223222 67899999998776555566665553321 1245666666
Q ss_pred ChHH---HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 283 SMVV---ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 283 ~~~v---a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
.... +........+.+.+++.++...++.+.+-.... .--.+....|++.+.|.|-.+..+.
T Consensus 163 ~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 163 RAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 5321 101122357899999999999998877632211 1124556778889999995554433
No 25
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.75 E-value=5.9e-08 Score=92.88 Aligned_cols=181 Identities=16% Similarity=0.100 Sum_probs=106.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhcccccc--CeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFE--PKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~--~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
...+.|+|++|+||||||+.+++.. ...+. ..++++. ..+..++...+... ....+...+.. +.-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l-~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~ 196 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLNEFREKYRK-KVD 196 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH-HHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----CHHHHHHHHTT-TCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----cHHHHHHHhcC-CCC
Confidence 5668999999999999999999873 33332 2334432 23344444444322 22233333321 567
Q ss_pred EEEEEcCccCCh--hhHHHhhhhcCC-CCCCcEEEEEeCCh---------HHHhhcCCCCceeCCCCChhHHHHHHHHhh
Q 044878 247 LIVLDDVWDKKY--ELWQALKSPFMA-GAPGSRIIVTTRSM---------VVALTMGSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 247 LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
+|+|||+..... ...+.+...+.. ...|..||+||... .+...+..+..+.+.+++.++...++.+.+
T Consensus 197 vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 197 ILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKML 276 (440)
T ss_dssp EEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHH
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 999999976432 233344444421 23567899988762 233334444678999999999999998876
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHHH------hcCC-CChHHHHHHHhc
Q 044878 315 FEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGGL------LRSK-QRIDEWRAILDS 366 (368)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~------L~~~-~~~~~W~~vl~~ 366 (368)
.... ...+ .++...|++.+.|.+-.+.-+... +..+ -+.+.++.++..
T Consensus 277 ~~~~-~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 277 EIEH-GELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHT-CCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTST
T ss_pred HHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3211 1111 233566888899988654433221 1222 456777777653
No 26
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.68 E-value=2.8e-07 Score=83.75 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=93.6
Q ss_pred ceecccccHHHHHHHHhcCC---------CCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCH
Q 044878 143 AVYGRDEDKDRMLDMVLKND---------PSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDV 212 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~ 212 (368)
.++|.+..++.|.+++.... -........+.|+|++|+|||+||+.+.+.. ........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47898888888876654210 0000344568899999999999999988774 2222222234444321
Q ss_pred HHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC---------ChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 213 LRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK---------KYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 213 ~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
.+... ........+...+...+.-+|+||++... +......+...+.....+..||.||..
T Consensus 109 ---------~l~~~-~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 ---------DLVGQ-YIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp ---------GTCCS-STTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred ---------Hhhhh-cccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 00000 00111122233333335679999999733 444556666666555556788888865
Q ss_pred hHHHhh--cC------CCCceeCCCCChhHHHHHHHHhhc
Q 044878 284 MVVALT--MG------SGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 284 ~~va~~--~~------~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
...... .. ....+.+.+++.++-..++...+.
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 432111 11 125789999999999999887763
No 27
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.67 E-value=2.3e-07 Score=86.54 Aligned_cols=191 Identities=13% Similarity=0.073 Sum_probs=106.5
Q ss_pred CceecccccHHH---HHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE----ecCCCCHHH
Q 044878 142 PAVYGRDEDKDR---MLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC----VSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~----vs~~~~~~~ 214 (368)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||+||+.+.+.. .... ..+.+. .+.......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l-~~~~-~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL-GPDT-PFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH-CSSC-CEEEEEGGGGSCSSSCHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh-cccC-CcccccchhhhhcccchhH
Confidence 479999988766 445554432 223678899999999999999999873 2111 111122 122233444
Q ss_pred HHHHHHHHhccC---------------------C-------CC--CCChHHHHHHHHhc--------C----eeEEEEEc
Q 044878 215 ISKAILESITLS---------------------S-------CG--LTDLNSVQLKLKEA--------K----KFLIVLDD 252 (368)
Q Consensus 215 l~~~il~~l~~~---------------------~-------~~--~~~~~~l~~~l~~~--------k----r~LlVlDd 252 (368)
.+...+...... . .+ ......+...+... + +.+|+||+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 444443331110 0 00 00012222222111 2 45999999
Q ss_pred CccCChhhHHHhhhhcCCCCCCcEEEEEeCC-----------------hHHHhhcCCCCceeCCCCChhHHHHHHHHhhc
Q 044878 253 VWDKKYELWQALKSPFMAGAPGSRIIVTTRS-----------------MVVALTMGSGKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 253 vw~~~~~~~~~l~~~l~~~~~gs~IivTtR~-----------------~~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
+...+....+.+...+...... .++++|.. +.+...+ ..+.+.+++.++...++...+-
T Consensus 198 i~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHHH
Confidence 9877666677777666543333 34444431 1222221 3479999999999999987763
Q ss_pred CCCCCCCCccHHHHHHHHHHHcC-CChHHHHH
Q 044878 316 EGRDAGTHGNFESTRQRVVEKRK-GLPLAARA 346 (368)
Q Consensus 316 ~~~~~~~~~~l~~~~~~I~~~c~-GlPLai~~ 346 (368)
..... --.+....|++.+. |.|-.+..
T Consensus 274 ~~~~~----~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 274 EEDVE----MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HTTCC----BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HcCCC----CCHHHHHHHHHHhcCCCHHHHHH
Confidence 32111 12455677888887 77765543
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.66 E-value=1.4e-07 Score=92.19 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=106.6
Q ss_pred CceecccccHHHHHHHHhcCC-----------CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC
Q 044878 142 PAVYGRDEDKDRMLDMVLKND-----------PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF 210 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~ 210 (368)
.+++|++..++.+.++|.... .......+.+.|+|++|+||||||+.+.+. .. + ..+.+..+...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~-l~--~-~~i~in~s~~~ 114 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE-LG--Y-DILEQNASDVR 114 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH-TT--C-EEEEECTTSCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH-cC--C-CEEEEeCCCcc
Confidence 468999999999999986511 000013468899999999999999999987 31 1 12333334333
Q ss_pred CHHHHHHHHHHHhccCCCCCCChHHHHHHHHh-cCeeEEEEEcCccCCh---hhHHHhhhhcCCCCCCcEEEEEeCChH-
Q 044878 211 DVLRISKAILESITLSSCGLTDLNSVQLKLKE-AKKFLIVLDDVWDKKY---ELWQALKSPFMAGAPGSRIIVTTRSMV- 285 (368)
Q Consensus 211 ~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdvw~~~~---~~~~~l~~~l~~~~~gs~IivTtR~~~- 285 (368)
.. .++...+........-..-.......+.. .++.+|+||++..... ..+..+...+.. .+..||+++....
T Consensus 115 ~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~ 191 (516)
T 1sxj_A 115 SK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNL 191 (516)
T ss_dssp CH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTS
T ss_pred hH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCC
Confidence 32 23333222221111000000000000111 2778999999965432 223455544433 2334666655432
Q ss_pred --HHhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHH
Q 044878 286 --VALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG-LPLAARALG 348 (368)
Q Consensus 286 --va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 348 (368)
+.....-...+.+.+++.++..+++...+....-... .+....|++.++| ++-++..+.
T Consensus 192 ~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 192 PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2211122246899999999999888776543221111 2235678888999 445555543
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.64 E-value=3.1e-07 Score=87.85 Aligned_cols=179 Identities=16% Similarity=0.116 Sum_probs=102.2
Q ss_pred CceecccccH---HHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCC-CCHHHHHH
Q 044878 142 PAVYGRDEDK---DRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDD-FDVLRISK 217 (368)
Q Consensus 142 ~~~~Gr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~-~~~~~l~~ 217 (368)
.+++|.+..+ ..|...+.. .....+.|+|++|+||||||+.+.+. .... ++.++.. ..... ++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~------~~~~~vLL~GppGtGKTtlAr~ia~~-~~~~-----f~~l~a~~~~~~~-ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA------GHLHSMILWGPPGTGKTTLAEVIARY-ANAD-----VERISAVTSGVKE-IR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH------TCCCEEEEECSTTSSHHHHHHHHHHH-TTCE-----EEEEETTTCCHHH-HH
T ss_pred HHhCCcHHHHhchHHHHHHHHc------CCCcEEEEECCCCCcHHHHHHHHHHH-hCCC-----eEEEEeccCCHHH-HH
Confidence 4688988777 667777765 33467889999999999999999987 3322 2333222 12222 12
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEE-EeCChH--H-HhhcCCC
Q 044878 218 AILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIV-TTRSMV--V-ALTMGSG 293 (368)
Q Consensus 218 ~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~Iiv-TtR~~~--v-a~~~~~~ 293 (368)
.++.... ......++.+|+||++...+....+.+...+..+ ...+|. ||.+.. + .....-.
T Consensus 93 ~~~~~a~-------------~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 93 EAIERAR-------------QNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp HHHHHHH-------------HHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTTE
T ss_pred HHHHHHH-------------HhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCce
Confidence 2221111 1111127889999999876655666666666542 234443 444432 1 1111222
Q ss_pred CceeCCCCChhHHHHHHHHhhcCCCCC---CCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 294 KNYELKLLSDDDCWSVFVNHAFEGRDA---GTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 294 ~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
.++.+.+++.++...++.+.+...... ....--.+....|++.++|.+-.+..+-
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 478899999999999988876431110 0111124566778888999877655443
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.61 E-value=3.1e-07 Score=82.48 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=97.4
Q ss_pred CceecccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.+++|.+..++.|.+.+...-.. .....+-+.|+|++|+||||||+.+++.. ...| +.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-~~~~---~~v~~~~~~~--- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-NATF---IRVVGSELVK--- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-TCEE---EEEEGGGGCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCE---EEEehHHHHH---
Confidence 46889999888888876431000 00233558899999999999999999873 2221 2222221110
Q ss_pred HHHHHHHHhccCCCC--CCChHHHHHHHHhcCeeEEEEEcCccC-----------ChhhHHHhhhhc---C--CCCCCcE
Q 044878 215 ISKAILESITLSSCG--LTDLNSVQLKLKEAKKFLIVLDDVWDK-----------KYELWQALKSPF---M--AGAPGSR 276 (368)
Q Consensus 215 l~~~il~~l~~~~~~--~~~~~~l~~~l~~~kr~LlVlDdvw~~-----------~~~~~~~l~~~l---~--~~~~gs~ 276 (368)
...+ ......+........+.+|+||++... +......+...+ . ....+..
T Consensus 90 -----------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 90 -----------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp -----------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred -----------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 0000 001112222333336689999999542 111112222222 1 1224567
Q ss_pred EEEEeCChHHHh--hcC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHH
Q 044878 277 IIVTTRSMVVAL--TMG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG-LPLAARA 346 (368)
Q Consensus 277 IivTtR~~~va~--~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~ 346 (368)
||.||....... ... -...+.+.+.+.++..++|...+..... .....+ ..|+..+.| .|-.+..
T Consensus 159 vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~----~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 159 IIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVNL----EEIAKMTEGCVGAELKA 229 (285)
T ss_dssp EEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCCH----HHHHHHCTTCCHHHHHH
T ss_pred EEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCCH----HHHHHHcCCCCHHHHHH
Confidence 788887543211 111 1236899999999999999887643221 111223 456777777 4534443
No 31
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.61 E-value=1.1e-07 Score=76.68 Aligned_cols=114 Identities=12% Similarity=-0.077 Sum_probs=71.2
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
.++|+...+.++.+.+..-.. ...-|.|+|++|+|||+||+.+++....... ..+ +..+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~-~~v-~~~~~~~~~---------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRNAQG-EFV-YRELTPDNA---------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTTTTS-CCE-EEECCTTTS----------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCccCC-CEE-EECCCCCcc----------
Confidence 578999999999988754221 1223679999999999999999986311111 223 554432221
Q ss_pred hccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 223 ITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 223 l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
... ...+.....-.|+||++..........+...+.......++|.||..
T Consensus 66 --------~~~---~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 --------PQL---NDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp --------SCH---HHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred --------hhh---hcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 111 11222225568999999887766666777666544445678888775
No 32
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.59 E-value=1e-06 Score=80.72 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=88.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLI 248 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~Ll 248 (368)
...+.|+|++|+||||||+.+++.. ...-...++++. ..+...+...+... ........+. +.-+|
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~-~~~~~~~~~i~~------~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~vL 102 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA-KKRGYRVIYSSA------DDFAQAMVEHLKKG-----TINEFRNMYK--SVDLL 102 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH-HHTTCCEEEEEH------HHHHHHHHHHHHHT-----CHHHHHHHHH--TCSEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHCCCEEEEEEH------HHHHHHHHHHHHcC-----cHHHHHHHhc--CCCEE
Confidence 4568899999999999999999874 111112344432 23344444443221 1222222222 56799
Q ss_pred EEEcCccCCh--hhHHHhhhhcCC-CCCCcEEEEEeCCh---------HHHhhcCCCCceeCCCCChhHHHHHHHHhhcC
Q 044878 249 VLDDVWDKKY--ELWQALKSPFMA-GAPGSRIIVTTRSM---------VVALTMGSGKNYELKLLSDDDCWSVFVNHAFE 316 (368)
Q Consensus 249 VlDdvw~~~~--~~~~~l~~~l~~-~~~gs~IivTtR~~---------~va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 316 (368)
+|||+..... ...+.+...+.. ...|..||+||... .+...+.....+++.| +.++...++...+..
T Consensus 103 ~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~ 181 (324)
T 1l8q_A 103 LLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKE 181 (324)
T ss_dssp EEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHH
T ss_pred EEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHh
Confidence 9999966432 223334444321 12456788887642 2222333335689999 999999999887642
Q ss_pred CCCCCCCccHHHHHHHHHHHcCCChH
Q 044878 317 GRDAGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 317 ~~~~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
..- .. -+++...|++.+ |.+-
T Consensus 182 ~~~-~l---~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 182 FNL-EL---RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp TTC-CC---CHHHHHHHHHHC-SSHH
T ss_pred cCC-CC---CHHHHHHHHHhC-CCHH
Confidence 211 11 144566778888 7654
No 33
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.56 E-value=1.6e-06 Score=79.42 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=104.4
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
.+++|.+..++.+.+++.... ...++.+.|++|+||||+|+.+.+. ... ..+.+..+. .... .++.++.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~-l~~---~~~~i~~~~-~~~~-~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD-VNA---DMMFVNGSD-CKID-FVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH-TTE---EEEEEETTT-CCHH-HHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH-hCC---CEEEEcccc-cCHH-HHHHHHH
Confidence 568999999999999998542 3457788899999999999999987 321 123333333 2222 2222222
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC-hhhHHHhhhhcCCCCCCcEEEEEeCChH-----HHhhcCCCCc
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK-YELWQALKSPFMAGAPGSRIIVTTRSMV-----VALTMGSGKN 295 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~IivTtR~~~-----va~~~~~~~~ 295 (368)
........ ..++.+|+||++.... ....+.+...+.....+..+|+||.... +...+ ..
T Consensus 95 ~~~~~~~~------------~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~ 159 (324)
T 3u61_B 95 NFASAASF------------DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RV 159 (324)
T ss_dssp HHHHBCCC------------SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EE
T ss_pred HHHhhccc------------CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cE
Confidence 21111000 0167899999997765 4555666665543334568888887643 22221 36
Q ss_pred eeCCCCChhHHHHH-------HHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHH
Q 044878 296 YELKLLSDDDCWSV-------FVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALG 348 (368)
Q Consensus 296 ~~l~~L~~~~~~~l-------f~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 348 (368)
+++.+++.++-.++ +...+.... ... ++ .+....|++.++|.+-.+....
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~-~~-~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAI-AD-MKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCB-SC-HHHHHHHHHHTCSCTTHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCC-Cc-HHHHHHHHHhCCCCHHHHHHHH
Confidence 89999998874332 222221111 111 11 2566778888988776544333
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.55 E-value=2e-06 Score=76.01 Aligned_cols=187 Identities=15% Similarity=0.088 Sum_probs=96.2
Q ss_pred CceecccccHHHHHHHHh---cCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVL---KNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++.+.+++. ..+. ......+-+.|+|++|+|||+||+.+++.. ... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~-~~~---~~~~~~~~~~~~--- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA-QVP---FLAMAGAEFVEV--- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCC---EEEEETTTTSSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCC---EEEechHHHHhh---
Confidence 357888877777665542 2110 000233557899999999999999999873 221 233333321110
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC------------h---hhHHHhhhhcCC--CCCCcEEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK------------Y---ELWQALKSPFMA--GAPGSRII 278 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~------------~---~~~~~l~~~l~~--~~~gs~Ii 278 (368)
... ........+........+.+|+||++.... . .....+...+.. ...+..||
T Consensus 79 -------~~~--~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi 149 (262)
T 2qz4_A 79 -------IGG--LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVL 149 (262)
T ss_dssp -------STT--HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEE
T ss_pred -------ccC--hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEE
Confidence 000 000011222222333357899999996531 1 112223222221 12355677
Q ss_pred EEeCChHHH-h-hcC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044878 279 VTTRSMVVA-L-TMG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARAL 347 (368)
Q Consensus 279 vTtR~~~va-~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 347 (368)
.||...... . ... -...+.+.+.+.++-.++|...+..... . .........+++.+.|.+- .+..+
T Consensus 150 ~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~--~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 150 ASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-T--QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-C--BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred ecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-C--cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 777654321 1 111 2246789999999999998887633211 1 1222234678889998754 44443
No 35
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=4.2e-07 Score=84.28 Aligned_cols=194 Identities=9% Similarity=0.080 Sum_probs=107.7
Q ss_pred CceecccccHHHHHHHH-hcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccc-----ccCe--------------
Q 044878 142 PAVYGRDEDKDRMLDMV-LKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEA-----FEPK-------------- 201 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----F~~~-------------- 201 (368)
.+++|.+...+.+..++ ... .... +.|+|+.|+||||||+.+........ ++..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45889988888888777 332 2223 89999999999999999887521100 0000
Q ss_pred ----EEEEecCC-CC--HHHHHHHHHHHhccCCCCCCChHHHHHHHH--hcCeeEEEEEcCccCChhhHHHhhhhcCCCC
Q 044878 202 ----AWVCVSDD-FD--VLRISKAILESITLSSCGLTDLNSVQLKLK--EAKKFLIVLDDVWDKKYELWQALKSPFMAGA 272 (368)
Q Consensus 202 ----~wv~vs~~-~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~ 272 (368)
.++.+... .. .....++++..+..... ... .. .+. ..++-+++||++...+....+.+...+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~---~~-~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-VDF---QD-SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-ccc---cc-cccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 01111110 00 00122333333321110 000 00 001 1156699999998877666677777665444
Q ss_pred CCcEEEEEeCChH-HHhhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHHHH
Q 044878 273 PGSRIIVTTRSMV-VALTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARALGG 349 (368)
Q Consensus 273 ~gs~IivTtR~~~-va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 349 (368)
.++.+|++|.... +...+ .-...+++.+++.++....+...+.... .... . ++....|++.++|.+-.+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-IQLE-T-KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CEEC-C-SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-CCCC-c-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678888887532 11111 1125789999999999998887663211 1111 0 24456788899998876655543
No 36
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.54 E-value=3.4e-06 Score=77.67 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=103.6
Q ss_pred cccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cccc--------------------ccCeEEEEe
Q 044878 148 DEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEA--------------------FEPKAWVCV 206 (368)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~--------------------F~~~~wv~v 206 (368)
++..+.+...+..+ .-...+.++|+.|+||||+|+.+.+.. .... ++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 34455666666543 234568899999999999999998874 2111 11 122222
Q ss_pred c---CCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 207 S---DDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 207 s---~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
. ....+.. .+++.+.+..... ..++-++|+|++...+....+.+...+.....++.+|++|..
