Query 044880
Match_columns 91
No_of_seqs 100 out of 266
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 13:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_m 60S ribosomal protein L 100.0 1.3E-54 4.3E-59 292.2 8.7 91 1-91 2-92 (92)
2 3izc_m 60S ribosomal protein R 100.0 1.9E-54 6.5E-59 291.4 8.5 91 1-91 2-92 (92)
3 4a17_Y RPL37A, 60S ribosomal p 100.0 1.7E-53 5.9E-58 291.5 8.7 90 1-90 2-91 (103)
4 3cc2_Z 50S ribosomal protein L 100.0 6.1E-50 2.1E-54 278.6 6.9 91 1-91 26-116 (116)
5 3j21_i 50S ribosomal protein L 100.0 3.5E-49 1.2E-53 261.6 6.2 80 3-82 3-82 (83)
6 3jyw_9 60S ribosomal protein L 100.0 3.8E-45 1.3E-49 236.8 2.2 71 10-80 1-71 (72)
7 1vq8_Z 50S ribosomal protein L 100.0 6.4E-44 2.2E-48 235.2 6.9 82 10-91 2-83 (83)
8 1ffk_W Ribosomal protein L37AE 100.0 6E-44 2.1E-48 231.5 3.3 72 9-80 1-72 (73)
9 3j21_g 50S ribosomal protein L 98.7 9E-10 3.1E-14 66.8 -0.3 34 25-62 4-37 (51)
10 3j20_Y 30S ribosomal protein S 96.2 0.0033 1.1E-07 37.1 2.9 29 35-63 19-47 (50)
11 3ga8_A HTH-type transcriptiona 95.9 0.025 8.5E-07 35.0 5.8 47 37-89 4-66 (78)
12 2k4x_A 30S ribosomal protein S 95.6 0.0056 1.9E-07 36.8 1.9 31 33-63 16-46 (55)
13 1wii_A Hypothetical UPF0222 pr 95.6 0.013 4.4E-07 38.2 3.7 44 32-75 20-69 (85)
14 1pft_A TFIIB, PFTFIIBN; N-term 95.4 0.0073 2.5E-07 34.6 1.9 32 34-65 4-36 (50)
15 1dl6_A Transcription factor II 95.3 0.0078 2.7E-07 36.2 1.8 34 35-68 11-45 (58)
16 1d0q_A DNA primase; zinc-bindi 94.9 0.0091 3.1E-07 38.8 1.5 51 35-87 37-91 (103)
17 3o9x_A Uncharacterized HTH-typ 93.5 0.08 2.7E-06 34.3 3.8 29 37-65 4-48 (133)
18 3u50_C Telomerase-associated p 93.0 0.048 1.7E-06 39.1 2.3 25 37-62 44-68 (172)
19 1l1o_C Replication protein A 7 92.9 0.052 1.8E-06 38.3 2.4 28 37-65 45-74 (181)
20 4gzn_C ZFP-57, zinc finger pro 92.5 0.032 1.1E-06 32.7 0.7 32 33-64 2-43 (60)
21 4bbr_M Transcription initiatio 92.3 0.087 3E-06 40.7 3.1 33 32-64 18-53 (345)
22 2au3_A DNA primase; zinc ribbo 92.2 0.049 1.7E-06 42.5 1.5 31 36-69 35-69 (407)
23 1bbo_A Human enhancer-binding 92.2 0.044 1.5E-06 29.6 0.9 30 35-64 1-40 (57)
24 1vd4_A Transcription initiatio 92.0 0.033 1.1E-06 31.7 0.3 32 33-64 12-50 (62)
25 1nui_A DNA primase/helicase; z 91.8 0.074 2.5E-06 38.5 2.0 26 37-62 16-42 (255)
26 3uk3_C Zinc finger protein 217 91.8 0.056 1.9E-06 29.1 1.1 31 34-64 3-43 (57)
27 1twf_I B12.6, DNA-directed RNA 91.8 0.18 6.2E-06 33.8 3.8 30 36-65 5-38 (122)
28 2drp_A Protein (tramtrack DNA- 91.4 0.049 1.7E-06 30.3 0.6 32 33-64 8-51 (66)
29 1twf_L ABC10-alpha, DNA-direct 90.9 0.042 1.4E-06 34.5 -0.0 29 32-61 25-53 (70)
30 1x6e_A Zinc finger protein 24; 90.5 0.08 2.7E-06 30.2 0.9 32 33-64 12-53 (72)
31 2adr_A ADR1; transcription reg 90.4 0.081 2.8E-06 28.8 0.9 30 35-64 2-41 (60)
32 2con_A RUH-035 protein, NIN on 89.8 0.15 5E-06 32.8 1.8 21 33-53 28-48 (79)
33 2ds5_A CLPX, ATP-dependent CLP 89.8 0.051 1.8E-06 32.3 -0.3 25 35-59 11-39 (51)
34 3h0g_I DNA-directed RNA polyme 89.8 0.16 5.5E-06 33.7 2.1 31 36-66 5-39 (113)
35 2lv2_A Insulinoma-associated p 89.5 0.097 3.3E-06 32.6 0.8 32 33-64 26-67 (85)
36 1x5w_A Zinc finger protein 64, 89.2 0.095 3.2E-06 29.6 0.5 32 33-64 7-48 (70)
37 2ct1_A Transcriptional repress 88.8 0.094 3.2E-06 30.2 0.3 32 33-64 13-56 (77)
38 1ovx_A ATP-dependent CLP prote 88.6 0.065 2.2E-06 33.7 -0.5 25 35-59 18-46 (67)
39 3k1f_M Transcription initiatio 88.6 0.23 7.9E-06 36.9 2.3 32 33-64 19-53 (197)
40 3h0g_L DNA-directed RNA polyme 87.9 0.14 4.8E-06 31.7 0.7 30 32-63 18-48 (63)
41 2d9h_A Zinc finger protein 692 87.9 0.086 3E-06 30.3 -0.3 32 33-64 5-49 (78)
42 4gop_C Putative uncharacterize 87.7 0.25 8.4E-06 38.7 2.2 31 37-68 310-342 (444)
43 2lce_A B-cell lymphoma 6 prote 87.7 0.18 6.1E-06 28.7 1.0 34 32-65 14-57 (74)
44 1x6h_A Transcriptional repress 87.5 0.13 4.5E-06 29.6 0.4 32 33-64 13-58 (86)
45 1llm_C Chimera of ZIF23-GCN4; 87.1 0.2 6.9E-06 29.4 1.1 12 53-64 31-42 (88)
46 2cot_A Zinc finger protein 435 86.8 0.22 7.5E-06 28.6 1.1 32 33-64 16-57 (77)
47 2kmk_A Zinc finger protein GFI 86.7 0.21 7.2E-06 28.3 1.0 33 32-64 26-68 (82)
48 1a1h_A QGSR zinc finger peptid 86.7 0.22 7.6E-06 28.8 1.1 32 33-64 32-73 (90)
49 3qt1_I DNA-directed RNA polyme 86.3 0.23 8E-06 34.2 1.2 32 34-65 23-58 (133)
50 2m0e_A Zinc finger and BTB dom 85.9 0.28 9.5E-06 22.1 1.0 10 35-44 2-11 (29)
51 3k7a_M Transcription initiatio 85.7 0.19 6.5E-06 38.4 0.5 32 33-64 19-53 (345)
52 2jrp_A Putative cytoplasmic pr 85.3 0.67 2.3E-05 29.9 2.9 34 36-71 3-36 (81)
53 1qyp_A RNA polymerase II; tran 85.2 1.1 3.7E-05 26.0 3.6 31 34-64 14-54 (57)
54 2eps_A POZ-, at HOOK-, and zin 85.1 0.12 4.2E-06 28.1 -0.6 32 33-64 10-52 (54)
55 2ctd_A Zinc finger protein 512 84.8 0.2 7E-06 31.0 0.2 35 30-64 29-73 (96)
56 2kvh_A Zinc finger and BTB dom 84.4 0.32 1.1E-05 22.1 0.8 10 35-44 3-12 (27)
57 1ard_A Yeast transcription fac 84.0 0.37 1.3E-05 21.8 1.0 10 35-44 2-11 (29)
58 2csh_A Zinc finger protein 297 84.0 0.37 1.3E-05 29.1 1.2 33 33-65 35-77 (110)
59 1rik_A E6APC1 peptide; E6-bind 83.8 0.34 1.2E-05 22.1 0.8 10 35-44 2-11 (29)
60 2kvg_A Zinc finger and BTB dom 83.7 0.25 8.4E-06 22.8 0.2 11 34-44 2-12 (27)
61 2lvu_A Zinc finger and BTB dom 84.1 0.22 7.4E-06 22.6 0.0 11 35-45 2-12 (26)
62 1klr_A Zinc finger Y-chromosom 83.5 0.41 1.4E-05 21.7 1.0 10 35-44 2-11 (30)
63 2xzm_9 RPS31E; ribosome, trans 83.5 0.55 1.9E-05 34.1 2.1 29 35-63 113-141 (189)
64 2kvf_A Zinc finger and BTB dom 83.4 0.4 1.4E-05 21.8 0.9 11 34-44 2-12 (28)
65 2yt9_A Zinc finger-containing 83.3 0.4 1.4E-05 28.1 1.1 32 33-64 33-76 (95)
66 2dmd_A Zinc finger protein 64, 83.3 0.39 1.4E-05 28.1 1.1 31 34-64 35-75 (96)
67 1znf_A 31ST zinc finger from X 83.3 0.43 1.5E-05 21.4 1.0 10 35-44 1-10 (27)
68 2dlq_A GLI-kruppel family memb 83.2 0.35 1.2E-05 29.4 0.9 31 34-64 34-77 (124)
69 1paa_A Yeast transcription fac 83.1 0.45 1.5E-05 21.8 1.1 10 35-44 2-11 (30)
70 1p7a_A BF3, BKLF, kruppel-like 83.0 0.43 1.5E-05 23.3 1.0 13 33-45 9-21 (37)
71 2m0f_A Zinc finger and BTB dom 83.0 0.39 1.3E-05 21.7 0.8 9 35-43 2-10 (29)
72 2wbt_A B-129; zinc finger; 2.7 82.9 0.24 8.1E-06 31.0 -0.1 34 31-64 70-111 (129)
73 2kfq_A FP1; protein, de novo p 82.8 0.45 1.5E-05 22.9 1.0 10 35-44 2-11 (32)
74 1f2i_G Fusion of N-terminal 17 82.1 0.44 1.5E-05 26.8 0.9 32 33-64 17-60 (73)
75 3cng_A Nudix hydrolase; struct 81.7 0.96 3.3E-05 30.6 2.7 25 37-61 5-33 (189)
76 2lt7_A Transcriptional regulat 81.5 0.37 1.3E-05 31.6 0.5 32 33-64 48-89 (133)
77 2lvt_A Zinc finger and BTB dom 82.3 0.3 1E-05 22.5 0.0 11 35-45 2-12 (29)
78 2m0d_A Zinc finger and BTB dom 81.3 0.51 1.7E-05 21.3 0.8 11 34-44 2-12 (30)
79 2ctu_A Zinc finger protein 483 80.7 0.12 4.2E-06 28.7 -1.8 33 33-65 16-51 (73)
80 1rim_A E6APC2 peptide; E6-bind 80.3 0.63 2.1E-05 22.6 1.0 10 35-44 2-11 (33)
81 2els_A Zinc finger protein 406 80.0 0.58 2E-05 22.7 0.8 12 33-44 7-18 (36)
82 2elr_A Zinc finger protein 406 79.8 0.68 2.3E-05 22.2 1.1 12 33-44 7-18 (36)
83 2elt_A Zinc finger protein 406 79.7 0.61 2.1E-05 22.4 0.9 13 33-45 7-19 (36)
84 2elx_A Zinc finger protein 406 79.6 0.6 2E-05 22.2 0.8 12 34-45 6-17 (35)
85 2elp_A Zinc finger protein 406 79.3 0.64 2.2E-05 22.7 0.9 11 34-44 8-18 (37)
86 2lvr_A Zinc finger and BTB dom 80.6 0.38 1.3E-05 22.0 0.0 12 34-45 2-13 (30)
87 2ghf_A ZHX1, zinc fingers and 78.8 0.67 2.3E-05 29.6 1.1 32 33-64 16-61 (102)
88 1srk_A Zinc finger protein ZFP 78.4 0.74 2.5E-05 22.0 0.9 13 33-45 5-17 (35)
89 2elv_A Zinc finger protein 406 78.2 0.69 2.4E-05 22.4 0.8 13 33-45 7-19 (36)
90 2i13_A AART; DNA binding, zinc 78.0 0.73 2.5E-05 30.5 1.1 10 54-63 134-143 (190)
91 2elq_A Zinc finger protein 406 77.6 0.77 2.6E-05 22.2 0.9 13 33-45 7-19 (36)
92 2elm_A Zinc finger protein 406 77.4 0.75 2.6E-05 22.7 0.8 13 33-45 7-19 (37)
93 2elo_A Zinc finger protein 406 76.9 0.62 2.1E-05 22.6 0.4 12 33-44 7-18 (37)
94 1gh9_A 8.3 kDa protein (gene M 76.4 1.5 5.1E-05 27.4 2.1 51 36-88 5-57 (71)
95 2ytb_A Zinc finger protein 32; 74.6 1.1 3.7E-05 22.3 1.0 13 33-45 9-21 (42)
96 1fv5_A First zinc finger of U- 74.4 0.75 2.6E-05 24.4 0.3 13 33-45 6-18 (36)
97 2epr_A POZ-, at HOOK-, and zin 74.4 1.1 3.7E-05 23.4 1.0 11 33-43 38-48 (48)
98 2ee8_A Protein ODD-skipped-rel 74.3 0.66 2.3E-05 27.7 0.1 31 34-64 44-84 (106)
99 3u5c_f 40S ribosomal protein S 74.1 1.7 5.7E-05 30.1 2.1 32 33-64 116-149 (152)
100 2eos_A B-cell lymphoma 6 prote 73.9 1.2 4.2E-05 22.3 1.1 13 33-45 9-21 (42)
101 2wbs_A Krueppel-like factor 4; 73.5 1.2 4.1E-05 25.5 1.1 31 34-64 34-76 (89)
102 2jne_A Hypothetical protein YF 73.4 3.1 0.00011 27.9 3.2 36 34-71 31-66 (101)
103 1njq_A Superman protein; zinc- 73.2 1.2 3.9E-05 22.1 0.9 13 33-45 4-16 (39)
104 2epv_A Zinc finger protein 268 72.7 1.3 4.3E-05 22.6 0.9 13 33-45 10-22 (44)
105 2enf_A Zinc finger protein 347 72.5 1.4 4.6E-05 22.5 1.1 13 33-45 10-22 (46)
106 2eq1_A Zinc finger protein 347 72.1 1.3 4.4E-05 22.6 0.9 13 33-45 10-22 (46)
107 2yte_A Zinc finger protein 473 72.1 1.4 4.6E-05 21.9 1.0 13 33-45 8-20 (42)
108 2yu5_A Zinc finger protein 473 71.8 1.3 4.5E-05 22.4 0.9 13 33-45 10-22 (44)
109 2epc_A Zinc finger protein 32; 71.5 1.4 4.8E-05 21.9 0.9 13 33-45 9-21 (42)
110 2ept_A Zinc finger protein 32; 71.5 1.4 4.8E-05 21.9 0.9 13 33-45 8-20 (41)
111 1k81_A EIF-2-beta, probable tr 71.4 3.6 0.00012 22.3 2.7 27 37-63 2-31 (36)
112 2yti_A Zinc finger protein 347 71.4 1.5 5E-05 22.4 1.0 13 33-45 10-22 (46)
113 2en7_A Zinc finger protein 268 71.2 1.4 4.9E-05 22.1 1.0 13 33-45 10-22 (44)
114 2jp9_A Wilms tumor 1; DNA bind 71.1 2.2 7.6E-05 25.6 1.9 12 53-64 66-77 (119)
115 2eof_A Zinc finger protein 268 70.9 1.4 4.8E-05 22.1 0.8 13 33-45 10-22 (44)
116 2eoh_A Zinc finger protein 28 70.8 1.5 5.3E-05 22.4 1.0 13 33-45 10-22 (46)
117 2emz_A ZFP-95, zinc finger pro 70.7 1.6 5.3E-05 22.4 1.0 13 33-45 10-22 (46)
118 2eon_A ZFP-95, zinc finger pro 70.7 1.6 5.4E-05 22.4 1.1 13 33-45 10-22 (46)
119 2bzw_B BCL2-antagonist of cell 70.6 1.2 4.1E-05 23.5 0.5 17 15-31 9-25 (27)
120 2emi_A Zinc finger protein 484 70.6 1.5 5.1E-05 22.4 0.9 13 33-45 10-22 (46)
121 2en2_A B-cell lymphoma 6 prote 70.6 1.4 4.9E-05 21.9 0.8 13 33-45 9-21 (42)
122 2el5_A Zinc finger protein 268 70.6 1.5 5.2E-05 21.8 0.9 13 33-45 8-20 (42)
123 2ytp_A Zinc finger protein 484 70.3 1.5 5.2E-05 22.4 0.9 13 33-45 10-22 (46)
124 2emj_A Zinc finger protein 28 70.2 1.4 4.7E-05 22.6 0.8 13 33-45 10-22 (46)
125 2en3_A ZFP-95, zinc finger pro 70.1 1.5 5.3E-05 22.3 0.9 13 33-45 10-22 (46)
126 2ytf_A Zinc finger protein 268 70.0 1.6 5.4E-05 22.2 0.9 13 33-45 10-22 (46)
127 1wjp_A Zinc finger protein 295 70.0 0.62 2.1E-05 28.1 -0.8 31 34-64 41-80 (107)
128 2eov_A Zinc finger protein 484 69.9 1.7 5.7E-05 22.1 1.1 13 33-45 10-22 (46)
129 2ep1_A Zinc finger protein 484 69.9 1.7 5.7E-05 22.1 1.0 13 33-45 10-22 (46)
130 2em4_A Zinc finger protein 28 69.8 1.6 5.4E-05 22.3 0.9 13 33-45 10-22 (46)
131 2eq2_A Zinc finger protein 347 69.7 1.7 5.7E-05 22.2 1.0 13 33-45 10-22 (46)
132 4esj_A Type-2 restriction enzy 69.5 2.5 8.6E-05 32.4 2.3 37 33-69 32-85 (257)
133 2eoy_A Zinc finger protein 473 69.5 1.6 5.5E-05 22.3 0.9 13 33-45 10-22 (46)
134 2yts_A Zinc finger protein 484 69.4 1.5 5.2E-05 22.2 0.8 13 33-45 10-22 (46)
135 2eow_A Zinc finger protein 347 69.3 1.6 5.4E-05 22.2 0.9 13 33-45 10-22 (46)
136 2yto_A Zinc finger protein 484 69.3 1.6 5.6E-05 22.3 0.9 13 33-45 10-22 (46)
137 2emg_A Zinc finger protein 484 69.3 1.7 5.7E-05 22.2 1.0 13 33-45 10-22 (46)
138 2yth_A Zinc finger protein 224 69.3 1.8 6.1E-05 22.1 1.1 13 33-45 10-22 (46)
139 2emb_A Zinc finger protein 473 69.2 1.6 5.4E-05 22.0 0.9 13 33-45 10-22 (44)
140 2enh_A Zinc finger protein 28 68.8 1.7 6E-05 22.2 1.0 13 33-45 10-22 (46)
141 2eoj_A Zinc finger protein 268 68.5 1.4 4.7E-05 22.2 0.5 12 33-44 10-21 (44)
142 2yrj_A Zinc finger protein 473 68.3 1.6 5.6E-05 22.1 0.8 13 33-45 10-22 (46)
143 2eop_A Zinc finger protein 268 68.2 1.9 6.6E-05 21.8 1.1 13 33-45 10-22 (46)
144 2eoz_A Zinc finger protein 473 68.2 1.3 4.6E-05 22.6 0.4 13 33-45 10-22 (46)
145 2em3_A Zinc finger protein 28 68.2 1.7 5.7E-05 22.2 0.8 13 33-45 10-22 (46)
146 2em6_A Zinc finger protein 224 68.0 1.9 6.6E-05 22.0 1.0 13 33-45 10-22 (46)
147 2ep3_A Zinc finger protein 484 68.0 1.8 6.2E-05 22.0 0.9 13 33-45 10-22 (46)
148 2eom_A ZFP-95, zinc finger pro 67.8 1.9 6.7E-05 22.1 1.0 13 33-45 10-22 (46)
149 2eq0_A Zinc finger protein 347 67.8 1.5 5.2E-05 22.3 0.6 13 33-45 10-22 (46)
150 2emk_A Zinc finger protein 28 67.7 2 6.8E-05 21.9 1.1 13 33-45 10-22 (46)
151 3iuf_A Zinc finger protein UBI 67.5 1.7 5.7E-05 23.0 0.7 13 33-45 5-17 (48)
152 2eou_A Zinc finger protein 473 67.3 1.9 6.6E-05 21.8 0.9 13 33-45 10-22 (44)
153 2em2_A Zinc finger protein 28 67.3 1.8 6.1E-05 22.1 0.8 13 33-45 10-22 (46)
154 2ytn_A Zinc finger protein 347 67.3 2 6.7E-05 21.9 1.0 13 33-45 10-22 (46)
155 2ema_A Zinc finger protein 347 67.3 1.8 6.3E-05 22.0 0.9 13 33-45 10-22 (46)
156 2ytj_A Zinc finger protein 484 67.2 1.8 6.2E-05 22.0 0.8 13 33-45 10-22 (46)
157 2eoq_A Zinc finger protein 224 67.1 2.1 7E-05 21.8 1.0 13 33-45 10-22 (46)
158 2eoo_A ZFP-95, zinc finger pro 66.9 2 6.8E-05 21.9 0.9 13 33-45 10-22 (46)
159 2eq4_A Zinc finger protein 224 66.8 2 6.7E-05 21.8 0.9 13 33-45 10-22 (46)
160 2epw_A Zinc finger protein 268 66.8 2 6.8E-05 21.8 0.9 13 33-45 10-22 (46)
161 2ely_A Zinc finger protein 224 66.7 2.2 7.4E-05 21.8 1.1 13 33-45 10-22 (46)
162 2en9_A Zinc finger protein 28 66.7 2 6.9E-05 21.9 1.0 13 33-45 10-22 (46)
163 2dlk_A Novel protein; ZF-C2H2 66.7 1.5 5E-05 24.7 0.4 31 33-63 36-78 (79)
164 2em0_A Zinc finger protein 224 66.7 2.1 7.2E-05 21.7 1.0 13 33-45 10-22 (46)
165 2em9_A Zinc finger protein 224 66.6 1.9 6.4E-05 21.9 0.8 13 33-45 10-22 (46)
166 2eor_A Zinc finger protein 224 66.5 1.9 6.6E-05 21.8 0.8 13 33-45 10-22 (46)
167 2eq3_A Zinc finger protein 347 66.5 1.6 5.5E-05 22.2 0.5 13 33-45 10-22 (46)
168 2epz_A Zinc finger protein 28 66.4 2.1 7.2E-05 21.8 1.0 13 33-45 10-22 (46)
169 2eml_A Zinc finger protein 28 66.4 1.9 6.5E-05 21.9 0.8 13 33-45 10-22 (46)
170 2epu_A Zinc finger protein 32; 66.4 1.5 5.2E-05 22.3 0.4 12 33-44 10-21 (45)
171 2emh_A Zinc finger protein 484 66.3 2 6.7E-05 21.9 0.8 13 33-45 10-22 (46)
172 2epx_A Zinc finger protein 28 66.3 2.2 7.6E-05 21.6 1.1 13 33-45 10-22 (47)
173 2eme_A Zinc finger protein 473 66.2 2.1 7.1E-05 21.7 0.9 13 33-45 10-22 (46)
174 2emy_A Zinc finger protein 268 66.2 1.9 6.6E-05 21.9 0.8 13 33-45 10-22 (46)
175 2ytr_A Zinc finger protein 347 66.2 2.1 7.1E-05 21.7 0.9 13 33-45 10-22 (46)
176 2yrm_A B-cell lymphoma 6 prote 66.1 2.3 7.8E-05 21.5 1.1 13 33-45 8-20 (43)
177 1vk6_A NADH pyrophosphatase; 1 65.9 3.6 0.00012 30.4 2.5 28 35-62 107-134 (269)
178 2ene_A Zinc finger protein 347 65.8 2.1 7.3E-05 21.7 0.9 13 33-45 10-22 (46)
179 2ytq_A Zinc finger protein 268 65.8 2.3 7.8E-05 21.7 1.1 13 33-45 10-22 (46)
180 2el4_A Zinc finger protein 268 65.8 2.1 7.1E-05 21.7 0.9 13 33-45 10-22 (46)
181 2em7_A Zinc finger protein 224 65.5 2.2 7.5E-05 21.7 0.9 13 33-45 10-22 (46)
182 2ytm_A Zinc finger protein 28 65.3 2.2 7.4E-05 21.9 0.9 13 33-45 10-22 (46)
183 2elz_A Zinc finger protein 224 65.3 2.4 8.1E-05 21.6 1.1 13 33-45 10-22 (46)
184 2emf_A Zinc finger protein 484 65.3 2.2 7.6E-05 21.7 0.9 13 33-45 10-22 (46)
185 1ubd_C Protein (YY1 zinc finge 65.2 2 6.8E-05 26.1 0.8 34 32-65 31-76 (124)
186 2js4_A UPF0434 protein BB2007; 65.1 4.3 0.00015 25.0 2.4 28 36-63 9-36 (70)
187 1yui_A GAGA-factor; complex (D 65.1 2.1 7.2E-05 22.8 0.8 13 33-45 22-34 (54)
188 2enc_A Zinc finger protein 224 64.9 2.3 7.8E-05 21.6 0.9 13 33-45 10-22 (46)
189 2ytg_A ZFP-95, zinc finger pro 64.8 2.2 7.5E-05 21.7 0.8 13 33-45 10-22 (46)
190 2jr6_A UPF0434 protein NMA0874 64.5 4.3 0.00015 24.9 2.3 28 36-63 9-36 (68)
191 2em5_A ZFP-95, zinc finger pro 64.3 2.4 8.1E-05 21.6 0.9 13 33-45 10-22 (46)
192 2hf1_A Tetraacyldisaccharide-1 64.2 4.2 0.00014 24.9 2.2 28 36-63 9-36 (68)
193 2iyb_E Testin, TESS, TES; LIM 64.2 4.4 0.00015 23.1 2.2 34 37-70 4-49 (65)
194 2emp_A Zinc finger protein 347 64.0 2.4 8.3E-05 21.5 0.9 13 33-45 10-22 (46)
195 2yu8_A Zinc finger protein 347 63.9 2.4 8.3E-05 21.5 0.9 13 33-45 10-22 (46)
196 2emx_A Zinc finger protein 268 63.9 2.4 8.1E-05 21.3 0.9 13 33-45 8-20 (44)
197 1x0t_A Ribonuclease P protein 63.9 4 0.00014 27.2 2.2 48 15-62 42-103 (120)
198 2ep2_A Zinc finger protein 484 63.8 2.5 8.4E-05 21.5 0.9 13 33-45 10-22 (46)
199 2eox_A Zinc finger protein 473 63.4 1.9 6.4E-05 21.7 0.4 11 34-44 11-21 (44)
200 2em8_A Zinc finger protein 224 63.4 2.5 8.6E-05 21.5 0.9 13 33-45 10-22 (46)
201 2ytt_A Zinc finger protein 473 63.3 2.7 9.1E-05 21.4 1.0 13 33-45 10-22 (46)
202 2el6_A Zinc finger protein 268 63.3 2.5 8.4E-05 21.6 0.9 13 33-45 10-22 (46)
203 2emm_A ZFP-95, zinc finger pro 63.1 2.6 8.8E-05 21.3 0.9 13 33-45 10-22 (46)
204 2epq_A POZ-, at HOOK-, and zin 62.7 2.6 8.7E-05 21.4 0.9 11 32-42 35-45 (45)
205 2pk7_A Uncharacterized protein 62.6 4.3 0.00015 25.0 2.0 29 35-63 8-36 (69)
206 2ytd_A Zinc finger protein 473 62.6 2.5 8.5E-05 21.5 0.8 13 33-45 10-22 (46)
207 2ytk_A Zinc finger protein 347 62.2 2.7 9.4E-05 21.3 0.9 13 33-45 10-22 (46)
208 2en8_A Zinc finger protein 224 62.1 2.6 9E-05 21.3 0.9 13 33-45 10-22 (46)
209 2yso_A ZFP-95, zinc finger pro 61.9 2.6 9.1E-05 21.3 0.8 13 33-45 10-22 (46)
210 3pwf_A Rubrerythrin; non heme 61.5 3.3 0.00011 29.0 1.5 12 53-64 138-149 (170)
211 2k3r_A Ribonuclease P protein 61.2 4.9 0.00017 27.0 2.3 48 15-62 37-98 (123)
212 2ysp_A Zinc finger protein 224 61.1 2.2 7.5E-05 21.7 0.4 13 33-45 10-22 (46)
213 2ep0_A Zinc finger protein 28 61.0 2.8 9.5E-05 21.3 0.8 13 33-45 10-22 (46)
214 1lko_A Rubrerythrin all-iron(I 60.7 6 0.00021 27.8 2.8 19 47-65 149-167 (191)
215 1l8d_A DNA double-strand break 59.7 2.7 9.2E-05 26.7 0.7 11 35-45 47-57 (112)
216 1sp2_A SP1F2; zinc finger, tra 59.4 3.5 0.00012 18.9 1.0 10 35-44 2-13 (31)
217 2eoe_A Zinc finger protein 347 59.0 2.5 8.4E-05 21.4 0.4 13 33-45 10-22 (46)
218 2gqj_A Zinc finger protein KIA 58.8 5.2 0.00018 23.9 1.9 11 34-44 53-63 (98)
219 2en6_A Zinc finger protein 268 58.6 2.6 8.8E-05 21.4 0.4 13 33-45 10-22 (46)
220 1tfi_A Transcriptional elongat 58.3 15 0.00051 21.0 3.8 31 33-63 7-47 (50)
221 3a43_A HYPD, hydrogenase nicke 58.0 5 0.00017 27.2 1.9 19 49-67 66-84 (139)
222 1yuz_A Nigerythrin; rubrythrin 58.0 2.5 8.6E-05 30.3 0.4 24 35-61 171-194 (202)
223 2akl_A PHNA-like protein PA012 57.9 5.4 0.00018 28.1 2.1 34 30-64 22-55 (138)
224 3f6q_B LIM and senescent cell 57.3 7 0.00024 22.0 2.2 35 36-70 12-56 (72)
225 4e2x_A TCAB9; kijanose, tetron 57.1 25 0.00085 26.1 5.8 32 34-66 11-66 (416)
226 1wjv_A Cell growth regulating 56.9 6.8 0.00023 25.1 2.3 38 35-72 10-56 (79)
227 2jny_A Uncharacterized BCR; st 56.3 7 0.00024 23.9 2.2 29 35-63 10-38 (67)
228 2en1_A Zinc finger protein 224 56.3 3 0.0001 21.1 0.4 13 33-45 10-22 (46)
229 2eod_A TNF receptor-associated 56.1 4.8 0.00016 22.2 1.3 31 34-64 9-48 (66)
230 2ab3_A ZNF29; zinc finger prot 54.5 3.5 0.00012 18.3 0.4 9 35-43 2-12 (29)
231 1wfe_A Riken cDNA 2310008M20 p 54.4 7.1 0.00024 24.9 2.1 30 32-66 22-53 (86)
232 2fc7_A ZZZ3 protein; structure 53.9 1.1 3.9E-05 28.2 -1.8 39 19-61 5-44 (82)
233 1x4s_A Protein FON, zinc finge 53.3 1.9 6.6E-05 26.3 -0.7 13 32-44 23-35 (59)
234 2epp_A POZ-, at HOOK-, and zin 53.1 4.4 0.00015 24.0 0.9 13 33-45 11-23 (66)
235 2d74_B Translation initiation 52.6 5.8 0.0002 27.8 1.5 41 22-62 90-134 (148)
236 3htk_C E3 SUMO-protein ligase 52.2 19 0.00066 27.4 4.5 56 32-87 178-254 (267)
237 1p91_A Ribosomal RNA large sub 52.0 8.1 0.00028 26.6 2.2 24 36-61 3-26 (269)
238 1zfd_A SWI5; DNA binding motif 51.9 5.6 0.00019 18.2 1.0 11 34-44 2-14 (32)
239 2kdx_A HYPA, hydrogenase/ureas 50.6 16 0.00056 23.6 3.4 19 49-67 69-87 (119)
240 2xqn_T Testin, TESS; metal-bin 50.5 7.7 0.00026 24.6 1.8 35 36-70 64-110 (126)
241 1a7i_A QCRP2 (LIM1); LIM domai 50.3 17 0.00057 21.3 3.2 36 35-70 7-51 (81)
242 2eln_A Zinc finger protein 406 50.1 5.2 0.00018 21.0 0.8 13 33-45 7-21 (38)
243 3po3_S Transcription elongatio 49.1 11 0.00038 26.6 2.6 29 35-63 137-175 (178)
244 2zkr_2 60S ribosomal protein L 48.8 5.9 0.0002 26.3 1.0 24 36-62 17-40 (97)
245 2zjr_Z 50S ribosomal protein L 48.6 5.1 0.00018 24.0 0.7 20 36-60 31-50 (60)
246 1pqv_S STP-alpha, transcriptio 48.4 22 0.00075 26.9 4.3 29 35-63 268-306 (309)
247 1va1_A Transcription factor SP 48.4 6.2 0.00021 19.1 0.9 12 33-44 6-19 (37)
248 1kbe_A Kinase suppressor of RA 47.7 13 0.00044 21.3 2.3 23 36-63 15-37 (49)
