Query 044881
Match_columns 241
No_of_seqs 144 out of 1337
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044881.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044881hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 1E-45 2.2E-50 321.2 12.3 198 1-202 14-211 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 4.4E-22 9.6E-27 148.4 7.3 86 118-203 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 4.7E-20 1E-24 137.5 4.6 79 2-83 9-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 8E-14 1.7E-18 121.8 6.4 90 114-203 4-94 (243)
5 COG4095 Uncharacterized conser 99.2 1.1E-11 2.4E-16 91.6 5.1 83 116-201 5-87 (89)
6 COG4095 Uncharacterized conser 99.1 6.9E-11 1.5E-15 87.4 5.4 74 3-79 12-85 (89)
7 TIGR00951 2A43 Lysosomal Cysti 98.7 7.7E-07 1.7E-11 77.4 16.2 184 5-192 13-213 (220)
8 KOG3211 Predicted endoplasmic 98.2 1.3E-05 2.8E-10 68.5 9.8 181 9-203 44-227 (230)
9 PF04193 PQ-loop: PQ loop repe 98.0 1.3E-05 2.9E-10 55.3 5.2 56 117-175 3-58 (61)
10 PF04193 PQ-loop: PQ loop repe 97.9 9.1E-06 2E-10 56.2 3.3 50 3-54 9-58 (61)
11 KOG2913 Predicted membrane pro 96.7 0.012 2.7E-07 52.4 9.6 191 4-202 17-249 (260)
12 TIGR00951 2A43 Lysosomal Cysti 96.2 0.0089 1.9E-07 52.0 5.4 50 116-168 4-53 (220)
13 smart00679 CTNS Repeated motif 95.7 0.011 2.5E-07 35.3 2.6 28 10-37 2-29 (32)
14 PF03650 MPC: Uncharacterised 94.3 0.008 1.7E-07 47.4 -1.0 63 144-206 39-103 (119)
15 PRK01021 lpxB lipid-A-disaccha 94.2 0.55 1.2E-05 46.7 11.2 159 26-194 38-214 (608)
16 smart00679 CTNS Repeated motif 93.7 0.048 1E-06 32.4 1.9 28 133-160 2-29 (32)
17 PHA02246 hypothetical protein 92.0 4.4 9.4E-05 33.6 11.5 165 5-191 14-185 (192)
18 PF03650 MPC: Uncharacterised 90.3 0.22 4.8E-06 39.3 2.4 61 21-82 39-99 (119)
19 KOG1589 Uncharacterized conser 88.0 0.43 9.4E-06 37.0 2.5 58 21-79 43-100 (118)
20 PHA02246 hypothetical protein 86.8 3.6 7.7E-05 34.2 7.3 63 3-67 116-178 (192)
21 KOG1589 Uncharacterized conser 84.2 0.27 5.9E-06 38.1 -0.4 56 144-199 43-100 (118)
22 KOG3211 Predicted endoplasmic 82.0 1.7 3.8E-05 37.6 3.6 74 7-82 153-226 (230)
23 KOG3145 Cystine transporter Cy 78.7 26 0.00057 32.2 10.2 138 9-153 137-298 (372)
24 KOG2913 Predicted membrane pro 77.0 4.8 0.0001 36.0 5.0 58 113-173 6-63 (260)
25 PF10688 Imp-YgjV: Bacterial i 76.3 42 0.00092 27.7 11.1 126 32-192 29-154 (163)
26 TIGR00341 conserved hypothetic 74.1 39 0.00084 31.3 10.3 167 30-203 114-294 (325)
27 COG3952 Predicted membrane pro 73.1 4.4 9.6E-05 31.3 3.2 63 141-203 47-109 (113)
28 TIGR02003 PTS-II-BC-unk1 PTS s 69.9 10 0.00022 37.5 5.8 20 174-195 412-431 (548)
29 PF10688 Imp-YgjV: Bacterial i 67.3 5.8 0.00013 32.8 3.1 38 33-73 118-155 (163)
30 PF15102 TMEM154: TMEM154 prot 66.9 6.1 0.00013 32.3 3.0 37 176-212 60-96 (146)
31 KOG2927 Membrane component of 58.9 24 0.00053 32.9 5.7 25 159-185 241-265 (372)
32 PF13965 SID-1_RNA_chan: dsRNA 56.6 2.2E+02 0.0047 28.5 14.3 151 4-167 346-499 (570)
33 PRK05771 V-type ATP synthase s 56.0 2.3E+02 0.0049 28.5 14.5 49 8-69 325-373 (646)
34 PF05297 Herpes_LMP1: Herpesvi 54.6 5 0.00011 36.6 0.5 86 116-204 104-190 (381)
35 TIGR02004 PTS-IIBC-malX PTS sy 54.2 45 0.00098 32.8 7.1 30 163-194 373-405 (517)
36 KOG2325 Predicted transporter/ 53.7 72 0.0016 31.2 8.3 28 179-206 209-236 (488)
37 PF07578 LAB_N: Lipid A Biosyn 50.6 28 0.00061 25.1 3.8 44 146-189 24-67 (72)
38 PF03030 H_PPase: Inorganic H+ 49.3 42 0.00091 34.2 6.1 62 174-238 151-214 (682)
39 PF07857 DUF1632: CEO family ( 43.9 50 0.0011 29.5 5.2 54 148-201 79-138 (254)
40 PF06946 Phage_holin_5: Phage 41.2 29 0.00062 26.3 2.7 57 152-208 35-91 (93)
41 PF06570 DUF1129: Protein of u 40.8 1.2E+02 0.0027 25.6 7.0 46 157-202 152-201 (206)
42 cd08764 Cyt_b561_CG1275_like N 39.2 2.6E+02 0.0056 24.3 10.6 23 115-137 96-118 (214)
43 PF09586 YfhO: Bacterial membr 38.2 4.6E+02 0.0099 26.9 13.1 18 10-27 230-247 (843)
44 PF07578 LAB_N: Lipid A Biosyn 36.5 48 0.001 23.9 3.2 54 12-69 14-67 (72)
45 PF06123 CreD: Inner membrane 33.2 3.3E+02 0.0071 26.3 9.2 96 68-178 306-406 (430)
46 COG5196 ERD2 ER lumen protein 33.0 3.1E+02 0.0066 23.3 8.6 64 132-195 130-193 (214)
47 PRK10110 bifunctional PTS syst 32.2 1.1E+02 0.0024 30.1 6.0 31 163-195 382-415 (530)
48 PF06638 Strabismus: Strabismu 31.5 1.9E+02 0.0042 28.4 7.3 35 137-171 185-219 (505)
49 KOG3618 Adenylyl cyclase [Gene 31.4 6.6E+02 0.014 26.7 11.5 18 34-53 87-104 (1318)
50 PRK11715 inner membrane protei 30.5 3.5E+02 0.0075 26.1 8.9 84 84-178 328-412 (436)
51 KOG1289 Amino acid transporter 29.9 77 0.0017 31.4 4.4 54 115-172 416-474 (550)
52 PRK15419 proline:sodium sympor 29.2 5.2E+02 0.011 24.8 11.0 46 142-192 421-466 (502)
53 PRK11387 S-methylmethionine tr 28.8 1.6E+02 0.0036 27.9 6.5 26 182-207 439-464 (471)
54 PRK00733 hppA membrane-bound p 28.4 3E+02 0.0066 28.1 8.3 57 179-238 137-195 (666)
55 TIGR00341 conserved hypothetic 27.5 1.4E+02 0.003 27.7 5.4 53 28-83 242-294 (325)
56 PHA03049 IMV membrane protein; 27.4 23 0.0005 25.1 0.2 27 183-209 8-34 (68)
57 PRK05863 sulfur carrier protei 27.3 28 0.0006 24.0 0.7 15 226-240 51-65 (65)
58 PRK10429 melibiose:sodium symp 27.1 4.8E+02 0.01 24.5 9.3 11 196-206 431-441 (473)
59 PRK15049 L-asparagine permease 26.8 2.5E+02 0.0053 27.1 7.3 23 117-139 379-401 (499)
60 KOG2890 Predicted membrane pro 26.4 3.8E+02 0.0081 24.8 7.8 129 58-200 76-218 (326)
61 PF08693 SKG6: Transmembrane a 25.9 76 0.0016 20.2 2.4 19 184-202 22-40 (40)
62 PRK15238 inner membrane transp 25.3 2.9E+02 0.0063 26.4 7.5 24 117-140 395-418 (496)
63 COG3104 PTR2 Dipeptide/tripept 24.7 3.5E+02 0.0077 26.6 7.8 132 28-172 165-304 (498)
64 PF03600 CitMHS: Citrate trans 24.3 5.2E+02 0.011 23.2 9.6 14 12-25 117-130 (351)
65 PRK07696 sulfur carrier protei 23.3 34 0.00074 23.8 0.5 15 226-240 53-67 (67)
66 KOG2489 Transmembrane protein 23.2 4.8E+02 0.01 25.9 8.3 146 15-165 340-515 (592)
67 PRK10580 proY putative proline 22.2 2.9E+02 0.0063 26.0 6.8 30 113-142 354-383 (457)
68 PF11023 DUF2614: Protein of u 21.8 2.3E+02 0.005 22.2 4.9 14 77-90 3-16 (114)
69 TIGR01943 rnfA electron transp 21.3 5.2E+02 0.011 22.0 13.3 40 122-161 137-180 (190)
70 TIGR00910 2A0307_GadC glutamat 21.2 5.1E+02 0.011 25.0 8.3 13 190-202 452-464 (507)
71 COG3952 Predicted membrane pro 21.0 1.7E+02 0.0037 22.8 3.9 51 25-78 54-104 (113)
72 PRK07440 hypothetical protein; 21.0 41 0.00089 23.7 0.5 27 214-240 32-70 (70)
73 PRK02935 hypothetical protein; 20.8 3.1E+02 0.0068 21.3 5.3 14 77-90 4-17 (110)
74 PRK10255 PTS system N-acetyl g 20.6 6.8E+02 0.015 25.5 9.2 30 164-195 323-355 (648)
75 PRK05659 sulfur carrier protei 20.4 43 0.00093 22.7 0.5 14 227-240 53-66 (66)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=1e-45 Score=321.17 Aligned_cols=198 Identities=50% Similarity=0.832 Sum_probs=178.2