T Consensus 82 ~~~~~~~~i~~-ir~l~~~~~~~~~-------------~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 82 EKGKNTLGVDA-VREVTEKLNEHAR-------------LGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp CTTCSSBCHHH-HHHHHHHTTSCCT-------------TSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred cccCCCCCHHH-HHHHHHHHhhccc-------------cCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 1 1122222 1233333221110 015678999999887766777787777655556777777766
Q ss_pred hH-HHhhc-CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 284 MV-VALTM-GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 284 ~~-va~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.+ +...+ .-...+++.+++.++....+.... . .. .+....+++.++|.|..+..+
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~-~~----~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T-MS----QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C-CC----HHHHHHHHHHTTTCHHHHHHT
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C-CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 43 21111 112478999999999999887764 1 11 344567899999999866543
No 37
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=2.6e-06 Score=78.59 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=105.5
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEecCCCCHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~il 220 (368)
.+++|.+..++.|...+..+. ...+.++|+.|+||||+|+.+.+......+. ...-+..+.......+ ++++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i-r~~i 97 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV-RNQI 97 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHH-HHHH
Confidence 357788888888888876532 2238899999999999999998873111121 1112222222222222 1222
Q ss_pred HHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChH-HHhhc-CCCCceeC
Q 044878 221 ESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMV-VALTM-GSGKNYEL 298 (368)
Q Consensus 221 ~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~-va~~~-~~~~~~~l 298 (368)
..+....... ...+-++|+|++...+....+.+...+......+.+|++|.... +...+ .-...+.+
T Consensus 98 ~~~~~~~~~~-----------~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~ 166 (340)
T 1sxj_C 98 KDFASTRQIF-----------SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRF 166 (340)
T ss_dssp HHHHHBCCSS-----------SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred HHHHhhcccC-----------CCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEec
Confidence 2111000000 01467899999977666666667666654445667777775432 11111 11236889
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 299 KLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 299 ~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
.+++.++....+...+-... ... -++....|++.++|.+--+..+
T Consensus 167 ~~l~~~~~~~~l~~~~~~~~-~~i---~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 167 QPLPQEAIERRIANVLVHEK-LKL---SPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-CCB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999998888876652211 111 1345677888899988754433
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.48 E-value=6.7e-06 Score=73.26 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=100.2
Q ss_pred CceecccccHHHHHH-------HHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC---C
Q 044878 142 PAVYGRDEDKDRMLD-------MVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF---D 211 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~---~ 211 (368)
..++|.....+.+.. .+..... .....+.|+|++|+|||+||+.+.+.. ...| +.+..+..+ .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~---~~~~~vLl~G~~GtGKT~la~~ia~~~-~~~~---~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPPHSGKTALAAKIAEES-NFPF---IKICSPDKMIGFS 105 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSS---CSEEEEEEECSTTSSHHHHHHHHHHHH-TCSE---EEEECGGGCTTCC
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCC---CCCeEEEEECCCCCcHHHHHHHHHHHh-CCCE---EEEeCHHHhcCCc
Confidence 457888777666665 2322111 456788999999999999999999872 2111 222222110 0
Q ss_pred HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC----------ChhhHHHhhhhcCC---CCCCcEEE
Q 044878 212 VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK----------KYELWQALKSPFMA---GAPGSRII 278 (368)
Q Consensus 212 ~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~----------~~~~~~~l~~~l~~---~~~gs~Ii 278 (368)
..... .....+.......+..+|+||++... .....+.+...+.. ......||
T Consensus 106 ~~~~~--------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 106 ETAKC--------------QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp HHHHH--------------HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred hHHHH--------------HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 00000 00111222222236889999998542 11122333333322 22234567
Q ss_pred EEeCChHHHhhc---CC-CCceeCCCCCh-hHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC------ChHHHHHH
Q 044878 279 VTTRSMVVALTM---GS-GKNYELKLLSD-DDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG------LPLAARAL 347 (368)
Q Consensus 279 vTtR~~~va~~~---~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G------lPLai~~~ 347 (368)
.||......... .. ...+++.+++. ++...++.... . .. .+....|++.+.| ++-++.++
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~-~~----~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----N-FK----DKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----C-SC----HHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----C-CC----HHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 778776543331 11 24688999988 66666665431 1 11 3445678888877 44444444
Q ss_pred HHHhcCCCChHHHHHHH
Q 044878 348 GGLLRSKQRIDEWRAIL 364 (368)
Q Consensus 348 ~~~L~~~~~~~~W~~vl 364 (368)
-..-. ......|..++
T Consensus 243 ~~a~~-~~~~~~~~~~~ 258 (272)
T 1d2n_A 243 EMSLQ-MDPEYRVRKFL 258 (272)
T ss_dssp HHHTT-SCGGGHHHHHH
T ss_pred HHHhh-hchHHHHHHHH
Confidence 43333 22334555554
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.47 E-value=3.8e-06 Score=76.87 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=99.9
Q ss_pred CceecccccHHHHHHHHhcC-------CCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKN-------DPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.+++|.+..++.|.+.+... .... ...+-+.++|++|+|||+||+.+++. ....| +.+..+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~-~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNR-KPTSGILLYGPPGTGKSYLAKAVATE-ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC-CCCCEEEEECSSSSCHHHHHHHHHHH-HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHH-HCCCE---EEEchH------H
Confidence 46788888888888776210 0011 23466889999999999999999987 32222 222211 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh-----------hhHHHhhhhcC---CCCCCcEEEEE
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY-----------ELWQALKSPFM---AGAPGSRIIVT 280 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~---~~~~gs~IivT 280 (368)
+ ....... .......+.......++.+|+||++..... .....+...+. ....+..||.|
T Consensus 87 l----~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~a 160 (322)
T 3eie_A 87 L----VSKWMGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 160 (322)
T ss_dssp H----HTTTGGG--HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEE
T ss_pred H----hhcccch--HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEe
Confidence 1 1110000 000112222333333678999999964311 11233333332 22345566667
Q ss_pred eCChHH-----HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 044878 281 TRSMVV-----ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGL-PLAARAL 347 (368)
Q Consensus 281 tR~~~v-----a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 347 (368)
|..... .. .-...+.+.+.+.++-.++|...+........ ......|++.+.|. +-.|..+
T Consensus 161 tn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 161 TNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp ESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHH
T ss_pred cCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 765322 22 22346778888999999999887643221111 33456788888884 4444433
No 40
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.47 E-value=3.2e-07 Score=76.39 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=39.3
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-..++||+.+++.+.+.+... ....+.|+|++|+||||||+.+.+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999762 23456899999999999999998874
No 41
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.45 E-value=6.7e-06 Score=76.41 Aligned_cols=187 Identities=12% Similarity=0.018 Sum_probs=99.8
Q ss_pred CceecccccHHHHHHHHhc----CCC--CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLK----NDP--SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++.|.+.+.. .+. ......+.+.|+|++|+|||+||+.+++. .... .+.+..+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~-~~~~---~~~i~~~~l~~~--- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ-SGAT---FFSISASSLTSK--- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH-TTCE---EEEEEGGGGCCS---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH-cCCe---EEEEehHHhhcc---
Confidence 4689999999998887642 100 00023467889999999999999999987 3222 233333321110
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC-----------hhhHHHhhhhcCC----CCCCcEEEEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK-----------YELWQALKSPFMA----GAPGSRIIVT 280 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l~~----~~~gs~IivT 280 (368)
... ........+.......++.+|+||++.... ......+...+.. ...+..||.|
T Consensus 157 -------~~g--~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 157 -------WVG--EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227 (357)
T ss_dssp -------STT--HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEE
T ss_pred -------ccc--hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 000 000001112222222367899999994320 0112233333321 1234456667
Q ss_pred eCChH-H--HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHHHH
Q 044878 281 TRSMV-V--ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG-LPLAARALG 348 (368)
Q Consensus 281 tR~~~-v--a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 348 (368)
|.... + +........+.+...+.++..+++...+-.....- -......|++.+.| .|-.+..+.
T Consensus 228 tn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 228 TNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL----SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp ESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc----cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 76532 1 11112224678888888888888877663221111 13456678888888 555555543
No 42
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.44 E-value=3.8e-06 Score=77.99 Aligned_cols=186 Identities=15% Similarity=0.077 Sum_probs=98.7
Q ss_pred CceecccccHHHHHHHHhcC----C--CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKN----D--PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++.|.+.+... . .......+-+.|+|++|+|||+||+.+++.. ...| +.+..+ ++
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~~~~---~~v~~~------~l 120 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-NSTF---FSVSSS------DL 120 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-TCEE---EEEEHH------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCE---EEeeHH------HH
Confidence 46899999999988876321 0 0000223457899999999999999999873 2222 122211 11
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChh-----------hHHHhhhhcC---CCCCCcEEEEEe
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYE-----------LWQALKSPFM---AGAPGSRIIVTT 281 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~-----------~~~~l~~~l~---~~~~gs~IivTt 281 (368)
. ...... .......+.......++.+|+||++...... ....+...+. ....+..||.||
T Consensus 121 ~----~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~at 194 (355)
T 2qp9_X 121 V----SKWMGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGAT 194 (355)
T ss_dssp H----SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEE
T ss_pred h----hhhcch--HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeec
Confidence 1 110000 0011122223333337889999999653211 1223333222 123455666677
Q ss_pred CChHH---HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 044878 282 RSMVV---ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGL-PLAARAL 347 (368)
Q Consensus 282 R~~~v---a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 347 (368)
..... +..-.-...+.+.+.+.++-.++|...+........ ......|++.+.|. |-.|..+
T Consensus 195 n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 195 NIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp SCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 65421 111123356788888889888988887633211111 33456788899884 4344433
No 43
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.44 E-value=4.8e-07 Score=75.45 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=58.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFL 247 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~L 247 (368)
...+.|+|++|+||||||+.+++.. ....+ .+.++ +..++...+.......... .+...+. +.-+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~l 103 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKDT-----KFLKTVL--NSPV 103 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCCS-----HHHHHHH--TCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchHH-----HHHHHhc--CCCE
Confidence 4678999999999999999999874 12222 23333 3445555554444322111 2333333 5679
Q ss_pred EEEEcCccCChhhHH--HhhhhcCCC-CCCcEEEEEeCC
Q 044878 248 IVLDDVWDKKYELWQ--ALKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 248 lVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~IivTtR~ 283 (368)
|||||++......|. .+...+... ..|..+|+||..
T Consensus 104 lilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 104 LVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp EEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred EEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999999743323443 333333211 256788888864
No 44
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.40 E-value=5.4e-07 Score=76.59 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=56.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
..+.|+|++|+||||||+.+++.. ......+++++++ .+...+...... .....+...+.. .-+||
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~li 120 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL-AKRNVSSLIVYVP------ELFRELKHSLQD-----QTMNEKLDYIKK--VPVLM 120 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEEEHH------HHHHHHHHC--------CCCHHHHHHHHH--SSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEEhH------HHHHHHHHHhcc-----chHHHHHHHhcC--CCEEE
Confidence 678899999999999999999874 3333445666543 444444433321 123444444544 24999
Q ss_pred EEcCccCChhhHHH--hhh-hcCCC-CCCcEEEEEeCC
Q 044878 250 LDDVWDKKYELWQA--LKS-PFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 250 lDdvw~~~~~~~~~--l~~-~l~~~-~~gs~IivTtR~ 283 (368)
|||++......|.. +.. .+... ..+.++|+||..
T Consensus 121 lDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 121 LDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp EEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred EcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 99996643333321 221 22111 245578888875
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.38 E-value=2.9e-05 Score=74.24 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=102.1
Q ss_pred CceecccccHHHHHHHHhc----CCC--CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLK----NDP--SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++.|.+.+.. ... ......+-+.|+|++|+|||+||+.+++. . ...-++.++.. .+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~-~----~~~~~~~v~~~----~l 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE-A----NNSTFFSISSS----DL 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH-C----CSSEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH-c----CCCCEEEEeHH----HH
Confidence 5689999999988887631 000 00023467889999999999999999987 3 11223444332 11
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh-----------hhHHHhhhhcCC---CCCCcEEEEEe
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY-----------ELWQALKSPFMA---GAPGSRIIVTT 281 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~-----------~~~~~l~~~l~~---~~~gs~IivTt 281 (368)
. ..... ........+........+.+|+||++..... .....+...+.. ...+..||.||
T Consensus 205 ~----~~~~g--~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~at 278 (444)
T 2zan_A 205 V----SKWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278 (444)
T ss_dssp -------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEE
T ss_pred H----hhhcc--hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecC
Confidence 1 11111 1123345555555555788999999964310 112223333321 13455677777
Q ss_pred CChHH---HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHH
Q 044878 282 RSMVV---ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGL-PLAARA 346 (368)
Q Consensus 282 R~~~v---a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~ 346 (368)
..... +..-.....+.+.+.+.++-..+|...+........ ......|++.+.|. +-.|..
T Consensus 279 n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 279 NIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT----EADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp SCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC----HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHH
Confidence 65421 111122346778888888888888777632211111 23456788889884 434433
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=4.8e-06 Score=75.53 Aligned_cols=148 Identities=10% Similarity=0.047 Sum_probs=95.1
Q ss_pred cccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh--ccccccCeEEEEecC-CCCHHHHHHHHHHH
Q 044878 146 GRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK--LTEAFEPKAWVCVSD-DFDVLRISKAILES 222 (368)
Q Consensus 146 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~F~~~~wv~vs~-~~~~~~l~~~il~~ 222 (368)
|-++.++.|...+..+ +...+.++|+.|+||||+|+.+.+.. ..........+..+. ...+.. .+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 3455666777777653 35788899999999999999998752 211122334444332 233333 2445444
Q ss_pred hccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh-HHHhhcCCCCceeCCCC
Q 044878 223 ITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM-VVALTMGSGKNYELKLL 301 (368)
Q Consensus 223 l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~-~va~~~~~~~~~~l~~L 301 (368)
+...... .++-++|+|++...+....+.+...+....+.+.+|++|.+. .+...+... .+++.++
T Consensus 74 ~~~~p~~-------------~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 74 LNYSPEL-------------YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp HTSCCSS-------------SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred Hhhcccc-------------CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 4322110 156789999998887778888888887655677877776544 333333344 8999999
Q ss_pred ChhHHHHHHHHhh
Q 044878 302 SDDDCWSVFVNHA 314 (368)
Q Consensus 302 ~~~~~~~lf~~~~ 314 (368)
+.++....+.+..
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999887765
No 47
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.35 E-value=3.6e-05 Score=70.36 Aligned_cols=187 Identities=17% Similarity=0.123 Sum_probs=97.0
Q ss_pred CceecccccHHHHHHHHhc----CC--CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLK----ND--PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.++.++.|.+.+.. .+ .......+-+.++|++|+|||+||+.+++......| +.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~~~l~~---- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISSSDLVS---- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEECCSSCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEhHHHHh----
Confidence 3577888777777766531 00 000023467889999999999999999987212111 2222222110
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC-------hhh----HHHhhhhcCC---CCCCcEEEEEe
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK-------YEL----WQALKSPFMA---GAPGSRIIVTT 281 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~-------~~~----~~~l~~~l~~---~~~gs~IivTt 281 (368)
.... ........+.......++.+|+||++.... ... ...+...+.. ...+..||.||
T Consensus 85 ------~~~g--~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at 156 (322)
T 1xwi_A 85 ------KWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156 (322)
T ss_dssp ------SSCC--SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred ------hhhh--HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence 0000 000111222233333377899999995430 011 1222222221 22345566666
Q ss_pred CChHH---HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 044878 282 RSMVV---ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGL-PLAARAL 347 (368)
Q Consensus 282 R~~~v---a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 347 (368)
..... +..-.-...+.+.+.+.++-.++|....-....... ......|++.+.|. +-.|..+
T Consensus 157 n~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~----~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 157 NIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT----EADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC----HHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 54321 111123346788888888888888877632211111 34456788999987 4334444
No 48
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.35 E-value=5.4e-06 Score=75.22 Aligned_cols=167 Identities=13% Similarity=0.159 Sum_probs=95.6
Q ss_pred CceecccccHHHHHHHHhcCC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
..++|.+..++.+...+.... .........+.++|++|+||||+|+.+.+.. ...-...+.+..+...... ....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL-FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH-HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH-cCCCcceEEeecccccccc-cHHH
Confidence 357899999888888776521 0000234679999999999999999999873 1111223444444322211 1111
Q ss_pred HHHHhccCCC--CCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCCh-
Q 044878 219 ILESITLSSC--GLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRSM- 284 (368)
Q Consensus 219 il~~l~~~~~--~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~~- 284 (368)
+ ++.... .......+...+.....-+|+||++...+......+...+.... ..+.+|.||...
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~ 171 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGS 171 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTH
T ss_pred h---cCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCH
Confidence 1 111111 11222345555555566799999998777666676766553221 233477777661
Q ss_pred --------------HH--------Hhhc------CCCCceeCCCCChhHHHHHHHHh
Q 044878 285 --------------VV--------ALTM------GSGKNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 285 --------------~v--------a~~~------~~~~~~~l~~L~~~~~~~lf~~~ 313 (368)
++ ...+ .....+.+.|++.++-..++...
T Consensus 172 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 172 PLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp HHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred HHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 11 1111 11245678888888887777654
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.34 E-value=3.6e-05 Score=69.33 Aligned_cols=182 Identities=14% Similarity=0.095 Sum_probs=95.7
Q ss_pred CceecccccHHHHHHHHhcCC------CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKND------PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++.+.+.+.... ..-....+.+.|+|++|+||||||+.+.+. ....| +.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~-~~~~~---~~i~~~~l~~---- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE-CSATF---LNISAASLTS---- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH-TTCEE---EEEESTTTSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH-hCCCe---EEeeHHHHhh----
Confidence 468899988888888763310 000023457889999999999999999987 32222 2233222110
Q ss_pred HHHHHHHhccCCCCC--CChHHHHHHHHhcCeeEEEEEcCccCCh-----------hhHHHhhhh---cCCC--CCCcEE
Q 044878 216 SKAILESITLSSCGL--TDLNSVQLKLKEAKKFLIVLDDVWDKKY-----------ELWQALKSP---FMAG--APGSRI 277 (368)
Q Consensus 216 ~~~il~~l~~~~~~~--~~~~~l~~~l~~~kr~LlVlDdvw~~~~-----------~~~~~l~~~---l~~~--~~gs~I 277 (368)
...+. .....+........+.+|+||++..... .....+... ++.. ..+..|
T Consensus 93 ----------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 93 ----------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp ----------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred ----------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 00000 0011122222233678999999954311 111122221 2211 134466
Q ss_pred EEEeCChH-----HHhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHH
Q 044878 278 IVTTRSMV-----VALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARAL 347 (368)
Q Consensus 278 ivTtR~~~-----va~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 347 (368)
|.||.... +... -...+.+.+.+.++-..++...+-.....-. ......|++.+.|.+- ++..+
T Consensus 163 i~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 163 LAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD----TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC----HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHcCCCCHHHHHHH
Confidence 77776542 2222 2245677777777777777766532111111 3445678889999876 55444
No 50
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.33 E-value=3.7e-06 Score=81.04 Aligned_cols=148 Identities=14% Similarity=0.164 Sum_probs=83.8
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhcccc----ccCeEEEEecCCCCHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEA----FEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----F~~~~wv~vs~~~~~~~l~~ 217 (368)
..++||+.+++.+...|.... ..-+.|+|++|+|||+||+.+.+...... +...-++.++-.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 469999999999999997632 22357999999999999999988731111 111112222111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhcC------
Q 044878 218 AILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVALTMG------ 291 (368)
Q Consensus 218 ~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~------ 291 (368)
.... ......+..+...+...++.+|++|. ..+....+...+.. ...++|.+|..........
T Consensus 246 ---~~~~--g~~e~~~~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 ---TKYR--GEFEDRLKKVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ---cccc--chHHHHHHHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHH
Confidence 0000 01123445555666555788999991 11233334444432 2346666666544221111
Q ss_pred -CCCceeCCCCChhHHHHHHHHhh
Q 044878 292 -SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 292 -~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
-..++.+.+.+.++...++....
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHH
Confidence 11368999999999999998754
No 51
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.29 E-value=3.2e-06 Score=75.06 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=80.9
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
.++|.+..+..+.+.+..-.. ....+.|+|++|+|||+||+.+++.. ...-...+.+..+.. .. ..+...+
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~-~~~~~~~~~v~~~~~-~~-~~~~~~l-- 77 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLS-SRWQGPFISLNCAAL-NE-NLLDSEL-- 77 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTS-TTTTSCEEEEEGGGS-CH-HHHHHHH--
T ss_pred cceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhc-CccCCCeEEEecCCC-Ch-hHHHHHh--
Confidence 578999998888877654221 12347799999999999999999863 211112334444432 22 2222211
Q ss_pred hccCCCCCCC-hHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC-----------CCCcEEEEEeCChH--H--
Q 044878 223 ITLSSCGLTD-LNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG-----------APGSRIIVTTRSMV--V-- 286 (368)
Q Consensus 223 l~~~~~~~~~-~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~~~--v-- 286 (368)
++........ .......+.....-+|+||++..........+...+... ..+.+||.||...- .
T Consensus 78 ~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~ 157 (265)
T 2bjv_A 78 FGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN 157 (265)
T ss_dssp HCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred cCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence 1111000000 000001122224569999999877665555565554321 13457888887631 1
Q ss_pred --------HhhcCCCCceeCCCCCh--hHHHHH
Q 044878 287 --------ALTMGSGKNYELKLLSD--DDCWSV 309 (368)
Q Consensus 287 --------a~~~~~~~~~~l~~L~~--~~~~~l 309 (368)
...+. ...+.+.||.. ++...+
T Consensus 158 ~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l 189 (265)
T 2bjv_A 158 EGTFRADLLDALA-FDVVQLPPLRERESDIMLM 189 (265)
T ss_dssp HTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHH
T ss_pred cCCccHHHHHhhc-CcEEeCCChhhhhHHHHHH
Confidence 11111 13578899976 555444
No 52
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.28 E-value=5.8e-07 Score=72.10 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=65.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|++..++++.+.+..-.. ...-|.|+|++|+|||++|+.+++. .. -++.+.-..-....
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~-~~------~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN-GT------PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT-TS------CEECCSSTTHHHHC------
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh-CC------CeEEechhhCChHh------
Confidence 3578999988888887654221 1123779999999999999999876 22 23333221111111
Q ss_pred HhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC-CCCcEEEEEeCC
Q 044878 222 SITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~IivTtR~ 283 (368)
....+...+.-.|+||++..........+...+... ..+.++|.||..
T Consensus 67 --------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 111222224567899999877666566666555432 245678888763
No 53
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.22 E-value=6.2e-06 Score=74.86 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=85.3
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|+...+.++.+.+..... ....|.|+|++|+|||++|+.+++...+.. ...+.+.++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~-~~~v~v~~~~~~--~~l~~~--- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSARSD-RPLVTLNCAALN--ESLLES--- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSCSS-SCCCEEECSSCC--HHHHHH---
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcccC-CCeEEEeCCCCC--hHHHHH---
Confidence 4688999999998888765331 223467999999999999999998631111 122344444322 222222
Q ss_pred HhccCCCCC-CC-hHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC-----------CCCcEEEEEeCChH---
Q 044878 222 SITLSSCGL-TD-LNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG-----------APGSRIIVTTRSMV--- 285 (368)
Q Consensus 222 ~l~~~~~~~-~~-~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~~~--- 285 (368)
.+.+...+. .. .......+.....-+|+||++..........+...+... ....+||.||...-
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~ 151 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEE 151 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHH
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHH
Confidence 222211100 00 000001111224467999999877665555665555432 12467888877531
Q ss_pred H---------HhhcCCCCceeCCCCC--hhHHHHHHH
Q 044878 286 V---------ALTMGSGKNYELKLLS--DDDCWSVFV 311 (368)
Q Consensus 286 v---------a~~~~~~~~~~l~~L~--~~~~~~lf~ 311 (368)
+ ...+. ...+.+.||. .++...|+.
T Consensus 152 v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 152 VSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHH
Confidence 1 11111 2247799998 455554443
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.22 E-value=7.8e-05 Score=69.97 Aligned_cols=187 Identities=16% Similarity=0.121 Sum_probs=97.7
Q ss_pred CceecccccHHHHHHHHhcC----CC--CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKN----DP--SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++.|.+.+... +. ......+-+.|+|++|+|||+||+.+.+. ....| +.+..+.-.. ..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~-~~~~~---~~v~~~~l~~--~~ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE-SNATF---FNISAASLTS--KY 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH-TTCEE---EEECSCCC------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh-hcCcE---EEeeHHHhhc--cc
Confidence 46899999999998877321 00 00022457889999999999999999887 22221 2222222111 00
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC-----------hhhHHHhhhhcC---C-CCCCcEEEEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK-----------YELWQALKSPFM---A-GAPGSRIIVT 280 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l~---~-~~~gs~IivT 280 (368)
.+ . .......+..........+|+||++.... ......+...+. . ......||.|
T Consensus 189 -------~g-~--~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 189 -------VG-E--GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp -------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred -------cc-h--HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 00 0 00011222223333366899999995420 011122222221 1 1223456666
Q ss_pred eCChHH---HhhcCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH-HHHHHH
Q 044878 281 TRSMVV---ALTMGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL-AARALG 348 (368)
Q Consensus 281 tR~~~v---a~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 348 (368)
|..... +........+.+.+.+.++...++...+-..... -.......|++.+.|..- ++..+.