249 2j7j_A Transcription factor II 47.5 5.2 0.00018 22.3 0.5 32 32-64 28-72 (85)
250 4glx_A DNA ligase; inhibitor, 47.5 6.4 0.00022 32.8 1.3 25 34-58 404-428 (586)
251 1x3h_A Leupaxin; paxillin fami 47.4 11 0.00037 21.9 2.0 34 37-70 17-58 (80)
252 2e9h_A EIF-5, eukaryotic trans 46.3 18 0.00061 25.5 3.3 43 21-63 88-136 (157)
253 2d9k_A FLN29 gene product; zin 46.3 6.4 0.00022 23.0 0.8 14 31-44 39-52 (75)
254 1nee_A EIF-2-beta, probable tr 46.2 8.3 0.00028 26.6 1.5 40 23-62 89-132 (138)
255 2lcq_A Putative toxin VAPC6; P 46.1 8.3 0.00028 26.0 1.5 9 35-43 132-140 (165)
256 2owa_A Arfgap-like finger doma 46.0 11 0.00038 25.9 2.1 40 21-60 22-63 (138)
257 2epa_A Krueppel-like factor 10 46.0 5.1 0.00018 22.1 0.3 33 32-64 14-60 (72)
258 2d8z_A Four and A half LIM dom 45.9 13 0.00046 20.9 2.2 35 36-70 6-48 (70)
259 1x4k_A Skeletal muscle LIM-pro 45.8 14 0.00046 21.0 2.2 34 37-70 7-50 (72)
260 1yuz_A Nigerythrin; rubrythrin 45.0 10 0.00034 27.1 1.8 15 51-65 169-183 (202)
261 1dvp_A HRS, hepatocyte growth 44.5 9.5 0.00032 27.0 1.6 27 36-66 162-190 (220)
262 1wyh_A SLIM 2, skeletal muscle 44.5 6.9 0.00023 22.3 0.7 35 36-70 6-50 (72)
263 1x63_A Skeletal muscle LIM-pro 44.2 12 0.00042 21.8 1.9 34 37-70 17-60 (82)
264 1bhi_A CRE-BP1, ATF-2; CRE bin 43.6 7.1 0.00024 18.7 0.6 11 34-44 5-17 (38)
265 2dlo_A Thyroid receptor-intera 43.2 13 0.00044 21.8 1.9 35 36-70 16-58 (81)
266 2ebt_A Krueppel-like factor 5; 43.2 8.6 0.00029 22.2 1.1 11 34-44 74-84 (100)
267 2cu8_A Cysteine-rich protein 2 43.1 18 0.00062 20.8 2.5 35 36-70 10-53 (76)
268 2cur_A Skeletal muscle LIM-pro 42.9 12 0.00042 21.1 1.7 35 36-70 6-48 (69)
269 2yqq_A Zinc finger HIT domain- 42.1 7.4 0.00025 23.2 0.6 12 33-44 21-32 (56)
270 1g47_A Pinch protein; LIM doma 42.1 11 0.00037 21.7 1.4 36 35-70 11-56 (77)
271 3c5k_A HD6, histone deacetylas 41.8 33 0.0011 22.4 3.9 36 36-79 25-60 (109)
272 3flo_B DNA polymerase alpha ca 41.7 31 0.0011 25.0 4.1 29 35-63 22-59 (206)
273 2d8y_A Eplin protein; LIM doma 41.0 20 0.00068 21.5 2.5 36 35-70 15-59 (91)
274 1joc_A EEA1, early endosomal a 40.9 12 0.00041 24.8 1.6 27 37-67 71-99 (125)
275 1iml_A CRIP, cysteine rich int 40.9 18 0.00062 20.8 2.3 34 37-70 2-44 (76)
276 6rxn_A Rubredoxin; electron tr 40.6 12 0.00042 21.3 1.4 12 53-64 4-15 (46)
277 2dmi_A Teashirt homolog 3; zin 40.6 9.8 0.00034 22.7 1.1 10 34-43 79-88 (115)
278 2g2k_A EIF-5, eukaryotic trans 40.5 20 0.00069 25.6 2.8 44 19-62 79-128 (170)
279 1x4u_A Zinc finger, FYVE domai 40.4 14 0.00046 22.7 1.7 27 36-66 15-43 (84)
280 1ncs_A Peptide M30F, transcrip 40.2 9.4 0.00032 19.6 0.8 13 33-45 16-30 (47)
281 3alr_A Nanos protein; zinc-fin 40.1 9.2 0.00032 25.8 0.9 12 34-45 70-81 (106)
282 2d8x_A Protein pinch; LIM doma 39.4 18 0.0006 20.5 2.0 35 36-70 6-48 (70)
283 2a20_A Regulating synaptic mem 39.3 4.3 0.00015 25.1 -0.8 25 37-61 35-59 (62)
284 1qxf_A GR2, 30S ribosomal prot 39.2 21 0.0007 22.2 2.4 28 37-64 9-37 (66)
285 3u6p_A Formamidopyrimidine-DNA 38.7 19 0.00065 26.7 2.6 24 37-60 247-272 (273)
286 2lk0_A RNA-binding protein 5; 38.5 13 0.00044 19.4 1.2 11 52-62 4-14 (32)
287 1mz9_A Cartilage oligomeric ma 38.3 14 0.00046 20.8 1.3 24 18-41 22-45 (45)
288 1x6f_A Zinc finger protein 462 38.1 11 0.00037 22.9 0.9 13 33-45 23-35 (88)
289 2yw8_A RUN and FYVE domain-con 37.8 16 0.00055 22.3 1.7 27 36-66 20-48 (82)
290 2qkd_A Zinc finger protein ZPR 37.8 32 0.0011 27.5 3.9 34 37-70 14-62 (404)
291 1x64_A Alpha-actinin-2 associa 37.2 13 0.00045 22.2 1.3 37 34-70 24-68 (89)
292 1k3x_A Endonuclease VIII; hydr 37.1 21 0.00072 26.2 2.6 24 37-60 236-261 (262)
293 3v2d_5 50S ribosomal protein L 37.1 8.7 0.0003 23.0 0.4 20 36-60 31-50 (60)
294 1vfy_A Phosphatidylinositol-3- 36.9 17 0.00059 21.7 1.7 26 37-66 13-40 (73)
295 1x68_A FHL5 protein; four-and- 36.8 23 0.00079 20.4 2.3 34 37-70 7-52 (76)
296 1k82_A Formamidopyrimidine-DNA 36.8 21 0.00073 26.3 2.6 25 36-60 241-267 (268)
297 1wfk_A Zinc finger, FYVE domai 36.7 18 0.00062 22.6 1.9 28 35-66 9-38 (88)
298 2egq_A FHL1 protein; LIM domai 36.7 20 0.0007 20.5 2.0 34 37-70 17-63 (77)
299 2olm_A Nucleoporin-like protei 36.6 17 0.00057 24.9 1.8 30 31-60 21-52 (140)
300 2xzf_A Formamidopyrimidine-DNA 36.5 22 0.00074 26.3 2.6 25 37-61 244-270 (271)
301 1hcq_A Protein (estrogen recep 36.0 9.4 0.00032 24.0 0.4 27 33-60 2-28 (84)
302 1v6g_A Actin binding LIM prote 36.0 21 0.00071 20.8 2.0 32 37-68 17-56 (81)
303 4adn_A FAR1; antibiotic resist 35.8 23 0.0008 26.3 2.6 43 4-68 148-190 (222)
304 2dar_A PDZ and LIM domain prot 35.4 25 0.00085 21.0 2.3 35 36-70 26-68 (90)
305 1ee8_A MUTM (FPG) protein; bet 35.4 23 0.00077 26.2 2.5 26 36-61 236-263 (266)
306 3j21_V 50S ribosomal protein L 35.1 12 0.00042 23.0 0.8 23 35-57 4-34 (66)
307 2i5o_A DNA polymerase ETA; zin 35.0 11 0.00038 20.9 0.6 11 54-64 10-20 (39)
308 1zfo_A LAsp-1; LIM domain, zin 35.0 14 0.00048 18.8 0.9 9 37-45 5-13 (31)
309 2cuq_A Four and A half LIM dom 34.9 17 0.00057 21.1 1.4 34 37-70 17-58 (80)
310 3iz6_X 40S ribosomal protein S 34.8 11 0.00036 24.6 0.6 43 22-64 19-66 (86)
311 4dvc_A Thiol:disulfide interch 34.8 5.3 0.00018 25.7 -0.9 11 33-43 28-38 (184)
312 3j20_W 30S ribosomal protein S 34.7 28 0.00096 21.3 2.4 28 37-64 17-45 (63)
313 2v3b_B Rubredoxin 2, rubredoxi 34.6 22 0.00076 20.7 1.9 13 53-65 3-15 (55)
314 1vq8_U 50S ribosomal protein L 34.3 11 0.00038 23.2 0.6 22 36-57 4-33 (66)
315 3m7n_A Putative uncharacterize 34.0 21 0.00071 24.7 2.0 24 37-62 142-165 (179)
316 1h7b_A Anaerobic ribonucleotid 33.8 9 0.00031 31.9 0.1 39 20-61 519-566 (605)
317 1x62_A C-terminal LIM domain p 33.7 13 0.00043 21.8 0.7 36 35-70 15-58 (79)
318 3zyq_A Hepatocyte growth facto 33.7 19 0.00063 25.9 1.7 27 37-67 166-194 (226)
319 3mhs_C SAGA-associated factor 33.5 12 0.00042 24.8 0.7 23 49-71 66-88 (99)
320 3sub_A ADP-ribosylation factor 33.2 22 0.00077 25.3 2.1 40 21-60 8-49 (163)
321 2jvx_A NF-kappa-B essential mo 33.2 13 0.00044 19.4 0.6 10 34-43 2-11 (28)
322 2rpc_A Zinc finger protein ZIC 33.1 13 0.00045 23.3 0.8 12 53-64 90-103 (155)
323 2c6a_A Ubiquitin-protein ligas 33.0 16 0.00054 21.3 1.0 11 52-62 12-22 (46)
324 1z2q_A LM5-1; membrane protein 33.0 19 0.00065 22.1 1.5 28 35-66 21-50 (84)
325 2kpi_A Uncharacterized protein 32.9 40 0.0014 19.6 2.9 26 36-63 11-38 (56)
326 1yk4_A Rubredoxin, RD; electro 32.6 27 0.00091 20.2 2.0 13 53-65 2-14 (52)
327 2owo_A DNA ligase; protein-DNA 31.7 19 0.00063 30.5 1.7 24 34-57 404-427 (671)
328 1wg2_A Zinc finger (AN1-like) 31.5 22 0.00077 21.7 1.6 28 33-66 13-41 (64)
329 2zkr_u 60S ribosomal protein L 31.4 13 0.00045 26.4 0.6 22 36-57 4-33 (157)
330 2kn9_A Rubredoxin; metalloprot 30.3 27 0.00092 22.2 1.9 15 51-65 25-39 (81)
331 1faq_A RAF-1; transferase, ser 30.1 27 0.00091 19.0 1.7 25 34-63 13-37 (52)
332 2co8_A NEDD9 interacting prote 29.9 17 0.00059 21.5 0.9 35 35-69 15-58 (82)
333 2dkt_A Ring finger and CHY zin 29.8 39 0.0013 23.5 2.8 30 34-66 82-111 (143)
334 2e6r_A Jumonji/ARID domain-con 29.7 6.2 0.00021 25.0 -1.2 29 46-74 50-90 (92)
335 3gn3_A Putative protein-disulf 29.7 5.1 0.00018 27.4 -1.7 12 33-44 21-32 (182)
336 1s24_A Rubredoxin 2; electron 29.6 28 0.00095 22.4 1.9 15 51-65 33-47 (87)
337 4a17_T RPL24, 60S ribosomal pr 29.5 14 0.00049 26.3 0.6 23 35-57 5-35 (158)
338 1zbd_B Rabphilin-3A; G protein 29.4 48 0.0016 22.3 3.2 25 21-45 36-65 (134)
339 1wfp_A Zinc finger (AN1-like) 29.3 12 0.00042 23.6 0.2 51 9-67 2-52 (74)
340 3izc_Z 60S ribosomal protein R 29.1 16 0.00053 26.0 0.7 23 35-57 3-33 (155)
341 2k1p_A Zinc finger RAN-binding 29.0 15 0.00051 19.3 0.4 12 51-62 4-15 (33)
342 1ptq_A Protein kinase C delta 28.9 32 0.0011 18.5 1.9 27 34-63 10-38 (50)
343 1x61_A Thyroid receptor intera 28.8 27 0.00091 19.7 1.6 35 36-70 6-50 (72)
344 2gai_A DNA topoisomerase I; zi 28.7 11 0.00037 31.3 -0.2 26 38-63 575-607 (633)
345 2k5c_A Uncharacterized protein 28.5 28 0.00095 22.9 1.7 24 52-76 50-73 (95)
346 2zet_C Melanophilin; complex, 28.3 23 0.00078 24.5 1.4 23 50-72 105-131 (153)
347 1tot_A CREB-binding protein; z 28.2 23 0.00078 20.3 1.2 23 33-60 4-26 (52)
348 1r4i_A Androgen receptor; AR, 28.1 22 0.00076 23.2 1.2 25 35-60 7-31 (105)
349 3mjh_B Early endosome antigen 28.1 18 0.00063 19.5 0.7 10 35-44 5-14 (34)
350 1wff_A Riken cDNA 2810002D23 p 28.0 23 0.0008 22.8 1.3 31 33-67 23-53 (85)
351 1x4l_A Skeletal muscle LIM-pro 28.0 25 0.00084 19.9 1.3 35 36-70 6-52 (72)
352 2gli_A Protein (five-finger GL 27.9 24 0.00081 21.9 1.3 11 53-63 97-109 (155)
353 2e2z_A TIM15; protein import, 27.8 41 0.0014 22.3 2.5 31 32-62 10-47 (100)
354 1wfh_A Zinc finger (AN1-like) 27.6 32 0.0011 21.0 1.9 29 32-66 12-41 (64)
355 1x3c_A Zinc finger protein 292 27.6 18 0.0006 22.8 0.6 14 31-44 23-38 (73)
356 2vrw_B P95VAV, VAV1, proto-onc 27.4 30 0.001 26.0 2.0 31 34-67 356-388 (406)
357 2cr8_A MDM4 protein; ZF-ranbp 26.6 25 0.00084 21.0 1.1 11 52-62 10-20 (53)
358 3iz5_Z 60S ribosomal protein L 26.5 18 0.00062 25.9 0.6 23 35-57 5-35 (162)
359 3vk6_A E3 ubiquitin-protein li 26.4 51 0.0018 21.8 2.8 32 32-63 34-71 (101)
360 3dwd_A ADP-ribosylation factor 26.3 28 0.00094 24.4 1.5 38 22-60 26-65 (147)
361 3w0f_A Endonuclease 8-like 3; 26.2 31 0.001 26.3 1.9 26 37-62 253-282 (287)
362 1dx8_A Rubredoxin; electron tr 26.1 28 0.00097 21.2 1.4 14 52-65 6-19 (70)
363 1y02_A CARP2, FYVE-ring finger 26.1 25 0.00086 23.5 1.3 28 36-67 20-49 (120)
364 1jm7_A BRCA1, breast cancer ty 26.0 66 0.0023 19.3 3.2 62 25-86 11-91 (112)
365 1v5n_A PDI-like hypothetical p 25.9 30 0.001 21.6 1.5 25 35-63 47-71 (89)
366 4ayb_P DNA-directed RNA polyme 25.9 13 0.00046 21.8 -0.1 12 53-64 3-14 (48)
367 1rfh_A RAS association (ralgds 25.7 38 0.0013 19.4 1.9 27 33-63 20-46 (59)
368 3sgi_A DNA ligase; HET: DNA AM 25.7 15 0.00051 30.9 0.1 30 34-63 414-447 (615)
369 2enn_A NPKC-theta, protein kin 25.7 35 0.0012 20.5 1.8 27 34-63 33-61 (77)
370 1x4w_A Hypothetical protein FL 25.6 18 0.00061 22.4 0.4 32 32-67 12-45 (67)
371 1vq8_3 50S ribosomal protein L 25.6 20 0.0007 23.4 0.7 23 32-58 65-87 (92)
372 2l3k_A Rhombotin-2, linker, LI 25.5 17 0.00058 23.2 0.3 34 37-70 10-54 (123)
373 2enz_A NPKC-theta, protein kin 25.4 40 0.0014 19.4 1.9 28 33-63 21-50 (65)
374 1vq8_1 50S ribosomal protein L 25.3 26 0.0009 21.1 1.1 22 37-61 19-40 (57)
375 2apo_B Ribosome biogenesis pro 25.2 26 0.00088 21.1 1.1 35 37-77 8-45 (60)
376 2e72_A POGO transposable eleme 25.2 24 0.00082 20.8 0.9 11 34-44 11-21 (49)
377 2l4z_A DNA endonuclease RBBP8, 24.7 46 0.0016 21.4 2.3 36 35-70 61-107 (123)
378 2a66_A Orphan nuclear receptor 24.5 25 0.00087 23.2 1.0 25 34-59 8-32 (113)
379 3fl2_A E3 ubiquitin-protein li 24.4 64 0.0022 20.1 2.9 24 18-45 39-62 (124)
380 1wig_A KIAA1808 protein; LIM d 24.4 24 0.0008 20.5 0.8 34 37-70 7-49 (73)
381 2fnf_X Putative RAS effector N 24.2 39 0.0013 20.2 1.8 27 33-63 33-59 (72)
382 3t7l_A Zinc finger FYVE domain 24.2 36 0.0012 21.2 1.6 29 35-67 20-50 (90)
383 2p57_A GTPase-activating prote 23.6 43 0.0015 23.2 2.1 30 31-60 33-64 (144)
384 1dcq_A PYK2-associated protein 23.6 37 0.0013 23.9 1.8 30 30-59 12-43 (278)
385 3nrl_A Uncharacterized protein 23.4 19 0.00065 23.2 0.2 19 52-71 30-48 (81)
386 2xzm_6 RPS27E; ribosome, trans 23.3 49 0.0017 21.2 2.2 28 37-64 34-62 (81)
387 1nyp_A Pinch protein; LIM doma 23.3 26 0.00089 19.5 0.8 35 36-70 6-48 (66)
388 2db6_A SH3 and cysteine rich d 23.0 35 0.0012 20.3 1.4 27 34-63 27-55 (74)
389 1e8j_A Rubredoxin; iron-sulfur 22.9 25 0.00085 20.3 0.7 12 53-64 3-14 (52)
390 2xjy_A Rhombotin-2; oncoprotei 22.7 47 0.0016 20.8 2.1 34 37-70 68-112 (131)
391 1a6y_A Orphan nuclear receptor 22.7 21 0.00073 22.8 0.4 24 36-60 8-31 (94)
392 1dxg_A Desulforedoxin; non-hem 22.7 46 0.0016 17.5 1.7 13 52-64 5-17 (36)
393 2yuu_A NPKC-delta, protein kin 22.6 47 0.0016 20.0 2.0 27 34-63 27-55 (83)
394 4cpa_I Metallocarboxypeptidase 22.5 11 0.00038 21.0 -0.9 21 39-59 6-27 (38)
395 3uej_A NPKC-delta, protein kin 22.4 48 0.0016 19.0 1.9 27 34-63 19-47 (65)
396 1lv3_A Hypothetical protein YA 22.3 26 0.0009 21.6 0.7 15 34-48 8-22 (68)
397 2k2d_A Ring finger and CHY zin 22.3 31 0.0011 21.4 1.1 24 36-60 38-62 (79)
398 3v2d_6 50S ribosomal protein L 22.2 40 0.0014 19.7 1.5 13 37-49 39-51 (54)
399 2aus_D NOP10, ribosome biogene 22.2 31 0.001 20.9 1.0 35 37-77 7-44 (60)
400 2jw6_A Deformed epidermal auto 22.1 44 0.0015 18.1 1.6 23 34-63 8-30 (52)
401 1b8t_A Protein (CRP1); LIM dom 22.1 43 0.0015 22.8 1.8 34 37-70 117-159 (192)
402 1y8f_A UNC-13 homolog A, MUNC1 22.0 56 0.0019 18.8 2.1 28 33-63 22-51 (66)
403 4rxn_A Rubredoxin; electron tr 21.8 40 0.0014 19.7 1.4 12 53-64 3-14 (54)
404 2l6l_A DNAJ homolog subfamily 21.7 35 0.0012 22.6 1.3 29 34-63 111-143 (155)
405 2eli_A Protein kinase C alpha 21.3 53 0.0018 20.0 2.0 28 33-63 26-55 (85)
406 2han_B Ecdysone receptor; tran 21.2 24 0.00083 23.4 0.4 25 35-60 8-32 (119)
407 1cit_A NGFI-B, protein (orphan 21.0 25 0.00085 22.2 0.4 23 37-60 2-24 (89)
408 2qgp_A HNH endonuclease; Q39X4 21.0 28 0.00097 22.4 0.7 12 33-44 33-44 (112)
409 2nll_B Protein (thyroid hormon 20.8 18 0.00061 23.5 -0.3 22 37-59 3-24 (103)
410 2han_A Protein ultraspiracle; 20.7 25 0.00087 22.3 0.4 24 35-59 10-33 (93)
411 2ej4_A Zinc finger protein ZIC 20.6 32 0.0011 19.5 0.8 10 36-45 63-72 (95)
412 3j21_e 50S ribosomal protein L 20.2 35 0.0012 20.9 1.0 22 37-61 19-40 (62)
No 1
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=100.00 E-value=1.3e-54 Score=292.20 Aligned_cols=91 Identities=97% Similarity=1.470 Sum_probs=89.8
Q ss_pred CCcceeeeeccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHH
Q 044880 1 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 80 (91)
Q Consensus 1 ~k~tkkvgi~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~ 80 (91)
|||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+|++|+++||||||+|+||++.+|++
T Consensus 2 akrtkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~tv~~ 81 (92)
T 3iz5_m 2 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRS 81 (92)
T ss_dssp CSCSSCCTTGGGTTTSSCHHHHHHHHHHHHHHHSCBCCTTTCSSCBEEEETTEEECSSSCCEEECCSSSSCCHHHHHHHH
T ss_pred CcccceeeecCCCcCCcChHHHHHHHHHHHHHhccccCcccCCCeeEecCcceEEcCCCCCEEeCCcccCCCcHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 044880 81 TIRRLREQTES 91 (91)
Q Consensus 81 ~i~rl~e~~~~ 91 (91)
+|+||+|++|+
T Consensus 82 ~irrl~e~~~~ 92 (92)
T 3iz5_m 82 TIRRLREQTEA 92 (92)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhhcC
Confidence 99999999986
No 2
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=100.00 E-value=1.9e-54 Score=291.37 Aligned_cols=91 Identities=66% Similarity=1.109 Sum_probs=89.7
Q ss_pred CCcceeeeeccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHH
Q 044880 1 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 80 (91)
Q Consensus 1 ~k~tkkvgi~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~ 80 (91)
|||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|+++|||+|++|+++||||||+|+||++.+|++
T Consensus 2 akrtkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~tv~~ 81 (92)
T 3izc_m 2 AKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRS 81 (92)
T ss_dssp CSCSSCCTTGGGTCSCSCHHHHHHHHHHHHHHHSCCCCSSSCSSCCEEEETTEEECTTTCCEEECCSSSSCCHHHHHHHH
T ss_pred CcccceeeecCCCcCCcChhHHHHHHHHHHHHhcCCcCCCCCCceeeecccceEEcCCCCCEEeCCcccCCCcHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 044880 81 TIRRLREQTES 91 (91)
Q Consensus 81 ~i~rl~e~~~~ 91 (91)
+|+||+|++|+
T Consensus 82 ~irrl~e~~~~ 92 (92)
T 3izc_m 82 TIRRLREMVEA 92 (92)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhhcC
Confidence 99999999985
No 3
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=100.00 E-value=1.7e-53 Score=291.54 Aligned_cols=90 Identities=62% Similarity=1.059 Sum_probs=88.8
Q ss_pred CCcceeeeeccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHH
Q 044880 1 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 80 (91)
Q Consensus 1 ~k~tkkvgi~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~ 80 (91)
|||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+|++|+++||||||+|+||++.+|++
T Consensus 2 akrTkkvgi~GkyGtRYGaslRK~vkkIE~~q~aky~CpfCgk~~vKR~a~GIW~C~kCg~~~AGGAy~~~T~~a~tv~~ 81 (103)
T 4a17_Y 2 AKRTQKVGITRKYGTRYGASLRKVVKKFEITQHAKYGCPFCGKVAVKRAAVGIWKCKPCKKIIAGGAWELTTPPAVTAKT 81 (103)
T ss_dssp CCCCSSCGGGGGGTTTTCHHHHHHHHHHHHHHHSCEECTTTCCEEEEEEETTEEEETTTTEEEECCSSCSSCHHHHHHHH
T ss_pred CcccceeeecCCCcCCCChhHHHHHHHHHHHhhcCCCCCCCCCceeeecCcceEEcCCCCCEEeCCcccCCCcHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q 044880 81 TIRRLREQTE 90 (91)
Q Consensus 81 ~i~rl~e~~~ 90 (91)
+|+||+|++|
T Consensus 82 ~irrl~e~~~ 91 (103)
T 4a17_Y 82 TMNRLKKLQE 91 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 4
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=100.00 E-value=6.1e-50 Score=278.64 Aligned_cols=91 Identities=32% Similarity=0.660 Sum_probs=72.9
Q ss_pred CCcceeeeeccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHH
Q 044880 1 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 80 (91)
Q Consensus 1 ~k~tkkvgi~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~ 80 (91)
++|||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+|++|+++||||||+|+||++.+|++
T Consensus 26 akrtKkVGi~GkyG~RYGaslRK~vkkiE~~q~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGAy~~~T~~~~t~~~ 105 (116)
T 3cc2_Z 26 ASKSGKTGSSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRR 105 (116)
T ss_dssp --------CGGGGTTCSCHHHHHHHHHHHHHHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHHH
T ss_pred HhccCccccccccccccchHHHHHHHHHHHHhccCCcCCCCCCceeEecCceeEECCCCCCEEECCCcccccchhhhHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 044880 81 TIRRLREQTES 91 (91)
Q Consensus 81 ~i~rl~e~~~~ 91 (91)
+|+||+|++|.
T Consensus 106 ~irrl~e~~~~ 116 (116)
T 3cc2_Z 106 SIRAALSEDEE 116 (116)
T ss_dssp C----------
T ss_pred HHHHHHHhccC
Confidence 99999999873
No 5
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.5e-49 Score=261.55 Aligned_cols=80 Identities=41% Similarity=0.811 Sum_probs=75.8
Q ss_pred cceeeeeccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHHHH
Q 044880 3 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTI 82 (91)
Q Consensus 3 ~tkkvgi~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~~i 82 (91)
|||||||+||||+|||++|||+|++||++||++|+|||||+++|+|+++|||+|++|+++||||||+|+||++.++.++|
T Consensus 3 ~tkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AGGAy~~~T~~~~t~~r~~ 82 (83)
T 3j21_i 3 GTKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLPVTPAGKAVRRIT 82 (83)
T ss_dssp ---CCCSGGGGTTCSCHHHHHHHHHHHHHHHSCBCCSSSCSSCEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHHHSC
T ss_pred ccceeeecCCCcCCcChhHHHHHHHHHHHhhcccCCCCCCCceeEecCcCeEEcCCCCCEEeCCccccCccHhhhhhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=3.8e-45 Score=236.82 Aligned_cols=71 Identities=63% Similarity=1.140 Sum_probs=69.7
Q ss_pred ccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHH
Q 044880 10 VGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 80 (91)
Q Consensus 10 ~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~ 80 (91)
+||||+|||++|||+|++||++||++|+|||||+++|+|+++|||+|++|+++||||||+|+||++.+|++
T Consensus 1 ~GkyG~RYG~slRK~vkkie~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~tv~s 71 (72)
T 3jyw_9 1 TGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRS 71 (72)
T ss_dssp CTTTTTSSCHHHHTTTHHHHHHHHSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSSSSSCCHHHHHHTT
T ss_pred CCcccCccChhHHHHHHHHHHHhccCccCCCCCCceeEecCCCeEECCCCCCEEeCCccccCCccceeeec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999986
No 7
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=100.00 E-value=6.4e-44 Score=235.25 Aligned_cols=82 Identities=33% Similarity=0.682 Sum_probs=71.4
Q ss_pred ccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHHHHHHHHhhh
Q 044880 10 VGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 89 (91)
Q Consensus 10 ~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~~i~rl~e~~ 89 (91)
+||||+|||++|||+|++||++||.+|+|||||++.|+|.++|||+|.+||++||||||+|+||++.+|+++|+||+|++
T Consensus 2 ~gk~g~rYG~~lRk~vk~ie~~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay~~~t~~~~~~~~~i~r~~~~~ 81 (83)
T 1vq8_Z 2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSED 81 (83)
T ss_dssp GGGGTTCSCHHHHHHHHHHHHHHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHHHC--------
T ss_pred CCccccccchHHHHHHHHHHHhccccCcCCCCCCcceeccCCCeEECCCCCCEecCCEecccchHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 044880 90 ES 91 (91)
Q Consensus 90 ~~ 91 (91)
|.