Q ss_pred CeeehhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccC
Q 044881 1 NIISLFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSD 80 (241)
Q Consensus 1 ~v~sv~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~ 80 (241)
|++|++++++|+|+++||+|+||+|+.|..||+++++||.+|+.||+ +++++..++.+|.+|+++.++|+..|+.|++
T Consensus 14 ~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~--~~~~d~llitIN~~G~~ie~~Yi~~f~~ya~ 91 (243)
T KOG1623|consen 14 NIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGL--LKVHDYLLITINGIGLVIETVYISIFLYYAP 91 (243)
T ss_pred HHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhh--hccCceEEEEEehhcHHHHHHHHHHHheecC
Confidence 57899999999999999999999999999999999999999999998 6765788999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHH
Q 044881 81 KKKRIKVMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLA 160 (241)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~ 160 (241)
+|++.+.. ....+.++.+..++++...++++++.+.+|.+|.+++++||+|||..+++|+|+||+|.||++++++.++
T Consensus 92 ~k~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl 169 (243)
T KOG1623|consen 92 KKKTVKIV--LALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFL 169 (243)
T ss_pred chheeEee--ehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHH
Confidence 88733222 1223334444445566677888888999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhcccCCCeeEEechhHHHHHHHHHhhheeEEeCCc
Q 044881 161 NGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVILYACYYKST 202 (241)
Q Consensus 161 n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~ 202 (241)
++..|++||++++|.++.+||++|++++.+|+.+|++|++++
T Consensus 170 ~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~ 211 (243)
T KOG1623|consen 170 VAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTT 211 (243)
T ss_pred HHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999999999999999999999999999999877
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.86 E-value=4.4e-22 Score=148.44 Aligned_cols=86 Identities=31% Similarity=0.501 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHhhheeE
Q 044881 118 AVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVILYAC 197 (241)
Q Consensus 118 ~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~ 197 (241)
++|.+|.+.++++++||++++++++|+|+++++|++|++++++||.+|+.||++++|++++++|++|++++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCcc
Q 044881 198 YYKSTK 203 (241)
Q Consensus 198 y~~~~~ 203 (241)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998875
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.79 E-value=4.7e-20 Score=137.50 Aligned_cols=79 Identities=29% Similarity=0.713 Sum_probs=74.7
Q ss_pred eeehhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCc
Q 044881 2 IISLFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDK 81 (241)
Q Consensus 2 v~sv~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~ 81 (241)
++++++++||+|+++|++|+|++|++|+.|+++.++||.+|+.||+ +.+| ++++.+|++|++++++|+.+|++|+++
T Consensus 9 ~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~--l~~d-~~i~~~N~~g~~~~~~~~~~~~~y~~~ 85 (87)
T PF03083_consen 9 VSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGI--LIND-WPIIVPNVFGLVLSIIYLVVYYIYPSK 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhh--hcCC-eeEEeeHHHHHHHHHHHHhheEEeCCC
Confidence 4688999999999999999999999999999999999999999999 7755 689999999999999999999999988
Q ss_pred hh
Q 044881 82 KK 83 (241)
Q Consensus 82 ~~ 83 (241)
||
T Consensus 86 ~~ 87 (87)
T PF03083_consen 86 KK 87 (87)
T ss_pred CC
Confidence 75
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.46 E-value=8e-14 Score=121.80 Aligned_cols=90 Identities=22% Similarity=0.383 Sum_probs=85.5
Q ss_pred hhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccCC-CeeEEechhHHHHHHHHHh
Q 044881 114 QRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLPF-DQFIAIPNGLGTLLGVAQV 192 (241)
Q Consensus 114 ~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~-d~~i~~~N~~G~~l~~~ql 192 (241)
.....+|..|.++++++|.+|+++++|+.|+||+|+.+..|++++++||.+|+.||.+.+ |..++..|.+|+++..+++
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999887 8889999999999999999
Q ss_pred hheeEEeCCcc
Q 044881 193 ILYACYYKSTK 203 (241)
Q Consensus 193 ~l~~~y~~~~~ 203 (241)
..|+.|.++|+
T Consensus 84 ~~f~~ya~~k~ 94 (243)
T KOG1623|consen 84 SIFLYYAPKKK 94 (243)
T ss_pred HHHheecCchh
Confidence 99999998877
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.1e-11 Score=91.58 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=75.6
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHhhhe
Q 044881 116 SMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVILY 195 (241)
Q Consensus 116 ~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~ 195 (241)
..+.|..|+.++.++| +||+.+++|+||++++++.++.......++|.+||++++|.++...|.+++.++.+-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 4578999999998888 9999999999999999999999999999999999999999999999999999999888776
Q ss_pred eEEeCC
Q 044881 196 ACYYKS 201 (241)
Q Consensus 196 ~~y~~~ 201 (241)
..|..|
T Consensus 82 I~~~~k 87 (89)
T COG4095 82 IKYILK 87 (89)
T ss_pred HHHHHh
Confidence 666543
No 6
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=6.9e-11 Score=87.36 Aligned_cols=74 Identities=12% Similarity=0.327 Sum_probs=67.8
Q ss_pred eehhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhcc
Q 044881 3 ISLFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHS 79 (241)
Q Consensus 3 ~sv~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~ 79 (241)
+++...++.+||..|++|+|+|+++|+.+|+.....+.+|+.||+ +.+ +.|++..|.++..++..-+....+|.
T Consensus 12 a~ilttf~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygI--Li~-~lPii~aN~i~~il~liIl~~kI~~~ 85 (89)
T COG4095 12 AGILTTFAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGI--LIN-DLPIIIANIISFILSLIILFYKIKYI 85 (89)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHH--HHc-cCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999 785 47899999999999998888877764
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=98.73 E-value=7.7e-07 Score=77.39 Aligned_cols=184 Identities=11% Similarity=0.032 Sum_probs=109.7
Q ss_pred hhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhccc-----ccCCCeEEe----h-hhHHH----HHHHHH
Q 044881 5 LFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPM-----VHPHSILVI----T-INGSG----TAIEVV 70 (241)
Q Consensus 5 v~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~-----l~~~~~~li----~-~N~~G----~~l~~~ 70 (241)
++-..+.+||+++++|+||++++|+..+..-..+...|..|-..+ ..++ +|.- . .+.+- +++.+.