T Consensus 259 tn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 259 TNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp ESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 664321 1111222467888899999999888776332111 113455678889988554 554443
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.21 E-value=3.9e-05 Score=69.43 Aligned_cols=180 Identities=10% Similarity=0.084 Sum_probs=97.2
Q ss_pred CceecccccHHHHHHHHhcCC-------CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKND-------PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.+++|.+..++.|.+.+...- .-.....+.+.|+|++|+||||||+.+++. .... ++.++ ...
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~-~~~~-----~i~v~----~~~ 84 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE-CQAN-----FISIK----GPE 84 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH-TTCE-----EEEEC----HHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH-hCCC-----EEEEE----hHH
Confidence 357888887777777654210 000023457889999999999999999987 3322 23332 222
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC--------------hhhHHHhhhhcCC--CCCCcEEE
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK--------------YELWQALKSPFMA--GAPGSRII 278 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~--------------~~~~~~l~~~l~~--~~~gs~Ii 278 (368)
+.. ..... .......+........+.+|+||++.... ......+...+.. ...+..||
T Consensus 85 l~~----~~~g~--~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi 158 (301)
T 3cf0_A 85 LLT----MWFGE--SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 158 (301)
T ss_dssp HHH----HHHTT--CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEE
T ss_pred HHh----hhcCc--hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEE
Confidence 222 22111 11223444444444477899999995310 0112333333321 12355777
Q ss_pred EEeCChHHH-h-hcC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044878 279 VTTRSMVVA-L-TMG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 279 vTtR~~~va-~-~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
.||...+.. . ... -...+.+.+.+.++-.++|....-... ......+. .++..+.|.|-
T Consensus 159 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCHH----HHHHTCSSCCH
T ss_pred EecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchHH----HHHHHcCCCCH
Confidence 777765321 1 112 224688999998888888877653221 11112333 34556666654
No 56
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.19 E-value=2.2e-05 Score=72.20 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=93.0
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
.++|.+..++.+...+....... ..+..+.++|++|+||||||+.+.+.. ...|. ....+-.....+
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l-~~~~~---~~sg~~~~~~~~-------- 92 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASEL-QTNIH---VTSGPVLVKQGD-------- 92 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHHH-TCCEE---EEETTTCCSHHH--------
T ss_pred HccCcHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEE---EEechHhcCHHH--------
Confidence 46777666666555553310000 234568999999999999999999873 21111 111110011111
Q ss_pred hccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCChhhHHHhhhhcCCCC------------------CCcEEE-EEeC
Q 044878 223 ITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKKYELWQALKSPFMAGA------------------PGSRII-VTTR 282 (368)
Q Consensus 223 l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~Ii-vTtR 282 (368)
+...+... ++-++++|++........+.+...+.... +...++ .|++
T Consensus 93 -------------l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 93 -------------MAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp -------------HHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred -------------HHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 11111111 45678889986654434444433322110 011222 2343
Q ss_pred ChHHHhhc--CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 283 SMVVALTM--GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 283 ~~~va~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
...+...+ .....+.+++.+.++-.+++.+.+-...- .--.+....|++.+.|.|-.+..+
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHHH
Confidence 32221111 11235789999999999999887632111 112456788999999999765443
No 57
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.15 E-value=8e-06 Score=84.63 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=81.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-cc---ccccCeEEEEecCCCCHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LT---EAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~---~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
..++||++++.++++.|.... ..-+.++|++|+||||||+.+.+.. -. ......-.+.++.. .+..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----~l~~ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG----SLLA 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH----Hhhc
Confidence 468999999999999997633 2336789999999999999999873 11 11111222222210 0000
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCC--------hhhHHHhhhhcCCCCCCcEEEEEeCChHHHh
Q 044878 218 AILESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKK--------YELWQALKSPFMAGAPGSRIIVTTRSMVVAL 288 (368)
Q Consensus 218 ~il~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 288 (368)
...........+..+...+... ++.+|+||++.... ....+.+...+.. .+..+|.+|.......
T Consensus 240 ----g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~ 313 (854)
T 1qvr_A 240 ----GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYRE 313 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHH
T ss_pred ----cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhh
Confidence 0000000001122233333333 67899999996532 1111234444422 2345666665443311
Q ss_pred h-----c-CCCCceeCCCCChhHHHHHHHHh
Q 044878 289 T-----M-GSGKNYELKLLSDDDCWSVFVNH 313 (368)
Q Consensus 289 ~-----~-~~~~~~~l~~L~~~~~~~lf~~~ 313 (368)
. + .-...+.+.+++.++..+++...
T Consensus 314 ~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 314 IEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 1 1 11245889999999998888643
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.12 E-value=1.6e-05 Score=81.27 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=91.7
Q ss_pred CceecccccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA 218 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 218 (368)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+.. ...-...+.+..+.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l-~~~~~~~i~i~~s~~~~~------ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI-FGDEESMIRIDMSEYMEK------ 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH-HSCTTCEEEEEGGGGCSS------
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCcceEEEechhcccc------
Confidence 4689999999888888764321 110233478999999999999999999873 111123344444332110
Q ss_pred HHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC-----------CCCcEEEEEeCC----
Q 044878 219 ILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG-----------APGSRIIVTTRS---- 283 (368)
Q Consensus 219 il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~IivTtR~---- 283 (368)
.......+...+.....-+|+||++..........+...+..+ ....+||+||..
T Consensus 564 ----------~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~ 633 (758)
T 3pxi_A 564 ----------HSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE 633 (758)
T ss_dssp ----------CCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC
T ss_pred ----------cccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh
Confidence 0000122233344434559999999887776677776655431 134588888873
Q ss_pred -hH----HHhhc------CCCCceeCCCCChhHHHHHHHHhh
Q 044878 284 -MV----VALTM------GSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 284 -~~----va~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
.. +...+ .-..++.+.|++.++-..++....
T Consensus 634 ~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 634 KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 11 11111 122478899999998888776543
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.11 E-value=3.2e-05 Score=79.11 Aligned_cols=152 Identities=12% Similarity=0.124 Sum_probs=85.2
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEE-ecCCCCHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVC-VSDDFDVLR 214 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~-vs~~~~~~~ 214 (368)
-..++||+.+++++.+.|.... ..-+.|+|++|+||||||+.+.+.. ... .+.+.++.. .+.-
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----- 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------
T ss_pred CCCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----
Confidence 3568999999999999997632 2346799999999999999998763 111 122333221 1110
Q ss_pred HHHHHHHHhccCCCCCCChH----HHHHHHHhcCeeEEEEEcCccC--------Chhh-HHHhhhhcCCCCCCcEEEEEe
Q 044878 215 ISKAILESITLSSCGLTDLN----SVQLKLKEAKKFLIVLDDVWDK--------KYEL-WQALKSPFMAGAPGSRIIVTT 281 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~----~l~~~l~~~kr~LlVlDdvw~~--------~~~~-~~~l~~~l~~~~~gs~IivTt 281 (368)
+.. ........ .+...+...++.+|+||++... ...+ ...+...+. ..+..+|.+|
T Consensus 254 --------~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at 322 (758)
T 1r6b_X 254 --------LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGST 322 (758)
T ss_dssp ---------CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEE
T ss_pred --------hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEe
Confidence 000 00111111 2222222225789999999643 1112 222333332 2345677777
Q ss_pred CChHHHhhcCC-------CCceeCCCCChhHHHHHHHHhh
Q 044878 282 RSMVVALTMGS-------GKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 282 R~~~va~~~~~-------~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
........... ...+.+.+.+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 65543322211 1258899999999888886543
No 60
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.10 E-value=3.2e-05 Score=69.88 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=83.3
Q ss_pred CceecccccHHHHHHHHhcC--CCC------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC--
Q 044878 142 PAVYGRDEDKDRMLDMVLKN--DPS------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD-- 211 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~-- 211 (368)
..++|.+..++.+...+... ... .......+.++|++|+|||+||+.+.+.. .. ..+.+..+...+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~---~~~~i~~~~~~~~~ 90 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-NA---PFIKVEATKFTEVG 90 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH-TC---CEEEEEGGGGSSCC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh-CC---CEEEEcchhcccCC
Confidence 46889999998888777541 000 00123457799999999999999999873 21 123333332111
Q ss_pred -----HHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-CeeEEEEEcCccCChhh------------HHHhhhhcCCC--
Q 044878 212 -----VLRISKAILESITLSSCGLTDLNSVQLKLKEA-KKFLIVLDDVWDKKYEL------------WQALKSPFMAG-- 271 (368)
Q Consensus 212 -----~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdvw~~~~~~------------~~~l~~~l~~~-- 271 (368)
....+..+..... + .+... .+.+|+||++....... ...+...+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~----~---------~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 157 (310)
T 1ofh_A 91 YVGKEVDSIIRDLTDSAG----G---------AIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV 157 (310)
T ss_dssp SGGGSTTHHHHHHHHTTT----T---------CHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred ccCccHHHHHHHHHHHhh----H---------HHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeE
Confidence 1122233222210 0 01111 46799999997643222 34444444321
Q ss_pred --------CCCcEEEEEeC----Ch-----HHHhhcCCCCceeCCCCChhHHHHHHHH
Q 044878 272 --------APGSRIIVTTR----SM-----VVALTMGSGKNYELKLLSDDDCWSVFVN 312 (368)
Q Consensus 272 --------~~gs~IivTtR----~~-----~va~~~~~~~~~~l~~L~~~~~~~lf~~ 312 (368)
..+..+|.|+. .. .+...+ ...+.+.+++.++...++.+
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~--~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 158 STKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL--PIRVELTALSAADFERILTE 213 (310)
T ss_dssp EETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTC--CEEEECCCCCHHHHHHHHHS
T ss_pred ecccccccCCcEEEEEcCCcccCCcccCCHHHHhhC--CceEEcCCcCHHHHHHHHHh
Confidence 12445666642 11 122222 24689999999998888874
No 61
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.04 E-value=2.9e-05 Score=79.38 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=84.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccc---cccCeEEEEecCCCCHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTE---AFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~---~F~~~~wv~vs~~~~~~~l~~ 217 (368)
..++||+.+++++...|.... ..-+.++|++|+|||++|+.+.+.. -.. .....-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 469999999999999997632 2236799999999999999998873 111 111111222111
Q ss_pred HHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHhhcC------
Q 044878 218 AILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVALTMG------ 291 (368)
Q Consensus 218 ~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~~~~------ 291 (368)
.... .......+..+...+...++.+|++|.- ...-..+...+. ....++|.||..........
T Consensus 245 --g~~~--~G~~e~~l~~~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKY--RGEFEDRLKKVMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccc--cchHHHHHHHHHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000 0011234455555555557889999921 122233444443 22346776666544211111
Q ss_pred -CCCceeCCCCChhHHHHHHHHhh
Q 044878 292 -SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 292 -~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
-...+.+.+.+.++..+++....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11468999999999999998654
No 62
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.01 E-value=4.8e-06 Score=67.22 Aligned_cols=86 Identities=17% Similarity=0.079 Sum_probs=50.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
..+.|+|+.|+|||||++.++.......+ ..+++....-... .+.. +.-+||
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~-~~~~~~~~~~~~~--------------------------~~~~-~~~lLi 88 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGK-NAAYIDAASMPLT--------------------------DAAF-EAEYLA 88 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTC-CEEEEETTTSCCC--------------------------GGGG-GCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCC-cEEEEcHHHhhHH--------------------------HHHh-CCCEEE
Confidence 47899999999999999999987411111 2455554332211 0111 456889
Q ss_pred EEcCccCChhhHHHhhhhcCC-CCCCc-EEEEEeCC
Q 044878 250 LDDVWDKKYELWQALKSPFMA-GAPGS-RIIVTTRS 283 (368)
Q Consensus 250 lDdvw~~~~~~~~~l~~~l~~-~~~gs-~IivTtR~ 283 (368)
|||+.......-+.+...+.. ...|. .||+||+.
T Consensus 89 lDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 89 VDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp EESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred EeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 999966543333333333321 12333 48888874
No 63
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00027 Score=65.98 Aligned_cols=174 Identities=17% Similarity=0.137 Sum_probs=96.0
Q ss_pred CceecccccHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC---
Q 044878 142 PAVYGRDEDKDRMLDMVLK----ND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD--- 211 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~--- 211 (368)
.++.|.++.+++|.+.+.- ++ .-+...++-+.++|++|+|||.||+++.+. ...+| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e-~~~~f---~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH-TDCKF---IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH-HTCEE---EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh-hCCCc---eEEEhHHhhcccc
Confidence 4578888888888766432 10 000033466889999999999999999998 33333 3333332111
Q ss_pred --HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC--------h--hh----HHHhhhhcC--CCCC
Q 044878 212 --VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK--------Y--EL----WQALKSPFM--AGAP 273 (368)
Q Consensus 212 --~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~--------~--~~----~~~l~~~l~--~~~~ 273 (368)
....+ ..+....+...+++|+||++...- . .. ...+...+. ....
T Consensus 224 Gese~~v-----------------r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 224 GEGSRMV-----------------RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp THHHHHH-----------------HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred chHHHHH-----------------HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 11222 222233333378999999996421 0 01 122222222 1234
Q ss_pred CcEEEEEeCChHH---Hhh--cCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 274 GSRIIVTTRSMVV---ALT--MGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 274 gs~IivTtR~~~v---a~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
+-.||.||...+. |-. -.-...+.+..-+.++-.++|..+.-. .......++ ..|++.+.|+-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK-MNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SBCCSSCCH----HHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC-CCCCccCCH----HHHHHHCCCCC
Confidence 5567777776532 211 123357888888888888888776522 222221234 45677787754
No 64
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.94 E-value=3.2e-05 Score=74.73 Aligned_cols=185 Identities=13% Similarity=0.112 Sum_probs=97.2
Q ss_pred CceecccccHHHHHHHHhcCCC-------CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDP-------SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
..++|.+..+++|.+++...-. -.....+-+.|+|++|+|||+||+.+.+. ....| +.+..+ .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~-~~~~f---v~vn~~------~ 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE-TGAFF---FLINGP------E 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH-CSSEE---EEEEHH------H
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH-hCCCE---EEEEch------H
Confidence 3588999999998887653200 00023456889999999999999999887 32222 222211 1
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC-----------hhhHHHhhhhcCC--CCCCcEEEEEe
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK-----------YELWQALKSPFMA--GAPGSRIIVTT 281 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~-----------~~~~~~l~~~l~~--~~~gs~IivTt 281 (368)
+ ...+... .......+.......++.+|+||++.... ......+...+.. ...+..||.||
T Consensus 274 l----~~~~~g~--~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 274 I----MSKLAGE--SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp H----HTSCTTH--HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred h----hhhhcch--hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 1 1110000 00011122222233367899999993211 0122334333331 22345666677
Q ss_pred CChHH-Hhhc----CCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCC-hHHHHHH
Q 044878 282 RSMVV-ALTM----GSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGL-PLAARAL 347 (368)
Q Consensus 282 R~~~v-a~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 347 (368)
....- ...+ .-...+.+.+.+.++-.++|..++-... ......+ .++++.+.|. +-.+..+
T Consensus 348 n~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~l----~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVDL----EQVANETHGHVGADLAAL 414 (489)
T ss_dssp SCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCCH----HHHHHTCTTCCHHHHHHH
T ss_pred CCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-CcchhhH----HHHHHHccCCcHHHHHHH
Confidence 65532 1111 1223688999999999999987763221 1111233 3466677774 4444443
No 65
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00017 Score=68.19 Aligned_cols=174 Identities=20% Similarity=0.182 Sum_probs=90.7
Q ss_pred CceecccccHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC---
Q 044878 142 PAVYGRDEDKDRMLDMVLK----ND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD--- 211 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~--- 211 (368)
.++.|.++.+++|.+.+.. .+ .-+...++-+.++|++|+|||+||+++.+. ..-+| +.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~-~~~~~---~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS-TKAAF---IRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH-HTCEE---EEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH-hCCCe---EEEecchhhcccc
Confidence 4688999888888776532 10 000134567889999999999999999987 33222 3333332111
Q ss_pred --HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC----------Chhh----HHHhhhhcC--CCCC
Q 044878 212 --VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK----------KYEL----WQALKSPFM--AGAP 273 (368)
Q Consensus 212 --~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~----------~~~~----~~~l~~~l~--~~~~ 273 (368)
....++ .+........+++|++|++... .... ...+...+. ....
T Consensus 248 Ge~e~~ir-----------------~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 248 GEGPRMVR-----------------DVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp SHHHHHHH-----------------HHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred chhHHHHH-----------------HHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 111122 2222333337899999998421 0011 222322222 2234
Q ss_pred CcEEEEEeCChHHH--hhcCCC---CceeCCCCChhHH-HHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 274 GSRIIVTTRSMVVA--LTMGSG---KNYELKLLSDDDC-WSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 274 gs~IivTtR~~~va--~~~~~~---~~~~l~~L~~~~~-~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
|-.||.||...+.. .....+ ..+++..++..+. ..+|..+.-. .......++ ..|++.+.|+-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~-~~l~~~~dl----~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK-MSLAPEADL----DSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS-SCBCTTCCH----HHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHHCCCCC
Confidence 55677777754321 112222 3567766765555 4455544422 221111234 45667777754
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.93 E-value=0.00027 Score=66.86 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=94.9
Q ss_pred CceecccccHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC---
Q 044878 142 PAVYGRDEDKDRMLDMVLK----ND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD--- 211 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~--- 211 (368)
.++.|.++.+++|.+.+.. .+ .-+...++-|.++|++|+|||+||+++.+.. .-+| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-~~~~---~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-GANF---IFSPASGIVDKYI 256 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEE---EEEEGGGTCCSSS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCE---EEEehhhhccccc
Confidence 4678888888887776532 10 0001345778899999999999999999983 3222 3333332111
Q ss_pred --HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC----------hh----hHHHhhhhcC--CCCC
Q 044878 212 --VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK----------YE----LWQALKSPFM--AGAP 273 (368)
Q Consensus 212 --~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~----------~~----~~~~l~~~l~--~~~~ 273 (368)
.... +..+........+++|++|++...- .. ....+...+. ....
T Consensus 257 Gese~~-----------------ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 257 GESARI-----------------IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp SHHHHH-----------------HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred hHHHHH-----------------HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 1111 1222223333388999999995320 01 1222333332 2234
Q ss_pred CcEEEEEeCChHHHhh--cCCC---CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 274 GSRIIVTTRSMVVALT--MGSG---KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 274 gs~IivTtR~~~va~~--~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
+..||.||...+.... ...+ ..+++..-+.++-.++|..+.-.... ....++ ..|++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCCC
Confidence 5577888876543211 1221 35777777777777788766533221 111234 45677787754
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.88 E-value=1.6e-05 Score=70.61 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=90.5
Q ss_pred CceecccccHHHHHHHHhcCCCC------CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPS------DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++.+.+.+..-... .....+-+.|+|++|+|||+||+.+++.. ...|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-~~~~~---~v~~~~~~----- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-HVPFF---SMGGSSFI----- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH-TCCCC---CCCSCTTT-----
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCEE---EechHHHH-----
Confidence 46888888877777765410000 00112237799999999999999999873 22221 11111100
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCChh---------------hHHHhhhhcCC---CCCCcEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKYE---------------LWQALKSPFMA---GAPGSRI 277 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~---------------~~~~l~~~l~~---~~~gs~I 277 (368)
...... .......+........+.+|+||++...... ....+...+.. ......|
T Consensus 82 -----~~~~~~--~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 154 (268)
T 2r62_A 82 -----EMFVGL--GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154 (268)
T ss_dssp -----TSCSSS--CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEE
T ss_pred -----Hhhcch--HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEE
Confidence 000000 1112223333344436789999999543211 12223322221 1122456
Q ss_pred EEEeCChHHH--hhcC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044878 278 IVTTRSMVVA--LTMG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 278 ivTtR~~~va--~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
|.||...... .... -...+.+.+.+.++-.+++...+-... ......+ ..|++.+.|.|-
T Consensus 155 i~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 155 LAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK-LANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp EECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC-CCSSCCT----TTTTSSSCSSCH
T ss_pred EEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC-CCCccCH----HHHHHHcCCCCH
Confidence 6677655321 1111 224678888898888888877653211 1111112 236667777654
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.88 E-value=0.00016 Score=69.36 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=60.9
Q ss_pred eEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe---------CC----h-----HHHhhcCCCCceeCCCCChhHHH
Q 044878 246 FLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT---------RS----M-----VVALTMGSGKNYELKLLSDDDCW 307 (368)
Q Consensus 246 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt---------R~----~-----~va~~~~~~~~~~l~~L~~~~~~ 307 (368)
-++++|++...+.+..+.+...+...... -+|+.| .+ . .+...+ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 38999999888777888888877654444 344344 11 1 122222 34799999999999
Q ss_pred HHHHHhhcCCCCCCCCccHHHHHHHHHHHc-CCChHHHHHHH
Q 044878 308 SVFVNHAFEGRDAGTHGNFESTRQRVVEKR-KGLPLAARALG 348 (368)
Q Consensus 308 ~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c-~GlPLai~~~~ 348 (368)
+++...+-..... --++....|++.+ .|.|..+..+.
T Consensus 373 ~iL~~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 373 QIIKIRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHHH
Confidence 9998775211111 1144566788888 88888665543
No 69
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00025 Score=67.14 Aligned_cols=173 Identities=15% Similarity=0.096 Sum_probs=93.4
Q ss_pred ceecccccHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC----C
Q 044878 143 AVYGRDEDKDRMLDMVLK----ND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF----D 211 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~----~ 211 (368)
++.|.++.+++|.+.+.. .+ .-+...++-|.++|++|+|||+||+++.+. ...+| +.+..+.-. .