T Consensus 82 ~~ 83 (83)
T 1vq8_Z 82 EE 83 (83)
T ss_dssp --
T ss_pred cC
Confidence 73
No 8
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=100.00 E-value=6e-44 Score=231.51 Aligned_cols=72 Identities=38% Similarity=0.792 Sum_probs=70.2
Q ss_pred eccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHHH
Q 044880 9 IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 80 (91)
Q Consensus 9 i~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~ 80 (91)
|+||||+|||++|||+|++||++||++|+|||||++.|+|+++|||+|++|+++||||||+|+||++.++++
T Consensus 1 i~Gk~G~RYG~slRK~vkkie~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~t~~~ 72 (73)
T 1ffk_W 1 PTGRFGPRYGLKIRVRVRDVEIKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTPETVAGKAVMK 72 (73)
T ss_pred CCcccccccChhHHHHHHHHHHhcccCccCCCCCCceeEEEEeEEEECCCCCcEEECCCccccccceEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999999999998775
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.74 E-value=9e-10 Score=66.79 Aligned_cols=34 Identities=29% Similarity=0.624 Sum_probs=31.6
Q ss_pred HHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCce
Q 044880 25 IKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKV 62 (91)
Q Consensus 25 v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~ 62 (91)
+.+||..+..+|.||.||.. .++|||+|.+||++
T Consensus 4 ~~eie~r~~~k~iCpkC~a~----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 4 FPEAEARIFKKYVCLRCGAT----NPWGAKKCRKCGYK 37 (51)
T ss_dssp CTTHHHHSSSEEECTTTCCE----ECTTCSSCSSSSSC
T ss_pred HHHHHHHHhCCccCCCCCCc----CCCCceecCCCCCc
Confidence 46899999999999999986 89999999999986
No 10
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.23 E-value=0.0033 Score=37.11 Aligned_cols=29 Identities=28% Similarity=0.714 Sum_probs=23.8
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
.-.||.||...+-.....-|.|.+||.+.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 44699999977666667899999999875
No 11
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=95.87 E-value=0.025 Score=35.02 Aligned_cols=47 Identities=11% Similarity=0.260 Sum_probs=30.8
Q ss_pred ccCCCCceeeEEe----------------eeeeeeeCCCCceEecccccccccHHHHHHHHHHHHHhhh
Q 044880 37 FCEFCGKYAVKRK----------------AVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 89 (91)
Q Consensus 37 ~CpfCGk~~VkR~----------------a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~~i~rl~e~~ 89 (91)
+||+||...+.+. .+=-|.|..||+.+.. ...+.-+..++..|+...
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~------~e~~~~~~~~~~~f~~~v 66 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN------KEESDAFMAQVKAFRASV 66 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC------HHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC------HHHHHHHHHHHHHHHHHH
Confidence 6999996532111 4467999999998764 344555666666666544
No 12
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=95.59 E-value=0.0056 Score=36.78 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=23.4
Q ss_pred hcccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 33 HSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
+....||.||...+--...+-|.|.+|+++.
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4567899999855322345799999999886
No 13
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=95.55 E-value=0.013 Score=38.15 Aligned_cols=44 Identities=20% Similarity=0.435 Sum_probs=31.5
Q ss_pred hhcccccCCCCce-e--eEE---eeeeeeeeCCCCceEecccccccccHH
Q 044880 32 QHSKYFCEFCGKY-A--VKR---KAVGIWGCKDCGKVKAGGAYTLNTASA 75 (91)
Q Consensus 32 q~~ky~CpfCGk~-~--VkR---~a~GIW~C~~Cg~~~AGGAy~~~T~~~ 75 (91)
....|.||||+.. + |+. ..+|.=.|+.|+..|.=-.-.++.|.=
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epiD 69 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVD 69 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCTTH
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcchh
Confidence 4577999999988 3 332 268999999999988764444444443
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=95.40 E-value=0.0073 Score=34.63 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=24.6
Q ss_pred cccccCCCCc-eeeEEeeeeeeeeCCCCceEec
Q 044880 34 SKYFCEFCGK-YAVKRKAVGIWGCKDCGKVKAG 65 (91)
Q Consensus 34 ~ky~CpfCGk-~~VkR~a~GIW~C~~Cg~~~AG 65 (91)
..+.||.||. +.+.-.+.|-+.|..||..+.-
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 3568999998 4444456799999999987753
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=95.26 E-value=0.0078 Score=36.20 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=26.3
Q ss_pred ccccCCCCcee-eEEeeeeeeeeCCCCceEecccc
Q 044880 35 KYFCEFCGKYA-VKRKAVGIWGCKDCGKVKAGGAY 68 (91)
Q Consensus 35 ky~CpfCGk~~-VkR~a~GIW~C~~Cg~~~AGGAy 68 (91)
...||.||... +.-.+.|.+.|..||.+++-...
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~i 45 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVI 45 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEEecccc
Confidence 34799999854 44457899999999999986543
No 16
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=94.94 E-value=0.0091 Score=38.83 Aligned_cols=51 Identities=24% Similarity=0.479 Sum_probs=31.6
Q ss_pred ccccCCCCce--eeEE-eeeeeeeeCCCCceEecccccccc-cHHHHHHHHHHHHHh
Q 044880 35 KYFCEFCGKY--AVKR-KAVGIWGCKDCGKVKAGGAYTLNT-ASAVTVRSTIRRLRE 87 (91)
Q Consensus 35 ky~CpfCGk~--~VkR-~a~GIW~C~~Cg~~~AGGAy~~~T-~~~~t~~~~i~rl~e 87 (91)
.+.||||+.. ++.= ...|+|+|..||. .|.+..+-. --+.++..|++.|.+
T Consensus 37 ~~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~--gGd~i~fv~~~~~~sf~eA~~~La~ 91 (103)
T 1d0q_A 37 FGLCPFHGEKTPSFSVSPEKQIFHCFGCGA--GGNAFTFLMDIEGIPFVEAAKRLAA 91 (103)
T ss_dssp EECCSSSCCSSCCEEEETTTTEEEETTTCC--EECHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCcEEEEcCCCEEEECCCCC--CCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 4689999864 3321 2468999999994 455554321 123446667776654
No 17
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=93.51 E-value=0.08 Score=34.34 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=21.0
Q ss_pred ccCCCCceeeEE----------------eeeeeeeeCCCCceEec
Q 044880 37 FCEFCGKYAVKR----------------KAVGIWGCKDCGKVKAG 65 (91)
Q Consensus 37 ~CpfCGk~~VkR----------------~a~GIW~C~~Cg~~~AG 65 (91)
.||+||+..+.. .++-.|.|..||+.+..
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 699999763211 13468999999998854
No 18
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=92.97 E-value=0.048 Score=39.13 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=21.7
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCce
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCGKV 62 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg~~ 62 (91)
-||-|.|..+ -...|.|.|.+|+..
T Consensus 44 ACp~CnKKV~-~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSVL-KYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCEE-EETTTEEEETTTTEE
T ss_pred hchhhCCEee-eCCCCeEECCCCCCC
Confidence 7999998776 367899999999987
No 19
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=92.95 E-value=0.052 Score=38.32 Aligned_cols=28 Identities=21% Similarity=0.657 Sum_probs=23.0
Q ss_pred ccCC--CCceeeEEeeeeeeeeCCCCceEec
Q 044880 37 FCEF--CGKYAVKRKAVGIWGCKDCGKVKAG 65 (91)
Q Consensus 37 ~Cpf--CGk~~VkR~a~GIW~C~~Cg~~~AG 65 (91)
-||. |.|..+. .+.|.|.|.+|+..+.-
T Consensus 45 aC~~~~CnKKv~~-~~~g~~~CekC~~~~~~ 74 (181)
T 1l1o_C 45 ACPTQDCNKKVID-QQNGLYRCEKCDTEFPN 74 (181)
T ss_dssp BCCSTTCCCBCEE-ETTTEEEETTTTEEESS
T ss_pred CCCchhcCCcccc-CCCCeEECCCCCCcCCC
Confidence 7999 9997553 67799999999988743
No 20
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=92.50 E-value=0.032 Score=32.73 Aligned_cols=32 Identities=31% Similarity=0.744 Sum_probs=21.6
Q ss_pred hcccccCCCCceeeEE--------e--eeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR--------~--a~GIW~C~~Cg~~~A 64 (91)
..+|.|+.||+.-..+ . +.--+.|..||+.|.
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 3578899998864211 1 334588999988885
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=92.33 E-value=0.087 Score=40.67 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=24.8
Q ss_pred hhcccccCCCCc---eeeEEeeeeeeeeCCCCceEe
Q 044880 32 QHSKYFCEFCGK---YAVKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 32 q~~ky~CpfCGk---~~VkR~a~GIW~C~~Cg~~~A 64 (91)
....+.||.||. ..|.....|--.|..||.++.
T Consensus 18 l~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp ----CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEE
T ss_pred cccCCcCCCCCCCCCceeEECCCCcEEeCCCCCCcc
Confidence 345678999996 346777899999999998876
No 22
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=92.16 E-value=0.049 Score=42.48 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=21.1
Q ss_pred cccCCCCce--e--eEEeeeeeeeeCCCCceEeccccc
Q 044880 36 YFCEFCGKY--A--VKRKAVGIWGCKDCGKVKAGGAYT 69 (91)
Q Consensus 36 y~CpfCGk~--~--VkR~a~GIW~C~~Cg~~~AGGAy~ 69 (91)
..||||+.. + |. ...|+|+|..||. .|.+..
T Consensus 35 ~~CPfh~ektpSf~V~-~~k~~~~CFgCg~--gGd~i~ 69 (407)
T 2au3_A 35 TNCPFHPDDTPSFYVS-PSKQIFKCFGCGV--GGDAIK 69 (407)
T ss_dssp ECCSSSCCSSCCEEEE-TTTTEEEETTTCC--EECHHH
T ss_pred eeCcCCCCCCCeEEEE-CCCCEEEECCCCC--CCCHHH
Confidence 379999854 2 33 3458999999994 344443
No 23
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=92.15 E-value=0.044 Score=29.55 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=18.2
Q ss_pred ccccCCCCceeeE-----E---e--eeeeeeeCCCCceEe
Q 044880 35 KYFCEFCGKYAVK-----R---K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 35 ky~CpfCGk~~Vk-----R---~--a~GIW~C~~Cg~~~A 64 (91)
+|.|+.||+.-.. + . +.-.+.|..|++.|.
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 4778888765311 1 1 223478888888774
No 24
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=92.01 E-value=0.033 Score=31.68 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=22.4
Q ss_pred hcccccCCCCcee-----eEEee--eeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYA-----VKRKA--VGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~-----VkR~a--~GIW~C~~Cg~~~A 64 (91)
..+|.|+.||+.- +.+.- ..-+.|..|++.|.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 3579999999853 22332 24589999998875
No 25
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=91.84 E-value=0.074 Score=38.47 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=18.4
Q ss_pred ccCCCCce-eeEEeeeeeeeeCCCCce
Q 044880 37 FCEFCGKY-AVKRKAVGIWGCKDCGKV 62 (91)
Q Consensus 37 ~CpfCGk~-~VkR~a~GIW~C~~Cg~~ 62 (91)
.||.||+. ...--..|-|+|.+||..
T Consensus 16 ~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred cCCCCCCCCCceEeCCCCeecccCCCc
Confidence 79999983 322123456999999975
No 26
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=91.80 E-value=0.056 Score=29.14 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=19.0
Q ss_pred cccccCCCCceeeEE--------e--eeeeeeeCCCCceEe
Q 044880 34 SKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR--------~--a~GIW~C~~Cg~~~A 64 (91)
.+|.|+.||+.-... . +.-.+.|..|++.|.
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 478888888753111 1 234588888888774
No 27
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=91.77 E-value=0.18 Score=33.84 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=23.7
Q ss_pred cccCCCCceeeEEe----eeeeeeeCCCCceEec
Q 044880 36 YFCEFCGKYAVKRK----AVGIWGCKDCGKVKAG 65 (91)
Q Consensus 36 y~CpfCGk~~VkR~----a~GIW~C~~Cg~~~AG 65 (91)
.+||.||....-.. ..++|.|..|++...-
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 58999999875443 3689999999987753
No 28
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=91.37 E-value=0.049 Score=30.32 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=22.2
Q ss_pred hcccccCCCCcee---------eEE---eeeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYA---------VKR---KAVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~---------VkR---~a~GIW~C~~Cg~~~A 64 (91)
..+|.|+.||+.- ++. .+...+.|..|++.|.
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 4578999999764 222 1335689999998875
No 29
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=90.95 E-value=0.042 Score=34.46 Aligned_cols=29 Identities=31% Similarity=0.730 Sum_probs=22.5
Q ss_pred hhcccccCCCCceeeEEeeeeeeeeCCCCc
Q 044880 32 QHSKYFCEFCGKYAVKRKAVGIWGCKDCGK 61 (91)
Q Consensus 32 q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~ 61 (91)
..-.|.|+.||...-......| +|+.||.
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~i-rCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAV-RCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTT-CCSSSCC
T ss_pred ceEEEECCCCCCcceeCCCCCc-cCCCCCc
Confidence 5788999999998533345556 8999997
No 30
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=90.50 E-value=0.08 Score=30.20 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=22.5
Q ss_pred hcccccCCCCceeeE-----E-----eeeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVK-----R-----KAVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~Vk-----R-----~a~GIW~C~~Cg~~~A 64 (91)
..+|.|++|++.-.. + ...-.+.|..|++.|.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 468999999986411 1 1234589999999875
No 31
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=90.45 E-value=0.081 Score=28.85 Aligned_cols=30 Identities=20% Similarity=0.575 Sum_probs=18.3
Q ss_pred ccccCCCCceeeE-----E---e--eeeeeeeCCCCceEe
Q 044880 35 KYFCEFCGKYAVK-----R---K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 35 ky~CpfCGk~~Vk-----R---~--a~GIW~C~~Cg~~~A 64 (91)
+|.|+.||+.-.. + . +.-.+.|..|++.|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 5778888865311 1 1 223478888888774
No 32
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=89.83 E-value=0.15 Score=32.82 Aligned_cols=21 Identities=33% Similarity=0.787 Sum_probs=18.2
Q ss_pred hcccccCCCCceeeEEeeeee
Q 044880 33 HSKYFCEFCGKYAVKRKAVGI 53 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a~GI 53 (91)
-.+.+||.||...+.|+++.+
T Consensus 28 ~~k~FCp~CGn~TL~Rvsvsv 48 (79)
T 2con_A 28 MNRVFCGHCGNKTLKKVSVTI 48 (79)
T ss_dssp SSCCSCSSSCCSCCEEEECBC
T ss_pred cccccccccCcccceEEEEEE
Confidence 367899999999999998765
No 33
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=89.80 E-value=0.051 Score=32.27 Aligned_cols=25 Identities=32% Similarity=1.007 Sum_probs=17.7
Q ss_pred ccccCCCCcee--eEEe--eeeeeeeCCC
Q 044880 35 KYFCEFCGKYA--VKRK--AVGIWGCKDC 59 (91)
Q Consensus 35 ky~CpfCGk~~--VkR~--a~GIW~C~~C 59 (91)
...|+|||+.. |.+. +-|+.-|..|
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGpgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGPSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECSSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCCCCCCEehHHH
Confidence 36799999875 5544 3467778877
No 34
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=89.76 E-value=0.16 Score=33.65 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=23.8
Q ss_pred cccCCCCceeeEEeee----eeeeeCCCCceEecc
Q 044880 36 YFCEFCGKYAVKRKAV----GIWGCKDCGKVKAGG 66 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~----GIW~C~~Cg~~~AGG 66 (91)
.+||.||....-+... -.|.|..|++.+.-.
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 4799999987555543 389999999987543
No 35
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=89.53 E-value=0.097 Score=32.60 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=22.5
Q ss_pred hcccccCCCCceeeEE--------e--eeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR--------~--a~GIW~C~~Cg~~~A 64 (91)
...|.|+.||+.-..+ . +.-.+.|..|++.|.
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeC
Confidence 3568999999874211 1 334689999999885
No 36
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=89.17 E-value=0.095 Score=29.63 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=22.1
Q ss_pred hcccccCCCCcee-----eEE---e--eeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYA-----VKR---K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~-----VkR---~--a~GIW~C~~Cg~~~A 64 (91)
..+|.|+.|++.- +++ . ..-.+.|..|++.|.
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 4679999999863 111 1 234589999999885
No 37
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=88.80 E-value=0.094 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=21.8
Q ss_pred hcccccCCCCcee---------eEEeee---eeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYA---------VKRKAV---GIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~---------VkR~a~---GIW~C~~Cg~~~A 64 (91)
..+|.|+.|++.- ++..-. -.+.|..|++.|.
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 4579999999864 111111 3689999998875
No 38
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=88.58 E-value=0.065 Score=33.68 Aligned_cols=25 Identities=32% Similarity=1.007 Sum_probs=18.1
Q ss_pred ccccCCCCcee--eEEe--eeeeeeeCCC
Q 044880 35 KYFCEFCGKYA--VKRK--AVGIWGCKDC 59 (91)
Q Consensus 35 ky~CpfCGk~~--VkR~--a~GIW~C~~C 59 (91)
...|+|||+.. |.+. +-|+.-|..|
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeC 46 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDEC 46 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHH
Confidence 35799999875 5544 3467888888
No 39
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=88.56 E-value=0.23 Score=36.88 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=25.6
Q ss_pred hcccccCCCCc---eeeEEeeeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGK---YAVKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk---~~VkR~a~GIW~C~~Cg~~~A 64 (91)
.....||.||. ..+.-...|-..|..||.++.
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 34558999998 246667889999999999875
No 40
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=87.92 E-value=0.14 Score=31.69 Aligned_cols=30 Identities=27% Similarity=0.688 Sum_probs=22.3
Q ss_pred hhcccccCCCCcee-eEEeeeeeeeeCCCCceE
Q 044880 32 QHSKYFCEFCGKYA-VKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 32 q~~ky~CpfCGk~~-VkR~a~GIW~C~~Cg~~~ 63 (91)
+...|.|..||.+. ++ ....| .|..||..+
T Consensus 18 ~~v~Y~C~~Cg~~~~l~-~~~~i-RC~~CG~RI 48 (63)
T 3h0g_L 18 ATMIYLCADCGARNTIQ-AKEVI-RCRECGHRV 48 (63)
T ss_dssp -CCCCBCSSSCCBCCCC-SSSCC-CCSSSCCCC
T ss_pred CCeEEECCCCCCeeecC-CCCce-ECCCCCcEE
Confidence 35789999999875 44 44556 999999654
No 41
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.89 E-value=0.086 Score=30.32 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=20.8
Q ss_pred hcccccCCCCceeeE-----E---ee-----eeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVK-----R---KA-----VGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~Vk-----R---~a-----~GIW~C~~Cg~~~A 64 (91)
..+|.|+.||+.-.. + .- .-.+.|..|++.|.
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhC
Confidence 457888888876411 1 11 24688888888775
No 42
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=87.72 E-value=0.25 Score=38.67 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=23.7
Q ss_pred ccCC--CCceeeEEeeeeeeeeCCCCceEecccc
Q 044880 37 FCEF--CGKYAVKRKAVGIWGCKDCGKVKAGGAY 68 (91)
Q Consensus 37 ~Cpf--CGk~~VkR~a~GIW~C~~Cg~~~AGGAy 68 (91)
-||. |+|..+. ...|.|.|.+|+..+.-.-|
T Consensus 310 aC~~~~C~kkv~~-~~~g~~~C~~C~~~~~~~~~ 342 (444)
T 4gop_C 310 ACASEGCNKKVNL-DHENNWRCEKCDRSYATPEY 342 (444)
T ss_dssp ECCSTTCCCBEEE-CTTSCEEETTTTEEESSCEE
T ss_pred cCCcccCCCcccc-CCCccEECCCCCCcCccccE
Confidence 7999 9986554 56799999999988644333
No 43
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=87.70 E-value=0.18 Score=28.74 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=22.9
Q ss_pred hhcccccCCCCceeeE-----E---e--eeeeeeeCCCCceEec
Q 044880 32 QHSKYFCEFCGKYAVK-----R---K--AVGIWGCKDCGKVKAG 65 (91)
Q Consensus 32 q~~ky~CpfCGk~~Vk-----R---~--a~GIW~C~~Cg~~~AG 65 (91)
...+|.|+.|++.-.. + . +.--+.|..|++.|.-
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 3567999999986421 1 1 2234899999998853
No 44
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.48 E-value=0.13 Score=29.56 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=21.1
Q ss_pred hcccccCCCCceee---------EEeee-----eeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAV---------KRKAV-----GIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~V---------kR~a~-----GIW~C~~Cg~~~A 64 (91)
..+|.|+.|++.-. +.... ..+.|..|++.|.
T Consensus 13 ~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~ 58 (86)
T 1x6h_A 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58 (86)
T ss_dssp CCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEES
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhC
Confidence 45788999987641 11111 3588999988875
No 45
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=87.12 E-value=0.2 Score=29.43 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=7.6
Q ss_pred eeeeCCCCceEe
Q 044880 53 IWGCKDCGKVKA 64 (91)
Q Consensus 53 IW~C~~Cg~~~A 64 (91)
-+.|..|++.|.
T Consensus 31 ~~~C~~C~k~f~ 42 (88)
T 1llm_C 31 PFACDICGRKFA 42 (88)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 366777766664
No 46
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=86.78 E-value=0.22 Score=28.55 Aligned_cols=32 Identities=28% Similarity=0.701 Sum_probs=22.4
Q ss_pred hcccccCCCCceeeE-----E---e--eeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVK-----R---K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~Vk-----R---~--a~GIW~C~~Cg~~~A 64 (91)
..+|.|+.|++.-.. + . ..-.+.|..|++.|.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 468999999986421 1 1 234589999999885
No 47
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=86.72 E-value=0.21 Score=28.30 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=23.3
Q ss_pred hhcccccCCCCceeeEEe----------eeeeeeeCCCCceEe
Q 044880 32 QHSKYFCEFCGKYAVKRK----------AVGIWGCKDCGKVKA 64 (91)
Q Consensus 32 q~~ky~CpfCGk~~VkR~----------a~GIW~C~~Cg~~~A 64 (91)
...+|.|+.|++.-.... +...+.|..|++.|.
T Consensus 26 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68 (82)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEES
T ss_pred CCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhC
Confidence 346799999998642111 234589999999885
No 48
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=86.70 E-value=0.22 Score=28.80 Aligned_cols=32 Identities=19% Similarity=0.523 Sum_probs=22.8
Q ss_pred hcccccCCCCceeeEE----------eeeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVKR----------KAVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR----------~a~GIW~C~~Cg~~~A 64 (91)
..+|.|++|++.-... .+...+.|..|++.|.
T Consensus 32 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73 (90)
T ss_dssp CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence 4679999999864211 1334589999999885
No 49
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=86.32 E-value=0.23 Score=34.17 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=23.8
Q ss_pred cccccCCCCceeeEEe----eeeeeeeCCCCceEec
Q 044880 34 SKYFCEFCGKYAVKRK----AVGIWGCKDCGKVKAG 65 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~----a~GIW~C~~Cg~~~AG 65 (91)
.--+||.||....-+. ..-+|.|+.|++...-
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~ 58 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 58 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEc
Confidence 3468999999864443 2458999999987654
No 50
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=85.91 E-value=0.28 Score=22.13 Aligned_cols=10 Identities=30% Similarity=0.643 Sum_probs=6.4
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 2m0e_A 2 EHKCPHCDKK 11 (29)
T ss_dssp CCCCSSCCCC
T ss_pred CCcCCCCCcc
Confidence 5667777654
No 51
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=85.71 E-value=0.19 Score=38.43 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.5
Q ss_pred hcccccCCCCce---eeEEeeeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKY---AVKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~---~VkR~a~GIW~C~~Cg~~~A 64 (91)
.....||.||.. .+...+.|-..|..||.++.
T Consensus 19 ~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred cCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 345689999985 56667889999999998663
No 52
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=85.30 E-value=0.67 Score=29.90 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.4
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCceEeccccccc
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN 71 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~ 71 (91)
..||.|+.+... ..+..+|..|++-|.-.|+=|+
T Consensus 3 ~~CP~C~~~l~~--~~~~~~C~~C~~~~~~~afCPe 36 (81)
T 2jrp_A 3 ITCPVCHHALER--NGDTAHCETCAKDFSLQALCPD 36 (81)
T ss_dssp CCCSSSCSCCEE--CSSEEECTTTCCEEEEEEECSS
T ss_pred CCCCCCCCcccc--CCCceECccccccCCCcccCcc
Confidence 468888887554 3457788888888888887764
No 53
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=85.20 E-value=1.1 Score=26.00 Aligned_cols=31 Identities=26% Similarity=0.600 Sum_probs=21.9
Q ss_pred cccccCCCCceeeE------Ee----eeeeeeeCCCCceEe
Q 044880 34 SKYFCEFCGKYAVK------RK----AVGIWGCKDCGKVKA 64 (91)
Q Consensus 34 ~ky~CpfCGk~~Vk------R~----a~GIW~C~~Cg~~~A 64 (91)
....||.||...+. |. .+=++.|.+||..+.
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 35689999986532 11 245799999998864
No 54
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=85.14 E-value=0.12 Score=28.12 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=18.5
Q ss_pred hcccccCCCCcee---------eEEe--eeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYA---------VKRK--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~---------VkR~--a~GIW~C~~Cg~~~A 64 (91)
..+|.|+.|++.- +++. ..-.+.|..|++.|+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3567777777653 1111 223467777777665
No 55
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=84.78 E-value=0.2 Score=31.02 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=24.7
Q ss_pred HHhhcccccCCCCcee-eE---------EeeeeeeeeCCCCceEe
Q 044880 30 VSQHSKYFCEFCGKYA-VK---------RKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 30 ~~q~~ky~CpfCGk~~-Vk---------R~a~GIW~C~~Cg~~~A 64 (91)
.....+|.|+.||+.- .. ..+.--..|..|++.|.
T Consensus 29 ~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 29 IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73 (96)
T ss_dssp HHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCS
T ss_pred hcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeC
Confidence 4567889999999865 21 11234578999999875
No 56
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=84.39 E-value=0.32 Score=22.14 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=5.8
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 4666666653
No 57
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=83.99 E-value=0.37 Score=21.83 Aligned_cols=10 Identities=30% Similarity=1.046 Sum_probs=6.7
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 1ard_A 2 SFVCEVCTRA 11 (29)
T ss_dssp CCBCTTTCCB
T ss_pred CeECCCCCcc
Confidence 5677777764
No 58
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.97 E-value=0.37 Score=29.12 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=23.2
Q ss_pred hcccccCCCCceeeEE--------e--eeeeeeeCCCCceEec
Q 044880 33 HSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKAG 65 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR--------~--a~GIW~C~~Cg~~~AG 65 (91)
..+|.|++|++.-... . ....+.|..|++.|.-
T Consensus 35 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 77 (110)
T 2csh_A 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW 77 (110)
T ss_dssp CCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred CcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence 3679999999864211 1 3346899999998853
No 59
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=83.78 E-value=0.34 Score=22.08 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=6.6
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 1rik_A 2 KFACPECPKR 11 (29)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCCCch
Confidence 5677777664
No 60
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=83.65 E-value=0.25 Score=22.82 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=6.9
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~k~ 12 (27)
T 2kvg_A 2 APYRCPLCRAG 12 (27)
T ss_dssp CTEEETTTTEE
T ss_pred cCcCCCCCCcc
Confidence 35677777654
No 61
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=84.13 E-value=0.22 Score=22.55 Aligned_cols=11 Identities=55% Similarity=1.102 Sum_probs=7.6
Q ss_pred ccccCCCCcee
Q 044880 35 KYFCEFCGKYA 45 (91)
Q Consensus 35 ky~CpfCGk~~ 45 (91)
+|.|+.||+.-
T Consensus 2 p~~C~~C~k~f 12 (26)
T 2lvu_A 2 PYVCERCGKRF 12 (26)
Confidence 57788887653
No 62
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=83.50 E-value=0.41 Score=21.70 Aligned_cols=10 Identities=30% Similarity=0.972 Sum_probs=6.8
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1klr_A 2 TYQCQYCEFR 11 (30)
T ss_dssp CCCCSSSSCC
T ss_pred CccCCCCCCc
Confidence 5677777764
No 63
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=83.49 E-value=0.55 Score=34.13 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=22.4
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
.-.||.||...+=..-..=|+|.+|+.++
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLTL 141 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCCB
T ss_pred cccCCccCCCccccCccCCCccCCceeEE
Confidence 35799999765444555679999999987
No 64
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=83.36 E-value=0.4 Score=21.79 Aligned_cols=11 Identities=45% Similarity=1.074 Sum_probs=7.1
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~k~ 12 (28)
T 2kvf_A 2 RPYSCSVCGKR 12 (28)
T ss_dssp CSEECSSSCCE
T ss_pred cCccCCCCCcc
Confidence 35777777764
No 65
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.28 E-value=0.4 Score=28.05 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=21.3
Q ss_pred hcccccCCCCceeeEE--------eee----eeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVKR--------KAV----GIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR--------~a~----GIW~C~~Cg~~~A 64 (91)
..+|.|+.|++.-... .-. ..+.|..|++.|.
T Consensus 33 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~ 76 (95)
T 2yt9_A 33 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76 (95)
T ss_dssp SCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence 3578999999764211 112 4688999988774
No 66
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.28 E-value=0.39 Score=28.11 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=19.8
Q ss_pred cccccCCCCceeeEE----------eeeeeeeeCCCCceEe
Q 044880 34 SKYFCEFCGKYAVKR----------KAVGIWGCKDCGKVKA 64 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR----------~a~GIW~C~~Cg~~~A 64 (91)
.+|.|+.|++.-... .....+.|..|++.|.
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 468888888754211 1334578888888775
No 67
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=83.27 E-value=0.43 Score=21.41 Aligned_cols=10 Identities=30% Similarity=0.932 Sum_probs=6.0
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 1 ~~~C~~C~k~ 10 (27)
T 1znf_A 1 XYKCGLCERS 10 (27)
T ss_dssp -CBCSSSCCB
T ss_pred CccCCCCCCc
Confidence 3667777764
No 68
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=83.24 E-value=0.35 Score=29.37 Aligned_cols=31 Identities=19% Similarity=0.517 Sum_probs=17.1
Q ss_pred cccccCCCCcee---------eE----EeeeeeeeeCCCCceEe
Q 044880 34 SKYFCEFCGKYA---------VK----RKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 34 ~ky~CpfCGk~~---------Vk----R~a~GIW~C~~Cg~~~A 64 (91)
.+|.|+.|++.- +. -.....+.|..|++.|.
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~ 77 (124)
T 2dlq_A 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFR 77 (124)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEES
T ss_pred CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccC
Confidence 457777777642 11 12334567777776664
No 69
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=83.07 E-value=0.45 Score=21.80 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=7.4
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1paa_A 2 AYACGLCNRA 11 (30)
T ss_dssp CSBCTTTCCB
T ss_pred CcCCcccCcc
Confidence 5778888765
No 70
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=82.99 E-value=0.43 Score=23.25 Aligned_cols=13 Identities=15% Similarity=0.421 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 9 ~k~~~C~~C~k~f 21 (37)
T 1p7a_A 9 IKPFQCPDCDRSF 21 (37)
T ss_dssp SSSBCCTTTCCCB
T ss_pred CCCccCCCCCccc
Confidence 4579999998753
No 71
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=82.99 E-value=0.39 Score=21.67 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=4.7
Q ss_pred ccccCCCCc
Q 044880 35 KYFCEFCGK 43 (91)
Q Consensus 35 ky~CpfCGk 43 (91)
+|.|+.||+
T Consensus 2 ~~~C~~C~k 10 (29)
T 2m0f_A 2 PLKCRECGK 10 (29)
T ss_dssp CEECTTTSC
T ss_pred CccCCCCCC
Confidence 355555554
No 72
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=82.89 E-value=0.24 Score=30.98 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=24.0
Q ss_pred HhhcccccCCCCceeeEEe--------eeeeeeeCCCCceEe
Q 044880 31 SQHSKYFCEFCGKYAVKRK--------AVGIWGCKDCGKVKA 64 (91)
Q Consensus 31 ~q~~ky~CpfCGk~~VkR~--------a~GIW~C~~Cg~~~A 64 (91)
....+|.|+.||+.-.... -..-+.|..|++.|+
T Consensus 70 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFT 111 (129)
T ss_dssp HHHCSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCS
T ss_pred CCCCCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccC
Confidence 4467899999998642111 034589999999875
No 73
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=82.83 E-value=0.45 Score=22.90 Aligned_cols=10 Identities=30% Similarity=0.746 Sum_probs=8.1
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 6889999875
No 74
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=82.13 E-value=0.44 Score=26.77 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=20.3
Q ss_pred hcccccCC--CCceeeE-----E---e--eeeeeeeCCCCceEe
Q 044880 33 HSKYFCEF--CGKYAVK-----R---K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~Cpf--CGk~~Vk-----R---~--a~GIW~C~~Cg~~~A 64 (91)
..+|.|++ ||+.-.. + . +..-+.|..|++.|.