T Consensus 13 ~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~-~~~~~~~v~~edl~~ai~~~il~~l 91 (220)
T TIGR00951 13 AAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNE-FPLSSPGVTQNDVFFTLHAILICFI 91 (220)
T ss_pred HHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhc-cccccCCCcHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999992100 1221 2211 1 12332 222222
Q ss_pred HHHHhhhccCchhHH-H-HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcc
Q 044881 71 YIILFVLHSDKKKRI-K-VMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVE 148 (241)
Q Consensus 71 y~~v~~~y~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~ 148 (241)
...-+.+|.+..+|. + ......................-..+.+....++.+-..++++ +-+||++.-.|+|||+
T Consensus 92 ~~~q~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~iki~is~i---kyiPQi~~Ny~~ksT~ 168 (220)
T TIGR00951 92 VLHQCGDYERGWQRVSNPWILRILVALLACFATLLVALLSPITPLAFVTMLSYIKVAVTLV---KYFPQAATNYHNKSTG 168 (220)
T ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH---HHhHHHHHHHhcCCCC
Confidence 222233344332221 1 1111111111111111111111112344455555555555554 5599999999999999
Q ss_pred cchhHHHHHHHHhhHHhhhhccc-CCCeeEEechhHHHHHHHHHh
Q 044881 149 YMPFFLSLMSLANGIAWTTYAFL-PFDQFIAIPNGLGTLLGVAQV 192 (241)
Q Consensus 149 ~i~~~~~~~~~~n~~lW~~YG~l-~~d~~i~~~N~~G~~l~~~ql 192 (241)
+.|.......+.+++.-+.-... .+|...+..-.+++.++.+.+
T Consensus 169 glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~ 213 (220)
T TIGR00951 169 QLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFA 213 (220)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777666653 357777777777777776544
No 8
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.19 E-value=1.3e-05 Score=68.51 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=120.2
Q ss_pred hccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhh-hccCchhHH-H
Q 044881 9 LSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFV-LHSDKKKRI-K 86 (241)
Q Consensus 9 ~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~-~y~~~~~~~-~ 86 (241)
+-.+||+.||+..||++++|...+...++....-+.|.+ .++.++.-.--.+=++++.+.+..+. .|+-..... +
T Consensus 44 ~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~~---~~g~pFss~gE~~fLl~Q~vili~~if~f~~~~~~~v~ 120 (230)
T KOG3211|consen 44 LVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYSY---TSGYPFSSYGEYPFLLLQAVILILCIFHFSGQTVTVVQ 120 (230)
T ss_pred HhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeehh---hcCCCchhHHHHHHHHHHHHHHHHHHHHhccceeehhh
Confidence 456899999999999999999999999999999999996 54544333444455555554444433 344111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhh
Q 044881 87 VMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWT 166 (241)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~ 166 (241)
.+. .++.+.. ... +......+.-+..+...-+.-.+-++|+..-.|+|+++.+++...+..+-.+..-+
T Consensus 121 ~l~-------~~~~v~~-~~~---sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARi 189 (230)
T KOG3211|consen 121 FLG-------YIALVVS-VLA---SKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARI 189 (230)
T ss_pred HHH-------HHHHHHH-HHH---HhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHH
Confidence 111 1111110 111 11222233344444444345578899999999999999999999999999999999
Q ss_pred hhcccC-CCeeEEechhHHHHHHHHHhhheeEEeCCcc
Q 044881 167 TYAFLP-FDQFIAIPNGLGTLLGVAQVILYACYYKSTK 203 (241)
Q Consensus 167 ~YG~l~-~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~ 203 (241)
+|.... +|.-+...-++...++..-.+-.++|+++++
T Consensus 190 ftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 190 FTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred HHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 999985 6777777777777777765555556665433
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=97.99 E-value=1.3e-05 Score=55.31 Aligned_cols=56 Identities=27% Similarity=0.367 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccCCCe
Q 044881 117 MAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQ 175 (241)
Q Consensus 117 ~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~ 175 (241)
+.+|.++.++... +.+||+++.+|+|+++++++......+.++.+|+.|.+..++.
T Consensus 3 ~~~g~i~~~~~~~---~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISIVLWII---SFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHH---HHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4566666666554 5599999999999999999999999999999999999987653
No 10
>PF04193 PQ-loop: PQ loop repeat
Probab=97.93 E-value=9.1e-06 Score=56.17 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=45.2
Q ss_pred eehhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCC
Q 044881 3 ISLFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHS 54 (241)
Q Consensus 3 ~sv~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~ 54 (241)
..++..++.+||+++.+|+|+++++|...+.....+..+|+.|.+ +.+.+
T Consensus 9 ~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~--~~~~~ 58 (61)
T PF04193_consen 9 SIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSI--LSNYP 58 (61)
T ss_pred HHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 356788999999999999999999999999999999999999998 66543
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=96.72 E-value=0.012 Score=52.43 Aligned_cols=191 Identities=14% Similarity=0.132 Sum_probs=100.8
Q ss_pred ehhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCchh
Q 044881 4 SLFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDKKK 83 (241)
Q Consensus 4 sv~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~~~ 83 (241)
++|-..+-+||+.+..|+|+++++|+.+.+.-+.....=+.|.. +.+.. |+...-..=..++...+.+...|-++..
T Consensus 17 ~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~--l~~~~-~~~~~~~~yy~~~d~~l~~q~~yy~~~~ 93 (260)
T KOG2913|consen 17 TVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFF--LQPLG-STLKVQAVYYTLADSVLFVQCLYYGNIY 93 (260)
T ss_pred HHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHH--hcccc-hhHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 45566778999999999999999999999998888888888887 66432 2212111111122222222222211111
Q ss_pred H---------HHH----------------------HHHHHHHHHHHHHHHHHHH---HHhcc---cc-hhhhhhhH-HHH
Q 044881 84 R---------IKV----------------------MLVVLVEVIFVALVALLVL---TLLHS---TK-QRSMAVGI-ICI 124 (241)
Q Consensus 84 ~---------~~~----------------------~~~~~~~~~~~~~~~~~~~---~~~~~---~~-~~~~~lG~-~a~ 124 (241)
+ .+. +... ...+...++.... ..... .+ ...+.+|. ++.
T Consensus 94 ~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~ilG~ 171 (260)
T KOG2913|consen 94 PREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVV--ALGFLAIVFLICGAAYESLLRAVRVNGLEIDSLGAILGS 171 (260)
T ss_pred ccCccccccchhhhhcchHHHHHHHhhccCcchhhccch--hhhhHHHHHHHHHHHhhccccccccchhhhcchHHHHHH
Confidence 1 000 0000 0001111111110 11110 11 22334555 444
Q ss_pred HHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhccc---CCCeeEEechhHHHHHHHHHhhheeEEeCC
Q 044881 125 LFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFL---PFDQFIAIPNGLGTLLGVAQVILYACYYKS 201 (241)
Q Consensus 125 ~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l---~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~ 201 (241)
+.+.+-.++++||+..-+|.|+++++++.++....+.+ ..|+.- ..|..=..--.-+..+-+....=++.|++.
T Consensus 172 l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~~~~~n~~w~~~~~~~~~~D~~~~~q~~~~~~~ 248 (260)
T KOG2913|consen 172 LSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSSYLVTNLPWLVDSKGTIYLDIFIFLQFFNYRAS 248 (260)
T ss_pred HHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccccccccCCcccccCCcchhHHHHHHHHHHHhhcc
Confidence 56666788999999999999999999997776555555 466655 112111111122233444444445666655
Q ss_pred c
Q 044881 202 T 202 (241)
Q Consensus 202 ~ 202 (241)
|
T Consensus 249 ~ 249 (260)
T KOG2913|consen 249 K 249 (260)
T ss_pred c
Confidence 5
No 12
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.20 E-value=0.0089 Score=52.01 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=43.4
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhh
Q 044881 116 SMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTY 168 (241)
Q Consensus 116 ~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~Y 168 (241)
+..+|....++....+ +||+.+.+|+||++++++.......++...|..|
T Consensus 4 S~~lG~~~~~~~~~~~---~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWSISF---YPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHHHHH---hhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4567777777666554 9999999999999999999999999999999999
No 13
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.66 E-value=0.011 Score=35.26 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=23.9
Q ss_pred ccHHHHHHHHHhCCCCCcCchhHHHHHH
Q 044881 10 SPVPTFVEIVKKGTVEQYSAAPYLATLL 37 (241)
Q Consensus 10 Splp~~~~I~k~kstg~~s~~p~~~~~~ 37 (241)
+.+||+.+++|+|+++++|...+.+.+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 6789999999999999999887765543
No 14
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=94.32 E-value=0.008 Score=47.37 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=54.8
Q ss_pred cCCcccchhHHHHHHHHhhHHhhhhcccC--CCeeEEechhHHHHHHHHHhhheeEEeCCcchhh
Q 044881 144 TKSVEYMPFFLSLMSLANGIAWTTYAFLP--FDQFIAIPNGLGTLLGVAQVILYACYYKSTKRQM 206 (241)
Q Consensus 144 tkst~~i~~~~~~~~~~n~~lW~~YG~l~--~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~ 206 (241)
+|..|.++..+..+.++.+.+|.-|++.+ +|+.++..|+.-...+..|+.=++.|...+++..