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e-~~~~f---i~vs~s~L~sk~vG 285 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR-TDATF---IRVIGSELVQKYVG 285 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH-HTCEE---EEEEGGGGCCCSSS
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc-cCCCe---EEEEhHHhhcccCC
Confidence 578888888888775421 10 000134567889999999999999999998 33332 333322211 1
Q ss_pred -HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC--------h--h----hHHHhhhhcC--CCCCC
Q 044878 212 -VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK--------Y--E----LWQALKSPFM--AGAPG 274 (368)
Q Consensus 212 -~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~--------~--~----~~~~l~~~l~--~~~~g 274 (368)
....++ .+........+++|++|++...- . . ....+...+. ....+
T Consensus 286 esek~ir-----------------~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 286 EGARMVR-----------------ELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp HHHHHHH-----------------HHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred HHHHHHH-----------------HHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 111222 22222333378999999995321 0 0 1112222222 12234
Q ss_pred cEEEEEeCChHH---Hhh--cCCCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 275 SRIIVTTRSMVV---ALT--MGSGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 275 s~IivTtR~~~v---a~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
..||.||...+. |.. -.-...+++...+.++-.++|..+.-. .......++ ..|++.|.|+-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~-~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS-MSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-SCBCSSCCH----HHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-CCCCCCCCH----HHHHHHCCCCC
Confidence 456667765432 211 122356788887888888888776532 221121234 44677888754
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.74 E-value=0.00032 Score=64.09 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..++|+++.++.+...+.... -+.++|++|+|||+||+.+.+. ....| ..+..+......++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~~-~~~~~---~~i~~~~~~~~~~l~g---- 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAKT-MDLDF---HRIQFTPDLLPSDLIG---- 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHHH-TTCCE---EEEECCTTCCHHHHHE----
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHHH-hCCCe---EEEecCCCCChhhcCC----
Confidence 468999999999888876532 3789999999999999999886 22222 2233333333332211
Q ss_pred HhccCCCCCCChHHHHHHHHhc--CeeEEEEEcCccCChhhHHHhhhhcCC-----------CCCCcEEEEEeCChH---
Q 044878 222 SITLSSCGLTDLNSVQLKLKEA--KKFLIVLDDVWDKKYELWQALKSPFMA-----------GAPGSRIIVTTRSMV--- 285 (368)
Q Consensus 222 ~l~~~~~~~~~~~~l~~~l~~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~-----------~~~gs~IivTtR~~~--- 285 (368)
....... ..... .... ...++++|++...+......+...+.. ......||.|+....
T Consensus 91 ~~~~~~~-~~~~~-----~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~ 164 (331)
T 2r44_A 91 TMIYNQH-KGNFE-----VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp EEEEETT-TTEEE-----EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred ceeecCC-CCceE-----eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccC
Confidence 1100000 00000 0000 235899999987766555555554432 123445665665221
Q ss_pred ---HH-hhcCC-CCceeCCCCChhHHHHHHHHhhc
Q 044878 286 ---VA-LTMGS-GKNYELKLLSDDDCWSVFVNHAF 315 (368)
Q Consensus 286 ---va-~~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 315 (368)
+. ....- ...+.+.+.+.++-.+++.+...
T Consensus 165 ~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 165 TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 10 01111 12488999999999998888763
No 71
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.74 E-value=1.5e-05 Score=72.39 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=57.6
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhc-cccccCeEEEEecCCCCHHHHHHHHHHHhccCCC
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKL-TEAFEPKAWVCVSDDFDVLRISKAILESITLSSC 228 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~ 228 (368)
....+.+++..... .....+.|+|++|+|||+||+.+++... ... ..+.+++++ +++..+.......
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~~~g-~~v~~~~~~------~l~~~l~~~~~~~-- 203 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSEKKG-VSTTLLHFP------SFAIDVKNAISNG-- 203 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHHHSC-CCEEEEEHH------HHHHHHHCCCC----
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHHhcC-CcEEEEEHH------HHHHHHHHHhccc--
Confidence 33444555554221 1245788999999999999999998743 332 334455443 3444333222111
Q ss_pred CCCChHHHHHHHHhcCeeEEEEEcCccCChhhHH--Hhhh-hcCCC-CCCcEEEEEeCC
Q 044878 229 GLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQ--ALKS-PFMAG-APGSRIIVTTRS 283 (368)
Q Consensus 229 ~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~--~l~~-~l~~~-~~gs~IivTtR~ 283 (368)
........+. +.-+|||||+.......|. .+.. .+... ..+..+|+||..
T Consensus 204 ---~~~~~~~~~~--~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 204 ---SVKEEIDAVK--NVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp -----CCTTHHHH--TSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred ---hHHHHHHHhc--CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 1111122222 3448999999544333332 1222 22111 124468888875
No 72
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.72 E-value=0.0006 Score=59.83 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=88.0
Q ss_pred CceecccccHHHHHHHH---hcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMV---LKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.+..++++.+.+ ..... -+....+-+.|+|++|+||||||+.+.+.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-~~~~---~~i~~~~~~~---- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPF---FTISGSDFVE---- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH-TCCE---EEECSCSSTT----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-CCCE---EEEeHHHHHH----
Confidence 35777776666555443 22110 000123347899999999999999999873 2222 2222211100
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh--------------hhHHHhhhhcCC--CCCCcEEEE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY--------------ELWQALKSPFMA--GAPGSRIIV 279 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~~--~~~gs~Iiv 279 (368)
.... ........+.+......+.++++|++..... .....+...+.. ...+..||.
T Consensus 84 ------~~~~--~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~ 155 (257)
T 1lv7_A 84 ------MFVG--VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIA 155 (257)
T ss_dssp ------SCCC--CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEE
T ss_pred ------Hhhh--hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEE
Confidence 0000 0001112222222222567999999832110 111222222211 123456777
Q ss_pred EeCChHHH-hh-cC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCC-ChHHHHH
Q 044878 280 TTRSMVVA-LT-MG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKG-LPLAARA 346 (368)
Q Consensus 280 TtR~~~va-~~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~ 346 (368)
||...+.. .. .. -...+.+.+.+.++-.+++....-.. ....... ...++..+.| .+--+..
T Consensus 156 ~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 156 ATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred eeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCcccc----HHHHHHHcCCCCHHHHHH
Confidence 77655311 11 11 12357787778777777776665221 1111112 2346778888 6654443
No 73
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.72 E-value=0.00081 Score=64.49 Aligned_cols=178 Identities=15% Similarity=0.132 Sum_probs=90.9
Q ss_pred CceecccccHHHHHHHHh---cCC----CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVL---KND----PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~---~~~----~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.+++|.++.++++.+.+. ... -+. ..++-+.|+|++|+||||||+.+.+.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~-~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEA-NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHH-TCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHc-CCCe---eeCCHHHHHHH--
Confidence 357777766666555432 110 000 122347799999999999999999873 2222 23333221110
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh--------------hhHHHhhhhcC--CCCCCcEEE
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY--------------ELWQALKSPFM--AGAPGSRII 278 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~--------------~~~~~l~~~l~--~~~~gs~Ii 278 (368)
... ........+........+.+|+||++..... .....+...+. ....+..||
T Consensus 89 --------~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVI 158 (476)
T 2ce7_A 89 --------FVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVM 158 (476)
T ss_dssp --------CTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEE
T ss_pred --------Hhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEE
Confidence 000 0000112222333333778999999954211 11233333222 112455777
Q ss_pred EEeCChHHHh--hcCC---CCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 279 VTTRSMVVAL--TMGS---GKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 279 vTtR~~~va~--~~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
.||...+... .... ...+.+.+.+.++-.++|..++-... .....++ ..|++.+.|..
T Consensus 159 aaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~l----~~la~~t~G~s 221 (476)
T 2ce7_A 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVNL----EIIAKRTPGFV 221 (476)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCCH----HHHHHTCTTCC
T ss_pred EecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-CcchhhH----HHHHHhcCCCc
Confidence 7777764321 1122 23678888887777778876653221 1111123 33777888877
No 74
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00014 Score=68.84 Aligned_cols=174 Identities=15% Similarity=0.176 Sum_probs=92.3
Q ss_pred CceecccccHHHHHHHHh----cCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC----
Q 044878 142 PAVYGRDEDKDRMLDMVL----KNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF---- 210 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~----~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~---- 210 (368)
.++.|.++.+++|.+.+. ..+. -+...++-|.++||+|+|||+||+++.+.. ..+| +.+..+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-~~~f---~~v~~s~l~~~~v 256 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-NATF---LKLAAPQLVQMYI 256 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-TCEE---EEEEGGGGCSSCS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-CCCE---EEEehhhhhhccc
Confidence 468899988888877532 2110 001345778899999999999999999983 3222 233322211
Q ss_pred C-HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccC-------Ch---hh----HHHhhhhcCC--CCC
Q 044878 211 D-VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDK-------KY---EL----WQALKSPFMA--GAP 273 (368)
Q Consensus 211 ~-~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~-------~~---~~----~~~l~~~l~~--~~~ 273 (368)
. ....++. +........+++|++|++..- .. .. ...+...+.. ...
T Consensus 257 Gese~~ir~-----------------lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 257 GEGAKLVRD-----------------AFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp SHHHHHHHH-----------------HHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred chHHHHHHH-----------------HHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 1 1112222 222222337899999998421 00 01 1223333321 123
Q ss_pred CcEEEEEeCChHHHhh--cCCC---CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 274 GSRIIVTTRSMVVALT--MGSG---KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 274 gs~IivTtR~~~va~~--~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
+--||.||...+.... ...+ ..+++..-+.++-.++|..+.-... ....-++ ..|++.+.|+-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~-~~~dvdl----~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMT-TDDDINW----QELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSC-BCSCCCH----HHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCCC
Confidence 4456667776543211 1222 3577877777777788766542211 1111233 45677787753
No 75
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00039 Score=65.24 Aligned_cols=174 Identities=14% Similarity=0.135 Sum_probs=92.5
Q ss_pred CceecccccHHHHHHHHhc----CCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC----
Q 044878 142 PAVYGRDEDKDRMLDMVLK----NDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF---- 210 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~---- 210 (368)
.++.|.++.+++|.+.+.. .+. -+...++=|.++|++|+|||.||+++.+.. ..+| +.+..+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~f---i~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT-SATF---LRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH-TCEE---EEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh-CCCE---EEEEHHHhhhccC
Confidence 3577888888887775432 110 001345678899999999999999999983 3222 223322211
Q ss_pred -CHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCC----------hhh----HHHhhhhcC--CCCC
Q 044878 211 -DVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKK----------YEL----WQALKSPFM--AGAP 273 (368)
Q Consensus 211 -~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~----------~~~----~~~l~~~l~--~~~~ 273 (368)
.....++. +.....+..+++|++|++...- ... ...+...+. ....
T Consensus 258 Gesek~ir~-----------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 258 GDGPRLCRQ-----------------IFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp SHHHHHHHH-----------------HHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred chHHHHHHH-----------------HHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 11122222 2222233378999999985320 001 122222221 2233
Q ss_pred CcEEEEEeCChHHHhh--cCCC---CceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 274 GSRIIVTTRSMVVALT--MGSG---KNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 274 gs~IivTtR~~~va~~--~~~~---~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
+..||.||...+.... ...+ ..+.+..-+.++-.++|..+.-. .......++ ..|++.+.|+-
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~-~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK-MNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT-SCBCSCCCH----HHHHHHCCSCC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC-CCCCCcCCH----HHHHHhCCCCC
Confidence 4567777776553211 1222 34677777777777888766522 221222244 34667777754
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.62 E-value=0.00024 Score=73.52 Aligned_cols=135 Identities=14% Similarity=0.210 Sum_probs=75.2
Q ss_pred ceecccccHHHHHHHHhcCC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
.++|.+..++.+...+.... .........+.|+|++|+|||+||+.+.+...... ...+.+..+...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~-~~~i~i~~~~~~~~~-----~ 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE-EAMIRIDMTEYMEKH-----A 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG-GGEEEECTTTCCSSG-----G
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC-CcEEEEechhccchh-----H
Confidence 57899998888888775421 00002346788999999999999999998731111 122334333322110 0
Q ss_pred HHHhccCCC---CCCChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCC
Q 044878 220 LESITLSSC---GLTDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRS 283 (368)
Q Consensus 220 l~~l~~~~~---~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 283 (368)
...+....+ +......+...+.....-+|+||++...+......+...+..+. .+..||+||..
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 011111000 11111234445555455689999998877777777777665331 24458888775
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.61 E-value=0.00015 Score=74.10 Aligned_cols=165 Identities=12% Similarity=0.133 Sum_probs=93.5
Q ss_pred CCceecccccHHHHHHHHhcCCC---CCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHH
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDP---SDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISK 217 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 217 (368)
...++|.++.++.+...+..... ........+.++|++|+|||+||+.+.+.. . ...+-+..+.......
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-T---CEEEEEEGGGCSSSSC---
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-c---CCEEEEechhhcchhh---
Confidence 35688999988888877653210 000234578999999999999999999873 2 1223334333211000
Q ss_pred HHHHHhccCCCCCC---ChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCCC-----------CCcEEEEEeCC
Q 044878 218 AILESITLSSCGLT---DLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAGA-----------PGSRIIVTTRS 283 (368)
Q Consensus 218 ~il~~l~~~~~~~~---~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~IivTtR~ 283 (368)
...+.+..++.. ....+...+......+|+||++.....+..+.+...+..+. ....||+||..
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred --HhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 000111111100 01223445555466799999998777666777766654221 23457778764
Q ss_pred hH----------------------HHhhc------CCCCceeCCCCChhHHHHHHHHhh
Q 044878 284 MV----------------------VALTM------GSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 284 ~~----------------------va~~~------~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
.. +...+ .....+.+.|++.++-..++....
T Consensus 608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp SCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 11 11111 112468899999988887776654
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.50 E-value=0.00056 Score=67.02 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=77.0
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
+++|.++..+.+.+.+.-..-.......++.++|++|+||||||+.+.... ...| .-+.++...+...+.......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~---~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL-GRKF---VRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH-TCEE---EEECCCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCe---EEEEecccchhhhhhhHHHHH
Confidence 467777766666554322110000234689999999999999999999873 2222 122222211111111110000
Q ss_pred hccCCCCCCChHHHHHHHHhc--CeeEEEEEcCccCChh----hHHHhhhhcCCCC---------------CCcEEEEEe
Q 044878 223 ITLSSCGLTDLNSVQLKLKEA--KKFLIVLDDVWDKKYE----LWQALKSPFMAGA---------------PGSRIIVTT 281 (368)
Q Consensus 223 l~~~~~~~~~~~~l~~~l~~~--kr~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~IivTt 281 (368)
++ .....+...+... ..-+++||++...... ....+...+.... ....||.||
T Consensus 158 ig------~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~tt 231 (543)
T 3m6a_A 158 VG------AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATA 231 (543)
T ss_dssp ------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEEC
T ss_pred hc------cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEecc
Confidence 11 0011112222222 3448899999765332 2234444432111 234566666
Q ss_pred CChH-----HHhhcCCCCceeCCCCChhHHHHHHHHhh
Q 044878 282 RSMV-----VALTMGSGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 282 R~~~-----va~~~~~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
.... +...+ ..+.+.+++.++-..++..+.
T Consensus 232 N~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 232 NNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred CccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 6532 22222 368999999998888887754
No 79
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.48 E-value=0.0012 Score=61.36 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+.++|++|+|||+||+.+.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999987
No 80
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.47 E-value=0.00054 Score=66.16 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=36.5
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++|.++.++.+...+... .-+.++|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 45899999999888887653 24789999999999999999986
No 81
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.46 E-value=0.00056 Score=62.79 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=32.2
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|.+..+..+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 358888876655444443321 123889999999999999999986
No 82
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.41 E-value=0.0042 Score=56.88 Aligned_cols=155 Identities=10% Similarity=-0.077 Sum_probs=98.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc----
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA---- 243 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~---- 243 (368)
-.++..++|+.|.||++.+..+.+......|+....+.+....+..+ +...+...
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------------------l~~~~~~~plf~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNA---------------------IFSLCQAMSLFA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHH---------------------HHHHHHHHHHCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHH---------------------HHHHhcCcCCcc
Confidence 34688899999999999999998764222343222222333333333 33332221
Q ss_pred CeeEEEEEcCcc-CChhhHHHhhhhcCCCCCCcEEEEEeCC-------hHHHhhcC-CCCceeCCCCChhHHHHHHHHhh
Q 044878 244 KKFLIVLDDVWD-KKYELWQALKSPFMAGAPGSRIIVTTRS-------MVVALTMG-SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 244 kr~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~IivTtR~-------~~va~~~~-~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
++-++|+|++.. .+...++.+...+..-.+++.+|++|.. ..+...+. ....++..+++.++....+...+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 667889999976 5556788888888665567777776643 23443433 23578999999998887777765
Q ss_pred cCCCCCCCCccHHHHHHHHHHHcCCChHHHHHH
Q 044878 315 FEGRDAGTHGNFESTRQRVVEKRKGLPLAARAL 347 (368)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 347 (368)
-...- .--.+....|++.++|.+..+...
T Consensus 156 ~~~g~----~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNL----ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTC----EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhchHHHHHHHH
Confidence 32211 111456677899999988877653
No 83
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.40 E-value=0.00044 Score=62.15 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..++.+.++|++|+|||+||+.+++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 445678899999999999999999873
No 84
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.32 E-value=0.00096 Score=56.76 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=49.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhc-----------cCCC-CCCChHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESIT-----------LSSC-GLTDLNS 235 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~-----------~~~~-~~~~~~~ 235 (368)
.-.++.|+|++|+|||||+..+... .-..++|++....++...+.. +...++ .... ...+...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLL----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 3468999999999999999998862 123567777666555554433 333222 1111 1222223
Q ss_pred HHHHHHhc---CeeEEEEEcCcc
Q 044878 236 VQLKLKEA---KKFLIVLDDVWD 255 (368)
Q Consensus 236 l~~~l~~~---kr~LlVlDdvw~ 255 (368)
....+... +.-+||||.+-.
T Consensus 94 ~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 94 VIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHhhcCCCEEEEcCcHH
Confidence 33333322 377999999854
No 85
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.22 E-value=0.0011 Score=56.78 Aligned_cols=111 Identities=16% Similarity=0.052 Sum_probs=58.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC---------------------
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC--------------------- 228 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~--------------------- 228 (368)
.++.|+|++|+|||||++.+.... ...-..+.|+.... ....+...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG-LRDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQW 99 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-HHHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-HHCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCcee
Confidence 589999999999999999998653 11112455655433 3444433332 3221100
Q ss_pred --CCCChHHHHHHHHh----cCe--eEEEEEcCccC---ChhhHHHhhhhcCC--CCCCcEEEEEeCCh
Q 044878 229 --GLTDLNSVQLKLKE----AKK--FLIVLDDVWDK---KYELWQALKSPFMA--GAPGSRIIVTTRSM 284 (368)
Q Consensus 229 --~~~~~~~l~~~l~~----~kr--~LlVlDdvw~~---~~~~~~~l~~~l~~--~~~gs~IivTtR~~ 284 (368)
...+..++...+.. .+. .+||||.+-.. +......+...+.. ...|..||++|...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 100 SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134444433332 233 49999998532 22233333333321 13577899999876
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.20 E-value=0.001 Score=68.22 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=81.4
Q ss_pred CceecccccHHHHHHHHhc----CC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHH
Q 044878 142 PAVYGRDEDKDRMLDMVLK----ND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLR 214 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~----~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~ 214 (368)
.+++|.+..+++|.+++.. .+ .-.......+.|+|++|+||||||+.+... ....| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~-l~~~~---i~v~~~~------ 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE-TGAFF---FLINGPE------ 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT-TTCEE---EEEEHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH-cCCcE---EEEEchH------
Confidence 3588999999998887753 10 000033456899999999999999999886 33322 2222111
Q ss_pred HHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh------h-----hHHHhhhhcCCC--CCCcEEEEEe
Q 044878 215 ISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY------E-----LWQALKSPFMAG--APGSRIIVTT 281 (368)
Q Consensus 215 l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~------~-----~~~~l~~~l~~~--~~gs~IivTt 281 (368)
+ ...... ........+.+........++++|++..... . ....+...+... ..+..+|.||
T Consensus 274 l----~~~~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~at 347 (806)
T 1ypw_A 274 I----MSKLAG--ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp H----SSSSTT--HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEEC
T ss_pred h----hhhhhh--hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEeccc
Confidence 0 000000 0000111222222222678999999943210 0 112232222211 2234566666
Q ss_pred CChHHH-hhcC----CCCceeCCCCChhHHHHHHHHhh
Q 044878 282 RSMVVA-LTMG----SGKNYELKLLSDDDCWSVFVNHA 314 (368)
Q Consensus 282 R~~~va-~~~~----~~~~~~l~~L~~~~~~~lf~~~~ 314 (368)
...+-. ..+. -...+.+...+.++-.+++...+
T Consensus 348 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 348 NRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp SCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred CCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 554211 1111 11346788888888888887665
No 87
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.17 E-value=0.00043 Score=62.53 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=26.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEe
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCV 206 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~v 206 (368)
-+++.|+|++|+||||||.++... .-..++|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA----LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH----HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh----CCCCEEEEEe
Confidence 356789999999999999999875 1224567776
No 88
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.11 E-value=0.0044 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|.|++|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 54
No 89
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.11 E-value=0.0027 Score=64.56 Aligned_cols=174 Identities=12% Similarity=0.084 Sum_probs=92.5
Q ss_pred ceecccccHHHHHHHHh----cCC---CCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC----CC-
Q 044878 143 AVYGRDEDKDRMLDMVL----KND---PSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD----DF- 210 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~----~~~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~----~~- 210 (368)
++.|.++.+++|.+++. ..+ .-....++-|.++|++|+|||+||+.+.+. ...+| +.|..+. ..