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhC
Confidence 45688875 8876311 1 1 234488999988875
No 75
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=81.66 E-value=0.96 Score=30.60 Aligned_cols=25 Identities=32% Similarity=0.772 Sum_probs=18.1
Q ss_pred ccCCCCceeeEEeeee----eeeeCCCCc
Q 044880 37 FCEFCGKYAVKRKAVG----IWGCKDCGK 61 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~G----IW~C~~Cg~ 61 (91)
.||.||....-+...| .+.|..|+.
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cCchhCCccccccccCCCCcceECCCCCC
Confidence 6999998875555333 567999983
No 76
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=81.55 E-value=0.37 Score=31.63 Aligned_cols=32 Identities=28% Similarity=0.572 Sum_probs=21.7
Q ss_pred hcccccCCCCceeeEE--------e--eeeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR--------~--a~GIW~C~~Cg~~~A 64 (91)
..+|.|+.||+.-... . +.--+.|..|++.|.
T Consensus 48 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 89 (133)
T 2lt7_A 48 EKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFI 89 (133)
T ss_dssp CSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEES
T ss_pred CCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcC
Confidence 4578999999764221 1 234588999998875
No 77
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=82.29 E-value=0.3 Score=22.47 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=7.8
Q ss_pred ccccCCCCcee
Q 044880 35 KYFCEFCGKYA 45 (91)
Q Consensus 35 ky~CpfCGk~~ 45 (91)
+|.|+.||+.-
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2lvt_A 2 PCQCVMCGKAF 12 (29)
Confidence 57788887653
No 78
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=81.25 E-value=0.51 Score=21.33 Aligned_cols=11 Identities=36% Similarity=1.298 Sum_probs=6.9
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~~~ 12 (30)
T 2m0d_A 2 KPYQCDYCGRS 12 (30)
T ss_dssp CCEECTTTCCE
T ss_pred cCccCCCCCcc
Confidence 35667777654
No 79
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.69 E-value=0.12 Score=28.70 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=22.3
Q ss_pred hcccccCCCCceeeEEee---eeeeeeCCCCceEec
Q 044880 33 HSKYFCEFCGKYAVKRKA---VGIWGCKDCGKVKAG 65 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a---~GIW~C~~Cg~~~AG 65 (91)
..+|.|+.||+.-..+.. ...+.|..|++.|.-
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQ 51 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSC
T ss_pred CCCeeCCcccchhCCHHHhCcCCCCCCCCCChhhcC
Confidence 357999999986422111 456889889887754
No 80
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=80.27 E-value=0.63 Score=22.58 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=7.0
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
+|.|+.||+.
T Consensus 2 p~~C~~C~k~ 11 (33)
T 1rim_A 2 KFACPECPKR 11 (33)
T ss_dssp CCCCSSSCCC
T ss_pred cccCCCCCch
Confidence 5777777764
No 81
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.96 E-value=0.58 Score=22.67 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=8.4
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
..+|.|+.||+.
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2els_A 7 GKIFTCEYCNKV 18 (36)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCEECCCCCce
Confidence 356788888765
No 82
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.77 E-value=0.68 Score=22.24 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=9.0
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
..+|.|+.||+.
T Consensus 7 ~~~~~C~~C~k~ 18 (36)
T 2elr_A 7 GKTHLCDMCGKK 18 (36)
T ss_dssp CSSCBCTTTCCB
T ss_pred CCCeecCcCCCC
Confidence 357888888875
No 83
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.75 E-value=0.61 Score=22.41 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=8.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elt_A 7 GKPYKCPQCSYAS 19 (36)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCCCCCCCCccc
Confidence 3568888887653
No 84
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=79.63 E-value=0.6 Score=22.23 Aligned_cols=12 Identities=42% Similarity=0.789 Sum_probs=8.4
Q ss_pred cccccCCCCcee
Q 044880 34 SKYFCEFCGKYA 45 (91)
Q Consensus 34 ~ky~CpfCGk~~ 45 (91)
.+|.|+.||+.-
T Consensus 6 k~~~C~~C~k~f 17 (35)
T 2elx_A 6 SGYVCALCLKKF 17 (35)
T ss_dssp CSEECSSSCCEE
T ss_pred CCeECCCCcchh
Confidence 467888887653
No 85
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.34 E-value=0.64 Score=22.66 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=7.7
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elp_A 8 RAMKCPYCDFY 18 (37)
T ss_dssp CCEECSSSSCE
T ss_pred CCeECCCCChh
Confidence 46778777764
No 86
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=80.59 E-value=0.38 Score=21.98 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=8.4
Q ss_pred cccccCCCCcee
Q 044880 34 SKYFCEFCGKYA 45 (91)
Q Consensus 34 ~ky~CpfCGk~~ 45 (91)
.+|.|+.||+.-
T Consensus 2 k~~~C~~C~k~f 13 (30)
T 2lvr_A 2 KPYVCIHCQRQF 13 (30)
Confidence 367888888753
No 87
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=78.84 E-value=0.67 Score=29.60 Aligned_cols=32 Identities=19% Similarity=0.535 Sum_probs=19.8
Q ss_pred hcccccCCCCcee---------eEEee-----eeeeeeCCCCceEe
Q 044880 33 HSKYFCEFCGKYA---------VKRKA-----VGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~CpfCGk~~---------VkR~a-----~GIW~C~~Cg~~~A 64 (91)
..+|.|+.||+.- +++.- .--..|..|++.|.
T Consensus 16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~ 61 (102)
T 2ghf_A 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61 (102)
T ss_dssp CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEES
T ss_pred CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccC
Confidence 3568888888764 12111 12478888888775
No 88
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=78.35 E-value=0.74 Score=22.03 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=8.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 5 ~k~~~C~~C~k~f 17 (35)
T 1srk_A 5 KRPFVCRICLSAF 17 (35)
T ss_dssp CSCEECSSSCCEE
T ss_pred CcCeeCCCCCccc
Confidence 3568888887753
No 89
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.24 E-value=0.69 Score=22.38 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elv_A 7 GLLYDCHICERKF 19 (36)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCcc
Confidence 3578888888753
No 90
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=77.96 E-value=0.73 Score=30.46 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=4.8
Q ss_pred eeeCCCCceE
Q 044880 54 WGCKDCGKVK 63 (91)
Q Consensus 54 W~C~~Cg~~~ 63 (91)
+.|..|++.|
T Consensus 134 ~~C~~C~~~f 143 (190)
T 2i13_A 134 YKCPECGKSF 143 (190)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCccc
Confidence 4455554444
No 91
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.64 E-value=0.77 Score=22.19 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=8.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elq_A 7 GKPFKCSLCEYAT 19 (36)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCccCCCCCchh
Confidence 3568888887653
No 92
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.39 E-value=0.75 Score=22.72 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=8.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 7 ~k~~~C~~C~k~f 19 (37)
T 2elm_A 7 GHLYYCSQCHYSS 19 (37)
T ss_dssp SCEEECSSSSCEE
T ss_pred CcCeECCCCCccc
Confidence 3568888887653
No 93
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.95 E-value=0.62 Score=22.63 Aligned_cols=12 Identities=33% Similarity=0.739 Sum_probs=8.4
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
..+|.|+.||+.
T Consensus 7 ~k~~~C~~C~k~ 18 (37)
T 2elo_A 7 GRSYSCPVCEKS 18 (37)
T ss_dssp CCCCEETTTTEE
T ss_pred CCCcCCCCCCCc
Confidence 356888888764
No 94
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=76.42 E-value=1.5 Score=27.39 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=35.5
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCceEeccccc--ccccHHHHHHHHHHHHHhh
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYT--LNTASAVTVRSTIRRLREQ 88 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~--~~T~~~~t~~~~i~rl~e~ 88 (91)
.-|| ||...+-+...--=+|. ||+++-=.-=. ..+..+..+..++++|.+.
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lqa~ 57 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQEE 57 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHSSC
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHHhh
Confidence 5699 99987665554445797 99887644322 2467788888888887654
No 95
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=74.59 E-value=1.1 Score=22.31 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2ytb_A 9 EKPYRCDQCGKAF 21 (42)
T ss_dssp CCSBCCTTTTCCB
T ss_pred CCCeeCCCccchh
Confidence 4578999998753
No 96
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=74.41 E-value=0.75 Score=24.44 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 6 ekp~~C~~CgK~F 18 (36)
T 1fv5_A 6 PARFMCLPCGIAF 18 (36)
T ss_dssp CCCCEETTTTEEC
T ss_pred ccCeECCCCCCcc
Confidence 5688999998753
No 97
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=74.39 E-value=1.1 Score=23.38 Aligned_cols=11 Identities=9% Similarity=-0.004 Sum_probs=9.0
Q ss_pred hcccccCCCCc
Q 044880 33 HSKYFCEFCGK 43 (91)
Q Consensus 33 ~~ky~CpfCGk 43 (91)
..+|.|+.|||
T Consensus 38 ~k~~~C~~C~k 48 (48)
T 2epr_A 38 EKPYSSGPSSG 48 (48)
T ss_dssp CCCCCSCCCCC
T ss_pred CCCccCCCCCC
Confidence 35799999986
No 98
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=74.31 E-value=0.66 Score=27.69 Aligned_cols=31 Identities=26% Similarity=0.606 Sum_probs=20.7
Q ss_pred cccccCCCCceeeEE--------e--eeeeeeeCCCCceEe
Q 044880 34 SKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR--------~--a~GIW~C~~Cg~~~A 64 (91)
.+|.|+.|++.-... . ....+.|..|++.|.
T Consensus 44 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 84 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84 (106)
T ss_dssp CCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred CCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCccc
Confidence 568999998764211 1 234588999988774
No 99
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=74.07 E-value=1.7 Score=30.06 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=21.6
Q ss_pred hcccccCC--CCceeeEEeeeeeeeeCCCCceEe
Q 044880 33 HSKYFCEF--CGKYAVKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 33 ~~ky~Cpf--CGk~~VkR~a~GIW~C~~Cg~~~A 64 (91)
+.+-.||. ||.-.+=-.-..-|.|.+|+.++.
T Consensus 116 ~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 116 KLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYK 149 (152)
T ss_dssp CCSCBCCSTTSCSSSBEEECSSCEEESSSSSCCE
T ss_pred ECcCcCCCccCCCceEecccCCCcccCCCceEEE
Confidence 34557999 998543322334699999998763
No 100
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.90 E-value=1.2 Score=22.26 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2eos_A 9 EKPYPCEICGTRF 21 (42)
T ss_dssp SCCBCCSSSCCCB
T ss_pred CCCEECCCCCCcc
Confidence 4579999998753
No 101
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=73.47 E-value=1.2 Score=25.46 Aligned_cols=31 Identities=26% Similarity=0.743 Sum_probs=20.4
Q ss_pred cccccCC--CCceeeE-----E---e--eeeeeeeCCCCceEe
Q 044880 34 SKYFCEF--CGKYAVK-----R---K--AVGIWGCKDCGKVKA 64 (91)
Q Consensus 34 ~ky~Cpf--CGk~~Vk-----R---~--a~GIW~C~~Cg~~~A 64 (91)
.+|.|++ |++.-.. + . +...+.|..|++.|.
T Consensus 34 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76 (89)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence 5688975 9876411 1 1 234588999998875
No 102
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=73.42 E-value=3.1 Score=27.93 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=27.5
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCCCceEeccccccc
Q 044880 34 SKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN 71 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~ 71 (91)
..-.||.|+.+... . .|.++|..|..-|.==|+-|+
T Consensus 31 M~~~CP~Cq~eL~~-~-g~~~hC~~C~~~f~~~a~CPd 66 (101)
T 2jne_A 31 MELHCPQCQHVLDQ-D-NGHARCRSCGEFIEMKALCPD 66 (101)
T ss_dssp CCCBCSSSCSBEEE-E-TTEEEETTTCCEEEEEEECTT
T ss_pred ccccCccCCCccee-c-CCEEECccccchhhccccCcc
Confidence 34689999998654 3 468899999998877666664
No 103
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=73.21 E-value=1.2 Score=22.08 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 4 ~k~~~C~~C~k~f 16 (39)
T 1njq_A 4 PRSYTCSFCKREF 16 (39)
T ss_dssp SSSEECTTTCCEE
T ss_pred CCceECCCCCccc
Confidence 3568888888753
No 104
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.65 E-value=1.3 Score=22.61 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (44)
T 2epv_A 10 EKPYECNECGKAF 22 (44)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCccc
Confidence 3578888888753
No 105
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.52 E-value=1.4 Score=22.54 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2enf_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CcCeECCCCCccc
Confidence 4578999998753
No 106
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.12 E-value=1.3 Score=22.61 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|++||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq1_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp SCCCCCTTTTCCC
T ss_pred CCCeECCcCChhh
Confidence 4679999999753
No 107
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.05 E-value=1.4 Score=21.92 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (42)
T 2yte_A 8 EKPYSCAECKETF 20 (42)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeECCCCCCcc
Confidence 4578999998753
No 108
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.79 E-value=1.3 Score=22.37 Aligned_cols=13 Identities=15% Similarity=0.559 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2yu5_A 10 ENPFKCSKCDRVF 22 (44)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCchh
Confidence 3578888888753
No 109
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=71.54 E-value=1.4 Score=21.88 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=8.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 9 ~~~~~C~~C~k~f 21 (42)
T 2epc_A 9 ETPYLCGQCGKSF 21 (42)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCeECCCCCccc
Confidence 3568888887653
No 110
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.46 E-value=1.4 Score=21.91 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (41)
T 2ept_A 8 QRVYECQECGKSF 20 (41)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCCc
Confidence 3578888888753
No 111
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=71.43 E-value=3.6 Score=22.26 Aligned_cols=27 Identities=30% Similarity=0.833 Sum_probs=17.8
Q ss_pred ccCCCCcee--eEEe-eeeeeeeCCCCceE
Q 044880 37 FCEFCGKYA--VKRK-AVGIWGCKDCGKVK 63 (91)
Q Consensus 37 ~CpfCGk~~--VkR~-a~GIW~C~~Cg~~~ 63 (91)
.||.|+.+. +.+. ..=+=+|..||..-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 599999874 3332 33344799998754
No 112
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=71.37 E-value=1.5 Score=22.40 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2yti_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4579999999753
No 113
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=71.24 E-value=1.4 Score=22.05 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2en7_A 10 MKPYVCNECGKAF 22 (44)
T ss_dssp SSSSCCTTTCCCC
T ss_pred CcCeECCCCCCcc
Confidence 4579999998753
No 114
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=71.09 E-value=2.2 Score=25.56 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=7.0
Q ss_pred eeeeCCCCceEe
Q 044880 53 IWGCKDCGKVKA 64 (91)
Q Consensus 53 IW~C~~Cg~~~A 64 (91)
.+.|..|++.|.
T Consensus 66 ~~~C~~C~~~f~ 77 (119)
T 2jp9_A 66 PFQCKTCQRKFS 77 (119)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCccCchhC
Confidence 456666666553
No 115
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.91 E-value=1.4 Score=22.11 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2eof_A 10 EKPYECNECQKAF 22 (44)
T ss_dssp CCSEECTTTCCEE
T ss_pred CCCeECCCCCccc
Confidence 3568888888753
No 116
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.82 E-value=1.5 Score=22.39 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoh_A 10 KKPYECKECRKTF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCCcCchh
Confidence 4579999999753
No 117
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.72 E-value=1.6 Score=22.37 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emz_A 10 ERPFKCNECGKGF 22 (46)
T ss_dssp CCSCCCSSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 4578999998753
No 118
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.71 E-value=1.6 Score=22.43 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eon_A 10 EKPYKCQVCGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CcccCCCCCCccc
Confidence 4579999999763
No 119
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=70.62 E-value=1.2 Score=23.47 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=14.7
Q ss_pred cccCchhhHHHHHHHHH
Q 044880 15 TRYGASLRKQIKKMEVS 31 (91)
Q Consensus 15 ~RYG~slRK~v~kie~~ 31 (91)
.|||+-||+|-.+.+.+
T Consensus 9 ~rYGReLRRMSDEF~~s 25 (27)
T 2bzw_B 9 QRYGRELRRMSDEFEGS 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHhHHHHhh
Confidence 58999999999988765
No 120
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.59 E-value=1.5 Score=22.37 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~F 22 (46)
T 2emi_A 10 ERHYECSECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCCCCCCCCccc
Confidence 3578899998753
No 121
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.59 E-value=1.4 Score=21.91 Aligned_cols=13 Identities=38% Similarity=0.792 Sum_probs=8.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2en2_A 9 EKPYKCETCGARF 21 (42)
T ss_dssp SCSEECTTTCCEE
T ss_pred CCCEeCCCcChhh
Confidence 3568888887653
No 122
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=70.55 E-value=1.5 Score=21.82 Aligned_cols=13 Identities=38% Similarity=0.748 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (42)
T 2el5_A 8 ENPYECSECGKAF 20 (42)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCccCCCcChhh
Confidence 3578888888753
No 123
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.29 E-value=1.5 Score=22.41 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2ytp_A 10 ERHYECSECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCcCCccc
Confidence 4578899988764
No 124
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=70.23 E-value=1.4 Score=22.58 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emj_A 10 EKPFECAECGKSF 22 (46)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCEECCCCCccc
Confidence 3568888888753
No 125
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=70.14 E-value=1.5 Score=22.31 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2en3_A 10 EKPFQCKECGMNF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCcccChhh
Confidence 3568888888753
No 126
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.98 E-value=1.6 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytf_A 10 EKPFECSECQKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCcCCCCCCccc
Confidence 4578888888753
No 127
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=69.97 E-value=0.62 Score=28.12 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=21.3
Q ss_pred cccccCCCCceeeE---------EeeeeeeeeCCCCceEe
Q 044880 34 SKYFCEFCGKYAVK---------RKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 34 ~ky~CpfCGk~~Vk---------R~a~GIW~C~~Cg~~~A 64 (91)
.+|.|+.|++.-.. -.....+.|..|++.|.
T Consensus 41 ~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~ 80 (107)
T 1wjp_A 41 NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFK 80 (107)
T ss_dssp HSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECS
T ss_pred CCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhC
Confidence 57999999975411 11234588999998875
No 128
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.92 E-value=1.7 Score=22.07 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eov_A 10 EKPYKCSDCGKSF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CCCccCCccChhh
Confidence 3579999998753
No 129
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.88 E-value=1.7 Score=22.08 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep1_A 10 EKPYECSDCGKSF 22 (46)
T ss_dssp CCSSCCSSSCCCC
T ss_pred CCCcCCCCCCchh
Confidence 4579999998763
No 130
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.77 E-value=1.6 Score=22.33 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em4_A 10 QRPYECIECGKAF 22 (46)
T ss_dssp SSSEECSSSCCEE
T ss_pred CcCcCCCCCCCcc
Confidence 3578888888753
No 131
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.74 E-value=1.7 Score=22.17 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq2_A 10 GKPYQCNECGKAF 22 (46)
T ss_dssp SCSSSCCSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 4579999999863
No 132
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=69.53 E-value=2.5 Score=32.43 Aligned_cols=37 Identities=24% Similarity=0.620 Sum_probs=26.3
Q ss_pred hcccccCCCCceeeEEe----eeeeeeeCCCCc-------------eEeccccc
Q 044880 33 HSKYFCEFCGKYAVKRK----AVGIWGCKDCGK-------------VKAGGAYT 69 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~----a~GIW~C~~Cg~-------------~~AGGAy~ 69 (91)
...-.||-||...+..- .|.-..|..|++ ++++|||.
T Consensus 32 ~~n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~ 85 (257)
T 4esj_A 32 YRQSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYA 85 (257)
T ss_dssp HHHCCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHH
T ss_pred HHCCcCCCCCChhhhhccCCCcccccccCCcchhheeccccCccCccccCchHH
Confidence 34457999999765322 456688999975 67888884
No 133
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.46 E-value=1.6 Score=22.30 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoy_A 10 EKCFKCNKCEKTF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCEECcCCCCcC
Confidence 3578899988753
No 134
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.39 E-value=1.5 Score=22.25 Aligned_cols=13 Identities=38% Similarity=0.879 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yts_A 10 EKPYICNECGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCEECCCCChhh
Confidence 4578888888753
No 135
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.33 E-value=1.6 Score=22.18 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eow_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCCEECTTSCCEE
T ss_pred CCCeeccccCChh
Confidence 3568888888753
No 136
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.33 E-value=1.6 Score=22.28 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yto_A 10 EKPYKCSDCGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCEECcccCCcc
Confidence 3578888888753
No 137
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.31 E-value=1.7 Score=22.16 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emg_A 10 ENPFICSECGKVF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCEECCccCccc
Confidence 3579999999753
No 138
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.28 E-value=1.8 Score=22.13 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yth_A 10 EKPFQCEECGKRF 22 (46)
T ss_dssp SSSBCCSSSCCCB
T ss_pred CcCCCCCCCCccc
Confidence 4579999999763
No 139
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.20 E-value=1.6 Score=22.03 Aligned_cols=13 Identities=23% Similarity=0.554 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2emb_A 10 RKRYECSKCQATF 22 (44)
T ss_dssp CSSEECTTTCCEE
T ss_pred CCCeECCCCCCcc
Confidence 3568888888753
No 140
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.80 E-value=1.7 Score=22.17 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2enh_A 10 EKPYECDVCRKAF 22 (46)
T ss_dssp SSSCBCTTTCCBC
T ss_pred CCCcCCCCcCchh
Confidence 4579999999763
No 141
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.47 E-value=1.4 Score=22.19 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=9.1
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2eoj_A 10 ENPYECCECGKV 21 (44)
T ss_dssp CCSCEETTTTEE
T ss_pred CcCeeCCCCCCc
Confidence 357889888875
No 142
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.35 E-value=1.6 Score=22.11 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2yrj_A 10 EKPYRCGECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCcc
Confidence 3568888888753
No 143
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.25 E-value=1.9 Score=21.84 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eop_A 10 EKPHECRECGKSF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeeCCCCCchh
Confidence 4579999999763
No 144
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.19 E-value=1.3 Score=22.64 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=9.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|++||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoz_A 10 EKPYSCNVCGKAF 22 (46)
T ss_dssp CCSEEETTTTEEE
T ss_pred CCCeECcccChhh
Confidence 3568888888653
No 145
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.18 E-value=1.7 Score=22.16 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~F 22 (46)
T 2em3_A 10 EKPYECKVCSKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCccc
Confidence 3568888888753
No 146
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.03 E-value=1.9 Score=21.98 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em6_A 10 EKCYKCDVCGKEF 22 (46)
T ss_dssp CCCCBCSSSCCBC
T ss_pred CCCeECCCCCccc
Confidence 4578999998753
No 147
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=68.02 E-value=1.8 Score=22.02 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep3_A 10 EKPYRCAECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECCCCCchh
Confidence 3578899988754
No 148
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.83 E-value=1.9 Score=22.05 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.|++.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eom_A 10 ERGHRCSDCGKFF 22 (46)
T ss_dssp CSSCCCSSSCCCC
T ss_pred CCCcCCCCCCCee
Confidence 4578999998753
No 149
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.83 E-value=1.5 Score=22.32 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eq0_A 10 EKPYKCHECGKVF 22 (46)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCeECCCCCchh
Confidence 4568888888753
No 150
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=67.67 E-value=2 Score=21.93 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emk_A 10 EKPYECKECGKAF 22 (46)
T ss_dssp SCSCBCSSSCCBC
T ss_pred CCceECCCCCchh
Confidence 4579999999863
No 151
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=67.50 E-value=1.7 Score=23.00 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 5 ~kp~~C~~C~k~F 17 (48)
T 3iuf_A 5 DKPYACDICGKRY 17 (48)
T ss_dssp TSCEECTTTCCEE
T ss_pred CcCEECCCcCccc
Confidence 4578888888653
No 152
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.35 E-value=1.9 Score=21.78 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (44)
T 2eou_A 10 KTTSECQECGKIF 22 (44)
T ss_dssp SCCCCCTTTCCCC
T ss_pred CcCeECCCCCccc
Confidence 3578899888753
No 153
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.34 E-value=1.8 Score=22.14 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|++||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em2_A 10 EKPFKCKECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCEECCcCCchh
Confidence 3578888888753
No 154
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.31 E-value=2 Score=21.89 Aligned_cols=13 Identities=38% Similarity=0.794 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2ytn_A 10 KKPYKCNECGKVF 22 (46)
T ss_dssp CSSCBCTTTCCBC
T ss_pred CcCeECCCCCCee
Confidence 4679999999763
No 155
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=67.28 E-value=1.8 Score=22.00 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ema_A 10 EKRYKCNECGKVF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CcCcCCCCCcchh
Confidence 4578888888753
No 156
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.17 E-value=1.8 Score=22.03 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytj_A 10 EKPYICAECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCChhh
Confidence 4578899998764
No 157
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.12 E-value=2.1 Score=21.80 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eoq_A 10 EKPFKCDICGKSF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCcCCchh
Confidence 4579999999763
No 158
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.86 E-value=2 Score=21.95 Aligned_cols=13 Identities=38% Similarity=0.725 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eoo_A 10 ERPYGCNECGKNF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCEEccccCccc
Confidence 4578888888753
No 159
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.79 E-value=2 Score=21.80 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq4_A 10 EKLYNCKECGKSF 22 (46)
T ss_dssp CCCCCBTTTTBCC
T ss_pred CCCeECCCCCCcc
Confidence 4579999999763
No 160
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.78 E-value=2 Score=21.77 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2epw_A 10 EKPCKCTECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCCCCCCcc
Confidence 3578999998763
No 161
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=66.75 E-value=2.2 Score=21.79 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ely_A 10 EKPFKCVECGKGF 22 (46)
T ss_dssp CCSBCCSSSCCCB
T ss_pred CCCcccCccCccc
Confidence 4578999998753
No 162
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.73 E-value=2 Score=21.90 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2en9_A 10 KKLFKCNECKKTF 22 (46)
T ss_dssp SCCCBCTTTCCBC
T ss_pred CCCEECCccCccc
Confidence 4578999998753
No 163
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=66.70 E-value=1.5 Score=24.68 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=18.7
Q ss_pred hcccccCC--CCceeeE-----E---e--eeeeeeeCCCCceE
Q 044880 33 HSKYFCEF--CGKYAVK-----R---K--AVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~Cpf--CGk~~Vk-----R---~--a~GIW~C~~Cg~~~ 63 (91)
..+|.|+. |++.-.. + . +.--+.|..|++.|
T Consensus 36 ~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F 78 (79)
T 2dlk_A 36 QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78 (79)
T ss_dssp CCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred CCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence 35688888 8875311 1 1 22347788888765
No 164
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=66.68 E-value=2.1 Score=21.74 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2em0_A 10 EKTWKCRECDMCF 22 (46)
T ss_dssp CCCCCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4579999999863
No 165
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=66.61 E-value=1.9 Score=21.88 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em9_A 10 EKPYNCKECGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCcccccc
Confidence 3578999998764
No 166
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.51 E-value=1.9 Score=21.82 Aligned_cols=13 Identities=46% Similarity=0.835 Sum_probs=9.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eor_A 10 EKPYNCEECGKAF 22 (46)
T ss_dssp CCSEECTTTCCEE
T ss_pred CcCccCCCCCCCc
Confidence 3568888887753
No 167
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.51 E-value=1.6 Score=22.16 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq3_A 10 EKPYECNQCGKAF 22 (46)
T ss_dssp CCSSEETTTTEEC
T ss_pred CCCeECCCCChhh
Confidence 4578888888753
No 168
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.44 E-value=2.1 Score=21.76 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2epz_A 10 EKPFDCIDCGKAF 22 (46)
T ss_dssp CCSBCCTTTCCCB
T ss_pred CCCeECCCCCcee
Confidence 4579999999863
No 169
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.42 E-value=1.9 Score=21.94 Aligned_cols=13 Identities=38% Similarity=0.830 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eml_A 10 EKPYECSVCGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCCCcCCcc
Confidence 4578899998753
No 170
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.38 E-value=1.5 Score=22.29 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=8.8
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (45)
T 2epu_A 10 QKPFECTHCGKS 21 (45)
T ss_dssp CCSEEETTTTEE
T ss_pred CcCccCCCCCCc
Confidence 356888888875
No 171
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.35 E-value=2 Score=21.88 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emh_A 10 ERPYICTVCGKAF 22 (46)
T ss_dssp CCSEECTTTCCEE
T ss_pred CCCcCCCCCCchh
Confidence 3578899998753
No 172
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.27 E-value=2.2 Score=21.59 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (47)
T 2epx_A 10 KKPYECIECGKAF 22 (47)
T ss_dssp CCSBCCSSSCCCB
T ss_pred CCCEECCccCchh
Confidence 3579999999753
No 173
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.23 E-value=2.1 Score=21.70 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eme_A 10 EKPYVCDYCGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECCCCChhh
Confidence 3578999998753
No 174
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.21 E-value=1.9 Score=21.91 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emy_A 10 ENPYECHECGKAF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CcCcCCCCCCccc
Confidence 3568888888753
No 175
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=66.19 E-value=2.1 Score=21.70 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytr_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCTTCCTTTCCCC
T ss_pred CcCcCCCCCCCcc
Confidence 4679999999853
No 176
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.08 E-value=2.3 Score=21.53 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (43)
T 2yrm_A 8 NGAFFCNECDCRF 20 (43)
T ss_dssp SCCBCCSSSCCCB
T ss_pred CCCEECCCCCCee
Confidence 4578899988753
No 177
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=65.87 E-value=3.6 Score=30.39 Aligned_cols=28 Identities=21% Similarity=0.551 Sum_probs=21.0
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCce
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCGKV 62 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg~~ 62 (91)
.-.||.||.......+--...|..|+..