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~~~ 103 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKKEA 103 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 58999999999999999999999999987 5888888899999999999988887776554433
No 15
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=94.16 E-value=0.55 Score=46.69 Aligned_cols=159 Identities=10% Similarity=0.134 Sum_probs=85.3
Q ss_pred CcCchhH-HHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCchhHHHHH-HHHHHHHHHHHH-HH
Q 044881 26 QYSAAPY-LATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDKKKRIKVM-LVVLVEVIFVAL-VA 102 (241)
Q Consensus 26 ~~s~~p~-~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~~~~~~~~-~~~~~~~~~~~~-~~ 102 (241)
.+-|.-| ..-+.++.+=+.||+ +.+| .|++....+|.++..=.+.+-.. .+.-.|.. ..+....++++. +.
T Consensus 38 s~~p~~FW~~Sl~g~~~l~~y~~--~~~~-~~~~~~q~~~~~iy~rNl~l~~~---~~~~~~~~~~~~~~~~~~~~~p~~ 111 (608)
T PRK01021 38 SYVPKIFWILSSIGAVLMICHGF--IQSQ-FPIALLHSFNLIIYFRNLNIASS---RPLSVSKTLSLLVLSATAITLPFA 111 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHHHH--HhcC-CcEEEecccceEEEeehhhhccc---ccchHHHHHHHHHhhhHhhhhHHH
Confidence 3444444 477888999999998 6755 56776555554432222222111 12211221 111111111111 11
Q ss_pred HHHHHHhc---------------ccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhh
Q 044881 103 LLVLTLLH---------------STKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTT 167 (241)
Q Consensus 103 ~~~~~~~~---------------~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~ 167 (241)
+.++.... +.+.....+|.+|-++-..=| +-|- -.-+++..+.+|..--..+++++++=++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf---~~Qw-~~se~~~~s~~p~~FW~~s~~G~~~~l~ 187 (608)
T PRK01021 112 IGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRF---FIQW-FYLEYNNQSALPALFWKASLLGGSLALL 187 (608)
T ss_pred HHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHH---HHHH-HHHHhcCCCCCcHHHHHHHHHhHHHHHH
Confidence 11111111 112223445554443322222 3332 2233344456677777899999999999
Q ss_pred hcccCCCeeEEechhHHHHHHHHHhhh
Q 044881 168 YAFLPFDQFIAIPNGLGTLLGVAQVIL 194 (241)
Q Consensus 168 YG~l~~d~~i~~~N~~G~~l~~~ql~l 194 (241)
|++.++|...++....|++...-.+.+
T Consensus 188 Y~i~r~dpv~i~g~~~g~~~y~rnl~l 214 (608)
T PRK01021 188 YFIRTGDPVNILCYGCGLFPSLANLRI 214 (608)
T ss_pred HHHHhCCceEEEccccchhHHHHHHHH
Confidence 999999999999999999877766544
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=93.72 E-value=0.048 Score=32.45 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=23.7
Q ss_pred hhhhhhhhhhccCCcccchhHHHHHHHH
Q 044881 133 SPLSVMKLVITTKSVEYMPFFLSLMSLA 160 (241)
Q Consensus 133 sPL~~i~~Viktkst~~i~~~~~~~~~~ 160 (241)
+-+||+.+.+|+|+++++++.+.+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 4589999999999999999888765544
No 17
>PHA02246 hypothetical protein
Probab=91.96 E-value=4.4 Score=33.65 Aligned_cols=165 Identities=17% Similarity=0.195 Sum_probs=85.1
Q ss_pred hhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCC--CeEEehhhHHHHHHHHHHHHHhhhccCch
Q 044881 5 LFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPH--SILVITINGSGTAIEVVYIILFVLHSDKK 82 (241)
Q Consensus 5 v~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~--~~~li~~N~~G~~l~~~y~~v~~~y~~~~ 82 (241)
+.......|++..+.|.|+++++|-. |+-.......-..|.+ +..+ .|.++.+ ..-+.+++..+.+- .|+++.
T Consensus 14 ilit~gYipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyNl--L~T~~~~fqi~sv-g~nl~lgivcLlv~-~~rkkd 88 (192)
T PHA02246 14 ILITVGYIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYNL--LLTDASVFQIVSV-GLNLTLGIVCLLVA-SYRKKD 88 (192)
T ss_pred HHHHhhhhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHHH--HhcCCceEEEeee-ehhhhhhhhheeee-hhhccc
Confidence 44556788999999999999998754 4444555667778887 4433 3444332 22233333333221 232222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhh
Q 044881 83 KRIKVMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANG 162 (241)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~ 162 (241)
- ....+ .+.++. ++ +...+...+.+.+| +. ...++-.+|+.+-+|||++|+.+...++.....-
T Consensus 89 ~---f~~~f---iiifSL-ll---fll~~~~evtQtVa---t~---tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL 152 (192)
T PHA02246 89 Y---FSIPF---IIVFSL-LL---FLLSDFTALTQTVA---TI---TIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGL 152 (192)
T ss_pred c---ccchH---HHHHHH-HH---HHHhhhHHHHHHHH---HH---HHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHH
Confidence 1 11111 111111 11 11222222333332 22 2334458999999999999999887765444333
Q ss_pred HHhhhhcccCCC--eeEEec---hhHHHHHHHHH
Q 044881 163 IAWTTYAFLPFD--QFIAIP---NGLGTLLGVAQ 191 (241)
Q Consensus 163 ~lW~~YG~l~~d--~~i~~~---N~~G~~l~~~q 191 (241)
. -........+ .++++. |.+=++.+..|
T Consensus 153 ~-~L~~~m~Lthv~~hIiiTEf~N~iLiLiCy~q 185 (192)
T PHA02246 153 A-SLIVSMVLTHTYVHIIATEFVNFVLILICYLQ 185 (192)
T ss_pred H-HHHHHHhhhCCcceeeHHHHHHHHHHHHHHHH
Confidence 2 2334444433 345544 66555555554
No 18
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=90.29 E-value=0.22 Score=39.28 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=52.3
Q ss_pred hCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCch
Q 044881 21 KGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDKK 82 (241)
Q Consensus 21 ~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~~ 82 (241)
+|..+.+|..+-..+++.+.+|++|.+ .+++.++.++.+|++=...+.+.+.=++.|....
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~ 99 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQ 99 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999999999999999999999998 3556677899999999999999988777775443
No 19
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.03 E-value=0.43 Score=37.02 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=50.3
Q ss_pred hCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhcc
Q 044881 21 KGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHS 79 (241)
Q Consensus 21 ~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~ 79 (241)
+|..+.+|............+|..|.+ ++++.++.++.+|.+=...+++++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999998 3445567799999999999999998888883
No 20
>PHA02246 hypothetical protein
Probab=86.80 E-value=3.6 Score=34.16 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=39.3
Q ss_pred eehhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHH
Q 044881 3 ISLFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAI 67 (241)
Q Consensus 3 ~sv~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l 67 (241)
+++...++.+||+.+-+|+|+.++.|+.-|+..-..-.+=..-=. +++-..-++.+-..-..+
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m~--Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSMV--LTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHHh--hhCCcceeeHHHHHHHHH
Confidence 456677889999999999999999998877654443332222222 333334455554444433
No 21
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.15 E-value=0.27 Score=38.12 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=49.6
Q ss_pred cCCcccchhHHHHHHHHhhHHhhhhcccC--CCeeEEechhHHHHHHHHHhhheeEEe
Q 044881 144 TKSVEYMPFFLSLMSLANGIAWTTYAFLP--FDQFIAIPNGLGTLLGVAQVILYACYY 199 (241)
Q Consensus 144 tkst~~i~~~~~~~~~~n~~lW~~YG~l~--~d~~i~~~N~~G~~l~~~ql~l~~~y~ 199 (241)
.|..|.++.....+-+..++.|.-|+..+ +|+.++..|+.=.+-+..|+.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999987 689999999998899999998887773
No 22
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=82.01 E-value=1.7 Score=37.59 Aligned_cols=74 Identities=8% Similarity=0.046 Sum_probs=62.9
Q ss_pred HHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCch
Q 044881 7 LFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDKK 82 (241)
Q Consensus 7 ~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~~ 82 (241)
...+-++|+.+-+|+|+||+.|.+...+-+..|..=+.|.. ..++++-+...-....+++....+-.++|.++.