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e-lg~~~---~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE-TGAFF---FLINGPEIMSKLAG 280 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT-TTCEE---EEEEHHHHHSSCTT
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH-hCCeE---EEEEhHHhhcccch
Confidence 57788888888877642 221 001134577889999999999999999987 33332 3333211 11
Q ss_pred CHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEEcCccCCh-------h----hHHHhhhhcCC--CCCCcEE
Q 044878 211 DVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLDDVWDKKY-------E----LWQALKSPFMA--GAPGSRI 277 (368)
Q Consensus 211 ~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlDdvw~~~~-------~----~~~~l~~~l~~--~~~gs~I 277 (368)
.....++. +........+.+|+||++..--. + ....+...+.. ...+--|
T Consensus 281 ese~~lr~-----------------lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 281 ESESNLRK-----------------AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp HHHHHHHH-----------------HHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred HHHHHHHH-----------------HHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11111222 22222223789999999954210 1 11222222211 1223455
Q ss_pred EEEeCChHHH-hhc-C---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCChH
Q 044878 278 IVTTRSMVVA-LTM-G---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLPL 342 (368)
Q Consensus 278 ivTtR~~~va-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 342 (368)
|.||...+.. ..+ . -...+++...+.++-.++|..+.-. .......++ ..|++++.|+.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-~~~~~dvdl----~~lA~~T~Gfsg 408 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVDL----EQVANETHGHVG 408 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-SEECTTCCH----HHHHHHCCSCCH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-CCCCcccCH----HHHHHhcCCCCH
Confidence 6666654321 111 1 1235788888888888888766422 111121233 457778888653
No 90
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.08 E-value=0.004 Score=60.03 Aligned_cols=176 Identities=14% Similarity=0.098 Sum_probs=85.8
Q ss_pred CceecccccHHHHHHHH---hcCCC-C--CCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHH
Q 044878 142 PAVYGRDEDKDRMLDMV---LKNDP-S--DAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L---~~~~~-~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l 215 (368)
.+++|.++.+.++.+.. ..... . +..-.+-+.|+|++|+||||||+.+... ... ..+.+..+.-.+.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~-~~~---~~i~i~g~~~~~~--- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE-ARV---PFITASGSDFVEM--- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH-TTC---CEEEEEGGGGTSS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH-hCC---CEEEEehhHHHHh---
Confidence 45778776666555443 22100 0 0011223889999999999999999987 321 2233332221000
Q ss_pred HHHHHHHhccCCCCCCChHHHHHHHHhc---CeeEEEEEcCccCC----------hhhH----HHhhhhcCCC--CCCcE
Q 044878 216 SKAILESITLSSCGLTDLNSVQLKLKEA---KKFLIVLDDVWDKK----------YELW----QALKSPFMAG--APGSR 276 (368)
Q Consensus 216 ~~~il~~l~~~~~~~~~~~~l~~~l~~~---kr~LlVlDdvw~~~----------~~~~----~~l~~~l~~~--~~gs~ 276 (368)
........+...+... .+.++++|++.... ...+ ..+...+... ..+..
T Consensus 104 ------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~vi 171 (499)
T 2dhr_A 104 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 171 (499)
T ss_dssp ------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCE
T ss_pred ------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEE
Confidence 0000000111111111 35799999995321 1112 2333333322 23345
Q ss_pred EEEEeCChHHHhh--cC---CCCceeCCCCChhHHHHHHHHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 277 IIVTTRSMVVALT--MG---SGKNYELKLLSDDDCWSVFVNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 277 IivTtR~~~va~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
++.||...+.... .. -...+.+.+.+.++-.++|..++-.. ....... ...|+..+.|+.
T Consensus 172 viAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 172 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp EEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred EEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 6666766654211 11 22467888888888888887665221 1111111 234666777765
No 91
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.07 E-value=0.00059 Score=57.64 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.3
Q ss_pred ccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 147 RDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
|++.++.|.+.+..... ....+++|+|+.|+|||||++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44566777777765422 45689999999999999999998865
No 92
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.06 E-value=0.0071 Score=53.63 Aligned_cols=125 Identities=17% Similarity=0.088 Sum_probs=66.0
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC--HHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEE
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD--VLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIV 249 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlV 249 (368)
+.++|++|+||||||+.+.... .. ..+.+..+.-.+ ....-+ .+..+.+......+.+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~-~~---~~i~i~g~~l~~~~~~~~~~--------------~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES-GL---NFISVKGPELLNMYVGESER--------------AVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT-TC---EEEEEETTTTCSSTTHHHHH--------------HHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHc-CC---CEEEEEcHHHHhhhhhHHHH--------------HHHHHHHHHHhcCCCeEe
Confidence 8999999999999999999863 21 123333222111 000000 011122222222678999
Q ss_pred EEcCccCCh-----------hhHHHhhhhcCCC--CCCcEEEEEeCChHHHhh--c---CCCCceeCCCCChhHHHHHHH
Q 044878 250 LDDVWDKKY-----------ELWQALKSPFMAG--APGSRIIVTTRSMVVALT--M---GSGKNYELKLLSDDDCWSVFV 311 (368)
Q Consensus 250 lDdvw~~~~-----------~~~~~l~~~l~~~--~~gs~IivTtR~~~va~~--~---~~~~~~~l~~L~~~~~~~lf~ 311 (368)
+|++..... .....+...+..+ ....-++.+|...++... . .-...+.+...+.++-.++|.
T Consensus 109 ~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 109 FDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp EETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred eehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 999854210 1112222233222 223456667766654211 1 223467788888888888887
Q ss_pred Hhh
Q 044878 312 NHA 314 (368)
Q Consensus 312 ~~~ 314 (368)
...
T Consensus 189 ~~~ 191 (274)
T 2x8a_A 189 TIT 191 (274)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 93
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.01 E-value=0.0023 Score=58.96 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 242 (368)
.-.++.|.|++|+||||||.++.... ...-..++|++....++.. .+++++.... ...+.+++...+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 44799999999999999999998763 2222356788877666643 3444443211 12344444443332
Q ss_pred ----cCeeEEEEEcCcc
Q 044878 243 ----AKKFLIVLDDVWD 255 (368)
Q Consensus 243 ----~kr~LlVlDdvw~ 255 (368)
.+.-++|+|.+-.
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 2556899999844
No 94
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.91 E-value=0.00089 Score=57.49 Aligned_cols=107 Identities=12% Similarity=-0.092 Sum_probs=61.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC--CCCChHHHHHHHHhc---
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC--GLTDLNSVQLKLKEA--- 243 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~--~~~~~~~l~~~l~~~--- 243 (368)
-.++.|+|+.|+||||++..+..+. ..+-..++.+...... . -...++++++.... .......+...+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~-~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRL-EYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 4688899999999999998887763 2222233344322211 1 11233344433211 123345566666553
Q ss_pred -CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeC
Q 044878 244 -KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTR 282 (368)
Q Consensus 244 -kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR 282 (368)
+.-+||+|.+...+.+..+.+.. +.+ .|-.||+|-+
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECC
T ss_pred CCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEec
Confidence 33499999997655444444433 322 3778999988
No 95
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.89 E-value=0.0044 Score=53.47 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=51.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHHHHHHHHhccCC---------CCCCChH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILESITLSS---------CGLTDLN 234 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~---------~~~~~~~ 234 (368)
-.++.|+|++|+|||||+..+.... ... .-..++|+.....+....+. .++..++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 4689999999999999999998753 221 12467888776655544432 3334443221 0111222
Q ss_pred H-------HHHHHHhcCeeEEEEEcCcc
Q 044878 235 S-------VQLKLKEAKKFLIVLDDVWD 255 (368)
Q Consensus 235 ~-------l~~~l~~~kr~LlVlDdvw~ 255 (368)
. +...+...+.-+||||.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 22333333778999999854
No 96
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.81 E-value=0.0043 Score=55.59 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=26.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhcccccc-CeEEEEe
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFE-PKAWVCV 206 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~-~~~wv~v 206 (368)
-.+++|+|++|+|||||++.+.... ...-. .+.|+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH-HHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHHcCCeEEEEeC
Confidence 3589999999999999999988763 21112 4556553
No 97
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.80 E-value=0.0095 Score=54.64 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHHHHHHHHhccCC-----------C-C
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILESITLSS-----------C-G 229 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~-----------~-~ 229 (368)
..-.++.|.|++|+||||||.++.... ... .-..++|++....++...+.. ++..++... + .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 345789999999999999999988763 211 224678998888777766543 344443221 1 1
Q ss_pred CCChHHH----HHHHHh--cCeeEEEEEcCc
Q 044878 230 LTDLNSV----QLKLKE--AKKFLIVLDDVW 254 (368)
Q Consensus 230 ~~~~~~l----~~~l~~--~kr~LlVlDdvw 254 (368)
......+ ...+.+ .+.-+||+|.+-
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 1222122 233443 356699999984
No 98
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.79 E-value=0.0011 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+..-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998875
No 99
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.78 E-value=0.0042 Score=56.57 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=53.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-cccc----ccCeEEEEecCCCCHHHHHHHHHHHhccCC---------CCCCCh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTEA----FEPKAWVCVSDDFDVLRISKAILESITLSS---------CGLTDL 233 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----F~~~~wv~vs~~~~~~~l~~~il~~l~~~~---------~~~~~~ 233 (368)
.-.++.|.|++|+||||||.++.... .... -..++|++....++..++.. ++..++... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 34689999999999999999988763 2211 23678998888777666543 344443321 011122
Q ss_pred H-------HHHHHHHh-cCeeEEEEEcCc
Q 044878 234 N-------SVQLKLKE-AKKFLIVLDDVW 254 (368)
Q Consensus 234 ~-------~l~~~l~~-~kr~LlVlDdvw 254 (368)
+ .+...+.+ .+.-+||+|.+-
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 22333333 366799999984
No 100
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.77 E-value=0.093 Score=49.93 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=32.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
.-.++.|.|.+|+||||||..+........-..++|++... +...+...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHH
Confidence 34689999999999999999998874111223567776443 334444443
No 101
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.77 E-value=0.0037 Score=57.49 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=51.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH-
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLK- 241 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~- 241 (368)
.-.++.|.|++|+||||||.++.... ...=..++|++....++.. ..+.++.... ...+.+++...+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~-~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA-QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 34689999999999999999998763 2222467888887766543 2344442211 1223444433333
Q ss_pred --hc-CeeEEEEEcCccC
Q 044878 242 --EA-KKFLIVLDDVWDK 256 (368)
Q Consensus 242 --~~-kr~LlVlDdvw~~ 256 (368)
.. +.-+||+|.+-..
T Consensus 134 l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHTTTCCSEEEEECGGGC
T ss_pred HHhcCCCCEEEEcChHhh
Confidence 22 5669999998543
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.74 E-value=0.0056 Score=54.97 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=44.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecC-CCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhc-C
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSD-DFDVLRISKAILESITLSSCGLTDLNSVQLKLKEA-K 244 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~-~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~-k 244 (368)
...+++++|++|+||||++..+.... .... ..+..+.... .....+.+....+..+.......+...+...+... +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcC
Confidence 45799999999999999999988763 2121 1334444322 22233333333333332211112233333333333 3
Q ss_pred eeEEEEEcC
Q 044878 245 KFLIVLDDV 253 (368)
Q Consensus 245 r~LlVlDdv 253 (368)
.=++++|-.
T Consensus 183 ~dlvIiDT~ 191 (296)
T 2px0_A 183 YDHVFVDTA 191 (296)
T ss_dssp SSEEEEECC
T ss_pred CCEEEEeCC
Confidence 447888844
No 103
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.72 E-value=0.062 Score=51.02 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=34.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.-.++.|.|.+|+||||||..+........=..++|++.. .+..++...++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE--~~~~~l~~R~~ 249 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE--MPAAQLTLRMM 249 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHHHHHH
Confidence 3468899999999999999999877421122356776654 34445555544
No 104
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.62 E-value=0.0052 Score=56.65 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=50.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH-
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLK- 241 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~- 241 (368)
.-+++.|.|++|+||||||.++.... ...-..++|++....++... +..++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~-~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 34689999999999999999988763 22223688998877666431 334433211 1123344433332
Q ss_pred ---hcCeeEEEEEcCcc
Q 044878 242 ---EAKKFLIVLDDVWD 255 (368)
Q Consensus 242 ---~~kr~LlVlDdvw~ 255 (368)
..+.-+||+|.+-.
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 22455999999854
No 105
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.62 E-value=0.0057 Score=56.59 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=51.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 242 (368)
.-.++.|.|++|+||||||.++.... ...-..++|++....++.. .+..++.... ...+.+++...+..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~-~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA-QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH-HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 34588899999999999999988763 2222478899888766643 2334433211 12344444444432
Q ss_pred ---c-CeeEEEEEcCcc
Q 044878 243 ---A-KKFLIVLDDVWD 255 (368)
Q Consensus 243 ---~-kr~LlVlDdvw~ 255 (368)
. ..-+||+|.+-.
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 2 455899999843
No 106
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.62 E-value=0.0036 Score=56.31 Aligned_cols=80 Identities=11% Similarity=0.100 Sum_probs=52.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhhcccc--ccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHH-H---HH
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEA--FEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSV-Q---LK 239 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~--F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l-~---~~ 239 (368)
++-|.|++|+|||||+.++.... ... =..++||+....++.. .+++++.+.. ...+.+++ . ..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 68999999999999999887763 222 2357899887777653 2566655432 12344444 2 22
Q ss_pred H---HhcCeeEEEEEcCccC
Q 044878 240 L---KEAKKFLIVLDDVWDK 256 (368)
Q Consensus 240 l---~~~kr~LlVlDdvw~~ 256 (368)
+ ...+.-|||+|.+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 2226789999998543
No 107
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.61 E-value=0.0077 Score=54.66 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=53.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccc---------cc-----cCeEEEEecCCCCHHHHHHHHHHHhccCC-----
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTE---------AF-----EPKAWVCVSDDFDVLRISKAILESITLSS----- 227 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~---------~F-----~~~~wv~vs~~~~~~~l~~~il~~l~~~~----- 227 (368)
.-.++.|.|++|+||||||.++.... ... .. ..++|++....++..++.. ++..++.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 34789999999999999999988652 211 11 4678998888777776653 344443321
Q ss_pred ----CCCCChHH-------HHHHHHh-cCeeEEEEEcCc
Q 044878 228 ----CGLTDLNS-------VQLKLKE-AKKFLIVLDDVW 254 (368)
Q Consensus 228 ----~~~~~~~~-------l~~~l~~-~kr~LlVlDdvw 254 (368)
....+.+. +...+.+ .+.-+||+|.+-
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 01122222 2233333 245699999984
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.60 E-value=0.00035 Score=58.21 Aligned_cols=108 Identities=12% Similarity=-0.008 Sum_probs=50.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccC--CCCCCChHHHHHHHHhcCeeE
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLS--SCGLTDLNSVQLKLKEAKKFL 247 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~--~~~~~~~~~l~~~l~~~kr~L 247 (368)
.++.|+|+.|+||||++..+..+....... +..+..... ...-...+...++.. .....+...+...+.. +.-+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~-v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~-~~dv 79 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKK-VAVFKPKID--SRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEE-DTRG 79 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCE-EEEEEEC-------CCCEECC----CEECEEESSGGGGGGGCCT-TEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCe-EEEEeeccc--cccCcccEEecCCCceeeEEECCHHHHHHHhcC-CCCE
Confidence 478899999999999996665543111111 222221110 000000000001100 0011122222222211 4569
Q ss_pred EEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 248 IVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 248 lVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
|++|.+...+.+..+.+....+ .|..|++|.+..
T Consensus 80 viIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 80 VFIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDL 113 (184)
T ss_dssp EEECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESB
T ss_pred EEEECcccCCHHHHHHHHHHHH---CCCCEEEEeecc
Confidence 9999998765444444443332 277899988743
No 109
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.59 E-value=0.0014 Score=54.51 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999875
No 110
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.58 E-value=0.0026 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|.|++|+||||+|+.+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999875
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.53 E-value=0.0012 Score=53.69 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999876
No 112
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.52 E-value=0.0013 Score=54.03 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|+|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999886
No 113
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0013 Score=54.44 Aligned_cols=24 Identities=13% Similarity=0.373 Sum_probs=21.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-++++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999875
No 114
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.48 E-value=0.0016 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 115
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.46 E-value=0.0023 Score=58.03 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=31.7
Q ss_pred ecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 145 YGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 145 ~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|-......+...+...... ..+.+++|.|+.|+|||||++.+..-
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~--~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEP--KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCC--CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCC--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34344444455444443321 56789999999999999999998764
No 116
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.45 E-value=0.0032 Score=56.37 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....+|+|+|+.|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999988763
No 117
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.44 E-value=0.048 Score=51.54 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.+|.++|++|+||||++.++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888764
No 118
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.44 E-value=0.0049 Score=58.54 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=49.6
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC-HHHHHHHHHHHhccC-------CCCCCC---------h
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD-VLRISKAILESITLS-------SCGLTD---------L 233 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~il~~l~~~-------~~~~~~---------~ 233 (368)
.++|+|..|+|||||++.+.......+-+.++++-+++..+ ..++.+++...-... ...... .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ 232 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTG 232 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHH
Confidence 58899999999999999998874222334566777777653 344555454321000 000000 0
Q ss_pred HHHHHHHHh--cCeeEEEEEcC
Q 044878 234 NSVQLKLKE--AKKFLIVLDDV 253 (368)
Q Consensus 234 ~~l~~~l~~--~kr~LlVlDdv 253 (368)
-.+.+.+.. .++.||++||+
T Consensus 233 ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 233 LTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHhcCCcEEEEeccH
Confidence 123344444 28999999999
No 119
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.44 E-value=0.0019 Score=54.37 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|+|+.|+|||||++.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999876
No 120
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.0026 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|+|++|+||||+|+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 55688999999999999999999876
No 121
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.44 E-value=0.047 Score=49.78 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=33.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
-.++.|.|.+|+||||||..+.... ...=..++|++. ..+..++...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~-a~~g~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSA-LNDDRGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH-HHTTCEEEEEES--SSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEEeC--CCCHHHHHHHHHH
Confidence 3688899999999999999998774 112234556554 3455565555543
No 122
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.44 E-value=0.0032 Score=58.17 Aligned_cols=53 Identities=15% Similarity=0.006 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccC-eEEEEecCCC
Q 044878 153 RMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEP-KAWVCVSDDF 210 (368)
Q Consensus 153 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~-~~wv~vs~~~ 210 (368)
+.++.+..-. .-..++|+|+.|+|||||++.+.+...+++-+. ++++-+++..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCCh
Confidence 3455555432 235789999999999999999887632222232 3456677654
No 123
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.42 E-value=0.0016 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+.|.|+||+|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999999876
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.41 E-value=0.0017 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|+|+.|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 125
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.40 E-value=0.0026 Score=58.81 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=35.3
Q ss_pred eecccccHHHHHHHHhcC-------C--CCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 144 VYGRDEDKDRMLDMVLKN-------D--PSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 144 ~~Gr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
++|.+..++.+...+... . .........+.++|++|+|||++|+.+.+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 688888888888777210 0 000023456889999999999999999987
No 126
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.39 E-value=0.0014 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999876
No 127
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.35 E-value=0.0025 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999876
No 128
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.34 E-value=0.0023 Score=54.11 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998775
No 129
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.33 E-value=0.002 Score=54.20 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999864
No 130
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.31 E-value=0.0019 Score=53.00 Aligned_cols=24 Identities=17% Similarity=0.519 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.-.+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999997543
No 131
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.31 E-value=0.0022 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999876
No 132
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.29 E-value=0.0025 Score=52.85 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998863
No 133
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.29 E-value=0.0021 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999876
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.28 E-value=0.0022 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++|+|+.|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 135
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.26 E-value=0.0025 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3478999999999999999999875
No 136
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.23 E-value=0.0018 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999865
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.23 E-value=0.0022 Score=53.99 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|+.|+||||||+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 138
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.22 E-value=0.0027 Score=52.76 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999763
No 139
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.22 E-value=0.0032 Score=52.74 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+..+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45689999999999999999998764
No 140
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.22 E-value=0.002 Score=59.50 Aligned_cols=111 Identities=9% Similarity=0.073 Sum_probs=56.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCH--HHHHHHHHHHhccCCCCCCChHHHHHHHHhcCee
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDV--LRISKAILESITLSSCGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~ 246 (368)
-.+++|+|+.|+|||||.+.+.... .......+ +++.++... ... ..++.+... .....+............+=
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~-~~~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~-~~~~~~~~~~La~aL~~~Pd 198 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL-NNTKYHHI-LTIEDPIEFVHESK-KCLVNQREV-HRDTLGFSEALRSALREDPD 198 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH-HHHCCCEE-EEEESSCCSCCCCS-SSEEEEEEB-TTTBSCHHHHHHHHTTSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc-cCCCCcEE-EEccCcHHhhhhcc-ccceeeeee-ccccCCHHHHHHHHhhhCcC
Confidence 3589999999999999999987652 11111111 222221110 000 000000000 01122333333333333777
Q ss_pred EEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCChHHHh
Q 044878 247 LIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSMVVAL 288 (368)
Q Consensus 247 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~~va~ 288 (368)
+|++|.+- +.+.++.+.... ..|.-||+||...+.+.
T Consensus 199 villDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 199 IILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp EEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred EEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 88999995 345555544432 24667999998876553
No 141
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.20 E-value=0.0028 Score=55.41 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999875
No 142
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.20 E-value=0.0026 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999876
No 143
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.19 E-value=0.0028 Score=53.31 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+++|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999875
No 144
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.15 E-value=0.0035 Score=52.88 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|+|+|+.|+||||||+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999764
No 145
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.15 E-value=0.0036 Score=52.58 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999876
No 146
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0032 Score=52.25 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998875
No 147
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.13 E-value=0.0028 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|.|++|+||||+++.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.12 E-value=0.0023 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999764
No 149
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.12 E-value=0.0031 Score=55.24 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++.|.|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999876
No 150
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.11 E-value=0.0026 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++|.|+|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457889999999999999999876
No 151
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.10 E-value=0.0035 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.|.|+.|+||||+|+.+.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 152
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.10 E-value=0.0026 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468899999999999999999876
No 153
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.10 E-value=0.003 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|+|+|+.|+||||+++.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 154
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.09 E-value=0.019 Score=54.54 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=60.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHHhccC-----
Q 044878 153 RMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILESITLS----- 226 (368)
Q Consensus 153 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~l~~~----- 226 (368)
+.++.|..-. +-.-++|.|..|+|||+|++.+.+...+.+-+.++++-+++.. ...++.+++.+.-...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~ 216 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDAT 216 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSC
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCC
Confidence 3556665421 2245899999999999999999887333445667788888765 3456667776542221
Q ss_pred -C-------CCCCCh---------HHHHHHHHh-c-CeeEEEEEcC
Q 044878 227 -S-------CGLTDL---------NSVQLKLKE-A-KKFLIVLDDV 253 (368)
Q Consensus 227 -~-------~~~~~~---------~~l~~~l~~-~-kr~LlVlDdv 253 (368)
. .+.... -.+.+.++. . +.+||++||+
T Consensus 217 ~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 217 SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 011111 123344554 3 9999999998
No 155
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.08 E-value=0.0033 Score=52.82 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=19.6
Q ss_pred EEEEEecCCcchHHHHHHHHh
Q 044878 171 VIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (368)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 156
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.08 E-value=0.0047 Score=51.11 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....+|.|.|++|+||||+++.+....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999998864
No 157
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.07 E-value=0.029 Score=50.71 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=35.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILES 222 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~ 222 (368)
.-.++.|.|.+|+||||||..+........ ..++|++.. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 346889999999999999999987642222 456777654 3455555555543
No 158
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.06 E-value=0.022 Score=53.26 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=50.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCHHHHHHHHHHHhccCCC---------CCCChH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDVLRISKAILESITLSSC---------GLTDLN 234 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~---------~~~~~~ 234 (368)
-.++.|+|++|+|||||+..+.-.. ... .-..++|++....++...+ +.+.+.++.... ...+..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 4689999999999999999776432 211 2235788887766655543 334554443210 111221
Q ss_pred ---H----HHHHHHhcCeeEEEEEcCcc
Q 044878 235 ---S----VQLKLKEAKKFLIVLDDVWD 255 (368)
Q Consensus 235 ---~----l~~~l~~~kr~LlVlDdvw~ 255 (368)
. +...+...+.-+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 1 12223333678999999843
No 159
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.06 E-value=0.0058 Score=52.12 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.....|.|+|.+|+|||||+..+....