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred CCccccCCCcCccCCCceeeeCCCCCCE
Confidence 3489999998866555556789999864
No 178
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.84 E-value=2.1 Score=21.73 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ene_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp SSSEECSSSCCEE
T ss_pred CCCeECCCCCchh
Confidence 4578999998753
No 179
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.82 E-value=2.3 Score=21.69 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytq_A 10 EKPYGCSECGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CCCcCCCccChhh
Confidence 4579999999863
No 180
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=65.80 E-value=2.1 Score=21.70 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2el4_A 10 VKPYGCSQCAKTF 22 (46)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCceECCCCCchh
Confidence 4578999998764
No 181
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.51 E-value=2.2 Score=21.69 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em7_A 10 EKPYKCEECGKGF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCccCCCccchh
Confidence 4578999998753
No 182
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.34 E-value=2.2 Score=21.86 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytm_A 10 EKPYKCMECGKAF 22 (46)
T ss_dssp CCSSSBTTTTBCC
T ss_pred CCCcCCCCCCchh
Confidence 4579999999753
No 183
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.31 E-value=2.4 Score=21.63 Aligned_cols=13 Identities=46% Similarity=0.771 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2elz_A 10 EKPYKCEDCGKGY 22 (46)
T ss_dssp CSSCBCSSSCCBC
T ss_pred CCCeeCcccCchh
Confidence 4579999999863
No 184
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.27 E-value=2.2 Score=21.75 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emf_A 10 GKHFECTECGKAF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCeECCCCCchh
Confidence 4578999998764
No 185
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=65.18 E-value=2 Score=26.13 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=22.7
Q ss_pred hhcccccCCCCceeeEE----------eeeeeeeeC--CCCceEec
Q 044880 32 QHSKYFCEFCGKYAVKR----------KAVGIWGCK--DCGKVKAG 65 (91)
Q Consensus 32 q~~ky~CpfCGk~~VkR----------~a~GIW~C~--~Cg~~~AG 65 (91)
...+|.|+.||+.-... .+...+.|. .|++.|.-
T Consensus 31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 76 (124)
T 1ubd_C 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 76 (124)
T ss_dssp SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCC
Confidence 44679999999864211 133568997 49988853
No 186
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=65.14 E-value=4.3 Score=25.04 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=19.7
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
..||.|+.+..--...|-=.|..|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 4799999875433344566899998654
No 187
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=65.13 E-value=2.1 Score=22.84 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 22 ~k~~~C~~C~k~f 34 (54)
T 1yui_A 22 EQPATCPICYAVI 34 (54)
T ss_dssp SCCEECTTTCCEE
T ss_pred CCCccCCCCCccc
Confidence 4678999998753
No 188
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.92 E-value=2.3 Score=21.62 Aligned_cols=13 Identities=38% Similarity=0.715 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2enc_A 10 EKPFKCEECGKGF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCcCCCCCCCcC
Confidence 4578999998764
No 189
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.84 E-value=2.2 Score=21.69 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2ytg_A 10 EKPFKCGECGKSY 22 (46)
T ss_dssp CCSEECTTTCCEE
T ss_pred CCCeECCCCCccc
Confidence 4578999998764
No 190
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=64.53 E-value=4.3 Score=24.90 Aligned_cols=28 Identities=4% Similarity=-0.090 Sum_probs=19.5
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
-.||.|+.+..--...|-=.|..|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4799999875433334666899998654
No 191
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.33 E-value=2.4 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2em5_A 10 TKSHQCHECGRGF 22 (46)
T ss_dssp SCSEECSSSCCEE
T ss_pred CCCeECCcCCCcc
Confidence 4578999998764
No 192
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=64.23 E-value=4.2 Score=24.95 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=19.5
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
..||.|+.+..--...|-=.|..|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4799999875433334666899998654
No 193
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=64.21 E-value=4.4 Score=23.11 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=25.3
Q ss_pred ccCCCCceee--E---Eeeeeeee-------eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV--K---RKAVGIWG-------CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V--k---R~a~GIW~-------C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... . +.....|| |..|+..+.|..|.+
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~ 49 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 49 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEE
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEE
Confidence 5999998754 1 22335899 999999999887764
No 194
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.03 E-value=2.4 Score=21.51 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emp_A 10 VKPYMCNECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCchh
Confidence 3578899988753
No 195
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.94 E-value=2.4 Score=21.50 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yu8_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CSSEECSSSCCEE
T ss_pred CCCeECCcCCchh
Confidence 4578899998753
No 196
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.94 E-value=2.4 Score=21.33 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (44)
T 2emx_A 8 EKPFGCSCCEKAF 20 (44)
T ss_dssp CCCEECSSSSCEE
T ss_pred CcCccCCCCCccc
Confidence 3568888888753
No 197
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=63.88 E-value=4 Score=27.17 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=32.6
Q ss_pred cccCchhhHHHHHHHHHhhcc---cccCCCCceee------EEeeee-----eeeeCCCCce
Q 044880 15 TRYGASLRKQIKKMEVSQHSK---YFCEFCGKYAV------KRKAVG-----IWGCKDCGKV 62 (91)
Q Consensus 15 ~RYG~slRK~v~kie~~q~~k---y~CpfCGk~~V------kR~a~G-----IW~C~~Cg~~ 62 (91)
.+|+..++....+-.+.+... -.|..||...+ -|+..+ ++.|..||.+
T Consensus 42 r~Y~~~~~~is~k~~irlp~~~KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~ 103 (120)
T 1x0t_A 42 KRYVELALEIQKKAKVKIPRKWKRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYI 103 (120)
T ss_dssp HHHHHHHHHHHHHHTCCCCTTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCE
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 467777777777766655543 38999987432 334444 8899999965
No 198
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.80 E-value=2.5 Score=21.48 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep2_A 10 EKPYECSICGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCcCCCCCCccc
Confidence 4578899988753
No 199
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.40 E-value=1.9 Score=21.74 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=8.0
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (44)
T 2eox_A 11 KSYNCNECGKA 21 (44)
T ss_dssp CCEEETTTTEE
T ss_pred CCeECcccCcc
Confidence 56788888764
No 200
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.40 E-value=2.5 Score=21.51 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em8_A 10 EKPYKCVECGKGY 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECcccCchh
Confidence 4578899988754
No 201
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.32 E-value=2.7 Score=21.42 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytt_A 10 EKPYQCSECGKSF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CCCeeCCCCCccc
Confidence 4579999999753
No 202
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=63.29 E-value=2.5 Score=21.55 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2el6_A 10 VNPYKCSQCEKSF 22 (46)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCccc
Confidence 3578999998753
No 203
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.12 E-value=2.6 Score=21.32 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emm_A 10 ERPHKCNECGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCCCCChhh
Confidence 3578888888753
No 204
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=62.73 E-value=2.6 Score=21.39 Aligned_cols=11 Identities=9% Similarity=-0.203 Sum_probs=8.9
Q ss_pred hhcccccCCCC
Q 044880 32 QHSKYFCEFCG 42 (91)
Q Consensus 32 q~~ky~CpfCG 42 (91)
...+|.||+||
T Consensus 35 ~~~~~~C~~cg 45 (45)
T 2epq_A 35 GSVGKSGPSSG 45 (45)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCcCCC
Confidence 45689999997
No 205
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=62.63 E-value=4.3 Score=24.97 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=20.0
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
-..||.|+.+..--...|-=.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 35799999875433334556899998654
No 206
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.57 E-value=2.5 Score=21.46 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytd_A 10 EKPYKCSECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCCee
Confidence 3578899888753
No 207
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.18 E-value=2.7 Score=21.29 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2ytk_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp SCSEECSSSCCEE
T ss_pred CCCEeCCcCCCcc
Confidence 4578888888753
No 208
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.15 E-value=2.6 Score=21.29 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2en8_A 10 EKSHTCDECGKNF 22 (46)
T ss_dssp CSSEECTTTCCEE
T ss_pred CCCeECCCcCccc
Confidence 4578899998754
No 209
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.93 E-value=2.6 Score=21.35 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2yso_A 10 EKSHQCRECGEIF 22 (46)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCEEccccChhh
Confidence 3578899888753
No 210
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=61.45 E-value=3.3 Score=28.98 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=6.3
Q ss_pred eeeeCCCCceEe
Q 044880 53 IWGCKDCGKVKA 64 (91)
Q Consensus 53 IW~C~~Cg~~~A 64 (91)
.|.|..||++.-
T Consensus 138 ~~~C~~CG~i~~ 149 (170)
T 3pwf_A 138 VYICPICGYTAV 149 (170)
T ss_dssp EEECTTTCCEEE
T ss_pred eeEeCCCCCeeC
Confidence 455555555544
No 211
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=61.25 E-value=4.9 Score=26.97 Aligned_cols=48 Identities=25% Similarity=0.471 Sum_probs=32.0
Q ss_pred cccCchhhHHHHHHHHHhhcc---cccCCCCceee------EEeeee-----eeeeCCCCce
Q 044880 15 TRYGASLRKQIKKMEVSQHSK---YFCEFCGKYAV------KRKAVG-----IWGCKDCGKV 62 (91)
Q Consensus 15 ~RYG~slRK~v~kie~~q~~k---y~CpfCGk~~V------kR~a~G-----IW~C~~Cg~~ 62 (91)
.+|+..++....+-.+.+... -.|..|+...+ -|+..+ ++.|..||.+
T Consensus 37 r~Y~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~ 98 (123)
T 2k3r_A 37 KRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHI 98 (123)
T ss_dssp HHHHHHHHHHHHHHTCCCSSTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 467777777767666655544 37999987432 344344 8899999965
No 212
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.07 E-value=2.2 Score=21.68 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ysp_A 10 EKPYKCEKCGKGY 22 (46)
T ss_dssp CCSEEETTTTEEE
T ss_pred CCCeECCCCCCcc
Confidence 3578888888753
No 213
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.02 E-value=2.8 Score=21.27 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.|++.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2ep0_A 10 EKPYKCDVCHKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCcccCccc
Confidence 4568888888753
No 214
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=60.66 E-value=6 Score=27.82 Aligned_cols=19 Identities=37% Similarity=0.994 Sum_probs=11.9
Q ss_pred EEeeeeeeeeCCCCceEec
Q 044880 47 KRKAVGIWGCKDCGKVKAG 65 (91)
Q Consensus 47 kR~a~GIW~C~~Cg~~~AG 65 (91)
++...-+|.|..||+++.|
T Consensus 149 ~~~~~~~~~C~~CG~~~~g 167 (191)
T 1lko_A 149 LREQATKWRCRNCGYVHEG 167 (191)
T ss_dssp EEEEEEEEEETTTCCEEEE
T ss_pred ccCCCceEEECCCCCEeeC
Confidence 3344456777777777764
No 215
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=59.71 E-value=2.7 Score=26.73 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=8.1
Q ss_pred ccccCCCCcee
Q 044880 35 KYFCEFCGKYA 45 (91)
Q Consensus 35 ky~CpfCGk~~ 45 (91)
.-.||+||.+-
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 34699998763
No 216
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=59.36 E-value=3.5 Score=18.94 Aligned_cols=10 Identities=40% Similarity=1.401 Sum_probs=6.7
Q ss_pred ccccC--CCCce
Q 044880 35 KYFCE--FCGKY 44 (91)
Q Consensus 35 ky~Cp--fCGk~ 44 (91)
+|.|+ .||+.
T Consensus 2 p~~C~~~~C~k~ 13 (31)
T 1sp2_A 2 PFMCTWSYCGKR 13 (31)
T ss_dssp CCBCCSTTCCCB
T ss_pred CcCCcCCCCCcc
Confidence 57776 67764
No 217
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.01 E-value=2.5 Score=21.40 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~F 22 (46)
T 2eoe_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCSSEETTTTEEC
T ss_pred CCCeECCCcChhh
Confidence 3578899998753
No 218
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.82 E-value=5.2 Score=23.94 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=6.6
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.|++||+.
T Consensus 53 ~~~~C~~C~k~ 63 (98)
T 2gqj_A 53 DALKCQHCRKQ 63 (98)
T ss_dssp HHHSCSSSCCC
T ss_pred CCEECCCCCCc
Confidence 45666666654
No 219
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.57 E-value=2.6 Score=21.40 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2en6_A 10 EKPYGCNECGKTF 22 (46)
T ss_dssp SCCEEETTTTEEE
T ss_pred CcCeECCCCCccc
Confidence 3568888888753
No 220
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=58.32 E-value=15 Score=21.00 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=21.2
Q ss_pred hcccccCCCCceeeE------Ee----eeeeeeeCCCCceE
Q 044880 33 HSKYFCEFCGKYAVK------RK----AVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~CpfCGk~~Vk------R~----a~GIW~C~~Cg~~~ 63 (91)
-....||.||....- |. .+=...|.+||..+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 345689999987531 11 24468999999875
No 221
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=58.01 E-value=5 Score=27.20 Aligned_cols=19 Identities=11% Similarity=0.358 Sum_probs=15.8
Q ss_pred eeeeeeeeCCCCceEeccc
Q 044880 49 KAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 49 ~a~GIW~C~~Cg~~~AGGA 67 (91)
..-+.|.|..||+.|.+..
T Consensus 66 ~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EECCEEEETTTCCEEEGGG
T ss_pred ecCCcEECCCCCCEEeccc
Confidence 3457899999999999866
No 222
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=57.98 E-value=2.5 Score=30.31 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=13.4
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCc
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCGK 61 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg~ 61 (91)
.|.|+.||-.-. +.--|.|.-||.
T Consensus 171 ~~~C~~CG~i~~---g~~p~~CP~C~~ 194 (202)
T 1yuz_A 171 FHLCPICGYIHK---GEDFEKCPICFR 194 (202)
T ss_dssp EEECSSSCCEEE---SSCCSBCTTTCC
T ss_pred EEEECCCCCEEc---CcCCCCCCCCCC
Confidence 567777775522 122277777763
No 223
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=57.89 E-value=5.4 Score=28.08 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=24.9
Q ss_pred HHhhcccccCCCCceeeEEeeeeeeeeCCCCceEe
Q 044880 30 VSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 30 ~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~A 64 (91)
..|..--.||.|+..-+.- .-..|.|..|+.-|.
T Consensus 22 ~~M~~lP~CP~C~seytYe-Dg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 22 HMVSTLPPCPQCNSEYTYE-DGALLVCPECAHEWS 55 (138)
T ss_dssp -CCCCSCCCTTTCCCCCEE-CSSSEEETTTTEEEC
T ss_pred cccccCCCCCCCCCcceEe-cCCeEECCccccccC
Confidence 3343445899999988773 446899999988774
No 224
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=57.26 E-value=7 Score=21.98 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=25.4
Q ss_pred cccCCCCceee-----EEeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~V-----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++... -+.....|| |..|+..+.++.|..
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~ 56 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 56 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEE
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEe
Confidence 37999998643 234446897 889999998887643
No 225
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=57.15 E-value=25 Score=26.10 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=22.5
Q ss_pred cccccCCCCceeeE------------------------EeeeeeeeeCCCCceEecc
Q 044880 34 SKYFCEFCGKYAVK------------------------RKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 34 ~ky~CpfCGk~~Vk------------------------R~a~GIW~C~~Cg~~~AGG 66 (91)
....||.||.. +. +...-++.|..|+..+..-
T Consensus 11 ~~~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~ 66 (416)
T 4e2x_A 11 PPTACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTE 66 (416)
T ss_dssp -CEECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESS
T ss_pred cCCcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecC
Confidence 34679999988 32 2234578999999887653
No 226
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=56.95 E-value=6.8 Score=25.10 Aligned_cols=38 Identities=29% Similarity=0.575 Sum_probs=26.6
Q ss_pred ccccCCCCceeeEE---------eeeeeeeeCCCCceEecccccccc
Q 044880 35 KYFCEFCGKYAVKR---------KAVGIWGCKDCGKVKAGGAYTLNT 72 (91)
Q Consensus 35 ky~CpfCGk~~VkR---------~a~GIW~C~~Cg~~~AGGAy~~~T 72 (91)
-|+|.-||...-|- .+..--.|=.|++.|.|..|.-.|
T Consensus 10 ~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 10 FFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHV 56 (79)
T ss_dssp EEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTCC
T ss_pred EEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCCCCEeCEe
Confidence 36788898654330 122345788899999999998776
No 227
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=56.29 E-value=7 Score=23.93 Aligned_cols=29 Identities=3% Similarity=-0.229 Sum_probs=20.2
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
-..||.|..+..--...|-=.|..|+..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 34799999875443445666899998554
No 228
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.26 E-value=3 Score=21.14 Aligned_cols=13 Identities=38% Similarity=0.771 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2en1_A 10 EKPFKCEECGKRF 22 (46)
T ss_dssp CCSEEETTTTEEE
T ss_pred CCCeeCCCCCccc
Confidence 3568888888753
No 229
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.14 E-value=4.8 Score=22.16 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=16.4
Q ss_pred cccccCCCCceee----E---E-eeeeeeeeC-CCCceEe
Q 044880 34 SKYFCEFCGKYAV----K---R-KAVGIWGCK-DCGKVKA 64 (91)
Q Consensus 34 ~ky~CpfCGk~~V----k---R-~a~GIW~C~-~Cg~~~A 64 (91)
.+|.|++||+.-. + + .+.--..|. .|++.|.
T Consensus 9 ~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~ 48 (66)
T 2eod_A 9 RTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTV 48 (66)
T ss_dssp CEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEE
T ss_pred CCeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccc
Confidence 4567777776531 0 0 122345677 7776654
No 230
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=54.52 E-value=3.5 Score=18.26 Aligned_cols=9 Identities=44% Similarity=1.324 Sum_probs=4.4
Q ss_pred ccccC--CCCc
Q 044880 35 KYFCE--FCGK 43 (91)
Q Consensus 35 ky~Cp--fCGk 43 (91)
+|.|+ .||+
T Consensus 2 ~~~C~~~~C~k 12 (29)
T 2ab3_A 2 VYVCHFENCGR 12 (29)
T ss_dssp CEEECSTTTCE
T ss_pred CCCCcCCcCcC
Confidence 34555 5544
No 231
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=54.42 E-value=7.1 Score=24.93 Aligned_cols=30 Identities=30% Similarity=0.637 Sum_probs=22.5
Q ss_pred hhcccccCC--CCceeeEEeeeeeeeeCCCCceEecc
Q 044880 32 QHSKYFCEF--CGKYAVKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 32 q~~ky~Cpf--CGk~~VkR~a~GIW~C~~Cg~~~AGG 66 (91)
...++.|++ |.+..+ +++ .|..|+..|=.-
T Consensus 22 ~~~~~~C~~~~Ck~~~~----l~f-~C~~C~~~FC~~ 53 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVEL----VAV-ICPYCEKNFCLR 53 (86)
T ss_dssp CSCCEECCSTTCCCEES----SCE-ECTTTCCEECGG
T ss_pred CCCCCCCCCcCCCCCCc----cce-ECCCCCcccccc
Confidence 355678999 998754 344 899999998653
No 232
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=53.93 E-value=1.1 Score=28.24 Aligned_cols=39 Identities=26% Similarity=0.641 Sum_probs=27.1
Q ss_pred chhhHHHHHHHHHhhcccccCCCCceeeE-EeeeeeeeeCCCCc
Q 044880 19 ASLRKQIKKMEVSQHSKYFCEFCGKYAVK-RKAVGIWGCKDCGK 61 (91)
Q Consensus 19 ~slRK~v~kie~~q~~ky~CpfCGk~~Vk-R~a~GIW~C~~Cg~ 61 (91)
+.|..+...-+...|..+.|..|+..-+. +. |+|..|-.
T Consensus 5 ~~~~~~~~~~~~~~H~~~~Cd~C~~~pI~G~R----ykC~~C~d 44 (82)
T 2fc7_A 5 SSGQQMQAESGFVQHVGFKCDNCGIEPIQGVR----WHCQDCPP 44 (82)
T ss_dssp CCCSSSCSSTTSCEESSCCCSSSCCSSEESCE----EEESSSCS
T ss_pred cchhhhhccccCCeeCcCCCCCCCCCcceece----EECCcCCC
Confidence 45555555666667888899999975332 22 99999964
No 233
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=53.28 E-value=1.9 Score=26.26 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=9.9
Q ss_pred hhcccccCCCCce
Q 044880 32 QHSKYFCEFCGKY 44 (91)
Q Consensus 32 q~~ky~CpfCGk~ 44 (91)
+.++|+||.|+-.
T Consensus 23 ~~akY~CPrC~~r 35 (59)
T 1x4s_A 23 QPARYTCPRCNAP 35 (59)
T ss_dssp EEECEECTTTCCE
T ss_pred CCccccCcCCCCC
Confidence 4678888888754
No 234
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=53.08 E-value=4.4 Score=24.02 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.5
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 11 ekpy~C~~CgK~F 23 (66)
T 2epp_A 11 AGILPCGLCGKVF 23 (66)
T ss_dssp CCCCCCTTTCCCC
T ss_pred ccCcCCCCCCCcc
Confidence 5689999999864
No 235
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=52.57 E-value=5.8 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.472 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhhccc-ccCCCCcee--eEEe-eeeeeeeCCCCce
Q 044880 22 RKQIKKMEVSQHSKY-FCEFCGKYA--VKRK-AVGIWGCKDCGKV 62 (91)
Q Consensus 22 RK~v~kie~~q~~ky-~CpfCGk~~--VkR~-a~GIW~C~~Cg~~ 62 (91)
-+.+.++...=-.+| .||.|+.+. +.+. ..=.=+|..||..
T Consensus 90 ~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 90 PYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAE 134 (148)
T ss_dssp HHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCC
T ss_pred HHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCC
Confidence 445555544444556 899999864 3332 2223379999753
No 236
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=52.23 E-value=19 Score=27.41 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=41.2
Q ss_pred hhcccccCCCCcee---eE---------Ee-------eeeeeeeCC--CCceEecccccccccHHHHHHHHHHHHHh
Q 044880 32 QHSKYFCEFCGKYA---VK---------RK-------AVGIWGCKD--CGKVKAGGAYTLNTASAVTVRSTIRRLRE 87 (91)
Q Consensus 32 q~~ky~CpfCGk~~---Vk---------R~-------a~GIW~C~~--Cg~~~AGGAy~~~T~~~~t~~~~i~rl~e 87 (91)
....++||.|...- |. |. ..|-|.|.- |.+.+.-....|+...+..+..+-+|.++
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~~~ 254 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQ 254 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHHHH
Confidence 35567899888643 21 11 236689999 99999999999999999988877665533
No 237
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=51.96 E-value=8.1 Score=26.61 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=17.3
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCc
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGK 61 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~ 61 (91)
+.||.|+..... .-+.|.|..|..
T Consensus 3 ~~Cp~C~~~~~~--~~~~~~C~~~~~ 26 (269)
T 1p91_A 3 FSCPLCHQPLSR--EKNSYICPQRHQ 26 (269)
T ss_dssp BBCTTTCCBCEE--ETTEEECTTCCE
T ss_pred ccCCCCCcccee--CCCEEECCCCCc
Confidence 789999876433 225699999863
No 238
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=51.90 E-value=5.6 Score=18.24 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=7.4
Q ss_pred cccccC--CCCce
Q 044880 34 SKYFCE--FCGKY 44 (91)
Q Consensus 34 ~ky~Cp--fCGk~ 44 (91)
.+|.|+ .||+.
T Consensus 2 k~~~C~~~~C~k~ 14 (32)
T 1zfd_A 2 RPYSCDHPGCDKA 14 (32)
T ss_dssp CSBCCCCTTCCCC
T ss_pred CCCcCcCCCCCCc
Confidence 367787 67764
No 239
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=50.56 E-value=16 Score=23.60 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=11.8
Q ss_pred eeeeeeeeCCCCceEeccc
Q 044880 49 KAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 49 ~a~GIW~C~~Cg~~~AGGA 67 (91)
..-+.|.|..||+.|..-.
T Consensus 69 ~~p~~~~C~~CG~~~e~~~ 87 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPNA 87 (119)
T ss_dssp EECCEEECSSSSCEECSCC
T ss_pred eccceEEcCCCCCEEeCCC
Confidence 3446677777777766543
No 240
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=50.54 E-value=7.7 Score=24.57 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.5
Q ss_pred cccCCCCceee-----EEeeeeeee-------eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAV-----KRKAVGIWG-------CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~V-----kR~a~GIW~-------C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++... -+.....|| |..|++.+.|..|.+
T Consensus 64 ~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~ 110 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 110 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEE
T ss_pred ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEe
Confidence 46999998754 334457899 889999998887754
No 241
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=50.26 E-value=17 Score=21.27 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=25.7
Q ss_pred ccccCCCCceee----EEeeeeeee-----eCCCCceEecccccc
Q 044880 35 KYFCEFCGKYAV----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 35 ky~CpfCGk~~V----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.-.|+.|++... -+...-.|| |..|+..+.++.|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 51 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAI 51 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEE
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEe
Confidence 457999998652 223345786 999999999987654
No 242
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.10 E-value=5.2 Score=21.01 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=9.4
Q ss_pred hcccccCC--CCcee
Q 044880 33 HSKYFCEF--CGKYA 45 (91)
Q Consensus 33 ~~ky~Cpf--CGk~~ 45 (91)
..+|.|++ ||+.-
T Consensus 7 ekp~~C~~~~C~k~F 21 (38)
T 2eln_A 7 GILLKCPTDGCDYST 21 (38)
T ss_dssp CCCEECSSSSCCCEE
T ss_pred CCCCCCCCCCCCCcc
Confidence 45788986 88754
No 243
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=49.09 E-value=11 Score=26.57 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=20.8
Q ss_pred ccccCCCCceeeE------Ee----eeeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVK------RK----AVGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~Vk------R~----a~GIW~C~~Cg~~~ 63 (91)
.+.||.||....- |. .+-...|..||..|
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 3689999986521 11 35688999999876
No 244
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=48.78 E-value=5.9 Score=26.34 Aligned_cols=24 Identities=29% Similarity=0.586 Sum_probs=17.2
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCce
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKV 62 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~ 62 (91)
-.||.||..+.-- -=+.|.+||+.
T Consensus 17 ~lCrRCG~~sfH~---qK~~CgkCGYp 40 (97)
T 2zkr_2 17 TLCRRCGSKAYHL---QKSTCGKCGYP 40 (97)
T ss_dssp ECCTTTCSSCEET---TSCCBTTTCTT
T ss_pred CcCCCCCCccCcC---ccccCcccCCc
Confidence 3799999977521 23689999964
No 245
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=48.64 E-value=5.1 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.649 Sum_probs=13.9
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCC
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
-.||.||...+--. .|..||
T Consensus 31 ~~c~~cG~~~~pH~-----vc~~CG 50 (60)
T 2zjr_Z 31 TECPQCHGKKLSHH-----ICPNCG 50 (60)
T ss_dssp EECTTTCCEECTTB-----CCTTTC
T ss_pred eECCCCCCEeCCce-----EcCCCC
Confidence 37999998865433 377887
No 246
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=48.45 E-value=22 Score=26.90 Aligned_cols=29 Identities=28% Similarity=0.649 Sum_probs=20.2
Q ss_pred ccccCCCCceeeE------Eee----eeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVK------RKA----VGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~Vk------R~a----~GIW~C~~Cg~~~ 63 (91)
.+.||.||...+. |.+ +=...|..||..|
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 5899999987531 211 2367899999865
No 247
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=48.44 E-value=6.2 Score=19.08 Aligned_cols=12 Identities=33% Similarity=0.946 Sum_probs=7.6
Q ss_pred hcccccCC--CCce
Q 044880 33 HSKYFCEF--CGKY 44 (91)
Q Consensus 33 ~~ky~Cpf--CGk~ 44 (91)
..+|.|++ ||+.
T Consensus 6 ~k~~~C~~~~C~k~ 19 (37)
T 1va1_A 6 KKQHICHIQGCGKV 19 (37)
T ss_dssp CCCEECCSTTCCCE
T ss_pred CCCCCCCCCCCCCc
Confidence 35677775 7664
No 248
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=47.67 E-value=13 Score=21.25 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=17.5
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
-.|..|++... .| .+|+.|+..+
T Consensus 15 t~C~~C~k~i~----~G-~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSMI----FG-VKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSSC----CE-EEETTTTEEE
T ss_pred cCccccCceeE----Cc-CCCCCCCCcc
Confidence 36999988774 35 5999998764
No 249
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=47.52 E-value=5.2 Score=22.28 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=22.8
Q ss_pred hhcccccCC--CCceeeE--------EeeeeeeeeCC---CCceEe
Q 044880 32 QHSKYFCEF--CGKYAVK--------RKAVGIWGCKD---CGKVKA 64 (91)
Q Consensus 32 q~~ky~Cpf--CGk~~Vk--------R~a~GIW~C~~---Cg~~~A 64 (91)
...+|.|+. |++.-.. +.-.| +.|.. |++.|.
T Consensus 28 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C~~~f~ 72 (85)
T 2j7j_A 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGK 72 (85)
T ss_dssp TTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EECCSCSSCCCEES
T ss_pred CCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CCCCCCCCCCCccC
Confidence 356799998 9986422 22345 89999 999884
No 250
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=47.49 E-value=6.4 Score=32.79 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=20.5
Q ss_pred cccccCCCCceeeEEeeeeeeeeCC
Q 044880 34 SKYFCEFCGKYAVKRKAVGIWGCKD 58 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~a~GIW~C~~ 58 (91)
.+..||.||.+.++-.+.-.|.|..
T Consensus 404 ~P~~CP~Cgs~~~~~~~~~~~rC~n 428 (586)
T 4glx_A 404 FPTHCPVCGSDVERVEGEAVARCTG 428 (586)
T ss_dssp CCSBCTTTCCBEECCTTCSCCEESC
T ss_pred CCCcCCCCCCchhhhhcccccEeCC
Confidence 4678999999988767777899974
No 251
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.44 E-value=11 Score=21.91 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=24.6
Q ss_pred ccCCCCceee---EEeeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV---KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V---kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... -+.....|| |..|+..+.++.|.+
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFE 58 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEE
T ss_pred ccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEe
Confidence 6999998642 223346786 899999999887654
No 252
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.32 E-value=18 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhhccc-ccCCCCcee--eEE---eeeeeeeeCCCCceE
Q 044880 21 LRKQIKKMEVSQHSKY-FCEFCGKYA--VKR---KAVGIWGCKDCGKVK 63 (91)
Q Consensus 21 lRK~v~kie~~q~~ky-~CpfCGk~~--VkR---~a~GIW~C~~Cg~~~ 63 (91)
--+.+.++...=-.+| .||.|+.+. +.+ ...=.=+|..||..-
T Consensus 88 ~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 88 EANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred CHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 3455555555555566 899999864 443 122233799998653
No 253
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.25 E-value=6.4 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=9.2
Q ss_pred HhhcccccCCCCce
Q 044880 31 SQHSKYFCEFCGKY 44 (91)
Q Consensus 31 ~q~~ky~CpfCGk~ 44 (91)
-...+|.|++||+.
T Consensus 39 c~~~~~~C~~C~~~ 52 (75)
T 2d9k_A 39 CGARTELCGNCGRN 52 (75)
T ss_dssp HHHCEEECSSSCCE
T ss_pred cCCCceEcccCCCc
Confidence 34566777777774
No 254
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=46.21 E-value=8.3 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.502 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhccc-ccCCCCcee--eEEe-eeeeeeeCCCCce
Q 044880 23 KQIKKMEVSQHSKY-FCEFCGKYA--VKRK-AVGIWGCKDCGKV 62 (91)
Q Consensus 23 K~v~kie~~q~~ky-~CpfCGk~~--VkR~-a~GIW~C~~Cg~~ 62 (91)
+.+.++...=-.+| .||.|+.+. +.+. ..=.=+|..||..
T Consensus 89 ~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 89 FLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp SHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred HHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 44445444445566 799999874 3333 2223479999753
No 255
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=46.08 E-value=8.3 Score=26.01 Aligned_cols=9 Identities=44% Similarity=1.294 Sum_probs=4.4
Q ss_pred ccccCCCCc
Q 044880 35 KYFCEFCGK 43 (91)
Q Consensus 35 ky~CpfCGk 43 (91)
.|.|+-||+
T Consensus 132 ~y~C~~Cg~ 140 (165)
T 2lcq_A 132 RYVCIGCGR 140 (165)
T ss_dssp CEEESSSCC
T ss_pred EEECCCCCC
Confidence 345555554
No 256
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=46.02 E-value=11 Score=25.93 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 044880 21 LRKQIKKMEVSQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 60 (91)
Q Consensus 21 lRK~v~kie~~q~~ky~CpfCGk~~VkR~a--~GIW~C~~Cg 60 (91)
.|+.+.+.-.++...-.|.-||.......+ .||..|-.|.