T Consensus 153 ~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARiftsi--q~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~ 226 (230)
T KOG3211|consen 153 VVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTSI--QETGDFLMLLRFVISLALNGLITAQVLRYWSTA 226 (230)
T ss_pred hhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHHH--HhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 44678999999999999999999999999999999999998 666778788888888888888877777775443
No 23
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=78.73 E-value=26 Score=32.17 Aligned_cols=138 Identities=10% Similarity=0.088 Sum_probs=66.7
Q ss_pred hccHHHHHHHHHhCCCCCcCchhHHH--------HHHHHH-HHHHHhcccccC--------CCeEEeh----hhHHHHHH
Q 044881 9 LSPVPTFVEIVKKGTVEQYSAAPYLA--------TLLNCM-VWVLYGLPMVHP--------HSILVIT----INGSGTAI 67 (241)
Q Consensus 9 ~Splp~~~~I~k~kstg~~s~~p~~~--------~~~n~~-lWl~YG~~~l~~--------~~~~li~----~N~~G~~l 67 (241)
.|..||++-=+|+||+.++|..-... ...|+. .|..+ +++ ...|+.. -..=++++
T Consensus 137 ISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~----iq~~y~~~~p~g~~pv~~nDv~fslHa~lm 212 (372)
T KOG3145|consen 137 ISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPK----IQNQYDTSYPLGVPPVTLNDVVFSLHAVLM 212 (372)
T ss_pred eeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHH----hccceeccCCCCCCccchhhhhhhHHHHHH
Confidence 47789999999999999887653322 122222 22211 111 1223221 12345666
Q ss_pred HHHHHHHhhhccCchhHHH---HHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhcc
Q 044881 68 EVVYIILFVLHSDKKKRIK---VMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITT 144 (241)
Q Consensus 68 ~~~y~~v~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Vikt 144 (241)
.++.+.--..|++..+|.. .++.+.+...+........+...-.-=+-...+.++=..++.+=| +||.+.-.++
T Consensus 213 t~Iti~Qc~~yeR~~q~vs~~ialgil~i~~~f~~~~~~va~~~~~~wL~f~~~~syiKl~mTliKY---iPQa~mN~tR 289 (372)
T KOG3145|consen 213 TVITILQCFFYERGWQRVSKGIALGILAIFWLFAVVFMYVAYWYVIRWLAFLNNLSYIKLAMTLIKY---IPQAYMNFTR 289 (372)
T ss_pred HHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHhhccee
Confidence 6666666667777766431 111111111111111111111100000112233333444444444 7888888999
Q ss_pred CCcccchhH
Q 044881 145 KSVEYMPFF 153 (241)
Q Consensus 145 kst~~i~~~ 153 (241)
||+++-|..
T Consensus 290 KSt~gwsIg 298 (372)
T KOG3145|consen 290 KSTVGWSIG 298 (372)
T ss_pred ccccccccc
Confidence 999887643
No 24
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=76.98 E-value=4.8 Score=36.05 Aligned_cols=58 Identities=19% Similarity=0.084 Sum_probs=43.7
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccCC
Q 044881 113 KQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLPF 173 (241)
Q Consensus 113 ~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~ 173 (241)
+.....+|.+..++....+ .||+.+..|+|+.+++|....+...+..+.=.+|..+.+
T Consensus 6 ~~~s~~~g~ls~~~w~v~~---iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~ 63 (260)
T KOG2913|consen 6 DTLSTILGILSTVCWCVQL---IPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQP 63 (260)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhcc
Confidence 3444555655555555444 899999999999999999998888887777777776655
No 25
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=76.30 E-value=42 Score=27.66 Aligned_cols=126 Identities=10% Similarity=0.142 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044881 32 YLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDKKKRIKVMLVVLVEVIFVALVALLVLTLLHS 111 (241)
Q Consensus 32 ~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (241)
.......|.++...-. +.+. + +=+.+..++..-..+-.++.+ +. ... .+..... ......
T Consensus 29 ~~~~~~~~~~~~ihf~--LLGa-~----taa~~~~ls~~R~~~s~~~~~---~~-v~~-~Fi~~~~-----~~~~~~--- 88 (163)
T PF10688_consen 29 LLLQAISCLLFAIHFA--LLGA-W----TAALSMLLSAVRNFVSIRTRS---RW-VMA-VFIALSL-----VMGLFT--- 88 (163)
T ss_pred HHHHHHHHHHHHHHHH--HhCh-H----HHHHHHHHHHHHHHHHHHhCC---HH-HHH-HHHHHHH-----HHHHHH---
Confidence 4455666666666665 4533 2 456666777777766665543 11 111 1111111 112222
Q ss_pred cchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHH
Q 044881 112 TKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQ 191 (241)
Q Consensus 112 ~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~q 191 (241)
.+.....++.+|++...... .++ +++. +=...++++.+|.+|+++.++++-..-|...+..+.+.
T Consensus 89 ~~g~~~~l~~~as~~~t~a~----------f~~---~~~~--mR~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 89 WQGWIELLPYAASVLGTIAL----------FML---DGIK--MRILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred HhhHHHHHHHHHHHHHHHHH----------Hhc---Cchh--HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 23445577776666544322 111 2223 22467899999999999999998888888877766655
Q ss_pred h
Q 044881 192 V 192 (241)
Q Consensus 192 l 192 (241)
+
T Consensus 154 i 154 (163)
T PF10688_consen 154 I 154 (163)
T ss_pred H
Confidence 3
No 26
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=74.14 E-value=39 Score=31.29 Aligned_cols=167 Identities=8% Similarity=0.024 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCchhH-HHHHHHHHHH--HHHHHHHHHHHH
Q 044881 30 APYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDKKKR-IKVMLVVLVE--VIFVALVALLVL 106 (241)
Q Consensus 30 ~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~ 106 (241)
..|+.+..-+.+=-..|+ +.|+...++.+=+++=.++=+.-..+-.-..|++. .|.+.....+ +++.+. +++.+
T Consensus 114 ~~yl~~l~lA~iIA~iGL--l~nS~avIIGAMlIaPlmgPi~a~a~g~~~~d~~L~~rsl~~l~~g~~~ai~~~-~~~~~ 190 (325)
T TIGR00341 114 KGRSVVTILAGIIALSGL--IMNNAVILIGAMIIAPLLGPIHGFAVNLSVGDVKLAFRSAKNLLFDLFLVIVFS-TIFAM 190 (325)
T ss_pred HhHHHHHHHHHHHHHHhh--cccCHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 356666666677788998 77664444444444545555554444444444441 1222111111 111111 11222
Q ss_pred HH---hcccchh-hhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHH-------HHHhhHHhhhhcccCCCe
Q 044881 107 TL---LHSTKQR-SMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLM-------SLANGIAWTTYAFLPFDQ 175 (241)
Q Consensus 107 ~~---~~~~~~~-~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~-------~~~n~~lW~~YG~l~~d~ 175 (241)
.. ..+++.. +..-+....++.+ ++.........+.++ +.++-.+... ..--++.|--+....+-.
T Consensus 191 ~~~~~~~~~ei~~r~~p~~~~l~vAl---~aG~AGalsl~~~~s-~aLvGVaIAvaLvPPa~~~Gi~la~g~~~~a~ga~ 266 (325)
T TIGR00341 191 MIGLVQLTPQILSRTEVSPVSEILAV---LAGIAGILSLSSGIL-ESLAGVAISASLLPPAVATGILLVISPLPLAVKSL 266 (325)
T ss_pred HhccccCCHHHHHhcCCCHHHHHHHH---HHHHHHHHHHhhccc-cchHHHHHHHHhhchHHHHHHHHHhccHHHHHHHH
Confidence 11 1111111 1112222222222 233333444445444 4454433333 333334444444444555
Q ss_pred eEEechhHHHHHHHHHhhheeEEeCCcc
Q 044881 176 FIAIPNGLGTLLGVAQVILYACYYKSTK 203 (241)
Q Consensus 176 ~i~~~N~~G~~l~~~ql~l~~~y~~~~~ 203 (241)
.++..|.+|+.++..-.+.+.-|++++-
T Consensus 267 ~L~~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 267 ILTLINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 6778899999998877666666665543
No 27
>COG3952 Predicted membrane protein [Function unknown]
Probab=73.13 E-value=4.4 Score=31.33 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=51.9
Q ss_pred hhccCCcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHhhheeEEeCCcc
Q 044881 141 VITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVILYACYYKSTK 203 (241)
Q Consensus 141 Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~ 203 (241)
..+.++.+.+|.+---++.+.+.+-+.|-+-++|..-+..|++|+..++..+-+...-++.|+
T Consensus 47 ~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~~~~ 109 (113)
T COG3952 47 ASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERRWKP 109 (113)
T ss_pred HHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence 456778888899888999999999999999999998888999999988888766554444443
No 28
>TIGR02003 PTS-II-BC-unk1 PTS system, IIBC component. This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter.