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999988763
No 160
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.03 E-value=0.0035 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999886
No 161
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.02 E-value=0.0041 Score=51.53 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.02 E-value=0.0043 Score=52.99 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.++|.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56799999999999999999999887
No 163
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.02 E-value=0.0034 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+++|+|+.|+|||||++.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999965
No 164
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.02 E-value=0.0034 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|+.|+|||||++.+..-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998764
No 165
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.01 E-value=0.004 Score=56.39 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45689999999999999999999875
No 166
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.00 E-value=0.0038 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999965
No 167
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.00 E-value=0.0029 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|.|++|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 168
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.98 E-value=0.053 Score=50.16 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=81.3
Q ss_pred CCceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHH-
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKA- 218 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~- 218 (368)
...++|......++...+..-.. .. ..+.|.|.+|+||+++|+.++... -.. . ++.+.-..-...++..
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~---~~-~~vli~GesGtGKe~lAr~ih~~s~r~~---~--fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAK---SK-APVLITGESGTGKEIVARLIHRYSGRKG---A--FVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHT---SC-SCEEEECCTTSSHHHHHHHHHHHHCCCS---C--EEEEESSSSCTTTHHHH
T ss_pred cccccccchHHHHHHhhhhhhhc---cc-hhheEEeCCCchHHHHHHHHHHhccccC---C--cEEEEcccCChHHHHHH
Confidence 34678887777776665543221 12 236689999999999999998763 221 1 4443332211122222
Q ss_pred HHHHhccCCCCC-CChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC------C-----CCcEEEEEeCChHH
Q 044878 219 ILESITLSSCGL-TDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG------A-----PGSRIIVTTRSMVV 286 (368)
Q Consensus 219 il~~l~~~~~~~-~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~IivTtR~~~v 286 (368)
++-.-.+.-.+. ...... +.....-.|+||++.+.+......+...+..+ + ...|||.+|...-.
T Consensus 199 lfg~~~g~~tga~~~~~g~---~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~ 275 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGK---LELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE 275 (368)
T ss_dssp HHEECSCSSSSCCCCEECH---HHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH
T ss_pred hcCccccccCCcccccCCh---HhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH
Confidence 111111111111 111111 11123446999999888777777777666422 1 12467777664321
Q ss_pred Hh-hcCC----------CCceeCCCCCh--hHHHHHH
Q 044878 287 AL-TMGS----------GKNYELKLLSD--DDCWSVF 310 (368)
Q Consensus 287 a~-~~~~----------~~~~~l~~L~~--~~~~~lf 310 (368)
.. .-+. ...+++.||.+ +|-..|+
T Consensus 276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~ 312 (368)
T 3dzd_A 276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLA 312 (368)
T ss_dssp HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHH
T ss_pred HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHH
Confidence 11 1111 12467899976 5655443
No 169
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.97 E-value=0.0045 Score=53.85 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|+|.|+.|+|||||++.+...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998775
No 170
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.96 E-value=0.0041 Score=52.21 Aligned_cols=25 Identities=12% Similarity=0.449 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++++|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4578999999999999999999875
No 171
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.96 E-value=0.013 Score=56.07 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=21.2
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+.|.|++|+||||++..+....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998875
No 172
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.95 E-value=0.0046 Score=52.08 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998874
No 173
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.95 E-value=0.0069 Score=55.45 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=30.2
Q ss_pred ccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 147 RDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.-.+++++.+...-.. .....|.|+|++|+||||+++.+...
T Consensus 4 ~~~L~~~il~~l~~~i~~--g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIED--NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHHTTTT--CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc--CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344455566655432111 34567899999999999999988875
No 174
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.94 E-value=0.0045 Score=51.10 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|+.|+||||+++.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999875
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.94 E-value=0.0042 Score=51.80 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|+.|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 176
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.94 E-value=0.06 Score=50.12 Aligned_cols=131 Identities=16% Similarity=0.117 Sum_probs=69.7
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHH-HHH
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKA-ILE 221 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~-il~ 221 (368)
.++|....+.++.+.+..-.. .... +.|.|..|+|||++|+.++... ...-...+-+.++. -...++.. ++-
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~s-~r~~~~fv~v~~~~--~~~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLS-DRSKEPFVALNVAS--IPRDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHS-TTTTSCEEEEETTT--SCHHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHhc-CCCCCCeEEEecCC--CCHHHHHHHhcC
Confidence 577887778887776655332 2333 4899999999999999998763 11111223333332 12222222 211
Q ss_pred HhccCCCCC-CChHHHHHHHHhcCeeEEEEEcCccCChhhHHHhhhhcCCC------C-----CCcEEEEEeCC
Q 044878 222 SITLSSCGL-TDLNSVQLKLKEAKKFLIVLDDVWDKKYELWQALKSPFMAG------A-----PGSRIIVTTRS 283 (368)
Q Consensus 222 ~l~~~~~~~-~~~~~l~~~l~~~kr~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~IivTtR~ 283 (368)
.-.+.-.+. .... ..+.....=.|+||++...+......+...+..+ + ...+||.||..
T Consensus 211 ~~~g~~tga~~~~~---g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~ 281 (387)
T 1ny5_A 211 YEKGAFTGAVSSKE---GFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNR 281 (387)
T ss_dssp BCTTSSTTCCSCBC---CHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESS
T ss_pred CCCCCCCCcccccC---CceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCC
Confidence 111110111 1111 1122224457889999887766666666655321 1 23478887764
No 177
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.93 E-value=0.004 Score=50.58 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=21.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999999876
No 178
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.92 E-value=0.005 Score=50.98 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999876
No 179
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.92 E-value=0.0046 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|+|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999875
No 180
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.90 E-value=0.0049 Score=51.73 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|.|++|+||||+|+.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999876
No 181
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.89 E-value=0.0059 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....++.|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45688999999999999999998876
No 182
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.87 E-value=0.0046 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999999876
No 183
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.87 E-value=0.0033 Score=51.70 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=17.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 184
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.86 E-value=0.005 Score=54.11 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 185
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.0033 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|+|||||++.+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 357999999999999999999875
No 186
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.86 E-value=0.0033 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|.|++|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.86 E-value=0.0063 Score=52.91 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.....|.|.|++|+||||+|+.+.+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999876
No 188
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.83 E-value=0.0055 Score=51.79 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..+|.|.|+.|+||||+++.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998863
No 189
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.83 E-value=0.005 Score=55.75 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
++.+||+|.|-|||||||.+-.+.--.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL 72 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF 72 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH
Confidence 567999999999999999998887653
No 190
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.81 E-value=0.011 Score=53.39 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999998874
No 191
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.80 E-value=0.0039 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999876
No 192
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.79 E-value=0.0049 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++|+|++|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998754
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.78 E-value=0.0056 Score=51.62 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...+|.|.|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998863
No 194
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.77 E-value=0.0051 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|+|+|+.|+|||||++.+...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999865
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.77 E-value=0.0092 Score=54.32 Aligned_cols=26 Identities=31% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+||||+++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998865
No 196
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.76 E-value=0.0065 Score=50.80 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|+|+|+.|+||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999999999999998875
No 197
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.75 E-value=0.0053 Score=52.54 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999999875
No 198
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.74 E-value=0.062 Score=51.22 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=40.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKAILES 222 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~il~~ 222 (368)
.-++|.|..|+|||+|++.+.+...+.+-+.++++-+++.. ...++.+++.+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 34899999999999999999887434456788898888876 455666776654
No 199
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.73 E-value=0.0034 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998763
No 200
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.73 E-value=0.006 Score=52.09 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=30.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccc----cccCeEEEEecCCCCH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTE----AFEPKAWVCVSDDFDV 212 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~F~~~~wv~vs~~~~~ 212 (368)
.-.+++|+|+.|+|||||++.+.... ... .-...+|+.-...+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 34799999999999999999998642 111 1234677765544433
No 201
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.71 E-value=0.0057 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 202
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.69 E-value=0.006 Score=51.99 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999876
No 203
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.68 E-value=0.0061 Score=52.25 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|.|+.|+||||+|+.+.+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999876
No 204
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.68 E-value=0.006 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=20.3
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 205
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.67 E-value=0.0053 Score=53.60 Aligned_cols=149 Identities=13% Similarity=0.095 Sum_probs=72.9
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEE
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLD 251 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlD 251 (368)
+.|+|++|+|||||++.+... ... ..+.+... .+. ...... .......+.+........++++|
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~-~~~---~~i~~~~~------~~~----~~~~~~--~~~~i~~~~~~~~~~~~~i~~~D 115 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE-ARV---PFITASGS------DFV----EMFVGV--GAARVRDLFETAKRHAPCIVFID 115 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-TTC---CEEEEEHH------HHH----HSCTTH--HHHHHHHHHHHHTTSSSEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH-hCC---CEEEeeHH------HHH----HHHhhH--HHHHHHHHHHHHHhcCCeEEEeh
Confidence 889999999999999999986 321 12222211 111 000000 00001112222222245799999
Q ss_pred cCccC----------Chhh----HHHhhhhcCCCC--CCcEEEEEeCChHHHhh--c---CCCCceeCCCCChhHHHHHH
Q 044878 252 DVWDK----------KYEL----WQALKSPFMAGA--PGSRIIVTTRSMVVALT--M---GSGKNYELKLLSDDDCWSVF 310 (368)
Q Consensus 252 dvw~~----------~~~~----~~~l~~~l~~~~--~gs~IivTtR~~~va~~--~---~~~~~~~l~~L~~~~~~~lf 310 (368)
++... .... ...+...+..+. ...-++.||...+.... . .-...+.+.+.+.++-.+++
T Consensus 116 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il 195 (254)
T 1ixz_A 116 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 195 (254)
T ss_dssp THHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHH
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHH
Confidence 99321 0011 122333332222 22345556665544211 1 12246788888888888888
Q ss_pred HHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 311 VNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
...+-+. .......+ ..|++.+.|.-
T Consensus 196 ~~~~~~~-~~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 196 RIHARGK-PLAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp HHHHTTS-CBCTTCCH----HHHHHTCTTCC
T ss_pred HHHHcCC-CCCcccCH----HHHHHHcCCCC
Confidence 7665221 11111123 34777888864
No 206
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.66 E-value=0.0057 Score=53.11 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.. .+++|+|+.|+|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 35 7899999999999999999974
No 207
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.63 E-value=0.0057 Score=52.49 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 208
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.62 E-value=0.0054 Score=53.09 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999864
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.62 E-value=0.0059 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999998874
No 210
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.62 E-value=0.0075 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999873
No 211
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.62 E-value=0.0042 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998875
No 212
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.62 E-value=0.006 Score=52.06 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999876
No 213
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.58 E-value=0.0069 Score=50.36 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.4
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 214
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.58 E-value=0.0073 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998764
No 215
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.58 E-value=0.035 Score=49.73 Aligned_cols=25 Identities=32% Similarity=0.227 Sum_probs=22.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..+++++|++|+||||++..+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999988653
No 216
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.58 E-value=0.0082 Score=51.00 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.57 E-value=0.0075 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 218
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.56 E-value=0.0058 Score=51.80 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=19.9
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 219
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.56 E-value=0.007 Score=51.32 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999776
No 220
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.55 E-value=0.0057 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.9
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+++|+|+.|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998764
No 221
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.54 E-value=0.03 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.++|++|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988765
No 222
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.54 E-value=0.0043 Score=53.39 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.0
Q ss_pred EEEEEEecCCcchHHHHHHHH-hh
Q 044878 170 RVIPLVGMGGIRKTALSQEVY-ND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~-~~ 192 (368)
.+++|+|+.|+|||||++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999999998 53
No 223
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.52 E-value=0.0086 Score=50.69 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|.|+.|+||||+++.+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999876
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.52 E-value=0.0088 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.|.|+.|+||||+++.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999875
No 225
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.47 E-value=0.0079 Score=51.01 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.8
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|.|++|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999876
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.44 E-value=0.012 Score=49.53 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 151 KDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+..+..++... ++...+.|+|++|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 44455555431 33346899999999999999998887
No 227
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.41 E-value=0.007 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999864
No 228
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.40 E-value=0.0072 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 229
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.39 E-value=0.0071 Score=53.24 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999874
No 230
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.38 E-value=0.072 Score=51.43 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=34.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.-.++.|.|.+|+||||||.++..+....+=..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHH
Confidence 34688899999999999999998774222223567776544 3445555443
No 231
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.38 E-value=0.0076 Score=53.40 Aligned_cols=149 Identities=13% Similarity=0.074 Sum_probs=74.0
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHHHHhcCeeEEEEE
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLKLKEAKKFLIVLD 251 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~l~~~kr~LlVlD 251 (368)
+.|+|++|+||||||+.+... ... ..+.+..+ .+. ...... ....+..+.+........++++|
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~-~~~---~~i~~~~~------~~~----~~~~~~--~~~~i~~~~~~~~~~~~~i~~iD 139 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE-ARV---PFITASGS------DFV----EMFVGV--GAARVRDLFETAKRHAPCIVFID 139 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH-TTC---CEEEEEHH------HHH----HSTTTH--HHHHHHHHHHHHHTSCSEEEEEE
T ss_pred EEEECCCcChHHHHHHHHHHH-cCC---CEEEecHH------HHH----HHHhhH--HHHHHHHHHHHHHhcCCcEEehh
Confidence 889999999999999999987 321 22233211 111 000000 00011122222222256899999
Q ss_pred cCccC----------ChhhH----HHhhhhcCCCCC--CcEEEEEeCChHHHh---h--cCCCCceeCCCCChhHHHHHH
Q 044878 252 DVWDK----------KYELW----QALKSPFMAGAP--GSRIIVTTRSMVVAL---T--MGSGKNYELKLLSDDDCWSVF 310 (368)
Q Consensus 252 dvw~~----------~~~~~----~~l~~~l~~~~~--gs~IivTtR~~~va~---~--~~~~~~~~l~~L~~~~~~~lf 310 (368)
++... ....+ ..+...+..+.. ..-++.||...++.. . ..-...+.+.+.+.++-.+++
T Consensus 140 eid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il 219 (278)
T 1iy2_A 140 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQIL 219 (278)
T ss_dssp THHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHH
T ss_pred hhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHH
Confidence 99421 00111 222222322222 234455666543311 1 123357888888888888888
Q ss_pred HHhhcCCCCCCCCccHHHHHHHHHHHcCCCh
Q 044878 311 VNHAFEGRDAGTHGNFESTRQRVVEKRKGLP 341 (368)
Q Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~I~~~c~GlP 341 (368)
...+-.. .......+ ..|+..+.|..
T Consensus 220 ~~~~~~~-~~~~~~~~----~~la~~~~G~~ 245 (278)
T 1iy2_A 220 RIHARGK-PLAEDVDL----ALLAKRTPGFV 245 (278)
T ss_dssp HHHHTTS-CBCTTCCH----HHHHHTCTTCC
T ss_pred HHHHccC-CCCcccCH----HHHHHHcCCCC
Confidence 7665221 11111122 34777888865
No 232
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.36 E-value=0.0088 Score=51.60 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.|.|++|+||||+|+.+...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 233
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.34 E-value=0.0093 Score=49.00 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++.|+|+.|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999876
No 234
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.33 E-value=0.065 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++.++|++|+||||++..+...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999998765
No 235
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.33 E-value=0.0087 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.6
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 236
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.33 E-value=0.0078 Score=52.23 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999974
No 237
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.32 E-value=0.016 Score=53.31 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 151 KDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+...+.... .+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 444555554322 46789999999999999999998755
No 238
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.014 Score=48.23 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998875
No 239
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.31 E-value=0.0079 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999864
No 240
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.31 E-value=0.0079 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999974
No 241
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.29 E-value=0.0088 Score=51.99 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=20.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999864
No 242
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.29 E-value=0.0097 Score=49.92 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|+|.|+.|+||||+++.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999875
No 243
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.28 E-value=0.011 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+...
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35689999999999999999998764
No 244
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.27 E-value=0.0083 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
-.+++|+|+.|+|||||++.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999874
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.27 E-value=0.027 Score=46.99 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=58.6
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC---CCCHHHHHHHHHHHhccC----CCCC--CC----hHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD---DFDVLRISKAILESITLS----SCGL--TD----LNSV 236 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~---~~~~~~l~~~il~~l~~~----~~~~--~~----~~~l 236 (368)
..|.|++..|.||||+|--..-...... -.+.++.+.+ ......++..+. +... .... .+ ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G-~rV~~vQF~Kg~~~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG-KNVGVVQFIKGTWPNGERNLLEPHG--VEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT-CCEEEEESSCCSSCCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeCCCCCccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHHH
Confidence 4567777778999999988776632222 2344444332 234444444431 1000 0000 00 1111
Q ss_pred HHHHH---hc---Cee-EEEEEcCcc---CChhhHHHhhhhcCCCCCCcEEEEEeCChH
Q 044878 237 QLKLK---EA---KKF-LIVLDDVWD---KKYELWQALKSPFMAGAPGSRIIVTTRSMV 285 (368)
Q Consensus 237 ~~~l~---~~---kr~-LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~IivTtR~~~ 285 (368)
...+. +. .+| |||||++-. ...-..+.+...+........||+|+|...
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 11111 11 334 899999822 122344566666655556779999999853
No 246
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.26 E-value=0.0094 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||++.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 247
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.26 E-value=0.076 Score=50.17 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..+++|.++|.+|+||||++.++....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999988653
No 248
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.25 E-value=0.0086 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 249
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.24 E-value=0.0078 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999875
No 250
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.24 E-value=0.011 Score=53.97 Aligned_cols=23 Identities=39% Similarity=0.348 Sum_probs=21.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|+|.|+.|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999876
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.24 E-value=0.011 Score=53.22 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....++.|+|++|+||||++..+....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 456899999999999999999998763
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.24 E-value=0.0072 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998753
No 253
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.23 E-value=0.0087 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 254
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.22 E-value=0.011 Score=55.84 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=35.7
Q ss_pred CceecccccHHHHHHHHhcC--------CCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKN--------DPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++|.++.++.+...+... ........+-+.++|++|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45788888888877666321 0000012355889999999999999999887
No 255
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.22 E-value=0.005 Score=56.88 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccC-eEEEEecCCC
Q 044878 152 DRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEP-KAWVCVSDDF 210 (368)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~-~~wv~vs~~~ 210 (368)
-+.++.|..-. .-.-++|+|.+|+|||+|++.+.+.....+-+. ++++-+++..
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCH
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCc
Confidence 35667766532 224578999999999999999988731222232 2456666543
No 256
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.20 E-value=0.009 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 257
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=95.18 E-value=0.029 Score=52.91 Aligned_cols=81 Identities=10% Similarity=0.188 Sum_probs=49.9
Q ss_pred EEEEecCCcchHHHHHHHHhhhcccccc----CeEEEEecCCC-CHHHHHHHHHHHhccC-------CCCCCChH-----
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFE----PKAWVCVSDDF-DVLRISKAILESITLS-------SCGLTDLN----- 234 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~----~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~----- 234 (368)
++|.|..|+|||+|+.++.+.. ..+-+ .++++-+++.. ...++.+++.+.=... ..+.....
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 6889999999999999998873 32223 56677777654 4456666655431111 11111111
Q ss_pred ----HHHHHHHh--cCeeEEEEEcC
Q 044878 235 ----SVQLKLKE--AKKFLIVLDDV 253 (368)
Q Consensus 235 ----~l~~~l~~--~kr~LlVlDdv 253 (368)
.+.+.++. .+.+||++||+
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 23344553 38999999998
No 258
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.16 E-value=0.012 Score=51.81 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|+.|+|||||++.+..-
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 4478999999999999999998764
No 259
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.15 E-value=0.0094 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||++.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999974
No 260
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.14 E-value=0.0095 Score=52.36 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.14 E-value=0.013 Score=53.23 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..++|.|+|+.|+||||||..+.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.14 E-value=0.013 Score=52.65 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++|.|+|+.|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 368899999999999999999875
No 263
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.14 E-value=0.012 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999875
No 264
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.13 E-value=0.17 Score=48.72 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++|+|+|.+|+||||++.++...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999998854
No 265
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.13 E-value=0.0098 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999998753
No 266
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.13 E-value=0.0072 Score=54.09 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=19.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+..+|+|.|+.|+||||+|+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998775
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.10 E-value=0.012 Score=49.69 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+|.|.|++|+||+|.|+.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 268
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.09 E-value=0.013 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999876
No 269
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.09 E-value=0.013 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=20.0
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999876
No 270
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.09 E-value=0.012 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=20.1
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999876
No 271
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.08 E-value=0.01 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999874
No 272
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.06 E-value=0.01 Score=51.91 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.05 E-value=0.01 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999975
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.05 E-value=0.019 Score=49.50 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=28.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD 208 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~ 208 (368)
-.++.|.|++|+||||||.++..... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccC
Confidence 35899999999999999988876532 2223567776544
No 275
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.05 E-value=0.013 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..+|.|+|+.|+||||||+.+...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999876
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.04 E-value=0.032 Score=51.18 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=33.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh-ccccc----cCeEEEEecCCCCHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAF----EPKAWVCVSDDFDVLR 214 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F----~~~~wv~vs~~~~~~~ 214 (368)
..-.++.|+|+.|+|||||+..+.... ..... ..++|++....+....