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~Cs 63 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCS 63 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhh
Confidence 455665555666777899999998877765 4999999884
No 257
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=46.00 E-value=5.1 Score=22.12 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=19.2
Q ss_pred hhcccccCC--CCceeeE-----E---e--eeeeeeeC--CCCceEe
Q 044880 32 QHSKYFCEF--CGKYAVK-----R---K--AVGIWGCK--DCGKVKA 64 (91)
Q Consensus 32 q~~ky~Cpf--CGk~~Vk-----R---~--a~GIW~C~--~Cg~~~A 64 (91)
...+|.|+. |++.-.. + . +.-.+.|. .|++.|.
T Consensus 14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~ 60 (72)
T 2epa_A 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60 (72)
T ss_dssp CCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEES
T ss_pred ccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccC
Confidence 345678877 8875311 1 1 22347884 5887774
No 258
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.91 E-value=13 Score=20.94 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=25.0
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~Vk---R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
..|+.|++.... +...-.|| |..|+..+.++.|..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 48 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTA 48 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEE
T ss_pred CCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEe
Confidence 369999986532 12335786 899999998887764
No 259
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.81 E-value=14 Score=20.98 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=24.4
Q ss_pred ccCCCCceee-----EEeeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V-----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... -+...-.|| |..|+..+.++.|.+
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP 50 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEE
T ss_pred CCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCc
Confidence 6999998654 222335776 889999999887754
No 260
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=44.97 E-value=10 Score=27.10 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=13.3
Q ss_pred eeeeeeCCCCceEec
Q 044880 51 VGIWGCKDCGKVKAG 65 (91)
Q Consensus 51 ~GIW~C~~Cg~~~AG 65 (91)
.-+|.|..||++.-|
T Consensus 169 ~~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG 183 (202)
T ss_dssp CCEEECSSSCCEEES
T ss_pred CcEEEECCCCCEEcC
Confidence 458999999999987
No 261
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.51 E-value=9.5 Score=27.03 Aligned_cols=27 Identities=33% Similarity=0.735 Sum_probs=19.5
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCceEecc
Q 044880 36 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 36 y~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGG 66 (91)
-.|+.|++.- ..|. -||+.||..|=+.
T Consensus 162 ~~C~~C~~~F~~~~rr----hhCr~CG~v~C~~ 190 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRK----HHCRNCGQVFCGQ 190 (220)
T ss_dssp SBCTTTCCBCCSSSCC----EECTTTCCEECST
T ss_pred CccCCCCCccCCcccc----cccCCcCCEEChH
Confidence 3799998752 3333 4899999988765
No 262
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.48 E-value=6.9 Score=22.30 Aligned_cols=35 Identities=17% Similarity=0.475 Sum_probs=24.7
Q ss_pred cccCCCCceee-----EEeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~V-----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++... -+...-.|| |..|+..+.++.|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP 50 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEE
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCC
Confidence 47999998654 112234676 889999999887654
No 263
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.16 E-value=12 Score=21.77 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=24.9
Q ss_pred ccCCCCceee--EE---eeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV--KR---KAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V--kR---~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... .+ .....|| |..|+..+.++.|.+
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 60 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP 60 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEE
T ss_pred cCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEe
Confidence 7999998754 32 2345786 889999998887654
No 264
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.60 E-value=7.1 Score=18.69 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=6.3
Q ss_pred cccccCC--CCce
Q 044880 34 SKYFCEF--CGKY 44 (91)
Q Consensus 34 ~ky~Cpf--CGk~ 44 (91)
.+|.|++ ||+.
T Consensus 5 k~~~C~~~~C~k~ 17 (38)
T 1bhi_A 5 KPFLCTAPGCGQR 17 (38)
T ss_dssp CCEECCCTTTCCE
T ss_pred cceECCCCCCCcc
Confidence 4566663 6654
No 265
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.24 E-value=13 Score=21.78 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=25.2
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~Vk---R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++.... +...-.|| |..|+..+.|..|..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 58 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTV 58 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEEC
T ss_pred CccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEE
Confidence 369999986532 22335787 899999998887765
No 266
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=43.17 E-value=8.6 Score=22.17 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=6.9
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.|++||+.
T Consensus 74 ~~~~C~~C~~~ 84 (100)
T 2ebt_A 74 KPFQCGVCNRS 84 (100)
T ss_dssp CSCBCSSSCCB
T ss_pred CCeECCCCcCc
Confidence 45677777653
No 267
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.05 E-value=18 Score=20.84 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=24.9
Q ss_pred cccCCCCceee----EEeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAV----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~V----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++... -....-.|| |..|+..+.++.|..
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 53 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAE 53 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEE
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEe
Confidence 47999998653 112234787 899999999887654
No 268
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.91 E-value=12 Score=21.13 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=24.3
Q ss_pred cccCCCCceee---EEeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAV---KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~V---kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++... -+...-.|| |..|+..+.|..|..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 48 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA 48 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEE
T ss_pred CCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEe
Confidence 36999998642 222335786 889999998877654
No 269
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.10 E-value=7.4 Score=23.24 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=10.0
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
.++|+||.|+-.
T Consensus 21 ~~kY~CPrC~~~ 32 (56)
T 2yqq_A 21 KPKYRCPACRVP 32 (56)
T ss_dssp CCSEECTTTCCE
T ss_pred CCeeeCCCCCCC
Confidence 679999999854
No 270
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.05 E-value=11 Score=21.69 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=25.5
Q ss_pred ccccCCCCceee-----EEeeeeeee-----eCCCCceEecccccc
Q 044880 35 KYFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 35 ky~CpfCGk~~V-----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.-.|+.|++... -+.....|| |..|+..+.++.|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 56 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 56 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEE
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEe
Confidence 347999998652 223334675 889999999987654
No 271
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=41.79 E-value=33 Score=22.38 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=25.7
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCceEecccccccccHHHHHH
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 79 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~ 79 (91)
-.|..|+.. .++|.|=.||... -|-| ++..+-..++
T Consensus 25 ~~C~~C~~~------~~~W~CL~CG~vg-Cgr~-~~~HA~~H~~ 60 (109)
T 3c5k_A 25 QPCGDCGTI------QENWVCLSCYQVY-CGRY-INGHMLQHHG 60 (109)
T ss_dssp CCCTTTCCC------SSEEEETTTCCEE-ECTT-TTCHHHHHHH
T ss_pred CcCccccCC------CCeeeeeecCccc-cCCC-cChHHHHHhc
Confidence 469999875 3689999999999 4554 3555555544
No 272
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=41.67 E-value=31 Score=25.00 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=17.9
Q ss_pred ccccCCCCceeeEE---------eeeeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVKR---------KAVGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~VkR---------~a~GIW~C~~Cg~~~ 63 (91)
...||.|+...+=. .......|.+|+..+
T Consensus 22 ~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 22 ELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp EEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred EEECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence 45899998643111 111234899999865
No 273
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.99 E-value=20 Score=21.51 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.8
Q ss_pred ccccCCCCceee--E--Eeeeeeee-----eCCCCceEecccccc
Q 044880 35 KYFCEFCGKYAV--K--RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 35 ky~CpfCGk~~V--k--R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.-.|+.|++... . +.....|| |..|+..+.++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 59 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYAS 59 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEe
Confidence 347999998652 2 23335887 889999999987654
No 274
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=40.94 E-value=12 Score=24.81 Aligned_cols=27 Identities=30% Similarity=0.705 Sum_probs=19.4
Q ss_pred ccCCCCcee--eEEeeeeeeeeCCCCceEeccc
Q 044880 37 FCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 37 ~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGGA 67 (91)
.|+.|++.- ..|. -||+.||..|=+.-
T Consensus 71 ~C~~C~~~Fs~~~Rr----HHCR~CG~vfC~~C 99 (125)
T 1joc_A 71 NCMACGKGFSVTVRR----HHCRQCGNIFCAEC 99 (125)
T ss_dssp BCTTTCCBCCSSSCC----EECTTTCCEECGGG
T ss_pred CCcCcCCcccccccc----ccCCCCCeEEChHH
Confidence 699999852 3333 48999999887643
No 275
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.86 E-value=18 Score=20.81 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=23.1
Q ss_pred ccCCCCceee----EEeeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... -....-.|| |..|+..+.++.|..
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 44 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAE 44 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEE
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceEC
Confidence 4888888642 112234786 889999999887653
No 276
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=40.61 E-value=12 Score=21.30 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.5
Q ss_pred eeeeCCCCceEe
Q 044880 53 IWGCKDCGKVKA 64 (91)
Q Consensus 53 IW~C~~Cg~~~A 64 (91)
+|+|..||+++-
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 699999998886
No 277
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.60 E-value=9.8 Score=22.73 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=5.3
Q ss_pred cccccCCCCc
Q 044880 34 SKYFCEFCGK 43 (91)
Q Consensus 34 ~ky~CpfCGk 43 (91)
.+|.|+.||+
T Consensus 79 ~~~~C~~C~k 88 (115)
T 2dmi_A 79 KVLKCMYCGH 88 (115)
T ss_dssp SSCBCSSSCC
T ss_pred cceECCCCCC
Confidence 3455555554
No 278
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=40.54 E-value=20 Score=25.60 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=26.4
Q ss_pred chhhHHHHHHHHHhhccc-ccCCCCcee--eEEe---eeeeeeeCCCCce
Q 044880 19 ASLRKQIKKMEVSQHSKY-FCEFCGKYA--VKRK---AVGIWGCKDCGKV 62 (91)
Q Consensus 19 ~slRK~v~kie~~q~~ky-~CpfCGk~~--VkR~---a~GIW~C~~Cg~~ 62 (91)
+.--+.+.++...=-.+| .||.|+.+. +.+. ..=.=+|..||..
T Consensus 79 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 79 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 333455555555555566 899999864 4442 2223379999754
No 279
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.39 E-value=14 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=17.9
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCceEecc
Q 044880 36 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 36 y~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGG 66 (91)
-.|..|++.- ++|. =||+.||..|=+.
T Consensus 15 ~~C~~C~~~F~~~~Rr----HHCR~CG~vfC~~ 43 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKR----RSCSNCGNSFCSR 43 (84)
T ss_dssp SSCSSSCCCCCSSSCC----EECSSSCCEECTT
T ss_pred CcCcCcCCccccchhh----hhhcCCCcEEChh
Confidence 3688888752 3333 3788888877664
No 280
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=40.17 E-value=9.4 Score=19.63 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=8.3
Q ss_pred hcccccC--CCCcee
Q 044880 33 HSKYFCE--FCGKYA 45 (91)
Q Consensus 33 ~~ky~Cp--fCGk~~ 45 (91)
..+|.|+ .||+.-
T Consensus 16 ~k~~~C~~~~C~k~F 30 (47)
T 1ncs_A 16 DKTFECLFPGCTKTF 30 (47)
T ss_dssp TTEEECCCTTCCCEE
T ss_pred CCCeECCCCCCCCcc
Confidence 3568885 587653
No 281
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=40.08 E-value=9.2 Score=25.80 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=9.5
Q ss_pred cccccCCCCcee
Q 044880 34 SKYFCEFCGKYA 45 (91)
Q Consensus 34 ~ky~CpfCGk~~ 45 (91)
..|+||.||.+-
T Consensus 70 R~Y~CpiCGATG 81 (106)
T 3alr_A 70 RQYKCPLCGATG 81 (106)
T ss_dssp GGCCCTTTCCCG
T ss_pred ccccCCCCCCcC
Confidence 359999999763
No 282
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.37 E-value=18 Score=20.48 Aligned_cols=35 Identities=23% Similarity=0.582 Sum_probs=24.6
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~Vk---R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++.... +...-.|| |..|+..+.++.|.+
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 48 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVK 48 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEE
T ss_pred CcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEe
Confidence 469999986432 22234676 889999999987764
No 283
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=39.30 E-value=4.3 Score=25.12 Aligned_cols=25 Identities=36% Similarity=0.832 Sum_probs=17.4
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCc
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCGK 61 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg~ 61 (91)
.|..||...--|.+.=||.|.-|-+
T Consensus 35 ~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 35 FCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp ECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred eecccCCEeeecCCeEEEEehhhhh
Confidence 5666776554467788999987743
No 284
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=39.15 E-value=21 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=20.8
Q ss_pred ccCCCCcee-eEEeeeeeeeeCCCCceEe
Q 044880 37 FCEFCGKYA-VKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 37 ~CpfCGk~~-VkR~a~GIW~C~~Cg~~~A 64 (91)
.||-|++.. |-=.|.-.=.|..|+.+++
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEE
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEe
Confidence 799999976 3333455558999998884
No 285
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=38.70 E-value=19 Score=26.74 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=17.7
Q ss_pred ccCCCCceeeEEe--eeeeeeeCCCC
Q 044880 37 FCEFCGKYAVKRK--AVGIWGCKDCG 60 (91)
Q Consensus 37 ~CpfCGk~~VkR~--a~GIW~C~~Cg 60 (91)
.||.||.+..+-. +-+.|-|..|-
T Consensus 247 pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCeEEEEEECCCCeEECCCCC
Confidence 7999998754322 45789999994
No 286
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=38.51 E-value=13 Score=19.40 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=9.3
Q ss_pred eeeeeCCCCce
Q 044880 52 GIWGCKDCGKV 62 (91)
Q Consensus 52 GIW~C~~Cg~~ 62 (91)
|-|.|..|+..
T Consensus 4 gDW~C~~C~~~ 14 (32)
T 2lk0_A 4 EDWLCNKCCLN 14 (32)
T ss_dssp SEEECTTTCCE
T ss_pred CCCCcCcCcCC
Confidence 77999999864
No 287
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=38.30 E-value=14 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=20.1
Q ss_pred CchhhHHHHHHHHHhhcccccCCC
Q 044880 18 GASLRKQIKKMEVSQHSKYFCEFC 41 (91)
Q Consensus 18 G~slRK~v~kie~~q~~ky~CpfC 41 (91)
+..+|.+|++++..++.=..|.-|
T Consensus 22 ~~~~~qqvkE~~~lr~ti~eC~~C 45 (45)
T 1mz9_A 22 RELLRQQVKEITFLKNTVMECDAC 45 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred hhHHHHHHHHHHHHHhhHhhccCC
Confidence 346899999999999987788766
No 288
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=38.06 E-value=11 Score=22.93 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=10.4
Q ss_pred hcccccCCCCcee
Q 044880 33 HSKYFCEFCGKYA 45 (91)
Q Consensus 33 ~~ky~CpfCGk~~ 45 (91)
..+|.|+.||+.-
T Consensus 23 ~kpy~C~~C~k~F 35 (88)
T 1x6f_A 23 NSTYQCKHCDSKL 35 (88)
T ss_dssp CSCEECSSSCCEE
T ss_pred CCCCcCCCCCCEe
Confidence 4679999999864
No 289
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.83 E-value=16 Score=22.31 Aligned_cols=27 Identities=30% Similarity=0.720 Sum_probs=19.2
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCceEecc
Q 044880 36 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 36 y~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGG 66 (91)
-.|..|++.- ++|. -||+.||..|=+.
T Consensus 20 ~~C~~C~~~Fs~~~Rr----HHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKEFSISRRK----HHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCBCBTTBCC----EECTTTCCEECSG
T ss_pred CcccCcCCcccCcccc----ccCCCCCCEEChH
Confidence 3699999863 3333 4899999888664
No 290
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=37.81 E-value=32 Score=27.48 Aligned_cols=34 Identities=24% Similarity=0.545 Sum_probs=23.6
Q ss_pred ccCCCCceeeEEe-----------eeeeeeeCCCCce----Eecccccc
Q 044880 37 FCEFCGKYAVKRK-----------AVGIWGCKDCGKV----KAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~VkR~-----------a~GIW~C~~Cg~~----~AGGAy~~ 70 (91)
.||.||+..+.|. =.=-+.|.+||+. ..+|+..|
T Consensus 14 ~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~p 62 (404)
T 2qkd_A 14 LCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD 62 (404)
T ss_dssp ECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCS
T ss_pred cCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCC
Confidence 6999998765444 2244899999965 45666555
No 291
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.22 E-value=13 Score=22.25 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=25.8
Q ss_pred cccccCCCCceeeE---Eeeeeeee-----eCCCCceEecccccc
Q 044880 34 SKYFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 34 ~ky~CpfCGk~~Vk---R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
....|+.|++...- +..--.|| |..|+..+.++.|..
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 68 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFF 68 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEE
T ss_pred cCCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEe
Confidence 34579999987532 22335786 889999998876654
No 292
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=37.11 E-value=21 Score=26.24 Aligned_cols=24 Identities=29% Similarity=0.640 Sum_probs=17.6
Q ss_pred ccCCCCceeeEEe--eeeeeeeCCCC
Q 044880 37 FCEFCGKYAVKRK--AVGIWGCKDCG 60 (91)
Q Consensus 37 ~CpfCGk~~VkR~--a~GIW~C~~Cg 60 (91)
.||.||.+..+-. +-+.|-|..|-
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCEeEEEEECCCCeEECCCCC
Confidence 6999998753322 45789999994
No 293
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=37.06 E-value=8.7 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=13.1
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCC
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
-.||.||...+.=. .|..||
T Consensus 31 ~~c~~cGe~~~~H~-----vc~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMKPPHT-----VCPECG 50 (60)
T ss_dssp EECTTTCCEECTTS-----CCTTTC
T ss_pred eECCCCCCeecceE-----EcCCCC
Confidence 37888888654422 277787
No 294
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=36.94 E-value=17 Score=21.70 Aligned_cols=26 Identities=35% Similarity=0.740 Sum_probs=18.1
Q ss_pred ccCCCCcee--eEEeeeeeeeeCCCCceEecc
Q 044880 37 FCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 37 ~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGG 66 (91)
.|..|++.- +.|. =||+.||..|=+.
T Consensus 13 ~C~~C~~~F~~~~Rr----HHCR~CG~v~C~~ 40 (73)
T 1vfy_A 13 ACMICSKKFSLLNRK----HHCRSCGGVFCQE 40 (73)
T ss_dssp BCTTTCCBCBTTBCC----EECTTTCCEECGG
T ss_pred cccCCCCccCCcccc----ccCCCCCEEEccc
Confidence 688898752 3333 4889998887664
No 295
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.85 E-value=23 Score=20.41 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=23.0
Q ss_pred ccCCCCceee-----EE--eeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV-----KR--KAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V-----kR--~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... .. .....|| |..|+..+.+..|.+
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~ 52 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT 52 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEE
T ss_pred CCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEe
Confidence 6899988644 22 2234776 888999888776654
No 296
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=36.78 E-value=21 Score=26.34 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=18.0
Q ss_pred cccCCCCceeeEEe--eeeeeeeCCCC
Q 044880 36 YFCEFCGKYAVKRK--AVGIWGCKDCG 60 (91)
Q Consensus 36 y~CpfCGk~~VkR~--a~GIW~C~~Cg 60 (91)
-.||.||.+..+-. +-+.+-|..|-
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36999998754322 45789999994
No 297
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.66 E-value=18 Score=22.61 Aligned_cols=28 Identities=32% Similarity=0.780 Sum_probs=18.2
Q ss_pred ccccCCCCcee--eEEeeeeeeeeCCCCceEecc
Q 044880 35 KYFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 35 ky~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGG 66 (91)
.-.|..|++.- ++|. =||+.||..|=+-
T Consensus 9 ~~~C~~C~~~F~~~~Rr----HHCR~CG~vfC~~ 38 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKE----YGCKNCGRAFCNG 38 (88)
T ss_dssp CSBCTTTCCBCCSSSCE----EECSSSCCEEETT
T ss_pred CCCCcCcCCcccCcccc----ccCCCCCCEEChh
Confidence 34688888752 3333 3788888877654
No 298
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=36.66 E-value=20 Score=20.53 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=23.6
Q ss_pred ccCCCCceee------E--Eeeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV------K--RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V------k--R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... . +.....|| |..|+..+.|+.|.+
T Consensus 17 ~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 63 (77)
T 2egq_A 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVF 63 (77)
T ss_dssp CCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCE
T ss_pred cCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEe
Confidence 6999998654 2 22334774 889999998887654
No 299
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=36.63 E-value=17 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=23.0
Q ss_pred HhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 044880 31 SQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 60 (91)
Q Consensus 31 ~q~~ky~CpfCGk~~VkR~a--~GIW~C~~Cg 60 (91)
+....-.|.-||.......+ .||..|-.|.
T Consensus 21 ~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~Cs 52 (140)
T 2olm_A 21 GLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCS 52 (140)
T ss_dssp TSGGGGSCTTTCSSCCCEEETTTTEEECHHHH
T ss_pred cCcCCCcCCCCCCCCCCceeeccCEEEchhcc
Confidence 34456789999998877665 4999998884
No 300
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=36.55 E-value=22 Score=26.30 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=18.3
Q ss_pred ccCCCCceeeEEe--eeeeeeeCCCCc
Q 044880 37 FCEFCGKYAVKRK--AVGIWGCKDCGK 61 (91)
Q Consensus 37 ~CpfCGk~~VkR~--a~GIW~C~~Cg~ 61 (91)
.||.||.+..+-. +-+.+-|..|-.
T Consensus 244 pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCEeeEEEECCCceEECCCCCC
Confidence 6999998753322 457899999954
No 301
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=36.05 E-value=9.4 Score=24.00 Aligned_cols=27 Identities=30% Similarity=0.984 Sum_probs=20.0
Q ss_pred hcccccCCCCceeeEEeeeeeeeeCCCC
Q 044880 33 HSKYFCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
.....|..||+.+.- .-.|++.|..|.
T Consensus 2 ~~~~~C~VCg~~a~g-~hyGv~sC~aCk 28 (84)
T 1hcq_A 2 KETRYCAVCNDYASG-YHYGVWSCEGCK 28 (84)
T ss_dssp CCCCBCTTTCSBCCE-EETTEEECHHHH
T ss_pred CCCCcCcEECCCCCC-eeeCccchHHhh
Confidence 345679999987643 457889998884
No 302
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.00 E-value=21 Score=20.82 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=22.9
Q ss_pred ccCCCCceee---EEeeeeeee-----eCCCCceEecccc
Q 044880 37 FCEFCGKYAV---KRKAVGIWG-----CKDCGKVKAGGAY 68 (91)
Q Consensus 37 ~CpfCGk~~V---kR~a~GIW~-----C~~Cg~~~AGGAy 68 (91)
.|+.|++... -+.....|| |..|++.+..|.+
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~ 56 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDR 56 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSC
T ss_pred cCccccCEeccceEEECCceeCccCCccccCCCCCCCCCE
Confidence 7999998652 223346787 8889999886654
No 303
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=35.84 E-value=23 Score=26.29 Aligned_cols=43 Identities=28% Similarity=0.511 Sum_probs=29.5
Q ss_pred ceeeeeccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEecccc
Q 044880 4 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 68 (91)
Q Consensus 4 tkkvgi~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGAy 68 (91)
.+-|||.+||-+ ...+-.|++|... ..|+.+.++.=| -|||.|
T Consensus 148 ~~lvGi~lr~~~----------------~~~k~~CslC~~~----~~VsLf~a~~ag--~a~~~y 190 (222)
T 4adn_A 148 KQLKGLYGEISN----------------QVVKGFCTICNKE----SNVSLFMKKSKT--NSDGQY 190 (222)
T ss_dssp CCEEEEEEEECS----------------CCEEEECTTTCSE----EEEEEEEEECCC--CTTSCC
T ss_pred CeEEEEEEecCC----------------CCcCCccccCCCC----CcEEEEEEecCC--CCCCCc
Confidence 456899998876 1236789999985 488888886322 245554
No 304
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.45 E-value=25 Score=21.01 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=24.8
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~Vk---R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++.... ...--.|| |..|+..+.++.|..
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 68 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVE 68 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEE
T ss_pred CCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEe
Confidence 479999996522 12335674 999999999887754
No 305
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=35.38 E-value=23 Score=26.23 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=18.9
Q ss_pred cccCCCCceeeEEe--eeeeeeeCCCCc
Q 044880 36 YFCEFCGKYAVKRK--AVGIWGCKDCGK 61 (91)
Q Consensus 36 y~CpfCGk~~VkR~--a~GIW~C~~Cg~ 61 (91)
-.||.||.+..+-. +-+.|-|..|-.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 36999998754322 457899999964
No 306
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.15 E-value=12 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=16.6
Q ss_pred ccccCCCCcee--------eEEeeeeeeeeC
Q 044880 35 KYFCEFCGKYA--------VKRKAVGIWGCK 57 (91)
Q Consensus 35 ky~CpfCGk~~--------VkR~a~GIW~C~ 57 (91)
...|.|||.+. |+..+.-.|-|.
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcs 34 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLFFCS 34 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEEESS
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEEEEC
Confidence 46899998764 666666677665
No 307
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=35.00 E-value=11 Score=20.86 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=5.5
Q ss_pred eeeCCCCceEe
Q 044880 54 WGCKDCGKVKA 64 (91)
Q Consensus 54 W~C~~Cg~~~A 64 (91)
+.|..||..|.
T Consensus 10 ~~C~~C~~~i~ 20 (39)
T 2i5o_A 10 VPCEKCGSLVP 20 (39)
T ss_dssp EECTTTCCEEE
T ss_pred cccccccCcCC
Confidence 44555555544
No 308
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=34.99 E-value=14 Score=18.85 Aligned_cols=9 Identities=44% Similarity=0.958 Sum_probs=7.6
Q ss_pred ccCCCCcee
Q 044880 37 FCEFCGKYA 45 (91)
Q Consensus 37 ~CpfCGk~~ 45 (91)
.||.|++..
T Consensus 5 ~C~~C~k~V 13 (31)
T 1zfo_A 5 NCARCGKIV 13 (31)
T ss_dssp BCSSSCSBC
T ss_pred cCCccCCEE
Confidence 699999975
No 309
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.94 E-value=17 Score=21.06 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=23.6
Q ss_pred ccCCCCceeeE---Eeeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~Vk---R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++.... +.....|| |..|+..+.|..|.+
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTS 58 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEE
T ss_pred cCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEe
Confidence 69999986422 22335775 889999998876654
No 310
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.79 E-value=11 Score=24.59 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhhccc----ccCCCCcee-eEEeeeeeeeeCCCCceEe
Q 044880 22 RKQIKKMEVSQHSKY----FCEFCGKYA-VKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 22 RK~v~kie~~q~~ky----~CpfCGk~~-VkR~a~GIW~C~~Cg~~~A 64 (91)
||.-.++.+..-.-| .||-|++.. |--.+.-.=.|..|+.+++
T Consensus 19 ~khK~k~Lv~~PnS~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 19 LKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp --------------CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCS
T ss_pred hhhhheeeccCCCCcEeEEECCCCCCeeEEEecCCcEEEccCCCCEee
Confidence 444455555544444 899999975 4445556668999998764
No 311
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=34.77 E-value=5.3 Score=25.70 Aligned_cols=11 Identities=18% Similarity=0.917 Sum_probs=8.7
Q ss_pred hcccccCCCCc
Q 044880 33 HSKYFCEFCGK 43 (91)
Q Consensus 33 ~~ky~CpfCGk 43 (91)
-..|.||+|.+
T Consensus 28 f~dy~Cp~C~~ 38 (184)
T 4dvc_A 28 FFSFYCPHCNT 38 (184)
T ss_dssp EECTTCHHHHH
T ss_pred EECCCCHhHHH
Confidence 45799999965
No 312
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.70 E-value=28 Score=21.31 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=20.7
Q ss_pred ccCCCCcee-eEEeeeeeeeeCCCCceEe
Q 044880 37 FCEFCGKYA-VKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 37 ~CpfCGk~~-VkR~a~GIW~C~~Cg~~~A 64 (91)
.||-|++.. |-=.+.-.=.|..|+.+++
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEE
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEe
Confidence 799999976 3333445558999998875
No 313
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=34.57 E-value=22 Score=20.74 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=11.0
Q ss_pred eeeeCCCCceEec
Q 044880 53 IWGCKDCGKVKAG 65 (91)
Q Consensus 53 IW~C~~Cg~~~AG 65 (91)
.|.|..||+++-+
T Consensus 3 ~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 3 KWQCVVCGFIYDE 15 (55)
T ss_dssp EEEETTTCCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5999999988765
No 314
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=34.34 E-value=11 Score=23.16 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=15.1
Q ss_pred cccCCCCcee--------eEEeeeeeeeeC
Q 044880 36 YFCEFCGKYA--------VKRKAVGIWGCK 57 (91)
Q Consensus 36 y~CpfCGk~~--------VkR~a~GIW~C~ 57 (91)
..|.|||.+. |+..+.-.|-|.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcs 33 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCS 33 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESC
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEEC
Confidence 6799999875 555555566654
No 315
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=33.97 E-value=21 Score=24.74 Aligned_cols=24 Identities=33% Similarity=0.911 Sum_probs=17.4
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCce
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCGKV 62 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg~~ 62 (91)
.|+.||.+-+. .+ ..=+|..||.+
T Consensus 142 ~~~~~g~~m~~-~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 142 LCSNCKTEMVR-EG-DILKCPECGRV 165 (179)
T ss_dssp BCTTTCCBCEE-CS-SSEECSSSCCE
T ss_pred cccccCCceEE-CC-CEEECCCCCCE
Confidence 68888877665 44 66688888853
No 316
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=33.76 E-value=9 Score=31.93 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHhhccc--------ccCCCCceee-EEeeeeeeeeCCCCc
Q 044880 20 SLRKQIKKMEVSQHSKY--------FCEFCGKYAV-KRKAVGIWGCKDCGK 61 (91)
Q Consensus 20 slRK~v~kie~~q~~ky--------~CpfCGk~~V-kR~a~GIW~C~~Cg~ 61 (91)
.+++.|+.+.. .-.| .||.||-... ..... -|.|.+||.
T Consensus 519 a~~~lv~~~~~--~i~Y~~~n~~~~~C~~CGy~~~~~~~~~-~~~CP~Cg~ 566 (605)
T 1h7b_A 519 GLEAVWDYAAQ--HLDYFGVNMPVDKCFTCGSTHEMTPTEN-GFVCSICGE 566 (605)
T ss_dssp HHHHHHHHHHH--HCSEEEEECCEEET------------------------
T ss_pred HHHHHHHHHHh--CCCeEEeCCCCccCcccCCcCccCcccc-CCcCCCCCC
Confidence 56677777654 3444 7999996542 22222 399999995
No 317
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.69 E-value=13 Score=21.82 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=24.9
Q ss_pred ccccCCCCceeeE---Eeeeeeee-----eCCCCceEecccccc
Q 044880 35 KYFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 35 ky~CpfCGk~~Vk---R~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.-.|+.|++.... +...-.|| |..|+..+.+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFF 58 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEE
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEe
Confidence 4579999986532 22335786 889999988776654
No 318
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.65 E-value=19 Score=25.86 Aligned_cols=27 Identities=30% Similarity=0.701 Sum_probs=19.1
Q ss_pred ccCCCCcee--eEEeeeeeeeeCCCCceEeccc
Q 044880 37 FCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 37 ~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGGA 67 (91)
.|..|++.- ..|. -||+.||..|=+.-
T Consensus 166 ~C~~C~~~F~~~~Rr----hHCR~CG~v~C~~C 194 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRK----HHCRACGQIFCGKC 194 (226)
T ss_dssp BCTTTCCBCBTTBCC----EECTTTCCEECTTT
T ss_pred CCcCcCCCCCccccc----cccCCCcCEeChhh
Confidence 799998752 3333 48999998886643
No 319
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=33.53 E-value=12 Score=24.83 Aligned_cols=23 Identities=13% Similarity=0.429 Sum_probs=19.3
Q ss_pred eeeeeeeeCCCCceEeccccccc
Q 044880 49 KAVGIWGCKDCGKVKAGGAYTLN 71 (91)
Q Consensus 49 ~a~GIW~C~~Cg~~~AGGAy~~~ 71 (91)
.+.-.-.|..|+..+|++-|.|.