Probab=69.92 E-value=10 Score=37.52 Aligned_cols=20 Identities=10% Similarity=0.072 Sum_probs=11.4
Q ss_pred CeeEEechhHHHHHHHHHhhhe
Q 044881 174 DQFIAIPNGLGTLLGVAQVILY 195 (241)
Q Consensus 174 d~~i~~~N~~G~~l~~~ql~l~ 195 (241)
+|..+++ +|++...+|-++|
T Consensus 412 ~~~~~~~--iGi~~~~iYy~vF 431 (548)
T TIGR02003 412 DLINFVI--VSILFAGIMFFIA 431 (548)
T ss_pred CchhHHH--HHHHHHHHHHHHH
Confidence 4544433 5777666665555
No 29
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=67.27 E-value=5.8 Score=32.84 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHH
Q 044881 33 LATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYII 73 (241)
Q Consensus 33 ~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~ 73 (241)
...+.++.+|+.|++ +.++ +|....|......+.+.+.
T Consensus 118 ~~~l~~~~~w~~~n~--~igS-~~g~l~e~~~~~~n~~~i~ 155 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNI--LIGS-WGGTLMEALFIISNLITIY 155 (163)
T ss_pred HHHHHHHHHHHHHHH--HHcC-HHHHHHHHHHHHHHHHHHH
Confidence 468899999999998 7754 7788888888888775543
No 30
>PF15102 TMEM154: TMEM154 protein family
Probab=66.87 E-value=6.1 Score=32.32 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=24.6
Q ss_pred eEEechhHHHHHHHHHhhheeEEeCCcchhhhhhccC
Q 044881 176 FIAIPNGLGTLLGVAQVILYACYYKSTKRQMAARQGK 212 (241)
Q Consensus 176 ~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~ 212 (241)
+|++|-+++.++-+.-+.+..+|+|++.++...+++.
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gs 96 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGS 96 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCCCCccccc
Confidence 4567877776666666777777877776665555555
No 31
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.88 E-value=24 Score=32.92 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHhhHHhhhhcccCCCeeEEechhHHH
Q 044881 159 LANGIAWTTYAFLPFDQFIAIPNGLGT 185 (241)
Q Consensus 159 ~~n~~lW~~YG~l~~d~~i~~~N~~G~ 185 (241)
++-++.|++||=-.+ +=++||+.--
T Consensus 241 ILF~I~~il~~g~~g--~W~FPNL~eD 265 (372)
T KOG2927|consen 241 ILFGITWILTGGKHG--FWLFPNLTED 265 (372)
T ss_pred HHHHHHHHHhCCCCc--eEeccchhhh
Confidence 455678998884333 4578998644
No 32
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=56.57 E-value=2.2e+02 Score=28.47 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=70.8
Q ss_pred ehhHHhccHHHHHHHHHhCCCCCcCchhHHHHHHHHH--HHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCc
Q 044881 4 SLFLFLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCM--VWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDK 81 (241)
Q Consensus 4 sv~~~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~--lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~ 81 (241)
|-.|+.-..-.+.|++++|+ ++++.-.+....+-+. +=..=|. +.++ ..+...-.+--++.+.++...++|...
T Consensus 346 t~fmyvi~~L~~lkiyq~RH-~di~a~a~~~f~~~av~i~~~~~gv--~~~~-~~f~iiF~ii~i~~~~~ls~q~Yy~g~ 421 (570)
T PF13965_consen 346 TSFMYVIAGLCMLKIYQKRH-PDINASAYAAFAVFAVVIFLGLIGV--LEKS-SIFWIIFSIIHILSCFFLSLQIYYMGR 421 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHHHHHHHhhhh--eecc-ceehhHHHHHHHHHHHHHHhhheeeee
Confidence 34566666677889999999 6664444432211111 1111232 2222 122222222223333344444444333
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHH
Q 044881 82 K-KRIKVMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLA 160 (241)
Q Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~ 160 (241)
. .+.|+..... ..+-++... +. ...+..|-....++.. +.++++|+.- +-+.|=++.|.+...+.+...+
T Consensus 422 ~~~~~r~~~l~~-~i~N~~~~~-~g-l~~~~~df~~~~l~i~--i~n~~lY~~f----YiimKi~~~E~i~~~~~~~~~~ 492 (570)
T PF13965_consen 422 WKLKSRFFLLVL-NIINWALAI-YG-LISSPRDFASFLLAIF--IGNLLLYLFF----YIIMKIRHREKILLKPIIYLVL 492 (570)
T ss_pred ccccchhhhhhH-HHHHHHHHH-HH-HhcCcCcHHHHHHHHH--HHHHHHHHHH----HHHHHHhhcChhHHHHHHHHHH
Confidence 2 2223321111 111111111 11 1223345555566655 5777777543 3334446667777888888888
Q ss_pred hhHHhhh
Q 044881 161 NGIAWTT 167 (241)
Q Consensus 161 n~~lW~~ 167 (241)
..+.|..
T Consensus 493 ~~~~W~~ 499 (570)
T PF13965_consen 493 AFVSWGF 499 (570)
T ss_pred HHHHHHH
Confidence 8888854
No 33
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=55.98 E-value=2.3e+02 Score=28.46 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=34.8
Q ss_pred HhccHHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHH
Q 044881 8 FLSPVPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEV 69 (241)
Q Consensus 8 ~~Splp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~ 69 (241)
+..|...+.+.+-.=+-++++|.|+++.++ ++.+|+ |.+| . .-|+++.+
T Consensus 325 ~~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFGm--M~gD-~------GyGLil~l 373 (646)
T PRK05771 325 FIKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFGM--MLGD-A------GYGLLLLL 373 (646)
T ss_pred hhhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHHH--HHHh-H------HHHHHHHH
Confidence 355677777777777788899999887654 688897 7766 2 45666655
No 34
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=54.58 E-value=5 Score=36.56 Aligned_cols=86 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccC-CCeeEEechhHHHHHHHHHhhh
Q 044881 116 SMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLP-FDQFIAIPNGLGTLLGVAQVIL 194 (241)
Q Consensus 116 ~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~-~d~~i~~~N~~G~~l~~~ql~l 194 (241)
..++|++--++.+.+.+.-.-.++ .+|+--++.-.+..++..|+-.++-++-..+. .+||-+..-..=+++-+. .+
T Consensus 104 ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFla--iL 180 (381)
T PF05297_consen 104 TLFVGIVILFLCCLLALGVWFYMW-LLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLA--IL 180 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 456676544433333222222233 55555554444444555555555555555543 567766555444432222 23
Q ss_pred eeEEeCCcch
Q 044881 195 YACYYKSTKR 204 (241)
Q Consensus 195 ~~~y~~~~~~ 204 (241)
.|+|-...++
T Consensus 181 IWlY~H~~~~ 190 (381)
T PF05297_consen 181 IWLYVHDQRH 190 (381)
T ss_dssp ----------
T ss_pred HHHHhcCCCC
Confidence 3556555443
No 35
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=54.24 E-value=45 Score=32.76 Aligned_cols=30 Identities=10% Similarity=0.172 Sum_probs=15.3
Q ss_pred HHhhhhcccC---CCeeEEechhHHHHHHHHHhhh
Q 044881 163 IAWTTYAFLP---FDQFIAIPNGLGTLLGVAQVIL 194 (241)
Q Consensus 163 ~lW~~YG~l~---~d~~i~~~N~~G~~l~~~ql~l 194 (241)
+=+++|+.+- .+|+.++ .+|++...+|-++
T Consensus 373 id~~~~~~~~~~~~~~~~~~--~vGi~~~~iyy~v 405 (517)
T TIGR02004 373 IDFLVFGVLQGTYTKWYLVP--IVAAIWFVVYYFV 405 (517)
T ss_pred HHHHHhccccccccCchhhH--HHHHHHHHHHHHH
Confidence 3355566543 4554443 4566555555433
No 36
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=53.69 E-value=72 Score=31.21 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=16.4
Q ss_pred echhHHHHHHHHHhhheeEEeCCcchhh
Q 044881 179 IPNGLGTLLGVAQVILYACYYKSTKRQM 206 (241)
Q Consensus 179 ~~N~~G~~l~~~ql~l~~~y~~~~~~~~ 206 (241)
.|..+.+++.+..+++.+.+-++.++..
T Consensus 209 ap~w~m~i~~i~~~v~i~~~f~E~~~~~ 236 (488)
T KOG2325|consen 209 APAWLMAILWIIYIVIILFFFKEVYRGI 236 (488)
T ss_pred hHHHHHHHHHHHHHHHHHhheeecccCc
Confidence 4566777777777666655544444333
No 37
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=50.55 E-value=28 Score=25.08 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=34.8
Q ss_pred CcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHH
Q 044881 146 SVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGV 189 (241)
Q Consensus 146 st~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~ 189 (241)
..+.+|..--..+...+++=++||+.++|...++....|.+...