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 345799999999999999999998762 12112 2348888766554333
No 277
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.04 E-value=0.014 Score=50.27 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|.|+.|+||||+|+.+.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999876
No 278
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.02 E-value=0.044 Score=53.81 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=53.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCCCCCChHHHHHH----HH----
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSCGLTDLNSVQLK----LK---- 241 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~----l~---- 241 (368)
+++.|.|++|+||||++..+....... ...+.+.......... +.+.++.. ...+..+... ..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT~~Aa~~----L~e~~~~~---a~Tih~ll~~~~~~~~~~~~ 275 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPTGKAARR----LGEVTGRT---ASTVHRLLGYGPQGFRHNHL 275 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHH----HHHHHTSC---EEEHHHHTTEETTEESCSSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCcHHHHHH----hHhhhccc---HHHHHHHHcCCcchhhhhhc
Confidence 578899999999999999988763211 2344444433222222 22222211 0111111100 00
Q ss_pred hc-CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEE
Q 044878 242 EA-KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVT 280 (368)
Q Consensus 242 ~~-kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivT 280 (368)
.. +-=+||+|++...+...+..+...++ .|.++|+.
T Consensus 276 ~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilv 312 (574)
T 3e1s_A 276 EPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLV 312 (574)
T ss_dssp SCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEE
T ss_pred ccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEE
Confidence 00 23489999997766666777766665 45667665
No 279
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.01 E-value=0.04 Score=61.14 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=51.6
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHH
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLK 241 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~ 241 (368)
...+++.|+|++|+||||||.++.... ..+=..++|+++...++... ++.++.+-. .....++....+.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea-~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 345789999999999999999998763 23334577888877766544 334432211 1112223333222
Q ss_pred ----hcCeeEEEEEcCc
Q 044878 242 ----EAKKFLIVLDDVW 254 (368)
Q Consensus 242 ----~~kr~LlVlDdvw 254 (368)
..+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 2377799999994
No 280
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.99 E-value=0.017 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++|.|+|+.|+||||||..+...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh
Confidence 34578999999999999999999876
No 281
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.97 E-value=0.012 Score=52.82 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|+.|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3468999999999999999998753
No 282
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.96 E-value=0.015 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....++.+.|.||+|||||+..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35678899999999999999999854
No 283
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.96 E-value=0.014 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 284
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.95 E-value=0.042 Score=47.43 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=27.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEE
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVC 205 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~ 205 (368)
..+|.|.|+.|+||||+++.+........+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 4689999999999999999998875233455344443
No 285
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.94 E-value=0.014 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 286
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.92 E-value=0.016 Score=46.69 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 287
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.91 E-value=0.019 Score=56.83 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=34.6
Q ss_pred ceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 143 AVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 143 ~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++|.+..++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred eEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 5788888887777777542 36899999999999999999886
No 288
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.90 E-value=0.016 Score=55.47 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 34679999999999999999998765
No 289
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.87 E-value=0.034 Score=47.78 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...+|.|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999874
No 290
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.86 E-value=0.016 Score=52.52 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|++|+||||++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998765
No 291
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.86 E-value=0.014 Score=48.69 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 292
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.84 E-value=0.014 Score=54.96 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45689999999999999999999876
No 293
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.81 E-value=0.014 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.++.|+|++|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998864
No 294
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.79 E-value=0.014 Score=50.22 Aligned_cols=26 Identities=15% Similarity=0.008 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..-.+|+|.|+.|+|||||++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44579999999999999999988764
No 295
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.79 E-value=0.048 Score=52.07 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=47.7
Q ss_pred EEEEEecCCcchHHHH-HHHHhhhcccccc-CeEEEEecCCC-CHHHHHHHHHHHhccC-------CCCCCChHH-----
Q 044878 171 VIPLVGMGGIRKTALS-QEVYNDKLTEAFE-PKAWVCVSDDF-DVLRISKAILESITLS-------SCGLTDLNS----- 235 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa-~~v~~~~~~~~F~-~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~~~----- 235 (368)
-++|.|..|+|||+|| ..+.+. . .-+ .++++-+++.. .+.++.+++...=... ..+......
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~-~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 253 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQ-K--GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPY 253 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTT-T--TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHh-h--cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4789999999999995 577775 2 344 34677777765 3456666665431111 111111111
Q ss_pred ----HHHHHHhc-CeeEEEEEcC
Q 044878 236 ----VQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 236 ----l~~~l~~~-kr~LlVlDdv 253 (368)
+.+.++.. +..||++||+
T Consensus 254 ~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 254 AGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHcCCcEEEEeccH
Confidence 12223333 9999999998
No 296
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.79 E-value=0.012 Score=48.33 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998763
No 297
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.77 E-value=0.014 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.76 E-value=0.019 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999998765
No 299
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.76 E-value=0.017 Score=45.96 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.2
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998654
No 300
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.76 E-value=0.046 Score=52.15 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=47.7
Q ss_pred EEEEEecCCcchHHHH-HHHHhhhcccccc-CeEEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCChHH-----
Q 044878 171 VIPLVGMGGIRKTALS-QEVYNDKLTEAFE-PKAWVCVSDDF-DVLRISKAILESITLSS-------CGLTDLNS----- 235 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa-~~v~~~~~~~~F~-~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~~----- 235 (368)
-++|.|..|+|||+|| ..+.+. . +-+ .++++-+++.. ...++.+++...-.... .+......
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~-~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQ-K--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGG-G--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHh-h--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4789999999999995 577776 2 244 34677777765 34555666654321111 11111111
Q ss_pred ----HHHHHHhc-CeeEEEEEcC
Q 044878 236 ----VQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 236 ----l~~~l~~~-kr~LlVlDdv 253 (368)
+.+.++.. +..||++||+
T Consensus 241 ~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 241 AGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHcCCcEEEEEecH
Confidence 22223333 9999999998
No 301
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.75 E-value=0.016 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999974
No 302
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.74 E-value=0.052 Score=46.05 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=32.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILE 221 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~ 221 (368)
..|.+-|+.|+||||+++.+.+......+..+....-.......+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 4788999999999999999998752233433333332222233444455544
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.71 E-value=0.019 Score=49.53 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|+|+|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999875
No 304
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.68 E-value=0.018 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999854
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.66 E-value=0.012 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999999864
No 306
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.63 E-value=0.016 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999764
No 307
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.61 E-value=0.019 Score=53.30 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|+.|+|||||++.+...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34568999999999999999999875
No 308
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.60 E-value=0.022 Score=46.64 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|+|+|.+|+|||||.+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 309
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.59 E-value=0.14 Score=48.49 Aligned_cols=49 Identities=8% Similarity=-0.021 Sum_probs=32.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.-.++.|.|.+|+||||||.++..+. .. =..++|++... +..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHH
Confidence 34688899999999999999998875 32 12456655433 3334444444
No 310
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.57 E-value=0.021 Score=46.84 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.+|+|+.|+|||||+..++--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998753
No 311
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.56 E-value=0.018 Score=45.98 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=21.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4457899999999999999998753
No 312
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.55 E-value=0.021 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...++|+|+|-||+||||+|..+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH
Confidence 467899999999999999999988764
No 313
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.54 E-value=0.025 Score=48.85 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999886
No 314
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.53 E-value=0.021 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.158 Sum_probs=22.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..+++|+|.+|+||||++..+....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998763
No 315
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.52 E-value=0.022 Score=47.61 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999875
No 316
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.51 E-value=0.25 Score=46.55 Aligned_cols=100 Identities=14% Similarity=0.014 Sum_probs=55.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccC---CCCCCChHHHHHHHHhc
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLS---SCGLTDLNSVQLKLKEA 243 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~---~~~~~~~~~l~~~l~~~ 243 (368)
...++..|.|.+|.||||+.+...+. ....-++ ... ....++.+.+... .............|...
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~------~~~lVlT-pT~----~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~ 227 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF------EEDLILV-PGR----QAAEMIRRRANASGIIVATKDNVRTVDSFLMNY 227 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT------TTCEEEE-SCH----HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc------CCeEEEe-CCH----HHHHHHHHHhhhcCccccccceEEEeHHhhcCC
Confidence 57889999999999999999887652 1112222 221 2234444444321 11122333333444443
Q ss_pred C------eeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEe
Q 044878 244 K------KFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTT 281 (368)
Q Consensus 244 k------r~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTt 281 (368)
. -=+||+|++.-.+...+..+....+ ..++|+.-
T Consensus 228 ~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvG 267 (446)
T 3vkw_A 228 GKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYG 267 (446)
T ss_dssp TSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEE
T ss_pred CCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEec
Confidence 2 2489999997655555655544332 24666653
No 317
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.50 E-value=0.066 Score=45.74 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....+|.|.|+.|+||||+++.+.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999874
No 318
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.49 E-value=0.019 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 5899999999999999999874
No 319
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.47 E-value=0.019 Score=53.91 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999986
No 320
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.47 E-value=0.019 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999974
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.42 E-value=0.031 Score=45.16 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+...|.|+|.+|+|||||...+....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345678899999999999999997753
No 322
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.37 E-value=0.021 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999999974
No 323
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.35 E-value=0.021 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999999974
No 324
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.34 E-value=0.022 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998654
No 325
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.33 E-value=0.023 Score=45.32 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..-|.|+|.+|+|||||...+....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3457899999999999999998654
No 326
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.32 E-value=0.047 Score=47.89 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 152 DRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-+..+|.... ++...+.++|++|+|||+||..+.+.
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 33556665431 22356899999999999999999886
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.31 E-value=0.022 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999999974
No 328
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.31 E-value=0.024 Score=46.10 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.4
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999865
No 329
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.28 E-value=0.055 Score=46.51 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=31.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAI 219 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 219 (368)
-.++.|.|.+|+|||+||.++..+.....-..+++++... +...+.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHHH
Confidence 3588899999999999998876542222233555665443 445555444
No 330
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.27 E-value=0.046 Score=49.91 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+++|+|++|+|||||.+.+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999999743
No 331
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.27 E-value=0.09 Score=58.43 Aligned_cols=83 Identities=14% Similarity=0.071 Sum_probs=55.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 242 (368)
.-.++.|.|++|+||||||.++.... ...-..++|++....++... ++.++.+.. ...+.+++...+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~-a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 44689999999999999999998874 22224678888777666431 445544321 22455665555542
Q ss_pred ----cCeeEEEEEcCccC
Q 044878 243 ----AKKFLIVLDDVWDK 256 (368)
Q Consensus 243 ----~kr~LlVlDdvw~~ 256 (368)
.+.-+||+|.+...
T Consensus 456 lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCcEEEECCHHHh
Confidence 25669999998543
No 332
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.27 E-value=0.023 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999974
No 333
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.26 E-value=0.013 Score=48.92 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=54.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCC--CCCCChHHHHHHHHhcCee
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSS--CGLTDLNSVQLKLKEAKKF 246 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~--~~~~~~~~l~~~l~~~kr~ 246 (368)
-.+..++|+.|.||||.+..+.++.....+...+ +.... +...-...+.+.++... ....+..++...+. .+|
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v-~k~~~--d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~--~~~ 82 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQV-FKPEI--DNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE--EDT 82 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE-EEEC---------CEEECTTSCEEECEEESSSTHHHHHCC--TTC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE-EEecc--CccchHHHHHhhcCCceeeEeeCCHHHHHHHHh--ccC
Confidence 4689999999999999887776663222222222 22111 00000011222222110 01112223333222 234
Q ss_pred -EEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 247 -LIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 247 -LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
+|++|.+...+.+..+.+....+ .|..||+|.++.
T Consensus 83 dvViIDEaqfl~~~~v~~l~~l~~---~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 83 EVIAIDEVQFFDDEIVEIVNKIAE---SGRRVICAGLDM 118 (191)
T ss_dssp SEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEEECSB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEeccc
Confidence 89999987655455555544332 367899998854
No 334
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.24 E-value=0.019 Score=52.59 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999999975
No 335
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.24 E-value=0.028 Score=46.29 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.....|.|+|.+|+|||||...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999765
No 336
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.24 E-value=0.03 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|.|+.|+||||||..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58899999999999999999865
No 337
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.23 E-value=0.023 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999999974
No 338
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.23 E-value=0.063 Score=50.67 Aligned_cols=83 Identities=10% Similarity=0.173 Sum_probs=49.8
Q ss_pred EEEEEecCCcchHHHHHHHHhhh-cc--------cccc-CeEEEEecCCC-CHHHHHHHHHHHhcc-------CCCCCCC
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK-LT--------EAFE-PKAWVCVSDDF-DVLRISKAILESITL-------SSCGLTD 232 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~-~~--------~~F~-~~~wv~vs~~~-~~~~l~~~il~~l~~-------~~~~~~~ 232 (368)
-++|.|..|+|||+|+.++.+.. .. ++-+ .++++-+++.. ...++.+++.+.=.. ...+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 46789999999999999998874 21 1222 55677777654 445555655442101 1112222
Q ss_pred hH---------HHHHHHHh--cCeeEEEEEcC
Q 044878 233 LN---------SVQLKLKE--AKKFLIVLDDV 253 (368)
Q Consensus 233 ~~---------~l~~~l~~--~kr~LlVlDdv 253 (368)
.. .+.+.++. .+.+||++||+
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 22 23344553 38999999998
No 339
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.22 E-value=0.025 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999987653
No 340
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.22 E-value=0.084 Score=44.72 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=22.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-.+|.|-|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998874
No 341
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.025 Score=45.35 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34789999999999999999865
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.20 E-value=0.025 Score=45.35 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=21.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999988653
No 343
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.19 E-value=0.026 Score=46.20 Aligned_cols=26 Identities=31% Similarity=0.115 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..--|.|+|.+|+|||||++.+....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998753
No 344
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.19 E-value=0.032 Score=47.65 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=57.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC----------CCCChHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC----------GLTDLNSVQLK 239 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~----------~~~~~~~l~~~ 239 (368)
-.|.+.|.||+||||+|..+........++ +..+.+...-+... ..++..+..... ...++..+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~-V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~l~~~--- 80 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVR-VMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMDLDAL--- 80 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECCHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCC-EEEEEeCCCCChhH--HHHhcCccccCcceeecCCcccccccHHHH---
Confidence 347789999999999998888775333333 33444433222221 122222222110 11233332
Q ss_pred HHhcCeeEEEEEcCccC------ChhhHHHhhhhcCCCCCCcEEEEEeCCh
Q 044878 240 LKEAKKFLIVLDDVWDK------KYELWQALKSPFMAGAPGSRIIVTTRSM 284 (368)
Q Consensus 240 l~~~kr~LlVlDdvw~~------~~~~~~~l~~~l~~~~~gs~IivTtR~~ 284 (368)
+.. +.=++|+|++-.. ....|..+...++ .|-.++.|+...
T Consensus 81 L~~-~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 81 LKA-APSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp HHH-CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred Hhc-CCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 333 5568999987432 1235777766554 466788888744
No 345
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.18 E-value=0.025 Score=45.11 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.|+|.+|+|||||.+.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 346
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.18 E-value=0.025 Score=45.17 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.|+|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988654
No 347
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.18 E-value=0.025 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|.+|+|||||.+.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998763
No 348
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.15 E-value=0.019 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.+|.|+|++|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998765
No 349
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.14 E-value=0.025 Score=52.25 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...++|+|+.|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999998765
No 350
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.13 E-value=0.026 Score=45.08 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.0
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 3789999999999999988654
No 351
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.13 E-value=0.032 Score=44.94 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..--|.|+|.+|+|||||.+.+....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCC
Confidence 34568899999999999999987653
No 352
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.11 E-value=0.038 Score=44.69 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....-|.|+|..|+|||||...+....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc
Confidence 345678899999999999999988763
No 353
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.11 E-value=0.028 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.6
Q ss_pred EEEEecCCcchHHHHHHHHhhh
Q 044878 172 IPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|.|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 6899999999999999997653
No 354
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.11 E-value=0.028 Score=44.97 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|.+|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 457899999999999999987653
No 355
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.11 E-value=0.074 Score=58.28 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=54.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 242 (368)
.-+++.|.|++|+||||||.++.... ...=..++|++....++.. .++.++.+.. ...+.+++...+..
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~-~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 44689999999999999999998773 2233478888887776643 2444443321 12344555544432
Q ss_pred ----cCeeEEEEEcCccC
Q 044878 243 ----AKKFLIVLDDVWDK 256 (368)
Q Consensus 243 ----~kr~LlVlDdvw~~ 256 (368)
.+.-+||+|.+...
T Consensus 456 lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 456 LARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHhcCCCEEEECCHHHh
Confidence 25669999998543
No 356
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.10 E-value=0.034 Score=45.66 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|.|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4456889999999999999999876
No 357
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.08 E-value=0.038 Score=49.61 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=26.2
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-+++|.+.+.. .+++++|+.|+|||||.+.+. .
T Consensus 155 gi~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~-~ 187 (302)
T 2yv5_A 155 GIDELVDYLEG---------FICILAGPSGVGKSSILSRLT-G 187 (302)
T ss_dssp THHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH-S
T ss_pred CHHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH-H
Confidence 35666666532 478999999999999999998 5
No 358
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.06 E-value=0.077 Score=58.16 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=53.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhccCCC-----CCCChHHHHHHHHh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESITLSSC-----GLTDLNSVQLKLKE 242 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~~-----~~~~~~~l~~~l~~ 242 (368)
.-.++.|.|++|+||||||.++.... ...-..++|++.....+.. . .+.++.... ...+.+++...+..
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~a-a~~g~~VlyiS~Ees~~ql--~---A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEECTTSCCCHH--H---HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHH-HHcCCCeEEEeccchHHHH--H---HHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 34689999999999999999998874 2222357787766655432 1 444443211 22355666666643
Q ss_pred ----cCeeEEEEEcCccC
Q 044878 243 ----AKKFLIVLDDVWDK 256 (368)
Q Consensus 243 ----~kr~LlVlDdvw~~ 256 (368)
.+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 36679999999654
No 359
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.06 E-value=0.033 Score=51.15 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|+|+|++|+|||||...+...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999864
No 360
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.05 E-value=0.028 Score=45.44 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999997653
No 361
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.04 E-value=0.028 Score=52.30 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5899999999999999999974
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.03 E-value=0.032 Score=47.03 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.....|.|+|++|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999998763
No 363
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.03 E-value=0.057 Score=49.36 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+..+++|+|++|+|||||+..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45688999999999999999998654
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.03 E-value=0.031 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999998765
No 365
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.02 E-value=0.028 Score=46.20 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..--|.|+|.+|+|||||+..+.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999998877653
No 366
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.00 E-value=0.031 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..--|.|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3455789999999999999998765
No 367
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.99 E-value=0.033 Score=48.81 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
++|+|.|.||+||||+|..+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l 25 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL 25 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH
Confidence 578889999999999999988764
No 368
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.99 E-value=0.018 Score=52.91 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.+++|+|+.|+|||||.+.+.-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999974
No 369
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.98 E-value=0.039 Score=46.66 Aligned_cols=105 Identities=10% Similarity=-0.011 Sum_probs=52.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC--CCCHHHHHHHHHHHhccCCC--CCCChHHHHHHHHhcC
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD--DFDVLRISKAILESITLSSC--GLTDLNSVQLKLKEAK 244 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~--~~~~~~l~~~il~~l~~~~~--~~~~~~~l~~~l~~~k 244 (368)
-.+..++|..|.||||.+.....+....... ++.+.... .+... .+.+.++.... ...+...+...+. .
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~k-Vli~k~~~d~R~ge~----~i~s~~g~~~~a~~~~~~~~~~~~~~--~ 100 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQH-AIVFKPCIDNRYSEE----DVVSHNGLKVKAVPVSASKDIFKHIT--E 100 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCC-EEEEECC---------------------CCEEECSSGGGGGGGCC--S
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCE-EEEEEeccCCcchHH----HHHhhcCCeeEEeecCCHHHHHHHHh--c
Confidence 4688899999999999887776653222222 22233221 12222 34444432211 1122222211111 2
Q ss_pred ee-EEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeCC
Q 044878 245 KF-LIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTRS 283 (368)
Q Consensus 245 r~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR~ 283 (368)
+| +|++|.+.-.+.+.++.+...-+ .|-.||+|.++
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLD 137 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECS
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEecc
Confidence 35 99999997765556655544322 36799999985
No 370
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.98 E-value=0.027 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=18.6
Q ss_pred EEEEEecCCcchHHHHHHHHhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-|+|+|+.|+|||||.+.++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3589999999999999998753
No 371
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.97 E-value=0.071 Score=50.95 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=34.2
Q ss_pred EEEEEecCCcchHHHH-HHHHhhhcc------cccc-CeEEEEecCCC-CHHHHHHHHHH
Q 044878 171 VIPLVGMGGIRKTALS-QEVYNDKLT------EAFE-PKAWVCVSDDF-DVLRISKAILE 221 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa-~~v~~~~~~------~~F~-~~~wv~vs~~~-~~~~l~~~il~ 221 (368)
-++|.|..|+|||+|| ..+.+.. . ++-+ .++++-+++.. .+.++.+++..
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 4789999999999995 5676663 2 2345 36778888765 34555666554
No 372
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.97 E-value=0.029 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.1
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.|+|.+|+|||||...+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999988753
No 373
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.95 E-value=0.14 Score=43.81 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=52.4
Q ss_pred ccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh--ccccc-cCeEEEEecCCCCHHHHHHHHHHHhcc
Q 044878 149 EDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK--LTEAF-EPKAWVCVSDDFDVLRISKAILESITL 225 (368)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~F-~~~~wv~vs~~~~~~~l~~~il~~l~~ 225 (368)
....+++..+..+ +.+.|.|+.|+||||+.....-+. ..... ...+.+......-...+.+.+...++.
T Consensus 64 ~~q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 64 KFESEILEAISQN--------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp GGHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 3445555555432 468899999999998766554332 22222 234444444433334444555444332
Q ss_pred CCC---------------C-----CCChHHHHHHHHhc--CeeEEEEEcCcc
Q 044878 226 SSC---------------G-----LTDLNSVQLKLKEA--KKFLIVLDDVWD 255 (368)
Q Consensus 226 ~~~---------------~-----~~~~~~l~~~l~~~--kr~LlVlDdvw~ 255 (368)
... . ......+...+... +--+||+|.+..