T Consensus 66 ~~s~~~~C~nC~R~vaa~RFApH 88 (99)
T 3mhs_C 66 ESSQYIHCENCGRDVSANRLAAH 88 (99)
T ss_dssp TTSCEEECTTTCCEEEGGGHHHH
T ss_pred cCCCeEECCCCCCCchhhhhHHH
Confidence 45667799999999999998774
No 320
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=33.18 E-value=22 Score=25.30 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 044880 21 LRKQIKKMEVSQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 60 (91)
Q Consensus 21 lRK~v~kie~~q~~ky~CpfCGk~~VkR~a--~GIW~C~~Cg 60 (91)
..+.+.++-......-.|.-||.......+ .||..|-.|.
T Consensus 8 a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CS 49 (163)
T 3sub_A 8 AVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCS 49 (163)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred HHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhh
Confidence 344455554444456789999998877765 4999999984
No 321
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=33.16 E-value=13 Score=19.36 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=6.7
Q ss_pred cccccCCCCc
Q 044880 34 SKYFCEFCGK 43 (91)
Q Consensus 34 ~ky~CpfCGk 43 (91)
++|.||.|..
T Consensus 2 ~k~~CpvCk~ 11 (28)
T 2jvx_A 2 SDFCCPKCQY 11 (28)
T ss_dssp CCEECTTSSC
T ss_pred CcccCccccc
Confidence 4677777764
No 322
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=33.09 E-value=13 Score=23.30 Aligned_cols=12 Identities=42% Similarity=0.813 Sum_probs=6.6
Q ss_pred eeeeCC--CCceEe
Q 044880 53 IWGCKD--CGKVKA 64 (91)
Q Consensus 53 IW~C~~--Cg~~~A 64 (91)
.+.|.. |++.|.
T Consensus 90 ~~~C~~~~C~~~f~ 103 (155)
T 2rpc_A 90 PFPCPFPGCGKIFA 103 (155)
T ss_dssp SEECSCTTTCCEES
T ss_pred cccCCcCCCCCccC
Confidence 356655 666553
No 323
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=33.04 E-value=16 Score=21.27 Aligned_cols=11 Identities=27% Similarity=1.189 Sum_probs=9.1
Q ss_pred eeeeeCCCCce
Q 044880 52 GIWGCKDCGKV 62 (91)
Q Consensus 52 GIW~C~~Cg~~ 62 (91)
.-|+|.+|++.
T Consensus 12 D~WkC~~C~~~ 22 (46)
T 2c6a_A 12 DYWKCTSCNEM 22 (46)
T ss_dssp GCEECTTTCCE
T ss_pred ceEeccccccc
Confidence 77999999853
No 324
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.99 E-value=19 Score=22.07 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=19.0
Q ss_pred ccccCCCCcee--eEEeeeeeeeeCCCCceEecc
Q 044880 35 KYFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 35 ky~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGG 66 (91)
.-.|..|++.- +.|. =||+.||..|=+-
T Consensus 21 ~~~C~~C~~~Fs~~~Rr----HHCR~CG~v~C~~ 50 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRR----HHCRNCGYVLCGD 50 (84)
T ss_dssp CCBCTTTCCBCCTTSCC----EECTTTCCEECTG
T ss_pred CCCCcCcCCccccchhc----ccccCCCcEEChH
Confidence 34688888762 3333 4889998887654
No 325
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=32.86 E-value=40 Score=19.57 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=18.5
Q ss_pred cccCCCCceeeEEeeeeeeeeC--CCCceE
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCK--DCGKVK 63 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~--~Cg~~~ 63 (91)
..||.|...-.--. |.=.|. .|+..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 47999998743322 767899 898544
No 326
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=32.59 E-value=27 Score=20.15 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.7
Q ss_pred eeeeCCCCceEec
Q 044880 53 IWGCKDCGKVKAG 65 (91)
Q Consensus 53 IW~C~~Cg~~~AG 65 (91)
.|.|..||++.-+
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5999999988754
No 327
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=31.68 E-value=19 Score=30.54 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=18.6
Q ss_pred cccccCCCCceeeEEeeeeeeeeC
Q 044880 34 SKYFCEFCGKYAVKRKAVGIWGCK 57 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~a~GIW~C~ 57 (91)
-+-.||.||.+.++-.+--.|.|.
T Consensus 404 ~P~~CP~Cgs~l~~~~~~~~~rC~ 427 (671)
T 2owo_A 404 FPTHCPVCGSDVERVEGEAVARCT 427 (671)
T ss_dssp CCSBCTTTCCBEEECTTCSCEEEC
T ss_pred CCCCCCCCCCEeEEecCCEEEECC
Confidence 456899999988864455678887
No 328
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.51 E-value=22 Score=21.75 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=19.3
Q ss_pred hcccccCCCCcee-eEEeeeeeeeeCCCCceEecc
Q 044880 33 HSKYFCEFCGKYA-VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 33 ~~ky~CpfCGk~~-VkR~a~GIW~C~~Cg~~~AGG 66 (91)
..+-.|..|++.. +- -.+| .||.+|=+-
T Consensus 13 ~~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVM-----GFKC-KCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTS-----CEEC-TTSCEECSS
T ss_pred CcCCcChhhCCccccc-----CeEe-ecCCEeccc
Confidence 4456899998752 11 2689 799998664
No 329
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.37 E-value=13 Score=26.44 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=16.3
Q ss_pred cccCCCCcee--------eEEeeeeeeeeC
Q 044880 36 YFCEFCGKYA--------VKRKAVGIWGCK 57 (91)
Q Consensus 36 y~CpfCGk~~--------VkR~a~GIW~C~ 57 (91)
+.|.|||.+. |+..+.-.|-|.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcs 33 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLN 33 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESS
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEec
Confidence 6899999875 666666677775
No 330
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=30.33 E-value=27 Score=22.17 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=12.2
Q ss_pred eeeeeeCCCCceEec
Q 044880 51 VGIWGCKDCGKVKAG 65 (91)
Q Consensus 51 ~GIW~C~~Cg~~~AG 65 (91)
..+|.|..||+++-+
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 357999999998765
No 331
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=30.13 E-value=27 Score=19.03 Aligned_cols=25 Identities=32% Similarity=0.911 Sum_probs=17.9
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 34 SKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
.+-.|.+|++... -| .+|..|+..+
T Consensus 13 ~pt~C~~C~~~l~----qG-~~C~~C~~~~ 37 (52)
T 1faq_A 13 KLAFCDICQKFLL----NG-FRCQTCGYKF 37 (52)
T ss_dssp SCEECTTSSSEEC----SE-EECTTTTCCB
T ss_pred CCcCCCCcccccc----cC-CEeCCCCCeE
Confidence 4567999988653 34 4999998654
No 332
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.92 E-value=17 Score=21.53 Aligned_cols=35 Identities=23% Similarity=0.556 Sum_probs=24.6
Q ss_pred ccccCCCCceee--EEe--eeeeee-----eCCCCceEeccccc
Q 044880 35 KYFCEFCGKYAV--KRK--AVGIWG-----CKDCGKVKAGGAYT 69 (91)
Q Consensus 35 ky~CpfCGk~~V--kR~--a~GIW~-----C~~Cg~~~AGGAy~ 69 (91)
.-.|+.|++... .++ .--+|| |..|+..+.++.|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~ 58 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYE 58 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEE
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCcee
Confidence 347999998753 222 224785 88999999988875
No 333
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=29.76 E-value=39 Score=23.50 Aligned_cols=30 Identities=27% Similarity=0.856 Sum_probs=18.2
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCCCceEecc
Q 044880 34 SKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGG 66 (91)
++|.|+.|.=-. ..-.|+||..||---.||
T Consensus 82 ~~Y~C~~C~l~d---~~k~~yHC~~CgiCR~G~ 111 (143)
T 2dkt_A 82 GEYYCSICHLFD---KDKRQYHCESCGICRIGP 111 (143)
T ss_dssp CSEECSSSCCEE---CSSSEEEETTTTEEEESC
T ss_pred eeeEeceeeccc---CCCceecCCCCCceeccC
Confidence 344555553221 345788888888777775
No 334
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.72 E-value=6.2 Score=24.98 Aligned_cols=29 Identities=31% Similarity=0.637 Sum_probs=19.3
Q ss_pred eEEeeeeeeeeCCCCce------------EecccccccccH
Q 044880 46 VKRKAVGIWGCKDCGKV------------KAGGAYTLNTAS 74 (91)
Q Consensus 46 VkR~a~GIW~C~~Cg~~------------~AGGAy~~~T~~ 74 (91)
+..+..|-|.|..|-.. -+...|+++|++
T Consensus 50 l~~~P~g~W~C~~C~~~~~~~~~~~~Gf~~~~~~y~l~~~~ 90 (92)
T 2e6r_A 50 LPEIPRGIWRCPKCILAECKQPPEAFGFEQATQEYSLSGPS 90 (92)
T ss_dssp CSSCCSSCCCCHHHHHHHHSCCSSCCSCCCCCCCCCCSCCS
T ss_pred cccCCCCCcCCccCcCccccCCccccChhhcCCceeecccC
Confidence 55667799999999542 233567776654
No 335
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=29.68 E-value=5.1 Score=27.43 Aligned_cols=12 Identities=25% Similarity=0.265 Sum_probs=9.4
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
-..|.||+|.+-
T Consensus 21 f~D~~Cp~C~~~ 32 (182)
T 3gn3_A 21 FLEPTCPFSVKA 32 (182)
T ss_dssp EECTTCHHHHHH
T ss_pred EECCCCHhHHHH
Confidence 457899999863
No 336
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.58 E-value=28 Score=22.38 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=12.2
Q ss_pred eeeeeeCCCCceEec
Q 044880 51 VGIWGCKDCGKVKAG 65 (91)
Q Consensus 51 ~GIW~C~~Cg~~~AG 65 (91)
...|.|..||+++-+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 457999999998765
No 337
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=29.54 E-value=14 Score=26.29 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=16.4
Q ss_pred ccccCCCCcee--------eEEeeeeeeeeC
Q 044880 35 KYFCEFCGKYA--------VKRKAVGIWGCK 57 (91)
Q Consensus 35 ky~CpfCGk~~--------VkR~a~GIW~C~ 57 (91)
.+.|.|||.+. |+..+.-.|-|.
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcs 35 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFFFLT 35 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEEESC
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEEEEc
Confidence 46799999875 555566667665
No 338
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.40 E-value=48 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.500 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHh-----hcccccCCCCcee
Q 044880 21 LRKQIKKMEVSQ-----HSKYFCEFCGKYA 45 (91)
Q Consensus 21 lRK~v~kie~~q-----~~ky~CpfCGk~~ 45 (91)
||+...+++... .....|..|+++.
T Consensus 36 i~kL~~~l~~~k~~~~~~~~~~C~~C~~~~ 65 (134)
T 1zbd_B 36 IGRLVDRLETMRKNVAGDGVNRCILCGEQL 65 (134)
T ss_dssp HHHHHHHHHHHHHTCCSCSSSBCSSSCCBC
T ss_pred HHHHHHHHHHHHHHhccCCCccccccCCCc
Confidence 455555555443 4556788887765
No 339
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.27 E-value=12 Score=23.59 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=31.1
Q ss_pred eccCCccccCchhhHHHHHHHHHhhcccccCCCCceeeEEeeeeeeeeCCCCceEeccc
Q 044880 9 IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 9 i~gk~G~RYG~slRK~v~kie~~q~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGA 67 (91)
+.|-=|++-|.++-.- ++..+..+..|..|++..-- . -.+| .|+.+|-+--
T Consensus 2 ~~~~~~~~~~~~~~~~---~~~~k~~~~RC~~C~kkvgL-~---~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 2 SSGSSGTRGGDSAAAP---LDPPKSTATRCLSCNKKVGV-T---GFKC-RCGSTFCGTH 52 (74)
T ss_dssp CCCCCCCCSSCCCCCC---SCCTTCCCCBCSSSCCBCTT-T---CEEC-TTSCEECTTT
T ss_pred CCCCCCCCCCcccccc---cccCcccCccchhhcCcccc-c---ceEe-ccCCEecccc
Confidence 3445566666554322 34456677889999875211 0 2689 6999997643
No 340
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=29.11 E-value=16 Score=26.02 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=16.1
Q ss_pred ccccCCCCcee--------eEEeeeeeeeeC
Q 044880 35 KYFCEFCGKYA--------VKRKAVGIWGCK 57 (91)
Q Consensus 35 ky~CpfCGk~~--------VkR~a~GIW~C~ 57 (91)
.+.|.|||.+. |+..+.-.|-|.
T Consensus 3 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcs 33 (155)
T 3izc_Z 3 VEIDSFSGAKIYPGRGTLFVRGDSKIFRFQN 33 (155)
T ss_dssp CEECTTTCSEECTTCCEEEECTTCCEEEESS
T ss_pred eeEecCcCCcccCCCCeEEEecCCCEEEEEc
Confidence 36799999865 555566666665
No 341
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=29.03 E-value=15 Score=19.28 Aligned_cols=12 Identities=42% Similarity=1.129 Sum_probs=9.1
Q ss_pred eeeeeeCCCCce
Q 044880 51 VGIWGCKDCGKV 62 (91)
Q Consensus 51 ~GIW~C~~Cg~~ 62 (91)
.|=|.|..|+..
T Consensus 4 ~gDW~C~~C~~~ 15 (33)
T 2k1p_A 4 ANDWQCKTCSNV 15 (33)
T ss_dssp SSSCBCSSSCCB
T ss_pred CCCcccCCCCCc
Confidence 467999999743
No 342
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=28.92 E-value=32 Score=18.47 Aligned_cols=27 Identities=37% Similarity=0.897 Sum_probs=18.4
Q ss_pred cccccCCCCceee--EEeeeeeeeeCCCCceE
Q 044880 34 SKYFCEFCGKYAV--KRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~V--kR~a~GIW~C~~Cg~~~ 63 (91)
.+-.|..|++... .++ | -+|..|+..+
T Consensus 10 ~pt~C~~C~~~l~g~~~q--g-~~C~~C~~~~ 38 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQ--G-LKCEDCGMNV 38 (50)
T ss_dssp SCCBCTTTCCBCCSSSSC--E-EEETTTCCEE
T ss_pred CCCCcCCCCceeeccCCc--c-CEeCCCCCeE
Confidence 4557999988752 233 3 4899998654
No 343
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.78 E-value=27 Score=19.73 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=24.0
Q ss_pred cccCCCCceee-----EEeeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~V-----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++... -+..-..|| |..|+..+.|..|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYA 50 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEE
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEe
Confidence 46999998643 222335774 889999998776654
No 344
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=28.67 E-value=11 Score=31.33 Aligned_cols=26 Identities=15% Similarity=-0.103 Sum_probs=13.2
Q ss_pred cCCCC-ceeeEEe-eee--eeeeC---CCCceE
Q 044880 38 CEFCG-KYAVKRK-AVG--IWGCK---DCGKVK 63 (91)
Q Consensus 38 CpfCG-k~~VkR~-a~G--IW~C~---~Cg~~~ 63 (91)
||.|| ...+.|. ..| .|.|. .|+.++
T Consensus 575 CP~Cg~g~l~~r~~k~G~~f~gCs~yp~C~f~~ 607 (633)
T 2gai_A 575 YLKCECGKTRSVKNDEIAVIDDGKIFLGRKDSE 607 (633)
T ss_dssp EEECSSSCCEECCTTSBCEEETTEEEC------
T ss_pred CcccCCCcceeecccCCCeEEeCCCCcCCCCee
Confidence 99998 6655543 223 68885 387664
No 345
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.46 E-value=28 Score=22.89 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=17.6
Q ss_pred eeeeeCCCCceEecccccccccHHH
Q 044880 52 GIWGCKDCGKVKAGGAYTLNTASAV 76 (91)
Q Consensus 52 GIW~C~~Cg~~~AGGAy~~~T~~~~ 76 (91)
=+.+|.+||+-|-| -|.|.-.+-+
T Consensus 50 F~FkCP~CgEEFyG-~~Lp~~EaeK 73 (95)
T 2k5c_A 50 FVFKCPVCGEEFYG-KTLPRREAEK 73 (95)
T ss_dssp SEEECTTTCCEEET-TSSCTTTHHH
T ss_pred HhhcCCCccHHHhc-ccCChHHHHH
Confidence 36899999999986 4666555443
No 346
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.35 E-value=23 Score=24.52 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=15.6
Q ss_pred eeeeeeeCCCCce----Eecccccccc
Q 044880 50 AVGIWGCKDCGKV----KAGGAYTLNT 72 (91)
Q Consensus 50 a~GIW~C~~Cg~~----~AGGAy~~~T 72 (91)
..++|.|.-|-+. ...|+|-++.
T Consensus 105 ~~~~W~C~vC~k~rel~~kSGeWf~~~ 131 (153)
T 2zet_C 105 EEQGWLCDPCHLARVVKIGSLEWYYQH 131 (153)
T ss_dssp SSSSCEEHHHHHHHHHHHHHCHHHHHH
T ss_pred CCCcEeeHHHHHHHHHHHhccHHHHHH
Confidence 4578888888753 4567776653
No 347
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=28.16 E-value=23 Score=20.27 Aligned_cols=23 Identities=30% Similarity=0.771 Sum_probs=16.8
Q ss_pred hcccccCCCCceeeEEeeeeeeeeCCCC
Q 044880 33 HSKYFCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
+..|.|..|++. +.+ -|+|..|.
T Consensus 4 ~~~~~Cd~C~~~-ig~----R~~C~~C~ 26 (52)
T 1tot_A 4 RFVYTCNECKHH-VET----RWHCTVCE 26 (52)
T ss_dssp SSCEEETTTTEE-ESS----EEEESSSS
T ss_pred cCEEECCCCCCC-Ccc----eEEcCCCC
Confidence 345789999987 321 29999995
No 348
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=28.13 E-value=22 Score=23.21 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=19.1
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCC
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
.-.|..||..+.- .-.|++.|..|.
T Consensus 7 ~~~C~VCg~~a~g-~hyGv~sC~aCk 31 (105)
T 1r4i_A 7 QKTCLICGDEASG-AHYGALTCGSCK 31 (105)
T ss_dssp CCBCSSSCSBEEE-EETTEEEEHHHH
T ss_pred CCCCcEeCCCCCc-eEeCCcchhhhh
Confidence 4579999987654 457899999883
No 349
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.08 E-value=18 Score=19.46 Aligned_cols=10 Identities=30% Similarity=0.756 Sum_probs=7.4
Q ss_pred ccccCCCCce
Q 044880 35 KYFCEFCGKY 44 (91)
Q Consensus 35 ky~CpfCGk~ 44 (91)
-+.||.|-++
T Consensus 5 GFiCP~C~~~ 14 (34)
T 3mjh_B 5 GFICPQCMKS 14 (34)
T ss_dssp EEECTTTCCE
T ss_pred ccCCcHHHHH
Confidence 3788988765
No 350
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=27.98 E-value=23 Score=22.77 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=20.3
Q ss_pred hcccccCCCCceeeEEeeeeeeeeCCCCceEeccc
Q 044880 33 HSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~AGGA 67 (91)
..+-.|.+|++...- ..| .+|+ ||..|-+--
T Consensus 23 ~~~~rC~~C~kkvgl--~~~-f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTGL--ATS-FECR-CGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCSS--SSC-EECT-TCCEECTTT
T ss_pred ccCccchhhCCeecc--cCC-eEcC-CCCEecccC
Confidence 445689999875311 113 6996 999997643
No 351
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.97 E-value=25 Score=19.94 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=24.1
Q ss_pred cccCCCCceeeE-----E--eeeeeee-----eCCCCceEecccccc
Q 044880 36 YFCEFCGKYAVK-----R--KAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~Vk-----R--~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++.... . .....|| |..|+..+.+..|.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~ 52 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLT 52 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEE
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEe
Confidence 469999986542 1 2234785 889999998877654
No 352
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.86 E-value=24 Score=21.89 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=6.0
Q ss_pred eeeeCC--CCceE
Q 044880 53 IWGCKD--CGKVK 63 (91)
Q Consensus 53 IW~C~~--Cg~~~ 63 (91)
.+.|.. |++.|
T Consensus 97 ~~~C~~~~C~~~f 109 (155)
T 2gli_A 97 PYMCEHEGCSKAF 109 (155)
T ss_dssp CEECCSTTCCCEE
T ss_pred CeeCCCCCCCCcc
Confidence 355554 55555
No 353
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=27.77 E-value=41 Score=22.28 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=24.5
Q ss_pred hhcccccCCCCceeeEEe-------eeeeeeeCCCCce
Q 044880 32 QHSKYFCEFCGKYAVKRK-------AVGIWGCKDCGKV 62 (91)
Q Consensus 32 q~~ky~CpfCGk~~VkR~-------a~GIW~C~~Cg~~ 62 (91)
+...|+|..|+.-+.+.. ++=|=+|..|..-
T Consensus 10 ~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 10 MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 455799999998877766 6677899999853
No 354
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.64 E-value=32 Score=21.04 Aligned_cols=29 Identities=24% Similarity=0.577 Sum_probs=19.7
Q ss_pred hhcccccCCCCcee-eEEeeeeeeeeCCCCceEecc
Q 044880 32 QHSKYFCEFCGKYA-VKRKAVGIWGCKDCGKVKAGG 66 (91)
Q Consensus 32 q~~ky~CpfCGk~~-VkR~a~GIW~C~~Cg~~~AGG 66 (91)
+..+-.|..|++.. +- -.+| .||.+|=+-
T Consensus 12 k~~~~rC~~C~kkvgl~-----~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLT-----GFMC-RCGTTFCGS 41 (64)
T ss_dssp CSSCCCCTTTCCCCCTT-----CEEC-SSSCEECTT
T ss_pred CCcCCcChhhCCccCcc-----CEEe-ecCCEeccc
Confidence 34567899998752 11 2689 599998664
No 355
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.57 E-value=18 Score=22.77 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=10.5
Q ss_pred HhhcccccCC--CCce
Q 044880 31 SQHSKYFCEF--CGKY 44 (91)
Q Consensus 31 ~q~~ky~Cpf--CGk~ 44 (91)
+-..+|.|++ ||+-
T Consensus 23 sGEKPYkC~~~~CgKa 38 (73)
T 1x3c_A 23 SPYRPYRCVHQGCFAA 38 (73)
T ss_dssp CSSCSCBCCSTTCCCB
T ss_pred cCCCCeECCCCCcChh
Confidence 4567899976 9875
No 356
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.35 E-value=30 Score=25.97 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=21.1
Q ss_pred cccccCCCCcee--eEEeeeeeeeeCCCCceEeccc
Q 044880 34 SKYFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 34 ~ky~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGGA 67 (91)
.+-.|..|++.- +-+++ .+|+.||..+=..-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C 388 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKEC 388 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGG
T ss_pred CCCCCccccchhceeCCCC---CCCCCCcCccchhh
Confidence 345899998864 33343 58999998876543
No 357
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=26.61 E-value=25 Score=21.03 Aligned_cols=11 Identities=36% Similarity=1.168 Sum_probs=8.5
Q ss_pred eeeeeCCCCce
Q 044880 52 GIWGCKDCGKV 62 (91)
Q Consensus 52 GIW~C~~Cg~~ 62 (91)
-.|+|.+|++.
T Consensus 10 D~WkC~~C~k~ 20 (53)
T 2cr8_A 10 DEWQCTECKKF 20 (53)
T ss_dssp CCEECSSSCCE
T ss_pred ceeeccccccc
Confidence 35999999853
No 358
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=26.49 E-value=18 Score=25.88 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=16.6
Q ss_pred ccccCCCCcee--------eEEeeeeeeeeC
Q 044880 35 KYFCEFCGKYA--------VKRKAVGIWGCK 57 (91)
Q Consensus 35 ky~CpfCGk~~--------VkR~a~GIW~C~ 57 (91)
.+.|.|||.+. |+..+.-.|-|.
T Consensus 5 ~e~CsFcG~~IyPG~G~~fVr~Dgkvf~Fcs 35 (162)
T 3iz5_Z 5 TELCRFSGQKIYPGKGIRFIRADSQVFLFAN 35 (162)
T ss_dssp CEECTTTCSEECSSCSEEEECTTSCEEEECS
T ss_pred EEEecCcCCcccCCCCeEEEecCCCEEEEEC
Confidence 46899999875 565566677765
No 359
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=26.39 E-value=51 Score=21.79 Aligned_cols=32 Identities=13% Similarity=0.459 Sum_probs=22.2
Q ss_pred hhcccccCCCCcee--eEEee-eeeeeeC---CCCceE
Q 044880 32 QHSKYFCEFCGKYA--VKRKA-VGIWGCK---DCGKVK 63 (91)
Q Consensus 32 q~~ky~CpfCGk~~--VkR~a-~GIW~C~---~Cg~~~ 63 (91)
+...-.||.|.... |++.. -+|+.|. .|.++|
T Consensus 34 ~~~~k~Cp~C~~~V~rVe~~~~~~if~C~~~~~Ckrty 71 (101)
T 3vk6_A 34 KKGDKMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTY 71 (101)
T ss_dssp HTTCCBCTTTCCBCSEEEEEEGGGCCCCCCCCCCCCCC
T ss_pred hccCCCCcCcCCeeeeeEEeccCCEEECCCCCCHHHHh
Confidence 45566899999874 55443 3789998 676654
No 360
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=26.35 E-value=28 Score=24.38 Aligned_cols=38 Identities=32% Similarity=0.740 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 044880 22 RKQIKKMEVSQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 60 (91)
Q Consensus 22 RK~v~kie~~q~~ky~CpfCGk~~VkR~a--~GIW~C~~Cg 60 (91)
++.++++- ++...-.|.-||.......+ .||..|-.|.
T Consensus 26 ~~~l~~L~-~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CS 65 (147)
T 3dwd_A 26 RKVLKEVR-VQDENNVCFECGAFNPQWVSVTYGIWICLECS 65 (147)
T ss_dssp HHHHHHHH-TSTTTTBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred HHHHHHHH-cCcCCCccCCCCCCCCCeEEecccEeEhHhhC
Confidence 45555543 34556689999998877765 4999999884
No 361
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=26.18 E-value=31 Score=26.30 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.7
Q ss_pred ccCCCCceeeE-Eee---eeeeeeCCCCce
Q 044880 37 FCEFCGKYAVK-RKA---VGIWGCKDCGKV 62 (91)
Q Consensus 37 ~CpfCGk~~Vk-R~a---~GIW~C~~Cg~~ 62 (91)
.||.||.+..+ +.+ -..|-|..|-+.
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCcccc
Confidence 79999976533 232 468999999753
No 362
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.12 E-value=28 Score=21.24 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=11.1
Q ss_pred eeeeeCCCCceEec
Q 044880 52 GIWGCKDCGKVKAG 65 (91)
Q Consensus 52 GIW~C~~Cg~~~AG 65 (91)
..|.|..||++.-+
T Consensus 6 ~~y~C~vCGyiYd~ 19 (70)
T 1dx8_A 6 GKYECEACGYIYEP 19 (70)
T ss_dssp SCEEETTTCCEECT
T ss_pred ceEEeCCCCEEEcC
Confidence 46999999988753
No 363
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=26.07 E-value=25 Score=23.49 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=17.5
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCceEeccc
Q 044880 36 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 36 y~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGGA 67 (91)
-.|..|+..- ++|. =||+.||..|=+.-
T Consensus 20 ~~C~~C~~~Fs~~~Rk----HHCR~CG~ifC~~C 49 (120)
T 1y02_A 20 PSCKSCGAHFANTARK----QTCLDCKKNFCMTC 49 (120)
T ss_dssp CCCTTTCCCCSSGGGC----EECTTTCCEECGGG
T ss_pred CcccCcCCcccccccc----ccCCCCCCeeCHHH
Confidence 3677887642 3333 37888888776643
No 364
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.05 E-value=66 Score=19.33 Aligned_cols=62 Identities=11% Similarity=0.142 Sum_probs=37.2
Q ss_pred HHHHHHHhhcccccCCCCceeeEEe-------------------eeeeeeeCCCCceEecccccccccHHHHHHHHHHHH
Q 044880 25 IKKMEVSQHSKYFCEFCGKYAVKRK-------------------AVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 85 (91)
Q Consensus 25 v~kie~~q~~ky~CpfCGk~~VkR~-------------------a~GIW~C~~Cg~~~AGGAy~~~T~~~~t~~~~i~rl 85 (91)
+..........+.||.|-.....-+ ..+...|.-|...+.-....++......+....+.+
T Consensus 11 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 11 VQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred HHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 4444445566778999876432111 112246888888888777777776666666555544
Q ss_pred H
Q 044880 86 R 86 (91)
Q Consensus 86 ~ 86 (91)
.