T Consensus 24 k~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 24 KKSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIYI 67 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHHH
Confidence 33456777778899999999999999999877777777776443
No 38
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=49.30 E-value=42 Score=34.16 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=35.7
Q ss_pred CeeEEechhHHHHHHHHHhhheeEEeCCcchhhhhhccC--CCcccceeEeccCCCCCccccccccC
Q 044881 174 DQFIAIPNGLGTLLGVAQVILYACYYKSTKRQMAARQGK--GQVDLSAVVVSESDSGDSKKIGTAVG 238 (241)
Q Consensus 174 d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (241)
|..-......|+.++.....+|.+-.-.-=++++|..+| +.+| ..+.||||.....|+|-||
T Consensus 151 ~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGADLVGKVE---agIPEDDPRNPAvIADnVG 214 (682)
T PF03030_consen 151 NPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGADLVGKVE---AGIPEDDPRNPAVIADNVG 214 (682)
T ss_dssp -HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---S---TT-TT-TTHHHHHHH
T ss_pred chhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhhHHHHHHh---hCCCCCCcccchHHHHHHH
Confidence 333445578899999999988876443333445555443 1111 2356799988888888776
No 39
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=43.90 E-value=50 Score=29.46 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=33.6
Q ss_pred ccchhHHHHHHHHhh---HHhhhhcccCC---CeeEEechhHHHHHHHHHhhheeEEeCC
Q 044881 148 EYMPFFLSLMSLANG---IAWTTYAFLPF---DQFIAIPNGLGTLLGVAQVILYACYYKS 201 (241)
Q Consensus 148 ~~i~~~~~~~~~~n~---~lW~~YG~l~~---d~~i~~~N~~G~~l~~~ql~l~~~y~~~ 201 (241)
-++...+.+-+..|+ -.|..||+.-. +..--.-|.+|+.+.++-..+|..-+.+
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 455555555555554 34555777632 2233345999999999998888654433
No 40
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=41.20 E-value=29 Score=26.29 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=37.4
Q ss_pred hHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHhhheeEEeCCcchhhhh
Q 044881 152 FFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVILYACYYKSTKRQMAA 208 (241)
Q Consensus 152 ~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~ 208 (241)
+.|.+...+..++=.++..+.+|.-+..--..|.+.++....++=.+.|+.++..|+
T Consensus 35 ~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~ 91 (93)
T PF06946_consen 35 WIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGED 91 (93)
T ss_pred hhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcC
Confidence 455555566666666777777776444444668888888888887777655544443
No 41
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=40.81 E-value=1.2e+02 Score=25.62 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=29.2
Q ss_pred HHHHhhHHhhhhc---ccC-CCeeEEechhHHHHHHHHHhhheeEEeCCc
Q 044881 157 MSLANGIAWTTYA---FLP-FDQFIAIPNGLGTLLGVAQVILYACYYKST 202 (241)
Q Consensus 157 ~~~~n~~lW~~YG---~l~-~d~~i~~~N~~G~~l~~~ql~l~~~y~~~~ 202 (241)
...+..++|+.-- .+. ....+.+|+...++++.+-.++++.+++|-
T Consensus 152 ~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 152 ISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445664222 222 334567899999999999988887666543
No 42
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=39.18 E-value=2.6e+02 Score=24.28 Aligned_cols=23 Identities=4% Similarity=0.169 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhh
Q 044881 115 RSMAVGIICILFNIMMYASPLSV 137 (241)
Q Consensus 115 ~~~~lG~~a~~~si~~~~sPL~~ 137 (241)
....+|+.+.+...+.++..+..
T Consensus 96 lHSwlGl~t~~L~~lQ~~~Gf~~ 118 (214)
T cd08764 96 LHSWLGLTAVILFSLQWVGGFVS 118 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777776666655555543
No 43
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=38.19 E-value=4.6e+02 Score=26.85 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHhCCCCCc
Q 044881 10 SPVPTFVEIVKKGTVEQY 27 (241)
Q Consensus 10 Splp~~~~I~k~kstg~~ 27 (241)
.-+|.+....+++..+.-
T Consensus 230 ~llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 230 LLLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHHHhCCCccCC
Confidence 457888998888887775
No 44
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=36.55 E-value=48 Score=23.89 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHH
Q 044881 12 VPTFVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEV 69 (241)
Q Consensus 12 lp~~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~ 69 (241)
+-|-..-.|+|. ..++..-...-+..+.+=+.||+ ..+| ++++....+|.+...
T Consensus 14 ~~QW~~SEk~k~-sv~P~~FW~lSl~Gs~lll~Y~i--~r~D-pV~ilgq~~gl~iy~ 67 (72)
T PF07578_consen 14 IVQWIYSEKAKK-SVVPVAFWYLSLIGSLLLLIYAI--IRKD-PVFILGQSFGLFIYI 67 (72)
T ss_pred HHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHH--HHcC-hHHHHHHhcChHHHH
Confidence 444444455554 23444444688899999999998 7655 555666666655543
No 45
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=33.20 E-value=3.3e+02 Score=26.25 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=40.7
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhH----HHHHHHHHHHhhhhhhhhhhhc
Q 044881 68 EVVYIILFVLHSDKKKRIKVMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGI----ICILFNIMMYASPLSVMKLVIT 143 (241)
Q Consensus 68 ~~~y~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~----~a~~~si~~~~sPL~~i~~Vik 143 (241)
.+.+++.|+.=.-++.|.+-.+.+++++++...+.++... .|.......+ .|++..+..| ...+.|
T Consensus 306 ~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSl----SEhi~F~~AYliAa~a~i~Li~~Y------~~~vl~ 375 (430)
T PF06123_consen 306 GLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSL----SEHIGFNLAYLIAALACIGLISLY------LSSVLK 375 (430)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH----HhhhchHHHHHHHHHHHHHHHHHH------HHHHHh
Confidence 3334444443222233333334445555555544443322 1333333333 3334444444 345666
Q ss_pred cCCcccchhHHHHHHHHhhHHhhhhcccC-CCeeEE
Q 044881 144 TKSVEYMPFFLSLMSLANGIAWTTYAFLP-FDQFIA 178 (241)
Q Consensus 144 tkst~~i~~~~~~~~~~n~~lW~~YG~l~-~d~~i~ 178 (241)
.|.. ...++..+..+==++|+++. +|.-++
T Consensus 376 ~~k~-----~~~~~~~L~~LY~~Ly~lLq~EdyALL 406 (430)
T PF06123_consen 376 SWKR-----GLIFAGLLAALYGFLYVLLQSEDYALL 406 (430)
T ss_pred cchH-----HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 6553 22233333333344555554 565443
No 46
>COG5196 ERD2 ER lumen protein retaining receptor [Intracellular trafficking and secretion]
Probab=33.02 E-value=3.1e+02 Score=23.33 Aligned_cols=64 Identities=14% Similarity=0.131 Sum_probs=42.6
Q ss_pred hhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHhhhe
Q 044881 132 ASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVILY 195 (241)
Q Consensus 132 ~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~ 195 (241)
.+-|||+....|...+|++...-.+++.+--.+.+-|.+.+.-.-+-=..-+.+..+.+|-.+|
T Consensus 130 VAILPQL~mLq~~GeteslT~hYvfamgLYRalYip~wI~r~~~~~kk~~~iai~aGivQTlLY 193 (214)
T COG5196 130 VAILPQLVMLQEAGETESLTSHYVFAMGLYRALYIPYWILRKVYDIKKTGNIAIAAGIVQTLLY 193 (214)
T ss_pred HHHHHHHHHHHhcCCcceeHHHHHHHHHHHHHhhhhHHHHHhhhcccccccchhHHHHHHHHHH
Confidence 4558999999999999999888888887777777777776532211111223344555566555
No 47
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=32.25 E-value=1.1e+02 Score=30.13 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=16.5
Q ss_pred HHhhhhcccC---CCeeEEechhHHHHHHHHHhhhe
Q 044881 163 IAWTTYAFLP---FDQFIAIPNGLGTLLGVAQVILY 195 (241)
Q Consensus 163 ~lW~~YG~l~---~d~~i~~~N~~G~~l~~~ql~l~ 195 (241)
+=|++||.+- .+|+.+. .+|++...+|-++|
T Consensus 382 id~i~~~~~~~~~~~~~~~~--~~g~~~~~iyy~vF 415 (530)
T PRK10110 382 IDFVVFGILHGLSTKWYMVP--VVAAIWFVVYYVIF 415 (530)
T ss_pred HHHHHhccccccccCchhHH--HHHHHHHHHHHHHH
Confidence 4466667654 4554433 45666555554443
No 48
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=31.48 E-value=1.9e+02 Score=28.37 Aligned_cols=35 Identities=11% Similarity=0.232 Sum_probs=24.8
Q ss_pred hhhhhhccCCcccchhHHHHHHHHhhHHhhhhccc
Q 044881 137 VMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFL 171 (241)
Q Consensus 137 ~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l 171 (241)
-..+|+..|+.+.-+..-+..+++..++++=|=-+
T Consensus 185 Y~vrIl~~~~~dy~~IV~yA~SlvDaLLFiHYlav 219 (505)
T PF06638_consen 185 YGVRILDPRESDYQGIVSYAVSLVDALLFIHYLAV 219 (505)
T ss_pred hhheeeechhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777778888888777643
No 49
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=31.43 E-value=6.6e+02 Score=26.66 Aligned_cols=18 Identities=33% Similarity=0.682 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 044881 34 ATLLNCMVWVLYGLPMVHPH 53 (241)
Q Consensus 34 ~~~~n~~lWl~YG~~~l~~~ 53 (241)
-..+.|.+|.+|=. +...