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~ 187 (235)
T 3llm_A 136 EPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHE 187 (235)
T ss_dssp CTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTS
T ss_pred ccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCcc
Confidence 210 0 01234555555443 334899999975
No 374
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.95 E-value=0.14 Score=50.65 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=29.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh--ccccccCeEEEEecCCCCHHHH
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK--LTEAFEPKAWVCVSDDFDVLRI 215 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~--~~~~F~~~~wv~vs~~~~~~~l 215 (368)
+++.|.|++|+||||++..+.... ....-...+.+..+..-....+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L 212 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHH
Confidence 578899999999999998877653 1112234666665554333333
No 375
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.94 E-value=0.037 Score=44.77 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....-|.|+|.+|+|||||...+....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 345668899999999999999987653
No 376
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.94 E-value=0.03 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=19.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.--|.|+|.+|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 445789999999999999777654
No 377
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.93 E-value=0.031 Score=46.13 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-|.|+|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998875
No 378
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.92 E-value=0.031 Score=44.68 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.2
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
--|.|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998864
No 379
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.89 E-value=0.033 Score=45.48 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||.+.+....
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999988654
No 380
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.89 E-value=0.065 Score=50.80 Aligned_cols=83 Identities=8% Similarity=0.148 Sum_probs=50.3
Q ss_pred EEEEEecCCcchHHHHHHHHhhh-cccc--ccCeEEEEecCCC-CHHHHHHHHHHHhccC-------CCCCCCh------
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK-LTEA--FEPKAWVCVSDDF-DVLRISKAILESITLS-------SCGLTDL------ 233 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~-~~~~--F~~~~wv~vs~~~-~~~~l~~~il~~l~~~-------~~~~~~~------ 233 (368)
-++|.|..|+|||+|+.++.++. ..+. =+.++++-+++.. ...++.+++...=... ..+....
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 46788999999999999999874 2111 1356677777654 4456666665431111 1111111
Q ss_pred ---HHHHHHHH--hcCeeEEEEEcC
Q 044878 234 ---NSVQLKLK--EAKKFLIVLDDV 253 (368)
Q Consensus 234 ---~~l~~~l~--~~kr~LlVlDdv 253 (368)
-.+.+.++ +.+.+||++||+
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 12333444 239999999997
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.87 E-value=0.06 Score=50.64 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|+|||||.+.+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998765
No 382
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.87 E-value=0.033 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|..|+|||||...+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999987653
No 383
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.87 E-value=0.036 Score=51.38 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|+.|+|||||++.+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4468999999999999999998765
No 384
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.86 E-value=0.079 Score=47.07 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....-|+|+|.+|+|||||...+....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 345679999999999999999998653
No 385
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.86 E-value=0.031 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+....
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3467899999999999999887653
No 386
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.071 Score=43.61 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-|.|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999999865
No 387
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.86 E-value=0.023 Score=47.63 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....++|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999887653
No 388
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.85 E-value=0.032 Score=45.60 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|.+|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 457899999999999999998754
No 389
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.84 E-value=0.051 Score=50.17 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.+.++|+|+|.+|+|||||.+.+....
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 356789999999999999999988653
No 390
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.81 E-value=0.033 Score=45.01 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45668899999999999999998764
No 391
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.80 E-value=0.023 Score=49.80 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+...|.|.|..|+||||+++.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988876
No 392
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.79 E-value=0.033 Score=45.36 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..--|.|+|.+|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999998653
No 393
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.73 E-value=0.041 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEEEEEecCCcchHHHHHHHHh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999864
No 394
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.72 E-value=0.034 Score=45.54 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998753
No 395
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.72 E-value=0.037 Score=44.99 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-|.|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999854
No 396
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.71 E-value=0.029 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+|.|.|+.|+||||+++.+...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998775
No 397
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.70 E-value=0.043 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.++|+|.|.||+||||+|..+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~L 26 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAAL 26 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHH
Confidence 3678889999999999999988764
No 398
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.69 E-value=0.038 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999987
No 399
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.68 E-value=0.027 Score=45.63 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=21.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.++|.+|+|||||...+....
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457899999999999999988753
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.67 E-value=0.035 Score=45.15 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.5
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|.+|+|||||...+.+..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 457899999999999999987653
No 401
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.66 E-value=0.027 Score=45.58 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....-|.|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34566889999999999999998765
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.66 E-value=0.036 Score=45.12 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC
Confidence 34568899999999999999998654
No 403
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.66 E-value=0.047 Score=43.68 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999997653
No 404
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.66 E-value=0.03 Score=51.69 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999875
No 405
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.63 E-value=0.041 Score=53.06 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=33.2
Q ss_pred CceecccccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
|..+.|.+-.+.+.+..-... ++..+|.+.|+.|+||||+|+.+....
T Consensus 372 P~~f~rpeV~~vLr~~~~~~~----~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESNPPRP----KQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp CTTTSCHHHHHHHHHHSCCGG----GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhccccc----ccceEEEecccCCCCHHHHHHHHHHHH
Confidence 345555555555555432111 345789999999999999999999884
No 406
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.63 E-value=0.036 Score=44.92 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..-|.|+|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3467899999999999999988653
No 407
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.63 E-value=0.035 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..--|+|+|..|+|||||...+....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34568899999999999999988754
No 408
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.04 Score=45.35 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|.+|+|||||...+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 457899999999999999988753
No 409
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.60 E-value=0.037 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.4
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|.+|+|||||...+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 457799999999999999988653
No 410
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.58 E-value=0.037 Score=45.99 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 44568899999999999999987653
No 411
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.04 Score=45.47 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.3
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|+|+|..|+|||||...+....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998653
No 412
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.038 Score=44.72 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..--|.|+|.+|+|||||...+....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34567899999999999999987654
No 413
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.53 E-value=0.05 Score=45.23 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-|+|+|.+|+|||||.+.+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998754
No 414
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.51 E-value=0.038 Score=45.96 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....-|.|+|.+|+|||||...+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 345678899999999999999987653
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.51 E-value=0.041 Score=46.17 Aligned_cols=26 Identities=31% Similarity=0.115 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||++.+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999998763
No 416
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.039 Score=45.66 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+....
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457899999999999999988763
No 417
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.50 E-value=0.04 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
.--|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999998874
No 418
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.50 E-value=0.041 Score=49.52 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=24.1
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
+....|+|+|.+|+|||||...+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 667899999999999999999998753
No 419
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.49 E-value=0.03 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=20.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
....-|.|+|.+|+|||||.+.+..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3456788999999999999999853
No 420
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.49 E-value=0.055 Score=48.49 Aligned_cols=34 Identities=12% Similarity=0.371 Sum_probs=26.9
Q ss_pred cHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 150 DKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-++++...+.. .+++|+|+.|+|||||.+.+...
T Consensus 159 gv~~lf~~l~g---------eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHhcC---------CeEEEECCCCCcHHHHHHHhccc
Confidence 35666666642 47899999999999999999865
No 421
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.042 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|+|+|.+|+|||||++.+....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34568899999999999999987653
No 422
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.48 E-value=0.042 Score=45.72 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.2
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34568899999999999999998764
No 423
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.48 E-value=0.018 Score=56.91 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=32.3
Q ss_pred CCceecccccHHHHHHHHhcCCCCC-----CCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 141 EPAVYGRDEDKDRMLDMVLKNDPSD-----AANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 141 ~~~~~Gr~~~~~~l~~~L~~~~~~~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+.++|.+..++.+.-.|....... .....-+.++|++|+|||+||+.+.+.
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 3567777765555544444321000 000014789999999999999999876
No 424
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.45 E-value=0.042 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=22.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....|+|+|.+|+|||||...+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999998653
No 425
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.45 E-value=0.04 Score=45.45 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|+|+|.+|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4457899999999999999998764
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.45 E-value=0.042 Score=47.14 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-++|.|++|+||||+|+.+.+.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999876
No 427
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.45 E-value=0.089 Score=45.05 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=19.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-..|.|-|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998874
No 428
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.42 E-value=0.048 Score=52.11 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=32.5
Q ss_pred EEEEEEecCCcchHHHH-HHHHhhhcccccc-CeEEEEecCCCC-HHHHHHHHHH
Q 044878 170 RVIPLVGMGGIRKTALS-QEVYNDKLTEAFE-PKAWVCVSDDFD-VLRISKAILE 221 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~F~-~~~wv~vs~~~~-~~~l~~~il~ 221 (368)
.-++|.|..|+|||+|| ..+.+. . .-+ .++++-+++... ..++.+++..
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~-~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~ 215 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ-Q--GQNVICVYVAIGQKASSVAQVVTNFQE 215 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC-C--TTTCEEEEEEESCCHHHHHHHHHHTGG
T ss_pred CEEEEecCCCCCccHHHHHHHHHh-h--cCCcEEEEEEcCCCchHHHHHHHHHHh
Confidence 34789999999999995 577775 3 244 346777887653 3444444443
No 429
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.41 E-value=0.049 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|.++|++|+||||+|+.+...
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999775
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.41 E-value=0.04 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=20.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3445789999999999999977664
No 431
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.39 E-value=0.53 Score=47.90 Aligned_cols=99 Identities=13% Similarity=0.184 Sum_probs=52.1
Q ss_pred ccHHHHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhh-ccccccCeEEEEecCCCCHHHHHHHHHHHhccCC
Q 044878 149 EDKDRMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDK-LTEAFEPKAWVCVSDDFDVLRISKAILESITLSS 227 (368)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~~~~ 227 (368)
.....+...+... .++.|+|+.|+||||++..+.-.. ....-...+.+......-..++...+...++...
T Consensus 97 ~q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v 168 (773)
T 2xau_A 97 AQRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKL 168 (773)
T ss_dssp GGHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCch
Confidence 4455666666432 468899999999999665554332 2221133354444433223344444444432211
Q ss_pred C--------------C-----CCChHHHHHHHHhc----CeeEEEEEcCcc
Q 044878 228 C--------------G-----LTDLNSVQLKLKEA----KKFLIVLDDVWD 255 (368)
Q Consensus 228 ~--------------~-----~~~~~~l~~~l~~~----kr~LlVlDdvw~ 255 (368)
. . ..+...+...+... +--+||||.+..
T Consensus 169 ~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 169 GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred hheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 0 0 01234455444432 556899999964
No 432
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.38 E-value=0.038 Score=53.91 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.-.++.|+|+.|+|||||++.+....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 34789999999999999999998863
No 433
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.35 E-value=0.046 Score=45.11 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 456789999999999999999865
No 434
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.34 E-value=0.041 Score=45.71 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..-|.|+|.+|+|||||...+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999988753
No 435
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.33 E-value=0.043 Score=45.02 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..-|.|+|.+|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999988654
No 436
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.32 E-value=0.038 Score=51.92 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
++|+|+.|+|||||.+.++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999754
No 437
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.30 E-value=0.044 Score=45.01 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+....
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3457899999999999999998654
No 438
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.30 E-value=0.031 Score=50.85 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999875
No 439
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.038 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.+..-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999764
No 440
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.27 E-value=0.045 Score=45.06 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|..|+|||||...+....
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998754
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.27 E-value=0.044 Score=46.00 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....|.|+|.+|+|||||...+....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567899999999999999998754
No 442
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.27 E-value=0.045 Score=45.15 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=21.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998764
No 443
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.27 E-value=0.19 Score=48.46 Aligned_cols=59 Identities=10% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC-HHHHHHHH
Q 044878 153 RMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD-VLRISKAI 219 (368)
Q Consensus 153 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~i 219 (368)
+.++.|..-. +-.-++|.|..|+|||+|++.+.+.. +-+.++++-+++... ..++.+++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~~---~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKWS---DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHHS---SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHHHH
Confidence 3556665421 22458999999999999999987752 234677888888765 34444443
No 444
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.25 E-value=0.047 Score=44.52 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-|.|+|..|+|||||...+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999865
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.25 E-value=0.045 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999998864
No 446
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.24 E-value=0.044 Score=45.23 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....-|.|+|.+|+|||||...+....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456788999999999999999988764
No 447
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.23 E-value=0.045 Score=45.53 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..--|.|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998765
No 448
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.23 E-value=0.045 Score=45.05 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|..|+|||||...+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457899999999999999988653
No 449
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.23 E-value=0.056 Score=46.04 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....|.|+|.+|+|||||...+....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678899999999999999998763
No 450
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.23 E-value=0.048 Score=45.47 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998654
No 451
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.21 E-value=0.056 Score=45.37 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=22.5
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..+|.|.|+.|+||||+++.+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999873
No 452
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.21 E-value=0.29 Score=42.01 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=52.7
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHHHHhc---cC-C-------CC-----CCChHH
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAILESIT---LS-S-------CG-----LTDLNS 235 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il~~l~---~~-~-------~~-----~~~~~~ 235 (368)
+.|+|+.|.|||.+|..+... .. ..++++ +... .+..++.+.+. .. . .. ....+.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~-~~---~~~liv-~P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~ 181 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINE-LS---TPTLIV-VPTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDS 181 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHH-SC---SCEEEE-ESSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH-cC---CCEEEE-eCCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHH
Confidence 678999999999999888765 21 123333 3221 23333333322 11 0 00 011233
Q ss_pred HHHHHHhc--CeeEEEEEcCccCChhhHHHhhhhcCCCCCCcEEEEEeC
Q 044878 236 VQLKLKEA--KKFLIVLDDVWDKKYELWQALKSPFMAGAPGSRIIVTTR 282 (368)
Q Consensus 236 l~~~l~~~--kr~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~IivTtR 282 (368)
+....... +--+||+|++.......+..+...++ ...++.+|..
T Consensus 182 l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSAT 227 (237)
T 2fz4_A 182 AYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTAT 227 (237)
T ss_dssp HHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEES
T ss_pred HHhhHHHhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEecC
Confidence 33222222 34589999998765566777766554 2335555643
No 453
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.16 E-value=0.06 Score=47.35 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999998765
No 454
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.15 E-value=0.048 Score=44.75 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|..|+|||||...+....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999987653
No 455
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.15 E-value=0.056 Score=46.45 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....-|+|+|.+|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678999999999999999998753
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.13 E-value=0.065 Score=42.58 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.1
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
..+..|+|+.|+|||||..+++-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999988864
No 457
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.12 E-value=0.049 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.-|.|+|.+|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998753
No 458
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.11 E-value=0.047 Score=45.29 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-|.|+|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4466889999999999999998765
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.10 E-value=0.046 Score=45.33 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=20.1
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..--|.|+|.+|+|||||...+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34567899999999999999987653
No 460
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.07 E-value=0.17 Score=52.48 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=19.6
Q ss_pred cEEEEEEecCCcchHHHHHHH
Q 044878 169 FRVIPLVGMGGIRKTALSQEV 189 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v 189 (368)
-.+++|+|+.|.|||||.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999998
No 461
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.05 E-value=0.053 Score=45.32 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.-|.|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999988753
No 462
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.05 E-value=0.05 Score=45.85 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.--|.|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999998764
No 463
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.04 E-value=0.065 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+.+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3457899999999999999888654
No 464
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.02 E-value=0.055 Score=44.57 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
..-|.|+|.+|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998764
No 465
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.01 E-value=0.053 Score=44.05 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.4
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988754
No 466
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.97 E-value=0.051 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||.+.+..-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 79999999999999999998753
No 467
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.95 E-value=0.052 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.6
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..-|.|+|.+|+|||||...+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 355889999999999999998754
No 468
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.93 E-value=0.19 Score=47.82 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=47.6
Q ss_pred EEEEEecCCcchHHHH-HHHHhhhcccccc-CeEEEEecCCC-CHHHHHHHHHHHhccCC-------CCCCChHH-----
Q 044878 171 VIPLVGMGGIRKTALS-QEVYNDKLTEAFE-PKAWVCVSDDF-DVLRISKAILESITLSS-------CGLTDLNS----- 235 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa-~~v~~~~~~~~F~-~~~wv~vs~~~-~~~~l~~~il~~l~~~~-------~~~~~~~~----- 235 (368)
-++|.|..|+|||+|| ..+.+. .+-+ .++++-+++.. .+.++.+++.+.=.... .+......
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY 240 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhh---ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHH
Confidence 4789999999999996 566664 2334 35788888765 34566666544311111 11111111
Q ss_pred ----HHHHHHhc-CeeEEEEEcC
Q 044878 236 ----VQLKLKEA-KKFLIVLDDV 253 (368)
Q Consensus 236 ----l~~~l~~~-kr~LlVlDdv 253 (368)
+.+.++.. +..||++||+
T Consensus 241 ~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 241 AGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHhcCCCEEEEecCh
Confidence 22223333 9999999998
No 469
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.93 E-value=0.057 Score=44.97 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|.|+|.+|+|||||+..+....
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 34568899999999999999987653
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.92 E-value=0.11 Score=45.51 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
....|.++|.+|+|||||...+....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999998653
No 471
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.92 E-value=0.17 Score=42.23 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=29.7
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
.|+|=|.-|+||||.++.+.+.. ...--.+....-+......+.++.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L-~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL-EKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 36777999999999999998874 22222333333333333444444444
No 472
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.90 E-value=0.057 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.--|.|+|.+|+|||||...+....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4557899999999999999988653
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.89 E-value=0.058 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.8
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|+|||||++.+...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999886
No 474
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.054 Score=45.83 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=19.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYN 191 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (368)
..-|.|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45588999999999999998874
No 475
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.89 E-value=0.063 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+|.++|++|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999999999999876
No 476
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.87 E-value=0.11 Score=45.45 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
+...|+|+|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4467889999999999999999865
No 477
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.86 E-value=0.059 Score=44.81 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
.-|.|+|.+|+|||||...+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999988753
No 478
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.86 E-value=0.089 Score=44.04 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....+|+|+|+.|+||+|+|..+.+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHH
Confidence 35679999999999999999888664
No 479
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.85 E-value=0.062 Score=43.84 Aligned_cols=24 Identities=13% Similarity=0.232 Sum_probs=20.9
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..-|.|+|.+|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999865
No 480
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.84 E-value=0.044 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.0
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
..-|.|+|..|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998765
No 481
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.82 E-value=0.11 Score=43.12 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=26.9
Q ss_pred EEEEEE-ecCCcchHHHHHHHHhhhccccccCeEEEEecCCCC
Q 044878 170 RVIPLV-GMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFD 211 (368)
Q Consensus 170 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~ 211 (368)
++|+|+ +.||+||||+|..+.... ...-..+.-|......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l-a~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL-SRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH-HHCCCeEEEEECCCCCC
Confidence 578887 679999999999988764 22222345555544333
No 482
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.82 E-value=0.056 Score=45.18 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
...-|+|+|.+|+|||||...+....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568899999999999999988653
No 483
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.80 E-value=0.14 Score=46.88 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++.+.|.||+||||+|..+...
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~ 41 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQ 41 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH
Confidence 45688999999999999999887654
No 484
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.79 E-value=0.23 Score=48.07 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCC-CHHHHHHH
Q 044878 153 RMLDMVLKNDPSDAANFRVIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDF-DVLRISKA 218 (368)
Q Consensus 153 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~ 218 (368)
+.++.|..-. +-.-++|.|..|+|||+|+..+.+.. +-+.++++-+++.. ...+++++
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~~---~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKWS---DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHHHHHH
Confidence 3566665432 22468899999999999999998862 23567788787764 33344444
No 485
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.76 E-value=0.12 Score=46.35 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.....|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 45678999999999999999998765
No 486
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.75 E-value=0.05 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.8
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.++.-
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 487
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.75 E-value=0.17 Score=46.10 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 167 ANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...+++.+.|.||+||||+|..+...
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~ 39 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQ 39 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 34578888999999999999988755
No 488
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.74 E-value=0.11 Score=49.28 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=32.2
Q ss_pred ecccccHHHHHHHHhcCC-C--C--CCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 145 YGRDEDKDRMLDMVLKND-P--S--DAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 145 ~Gr~~~~~~l~~~L~~~~-~--~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.|.++-.+.+.+.+.... . . ......-++|+|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 345566666666664321 0 0 0134567899999999999999999765
No 489
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.73 E-value=0.044 Score=45.04 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.7
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.--|.|+|..|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999998765
No 490
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.72 E-value=0.12 Score=44.47 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=25.0
Q ss_pred EEEEecCCcchHHHHHHHHhhhccccccCeEEEEecC
Q 044878 172 IPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSD 208 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~ 208 (368)
|+|.|.||+||||+|..+.....+.. ..+.-|....
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY-DKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC-SCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence 66789999999999999987742222 3455555443
No 491
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.72 E-value=0.056 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEEecCCcchHHHHHHHHhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.+++|+|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 492
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.70 E-value=0.057 Score=52.63 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred cEEEEEEecCCcchHHHHHHHHhh
Q 044878 169 FRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
-.+++|+|+.|+|||||++.+.--
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999753
No 493
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.68 E-value=0.035 Score=45.17 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=10.6
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
...-|.|+|.+|+|||||...+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 494
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.65 E-value=0.04 Score=56.43 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=36.6
Q ss_pred CceecccccHHHHHHHHhcCCCC-------CCCCcEEEEEEecCCcchHHHHHHHHhh
Q 044878 142 PAVYGRDEDKDRMLDMVLKNDPS-------DAANFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 142 ~~~~Gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.++.|.+..++.|.+.+...... .......+.++|++|+||||||+.+.+.
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 45778888888888776432100 0023456889999999999999999987
No 495
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.64 E-value=0.062 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.5
Q ss_pred EEEEEecCCcchHHHHHHHHhhh
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
-|.|+|.+|+|||+|+..+.++.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 36789999999999999887653
No 496
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.55 E-value=0.064 Score=45.21 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=20.7
Q ss_pred EEEEEEecCCcchHHHHHHHHhhh
Q 044878 170 RVIPLVGMGGIRKTALSQEVYNDK 193 (368)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (368)
--|.|+|.+|+|||||...+....
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457799999999999999988754
No 497
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.54 E-value=0.053 Score=50.97 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEecCCcchHHHHHHHHhh
Q 044878 172 IPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (368)
|+|+|+.|+|||||++.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 599999999999999999865
No 498
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.48 E-value=0.072 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
.-.+++|+|+.|+|||||.+.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4479999999999999999998753
No 499
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.47 E-value=0.085 Score=45.91 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCcchHHHHHHHHhh
Q 044878 168 NFRVIPLVGMGGIRKTALSQEVYND 192 (368)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (368)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998765
No 500
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.44 E-value=0.14 Score=50.98 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=33.2
Q ss_pred EEEEEecCCcchHHHHHHHHhhhccccccCeEEEEecCCCCHHHHHHHHH
Q 044878 171 VIPLVGMGGIRKTALSQEVYNDKLTEAFEPKAWVCVSDDFDVLRISKAIL 220 (368)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~F~~~~wv~vs~~~~~~~l~~~il 220 (368)
+..|+||+|+|||+.+-++....+.. ...+.++...+..+..++..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHH
Confidence 56799999999998655554443332 2468888777777777766654
Done!