T Consensus 91 ~ 91 (112)
T 1jm7_A 91 C 91 (112)
T ss_dssp H
T ss_pred H
Confidence 4
No 365
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=25.86 E-value=30 Score=21.60 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=17.5
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
+|.|..|++.. ..-...|..|+..+
T Consensus 47 ~~~C~~C~~~~----~~~~Y~C~~C~f~l 71 (89)
T 1v5n_A 47 VYTCDKCEEEG----TIWSYHCDECDFDL 71 (89)
T ss_dssp SCCCTTTSCCC----CSCEEECTTTCCCC
T ss_pred CeEeCCCCCcC----CCcEEEcCCCCCeE
Confidence 58899998763 22347899997654
No 366
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=25.86 E-value=13 Score=21.79 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=7.2
Q ss_pred eeeeCCCCceEe
Q 044880 53 IWGCKDCGKVKA 64 (91)
Q Consensus 53 IW~C~~Cg~~~A 64 (91)
|+.|-+||.+|+
T Consensus 3 iY~C~rCg~~fs 14 (48)
T 4ayb_P 3 VYRCGKCWKTFT 14 (48)
T ss_dssp --CCCCTTTTCC
T ss_pred EEEeeccCCCcc
Confidence 567777777665
No 367
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=25.75 E-value=38 Score=19.37 Aligned_cols=27 Identities=22% Similarity=0.653 Sum_probs=19.2
Q ss_pred hcccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 33 HSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
..+-.|.+||+.. .++ | .+|..|+..+
T Consensus 20 ~~pt~C~~C~~~i-~kq--g-~kC~~C~~~c 46 (59)
T 1rfh_A 20 GGPGWCDLCGREV-LRQ--A-LRCANCKFTC 46 (59)
T ss_dssp SCCEECTTTCSEE-CSC--C-EECTTTSCEE
T ss_pred CCCeEchhcchhh-hhC--c-cEeCCCCCeE
Confidence 3455799999887 333 4 4899998764
No 368
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=25.75 E-value=15 Score=30.90 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=0.9
Q ss_pred cccccCCCCceeeE-EeeeeeeeeCC---CCceE
Q 044880 34 SKYFCEFCGKYAVK-RKAVGIWGCKD---CGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~Vk-R~a~GIW~C~~---Cg~~~ 63 (91)
.+-.||.||.+.++ ..+.-.|.|.. |-.++
T Consensus 414 ~P~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~ 447 (615)
T 3sgi_A 414 MPTTCPECGSPLAPEKEGDADIRCPNARGCPGQL 447 (615)
T ss_dssp CC--------------------------------
T ss_pred CCCCCCCCCCeeeecCCCCEEEEcCCCCCCHHHH
Confidence 35579999998776 34444699974 76554
No 369
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=25.74 E-value=35 Score=20.47 Aligned_cols=27 Identities=19% Similarity=0.785 Sum_probs=18.8
Q ss_pred cccccCCCCceee--EEeeeeeeeeCCCCceE
Q 044880 34 SKYFCEFCGKYAV--KRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~V--kR~a~GIW~C~~Cg~~~ 63 (91)
.+-.|.+|++... -+++ .+|..|+..+
T Consensus 33 ~pt~C~~C~~~lwGl~kqG---~~C~~C~~~~ 61 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQG---YQCRQCNAAI 61 (77)
T ss_dssp SCEECSSSCCEECCTTCCE---EECSSSCCEE
T ss_pred CCcCccccChhhccccccc---cCcCCCCCcC
Confidence 4558999988653 2333 4899998765
No 370
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.60 E-value=18 Score=22.35 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=20.8
Q ss_pred hhcccccCCCCceeeEEeeeee--eeeCCCCceEeccc
Q 044880 32 QHSKYFCEFCGKYAVKRKAVGI--WGCKDCGKVKAGGA 67 (91)
Q Consensus 32 q~~ky~CpfCGk~~VkR~a~GI--W~C~~Cg~~~AGGA 67 (91)
+..+..|.+|++... =+|+ .+| .||.+|-+--
T Consensus 12 ~~~~~rC~~C~kk~g---L~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLE---LVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CSCTTBCSSSCCBCC---HHHHHHHCC-SSSCCCCTTT
T ss_pred CccCCcchhhCCeec---ccccCceEe-cCCCEehhcc
Confidence 345668999987532 1121 689 8999887643
No 371
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=25.59 E-value=20 Score=23.42 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.9
Q ss_pred hhcccccCCCCceeeEEeeeeeeeeCC
Q 044880 32 QHSKYFCEFCGKYAVKRKAVGIWGCKD 58 (91)
Q Consensus 32 q~~ky~CpfCGk~~VkR~a~GIW~C~~ 58 (91)
...+|.|..|++..+. .||.|++
T Consensus 65 i~Lrl~C~~C~~~~~~----~~~R~k~ 87 (92)
T 1vq8_3 65 TDLKYRCGECGKAHLR----EGWRAGR 87 (92)
T ss_dssp CCEEEEETTTCCEECC----CCCBCSC
T ss_pred EEEEEEecccChhhcc----ccceeeE
Confidence 3567899999987766 4677764
No 372
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=25.48 E-value=17 Score=23.16 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=22.7
Q ss_pred ccCCCCceee-----EEeeeeeee-----eCCCCceE-ecccccc
Q 044880 37 FCEFCGKYAV-----KRKAVGIWG-----CKDCGKVK-AGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V-----kR~a~GIW~-----C~~Cg~~~-AGGAy~~ 70 (91)
.|+.|++... -+..-..|| |..|++.+ .|-.|.+
T Consensus 10 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~ 54 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLL 54 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEE
T ss_pred cccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEe
Confidence 5999998653 233346786 88898888 4544543
No 373
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=25.35 E-value=40 Score=19.42 Aligned_cols=28 Identities=36% Similarity=0.782 Sum_probs=19.0
Q ss_pred hcccccCCCCceee--EEeeeeeeeeCCCCceE
Q 044880 33 HSKYFCEFCGKYAV--KRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~CpfCGk~~V--kR~a~GIW~C~~Cg~~~ 63 (91)
..+-.|.+|++... .+++ .+|..|+..+
T Consensus 21 ~~pt~C~~C~~~l~Gl~~qg---~~C~~C~~~~ 50 (65)
T 2enz_A 21 KSPTFCEHCGTLLWGLARQG---LKCDACGMNV 50 (65)
T ss_dssp CSCCBCSSSCCBCCCSSSCS---EEESSSCCEE
T ss_pred CCCcCchhcChhheecCCcc---cccCCCCCcc
Confidence 34567999988752 3333 4899998765
No 374
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=25.30 E-value=26 Score=21.13 Aligned_cols=22 Identities=32% Similarity=0.696 Sum_probs=15.7
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCc
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCGK 61 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg~ 61 (91)
.|..||+.+.--+- -.|.+||+
T Consensus 19 ~CrRCG~~syH~qK---~~Ca~CGy 40 (57)
T 1vq8_1 19 KCRRCGEKSYHTKK---KVCSSCGF 40 (57)
T ss_dssp ECTTTCSEEEETTT---TEETTTCT
T ss_pred cccccCChhhhccc---cccccccC
Confidence 69999988744221 46999986
No 375
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=25.25 E-value=26 Score=21.15 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=23.4
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCceEec---ccccccccHHHH
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCGKVKAG---GAYTLNTASAVT 77 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg~~~AG---GAy~~~T~~~~t 77 (91)
.||.||...++ =.|..||...-. --|+|+-.-+..
T Consensus 8 ~C~~CgvYTLk------~~CP~CG~~T~~~hParfSp~Dky~~y 45 (60)
T 2apo_B 8 KCPKCGLYTLK------EICPKCGEKTVIPKPPKFSLEDRWGKY 45 (60)
T ss_dssp ECTTTCCEESS------SBCSSSCSBCBCCCCCCCCTTCTTHHH
T ss_pred eCCCCCCEecc------ccCcCCCCcCCCCCCCCCCCCcchHHH
Confidence 69999998885 149999865433 346666665544
No 376
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.17 E-value=24 Score=20.78 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=8.8
Q ss_pred cccccCCCCce
Q 044880 34 SKYFCEFCGKY 44 (91)
Q Consensus 34 ~ky~CpfCGk~ 44 (91)
.+|.||.|+..
T Consensus 11 ~~~~CPrCn~~ 21 (49)
T 2e72_A 11 GRKICPRCNAQ 21 (49)
T ss_dssp SCCCCTTTCCC
T ss_pred CceeCCccccc
Confidence 57889999864
No 377
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=24.74 E-value=46 Score=21.43 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=24.3
Q ss_pred ccccCCCCceeeEE----eeeeeee-----eCCCCceEe--cccccc
Q 044880 35 KYFCEFCGKYAVKR----KAVGIWG-----CKDCGKVKA--GGAYTL 70 (91)
Q Consensus 35 ky~CpfCGk~~VkR----~a~GIW~-----C~~Cg~~~A--GGAy~~ 70 (91)
.-.|+.|++....+ ..-..|| |..|+..+. |..|..
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~ 107 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYT 107 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBC
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEE
Confidence 35799999975433 2234785 889999987 445543
No 378
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=24.48 E-value=25 Score=23.24 Aligned_cols=25 Identities=24% Similarity=0.698 Sum_probs=18.7
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCC
Q 044880 34 SKYFCEFCGKYAVKRKAVGIWGCKDC 59 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~a~GIW~C~~C 59 (91)
..-.|..||..+.- .-.|++.|..|
T Consensus 8 ~~~~C~VCgd~a~G-~HyGv~sC~aC 32 (113)
T 2a66_A 8 LEELCPVCGDKVSG-YHYGLLTCESC 32 (113)
T ss_dssp --CBCTTTCCBEEE-EETTEEEEHHH
T ss_pred CCCCCcEeCCCCcc-eeeCcccHHHH
Confidence 34579999987654 46799999998
No 379
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=24.41 E-value=64 Score=20.15 Aligned_cols=24 Identities=17% Similarity=0.523 Sum_probs=14.2
Q ss_pred CchhhHHHHHHHHHhhcccccCCCCcee
Q 044880 18 GASLRKQIKKMEVSQHSKYFCEFCGKYA 45 (91)
Q Consensus 18 G~slRK~v~kie~~q~~ky~CpfCGk~~ 45 (91)
+..+...+..+ ...+.||.|-..-
T Consensus 39 ~~~~~~~~~~~----~~~~~C~IC~~~~ 62 (124)
T 3fl2_A 39 GSPFQLFLSKV----EETFQCICCQELV 62 (124)
T ss_dssp SCHHHHHHHHH----HHHTBCTTTSSBC
T ss_pred hhhHHHHHHhC----ccCCCCCcCChHH
Confidence 34444444443 3457899998754
No 380
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.36 E-value=24 Score=20.46 Aligned_cols=34 Identities=32% Similarity=0.645 Sum_probs=21.5
Q ss_pred ccCCCCceeeEE---eeeeeee-----eCCCCceEe-cccccc
Q 044880 37 FCEFCGKYAVKR---KAVGIWG-----CKDCGKVKA-GGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~VkR---~a~GIW~-----C~~Cg~~~A-GGAy~~ 70 (91)
.|+.|++....+ ...-.|| |..|+..++ |..|.+
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~ 49 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYL 49 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEE
T ss_pred CcccCCCEecCeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEe
Confidence 688888865322 1223675 888888888 555543
No 381
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=24.19 E-value=39 Score=20.25 Aligned_cols=27 Identities=22% Similarity=0.653 Sum_probs=19.3
Q ss_pred hcccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 33 HSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
..+-.|.+||+.. .++ | .+|..|+..+
T Consensus 33 ~~pt~C~~C~~~l-~~q--G-~kC~~C~~~c 59 (72)
T 2fnf_X 33 GGPGWCDLCGREV-LRQ--A-LRCANCKFTC 59 (72)
T ss_dssp SSCCBCTTTSSBC-SSC--C-EECTTSSCEE
T ss_pred CCCcchhhhhHHH-HhC--c-CccCCCCCee
Confidence 3455799999887 333 4 4899998765
No 382
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=24.16 E-value=36 Score=21.15 Aligned_cols=29 Identities=34% Similarity=0.601 Sum_probs=19.0
Q ss_pred ccccCCCCcee--eEEeeeeeeeeCCCCceEeccc
Q 044880 35 KYFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 67 (91)
Q Consensus 35 ky~CpfCGk~~--VkR~a~GIW~C~~Cg~~~AGGA 67 (91)
.-.|..|++.- ..|. -||+.||..|=+.-
T Consensus 20 ~~~C~~C~~~F~~~~Rr----hhCr~CG~v~C~~C 50 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRR----HHCRACGKVFCGVC 50 (90)
T ss_dssp CCBCTTTCCBCCSSSCC----EECTTTCCEECGGG
T ss_pred CCcCcCCCCcccchhhC----ccccCCCCEECCcc
Confidence 34688888752 3333 48888888876643
No 383
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=23.62 E-value=43 Score=23.20 Aligned_cols=30 Identities=23% Similarity=0.512 Sum_probs=23.3
Q ss_pred HhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 044880 31 SQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 60 (91)
Q Consensus 31 ~q~~ky~CpfCGk~~VkR~a--~GIW~C~~Cg 60 (91)
+....-.|.-||.......+ .||..|-.|.
T Consensus 33 ~~p~N~~CaDCga~~P~WaS~n~GvfiC~~Cs 64 (144)
T 2p57_A 33 AVPTNKACFDCGAKNPSWASITYGVFLCIDCS 64 (144)
T ss_dssp HSGGGGBCTTTCCBSCCEEEGGGTEEECHHHH
T ss_pred cCCCCCcCCCCcCCCCCeEEeccCEEEhhhch
Confidence 34456689999998877665 5999999884
No 384
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=23.60 E-value=37 Score=23.93 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=23.1
Q ss_pred HHhhcccccCCCCceeeEEee--eeeeeeCCC
Q 044880 30 VSQHSKYFCEFCGKYAVKRKA--VGIWGCKDC 59 (91)
Q Consensus 30 ~~q~~ky~CpfCGk~~VkR~a--~GIW~C~~C 59 (91)
.+....-.|-.||.......+ .||..|-.|
T Consensus 12 ~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c 43 (278)
T 1dcq_A 12 QRMTGNDVCCDCGAPDPTWLSTNLGILTCIEC 43 (278)
T ss_dssp HHSTTTTBCTTTCCBSCCEEETTTTEEECHHH
T ss_pred HcCCCCCcCCCCCCCCCCeEEecCCeEEcHHH
Confidence 445566789999988765554 599999999
No 385
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=23.44 E-value=19 Score=23.21 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=16.2
Q ss_pred eeeeeCCCCceEeccccccc
Q 044880 52 GIWGCKDCGKVKAGGAYTLN 71 (91)
Q Consensus 52 GIW~C~~Cg~~~AGGAy~~~ 71 (91)
|+ +|..|-..+.+|.|.|.
T Consensus 30 Gl-HCGE~feV~v~~~Wipt 48 (81)
T 3nrl_A 30 GL-HCGECFDVKVKDVWVPV 48 (81)
T ss_dssp CC-CTTCEEEEEETTEEEEE
T ss_pred Cc-ccccEEEEEECCEEEEE
Confidence 44 89999999999999873
No 386
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=23.33 E-value=49 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.441 Sum_probs=20.9
Q ss_pred ccCCCCcee-eEEeeeeeeeeCCCCceEe
Q 044880 37 FCEFCGKYA-VKRKAVGIWGCKDCGKVKA 64 (91)
Q Consensus 37 ~CpfCGk~~-VkR~a~GIW~C~~Cg~~~A 64 (91)
.||-|++.. |-=.|.-.=.|..|+.+++
T Consensus 34 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp ECSSSCCEEEEETTCSSCEECSSSCCEEE
T ss_pred ECCCCCCeeEEEecCccEEEccCCCCEEe
Confidence 799999976 3333555558999998865
No 387
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.29 E-value=26 Score=19.50 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=23.6
Q ss_pred cccCCCCceeeEE---eeeeee-----eeCCCCceEecccccc
Q 044880 36 YFCEFCGKYAVKR---KAVGIW-----GCKDCGKVKAGGAYTL 70 (91)
Q Consensus 36 y~CpfCGk~~VkR---~a~GIW-----~C~~Cg~~~AGGAy~~ 70 (91)
-.|+.|++....+ ..--.| .|..|+..+.++.|.+
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 48 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYE 48 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTCBCTTTCCBCSSSCCEE
T ss_pred CCCcccCCEecceEEEECccccccCcCEECCCCCCCCCCceEe
Confidence 3689999865322 122367 4889999998877654
No 388
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.99 E-value=35 Score=20.31 Aligned_cols=27 Identities=26% Similarity=0.715 Sum_probs=18.4
Q ss_pred cccccCCCCceee--EEeeeeeeeeCCCCceE
Q 044880 34 SKYFCEFCGKYAV--KRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~V--kR~a~GIW~C~~Cg~~~ 63 (91)
.+-.|.+|++... .+++ .+|..|+..+
T Consensus 27 ~pt~C~~C~~~lwGl~kqG---~~C~~C~~~~ 55 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFG---LRCKNCKTNI 55 (74)
T ss_dssp SCEECSSSCCEECHHHHEE---EEESSSCCEE
T ss_pred CCcCchhcChhhccccCCc---cccCCCCCcc
Confidence 3457999988753 2333 4899998765
No 389
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=22.87 E-value=25 Score=20.28 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=9.7
Q ss_pred eeeeCCCCceEe
Q 044880 53 IWGCKDCGKVKA 64 (91)
Q Consensus 53 IW~C~~Cg~~~A 64 (91)
.|.|..||++.-
T Consensus 3 ~y~C~~CGyvYd 14 (52)
T 1e8j_A 3 IYVCTVCGYEYD 14 (52)
T ss_dssp CEECSSSCCCCC
T ss_pred cEEeCCCCeEEc
Confidence 589999998765
No 390
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=22.74 E-value=47 Score=20.81 Aligned_cols=34 Identities=29% Similarity=0.610 Sum_probs=24.6
Q ss_pred ccCCCCcee-----eEEeeeeeee-----eCCCCceEe-cccccc
Q 044880 37 FCEFCGKYA-----VKRKAVGIWG-----CKDCGKVKA-GGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~-----VkR~a~GIW~-----C~~Cg~~~A-GGAy~~ 70 (91)
.|+.|++.. +-+.....|| |..|+..+. |..|.+
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~ 112 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLL 112 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEE
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEE
Confidence 799999865 3344557887 899999984 655654
No 391
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=22.69 E-value=21 Score=22.76 Aligned_cols=24 Identities=29% Similarity=0.834 Sum_probs=18.6
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCC
Q 044880 36 YFCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 36 y~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
-.|..||+.+.- .-.|++.|..|.
T Consensus 8 ~~C~VCg~~a~g-~hyGv~sC~aCk 31 (94)
T 1a6y_A 8 LLCKVCGDVASG-FHYGVLACEGCK 31 (94)
T ss_dssp CBCTTTSSBCCE-EETTEEECHHHH
T ss_pred CcCcEeCCCCcc-eEeCccchhhhh
Confidence 469999987754 457899999884
No 392
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=22.66 E-value=46 Score=17.49 Aligned_cols=13 Identities=31% Similarity=0.917 Sum_probs=8.6
Q ss_pred eeeeeCCCCceEe
Q 044880 52 GIWGCKDCGKVKA 64 (91)
Q Consensus 52 GIW~C~~Cg~~~A 64 (91)
.+++|..||..+.
T Consensus 5 ~fY~C~~CGnive 17 (36)
T 1dxg_A 5 DVYKCELCGQVVK 17 (36)
T ss_dssp CEEECTTTCCEEE
T ss_pred cEEEcCCCCcEEE
Confidence 4677778876554
No 393
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.60 E-value=47 Score=20.05 Aligned_cols=27 Identities=19% Similarity=0.779 Sum_probs=18.5
Q ss_pred cccccCCCCceee--EEeeeeeeeeCCCCceE
Q 044880 34 SKYFCEFCGKYAV--KRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~V--kR~a~GIW~C~~Cg~~~ 63 (91)
.+-.|.+|++... -+++ .+|..|+..+
T Consensus 27 ~pt~C~~C~~~lwGl~kqg---~~C~~C~~~~ 55 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQG---YKCRQCNAAI 55 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCE---EEETTTCCEE
T ss_pred CCcChhhcChhhccccccc---cccCCcCCee
Confidence 4557999988652 3333 4899998765
No 394
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=22.51 E-value=11 Score=21.05 Aligned_cols=21 Identities=29% Similarity=0.809 Sum_probs=15.5
Q ss_pred CCCCceeeEE-eeeeeeeeCCC
Q 044880 39 EFCGKYAVKR-KAVGIWGCKDC 59 (91)
Q Consensus 39 pfCGk~~VkR-~a~GIW~C~~C 59 (91)
|.|+|+---| .-.|-|-|..|
T Consensus 6 ~~C~KPC~T~DDCS~gw~CqaC 27 (38)
T 4cpa_I 6 PICNKPCKTHDDCSGAWFCQAC 27 (38)
T ss_dssp TTTTCBCSSSSSSCCCSSCCEE
T ss_pred cccCCCccCccccccchHHHHH
Confidence 7888874333 36688999988
No 395
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=22.36 E-value=48 Score=19.00 Aligned_cols=27 Identities=33% Similarity=0.876 Sum_probs=18.2
Q ss_pred cccccCCCCcee--eEEeeeeeeeeCCCCceE
Q 044880 34 SKYFCEFCGKYA--VKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~--VkR~a~GIW~C~~Cg~~~ 63 (91)
.+-.|.+|++.. +.+++ .+|..|+..+
T Consensus 19 ~pt~C~~C~~~l~Gl~~qg---~~C~~C~~~~ 47 (65)
T 3uej_A 19 SPTFCDHCGSLLWGLVKQG---LKCEDCGMNV 47 (65)
T ss_dssp SCCBCTTTCCBCCSSSSCE---EEETTTCCEE
T ss_pred CCCcccccChhhhccCcee---eECCCCCCeE
Confidence 456799998864 23333 4899998654
No 396
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=22.31 E-value=26 Score=21.64 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=11.6
Q ss_pred cccccCCCCceeeEE
Q 044880 34 SKYFCEFCGKYAVKR 48 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR 48 (91)
..-.||.||+...-|
T Consensus 8 ~~~~CP~Cgkp~~W~ 22 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWG 22 (68)
T ss_dssp CEEECTTTCCEEECS
T ss_pred CcCcCCCCCCccccc
Confidence 445799999998754
No 397
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=22.27 E-value=31 Score=21.41 Aligned_cols=24 Identities=29% Similarity=0.725 Sum_probs=16.1
Q ss_pred cccCCCCcee-eEEeeeeeeeeCCCC
Q 044880 36 YFCEFCGKYA-VKRKAVGIWGCKDCG 60 (91)
Q Consensus 36 y~CpfCGk~~-VkR~a~GIW~C~~Cg 60 (91)
-.|..|++.. +.-.-.|. +|..|+
T Consensus 38 I~CnDC~~~s~v~~h~lg~-kC~~C~ 62 (79)
T 2k2d_A 38 ILCNDCNGRSTVQFHILGM-KCKICE 62 (79)
T ss_dssp EEESSSCCEEEEECCTTCC-CCTTTS
T ss_pred EECCCCCCCccCCceeecc-cCcCCC
Confidence 3799999886 33333333 699987
No 398
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=22.24 E-value=40 Score=19.72 Aligned_cols=13 Identities=38% Similarity=1.068 Sum_probs=10.5
Q ss_pred ccCCCCceeeEEe
Q 044880 37 FCEFCGKYAVKRK 49 (91)
Q Consensus 37 ~CpfCGk~~VkR~ 49 (91)
.||+|.+..+-++
T Consensus 39 ycp~c~kHtlhkE 51 (54)
T 3v2d_6 39 YCPWCRKHTVHRE 51 (54)
T ss_dssp EETTTTEEEEEEE
T ss_pred eCCCCCCEeeEEE
Confidence 6999999887654
No 399
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=22.16 E-value=31 Score=20.85 Aligned_cols=35 Identities=23% Similarity=0.553 Sum_probs=24.0
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCceEec---ccccccccHHHH
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCGKVKAG---GAYTLNTASAVT 77 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg~~~AG---GAy~~~T~~~~t 77 (91)
.||-||...++- .|..||...-. .-|+|+-.-+..
T Consensus 7 ~C~~Cg~YTLk~------~CP~CG~~t~~ahParfSP~Dky~~y 44 (60)
T 2aus_D 7 KCPKCGRYTLKE------TCPVCGEKTKVAHPPRFSPEDPYGEY 44 (60)
T ss_dssp ECTTTCCEESSS------BCTTTCSBCEESSCCCCCSCCTTHHH
T ss_pred ECCCCCCEEccc------cCcCCCCccCCCCCCCCCCCCchHHH
Confidence 699999988851 48999865432 456776666554
No 400
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=22.11 E-value=44 Score=18.13 Aligned_cols=23 Identities=35% Similarity=0.745 Sum_probs=14.8
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCCCceE
Q 044880 34 SKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~~VkR~a~GIW~C~~Cg~~~ 63 (91)
....|..||+.. .-.|..|..++
T Consensus 8 ~~~~C~~C~~~~-------~~~C~~C~~~~ 30 (52)
T 2jw6_A 8 KEQSCVNCGREA-------MSECTGCHKVN 30 (52)
T ss_dssp ---CCSSSSSSC-------SEECTTTCSSE
T ss_pred cCCcCCCCCCCC-------cCcCCCCCCEe
Confidence 456799999863 45788887553
No 401
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=22.10 E-value=43 Score=22.77 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=24.8
Q ss_pred ccCCCCceee----EEeeeeeee-----eCCCCceEecccccc
Q 044880 37 FCEFCGKYAV----KRKAVGIWG-----CKDCGKVKAGGAYTL 70 (91)
Q Consensus 37 ~CpfCGk~~V----kR~a~GIW~-----C~~Cg~~~AGGAy~~ 70 (91)
.|+.|++... -......|| |..|+..+.++.|.+
T Consensus 117 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 159 (192)
T 1b8t_A 117 GCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLAD 159 (192)
T ss_dssp ECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEE
T ss_pred cCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccc
Confidence 5999998753 123336886 999999999887754
No 402
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=22.00 E-value=56 Score=18.84 Aligned_cols=28 Identities=21% Similarity=0.536 Sum_probs=19.0
Q ss_pred hcccccCCCCceee--EEeeeeeeeeCCCCceE
Q 044880 33 HSKYFCEFCGKYAV--KRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~CpfCGk~~V--kR~a~GIW~C~~Cg~~~ 63 (91)
..+-.|.+|++... .+++ .+|..|+..+
T Consensus 22 ~~pt~C~~C~~~l~Gl~~qg---~~C~~C~~~~ 51 (66)
T 1y8f_A 22 TTPTYCYECEGLLWGIARQG---MRCTECGVKC 51 (66)
T ss_dssp SSCCCCTTTCCCCCSSCCEE---EEETTTCCEE
T ss_pred CCCcChhhcChhhcccCcce---eEcCCCCCee
Confidence 34557999988752 2333 4899998764
No 403
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.83 E-value=40 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.731 Sum_probs=9.5
Q ss_pred eeeeCCCCceEe
Q 044880 53 IWGCKDCGKVKA 64 (91)
Q Consensus 53 IW~C~~Cg~~~A 64 (91)
.|.|.-||+..-
T Consensus 3 ~y~C~vCGyvYd 14 (54)
T 4rxn_A 3 KYTCTVCGYIYD 14 (54)
T ss_dssp CEEETTTCCEEC
T ss_pred ceECCCCCeEEC
Confidence 588999988764
No 404
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=21.71 E-value=35 Score=22.62 Aligned_cols=29 Identities=21% Similarity=0.594 Sum_probs=17.9
Q ss_pred cccccCCCCce-eeEEeee---eeeeeCCCCceE
Q 044880 34 SKYFCEFCGKY-AVKRKAV---GIWGCKDCGKVK 63 (91)
Q Consensus 34 ~ky~CpfCGk~-~VkR~a~---GIW~C~~Cg~~~ 63 (91)
-.|.|| ||.. .+-+... -+=.|.+|...|
T Consensus 111 f~~~Cr-CG~~f~i~~~~l~~~~~v~C~sCSl~~ 143 (155)
T 2l6l_A 111 FYLSCR-CGGKYSVSKDEAEEVSLISCDTCSLII 143 (155)
T ss_dssp EEEECS-SSCEEEEETTHHHHCCEEECSSSSCEE
T ss_pred EEEcCC-CCCeEEecHHHhCCCCEEECCCCceEE
Confidence 346898 8865 3333322 255799998765
No 405
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.28 E-value=53 Score=20.01 Aligned_cols=28 Identities=25% Similarity=0.619 Sum_probs=19.0
Q ss_pred hcccccCCCCceee--EEeeeeeeeeCCCCceE
Q 044880 33 HSKYFCEFCGKYAV--KRKAVGIWGCKDCGKVK 63 (91)
Q Consensus 33 ~~ky~CpfCGk~~V--kR~a~GIW~C~~Cg~~~ 63 (91)
..+-.|.+|++... .+++ .+|..|+..+
T Consensus 26 ~~pt~C~~C~~~l~Gl~kqG---~~C~~C~~~~ 55 (85)
T 2eli_A 26 GSPTFCDHCGSLLYGLIHQG---MKCDTCDMNV 55 (85)
T ss_dssp SSCCBCSSSCCBCCCSSSCE---EECSSSCCEE
T ss_pred CCCcCCcccCccccccccCC---CcCCCcCCcc
Confidence 34567999988653 2333 4899998765
No 406
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=21.15 E-value=24 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=19.0
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCC
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
.-.|..||..+.- .-.|++.|..|.
T Consensus 8 ~~~C~VCg~~a~g-~hyGv~sC~aCk 32 (119)
T 2han_B 8 EELCLVCGDRASG-YHYNALTCEGCK 32 (119)
T ss_dssp SCBCTTTCSBCCE-EETTEEECHHHH
T ss_pred CCcCeEeCCcCCc-ceECchhHHhhH
Confidence 3469999987643 467899999883
No 407
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=21.03 E-value=25 Score=22.22 Aligned_cols=23 Identities=30% Similarity=0.783 Sum_probs=17.6
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCC
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCG 60 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg 60 (91)
.|..||+.+.- .-.|++.|..|.
T Consensus 2 ~C~VCg~~a~g-~hyGv~sC~aCk 24 (89)
T 1cit_A 2 RCAVCGDNASC-QHYGVRTCEGCK 24 (89)
T ss_dssp CCSSSCCCCCE-EETTEEECHHHH
T ss_pred CCeEeCCCCcc-eEeCccchhhhh
Confidence 48999987654 457899999883
No 408
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=20.96 E-value=28 Score=22.37 Aligned_cols=12 Identities=25% Similarity=0.949 Sum_probs=9.9
Q ss_pred hcccccCCCCce
Q 044880 33 HSKYFCEFCGKY 44 (91)
Q Consensus 33 ~~ky~CpfCGk~ 44 (91)
...+.|++||..
T Consensus 33 r~~~~C~yCg~~ 44 (112)
T 2qgp_A 33 IARGICHYCGEI 44 (112)
T ss_dssp HHHTBCTTTCCB
T ss_pred HcCCcCCCCCCc
Confidence 456899999986
No 409
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=20.76 E-value=18 Score=23.49 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=16.9
Q ss_pred ccCCCCceeeEEeeeeeeeeCCC
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDC 59 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~C 59 (91)
.|..||..+.- .-.|++.|..|
T Consensus 3 ~C~VCgd~a~g-~hyGv~sC~aC 24 (103)
T 2nll_B 3 LCVVCGDKATG-YHYRCITCEGC 24 (103)
T ss_dssp BCTTTCSBCCS-EETTEECCHHH
T ss_pred CCeEeCCcCcC-eecCcccHHHh
Confidence 59999987644 35788888888
No 410
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=20.68 E-value=25 Score=22.34 Aligned_cols=24 Identities=38% Similarity=1.007 Sum_probs=19.0
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCC
Q 044880 35 KYFCEFCGKYAVKRKAVGIWGCKDC 59 (91)
Q Consensus 35 ky~CpfCGk~~VkR~a~GIW~C~~C 59 (91)
...|..||..+.- .-.|++.|..|
T Consensus 10 ~~~C~VCgd~a~g-~hyGv~sC~aC 33 (93)
T 2han_A 10 KHLCSICGDRASG-KHYGVYSCEGC 33 (93)
T ss_dssp CCBCTTTCSBCCE-EETTEEECHHH
T ss_pred CCCCcEeCCCCcC-eecCcchhHHH
Confidence 4579999987644 46789999988
No 411
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.62 E-value=32 Score=19.51 Aligned_cols=10 Identities=30% Similarity=0.129 Sum_probs=8.2
Q ss_pred cccCCCCcee
Q 044880 36 YFCEFCGKYA 45 (91)
Q Consensus 36 y~CpfCGk~~ 45 (91)
|.|+.||+.-
T Consensus 63 ~~C~~C~k~f 72 (95)
T 2ej4_A 63 EECPREGKSF 72 (95)
T ss_dssp TTCSSTTCCC
T ss_pred cCCCCCCccc
Confidence 8999998753
No 412
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.23 E-value=35 Score=20.88 Aligned_cols=22 Identities=32% Similarity=0.673 Sum_probs=15.9
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCc
Q 044880 37 FCEFCGKYAVKRKAVGIWGCKDCGK 61 (91)
Q Consensus 37 ~CpfCGk~~VkR~a~GIW~C~~Cg~ 61 (91)
.|..||+.+.--+- ..|.+||+
T Consensus 19 lCrRCG~~syH~qK---~~Ca~CGy 40 (62)
T 3j21_e 19 RCRRCGRVSYNVKK---GYCAACGF 40 (62)
T ss_dssp BCSSSCSBCEETTT---TEETTTCT
T ss_pred eecccCcchhcccc---ccccccCC
Confidence 69999988743222 46999987
Done!