T Consensus 87 YI~~~~l~W~lYfa--v~~r 104 (1318)
T KOG3618|consen 87 YIGFACLLWSLYFA--VHMR 104 (1318)
T ss_pred HHHHHHHHHHHHhe--eccC
Confidence 35567899999987 5543
No 50
>PRK11715 inner membrane protein; Provisional
Probab=30.52 E-value=3.5e+02 Score=26.15 Aligned_cols=84 Identities=18% Similarity=0.155 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhH
Q 044881 84 RIKVMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGI 163 (241)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~ 163 (241)
|.+-.+.+++++++...+.++....-|-.=...-.+...+++..+..|+ ..++|.+.. ...++..+.++
T Consensus 328 ~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~------~~vl~~~k~-----g~~~~~~L~~L 396 (436)
T PRK11715 328 RIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYL------SAVLRSWKR-----GLLFAAALAAL 396 (436)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH------HHHHhcchH-----HHHHHHHHHHH
Confidence 3333344455555555444433332121112233344445555555553 345555542 22333444444
Q ss_pred HhhhhcccC-CCeeEE
Q 044881 164 AWTTYAFLP-FDQFIA 178 (241)
Q Consensus 164 lW~~YG~l~-~d~~i~ 178 (241)
==++|+++. +|.-++
T Consensus 397 Yg~Ly~lLq~EDyALL 412 (436)
T PRK11715 397 YGVLYGLLQSEDYALL 412 (436)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 444566664 565544
No 51
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=29.86 E-value=77 Score=31.43 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=25.2
Q ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHH-----HHHhhHHhhhhcccC
Q 044881 115 RSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLM-----SLANGIAWTTYAFLP 172 (241)
Q Consensus 115 ~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~-----~~~n~~lW~~YG~l~ 172 (241)
...+++ +|.+.....|..|+ +-|...+|+ +.-|-+..+. .-.-+++|..+-...
T Consensus 416 f~Alfs-~a~i~l~~Ay~iP~--~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vi 474 (550)
T KOG1289|consen 416 FNALFS-AAAIALFIAYAIPI--FCRLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVI 474 (550)
T ss_pred HHHHHH-HHHHHHHHHHHHhH--Hhheeeccc-ccCCCCccccccccchHHHHHHHHHHHHHH
Confidence 334444 44455555566554 456666665 3322222110 112226787776543
No 52
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=29.23 E-value=5.2e+02 Score=24.84 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=22.1
Q ss_pred hccCCcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHh
Q 044881 142 ITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQV 192 (241)
Q Consensus 142 iktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql 192 (241)
..+|.++.=-+.-.+.+......|..++.. -..+...|++++.+-.
T Consensus 421 ~wkr~t~~ga~~g~i~G~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 466 (502)
T PRK15419 421 MWSRMTRNGALAGMIIGALTVIVWKQFGWL-----GLYEIIPGFIFGSIGI 466 (502)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHhhhc-----chhHhHHHHHHHHHHH
Confidence 334433332333334555555677655422 1234556666666443
No 53
>PRK11387 S-methylmethionine transporter; Provisional
Probab=28.81 E-value=1.6e+02 Score=27.87 Aligned_cols=26 Identities=8% Similarity=-0.138 Sum_probs=14.1
Q ss_pred hHHHHHHHHHhhheeEEeCCcchhhh
Q 044881 182 GLGTLLGVAQVILYACYYKSTKRQMA 207 (241)
Q Consensus 182 ~~G~~l~~~ql~l~~~y~~~~~~~~~ 207 (241)
.+|..+-.+-+..|..++|++++...
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T PRK11387 439 WCGIPFVALCYGAYYLTQRLKRNMTQ 464 (471)
T ss_pred HHHHHHHHHHHHHHHHhccccccccH
Confidence 34555555556666666665544433
No 54
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=28.36 E-value=3e+02 Score=28.06 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=33.2
Q ss_pred echhHHHHHHHHHhhheeEEeCCcchhhhhhccCCCcccceeE--eccCCCCCccccccccC
Q 044881 179 IPNGLGTLLGVAQVILYACYYKSTKRQMAARQGKGQVDLSAVV--VSESDSGDSKKIGTAVG 238 (241)
Q Consensus 179 ~~N~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 238 (241)
..-..|+.++...+.+|.+-...-=++++|..+| =.+||| +.||||-..--|+|.||
T Consensus 137 ~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGAD---LVGKVEagIPEDDPRNPavIADnVG 195 (666)
T PRK00733 137 PDALVGFGFGASLIALFARVGGGIFTKAADVGAD---LVGKVEAGIPEDDPRNPAVIADNVG 195 (666)
T ss_pred hHHHHHhhhhHHHHHHHHHhcccceecccccchh---hhhhhhcCCCCCCCCCcchHHHhhc
Confidence 3468888888888888876444333344444322 113333 34677766666666665
No 55
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=27.53 E-value=1.4e+02 Score=27.69 Aligned_cols=53 Identities=15% Similarity=-0.006 Sum_probs=35.7
Q ss_pred CchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccCchh
Q 044881 28 SAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSDKKK 83 (241)
Q Consensus 28 s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~~~~ 83 (241)
+..|..+.+.-+..|-.|.. ..+ ...++.+|..|+.++..-.+.++.|.+.+.
T Consensus 242 aLvPPa~~~Gi~la~g~~~~--a~g-a~~L~~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 242 SLLPPAVATGILLVISPLPL--AVK-SLILTLINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred HhhchHHHHHHHHHhccHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 44555555555555555444 332 355889999999999988887777776554
No 56
>PHA03049 IMV membrane protein; Provisional
Probab=27.37 E-value=23 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhheeEEeCCcchhhhhh
Q 044881 183 LGTLLGVAQVILYACYYKSTKRQMAAR 209 (241)
Q Consensus 183 ~G~~l~~~ql~l~~~y~~~~~~~~~~~ 209 (241)
+++....+-+.+|-+|+|++.++.-..
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~~~p 34 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQNPP 34 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCC
Confidence 344555677889999998776554443
No 57
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=27.29 E-value=28 Score=24.00 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=12.8
Q ss_pred CCCCccccccccCCC
Q 044881 226 DSGDSKKIGTAVGGG 240 (241)
Q Consensus 226 ~~~~~~~~~~~~~~~ 240 (241)
..+|+.|+=++||||
T Consensus 51 ~~gD~ieIv~~VgGG 65 (65)
T PRK05863 51 RDGARLEVVTAVQGG 65 (65)
T ss_pred CCCCEEEEEeeccCC
Confidence 356999999999998
No 58
>PRK10429 melibiose:sodium symporter; Provisional
Probab=27.12 E-value=4.8e+02 Score=24.47 Aligned_cols=11 Identities=9% Similarity=-0.100 Sum_probs=6.3
Q ss_pred eEEeCCcchhh
Q 044881 196 ACYYKSTKRQM 206 (241)
Q Consensus 196 ~~y~~~~~~~~ 206 (241)
..|+-++++.+
T Consensus 431 ~~y~l~~~~~~ 441 (473)
T PRK10429 431 RYYRLNGDFLR 441 (473)
T ss_pred HheeCCHHHHH
Confidence 46877555433
No 59
>PRK15049 L-asparagine permease; Provisional
Probab=26.82 E-value=2.5e+02 Score=27.10 Aligned_cols=23 Identities=17% Similarity=-0.120 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhh
Q 044881 117 MAVGIICILFNIMMYASPLSVMK 139 (241)
Q Consensus 117 ~~lG~~a~~~si~~~~sPL~~i~ 139 (241)
+.+--++++.....|+.+.....
T Consensus 379 ~~l~~~~~~~~li~y~~~~~~~l 401 (499)
T PRK15049 379 EIVLNFASLGIIASWAFIIVCQM 401 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555666666655443
No 60
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=26.38 E-value=3.8e+02 Score=24.81 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=62.0
Q ss_pred ehhhHHHHHHHHHHHHHhhhccCc----hhHHHHHHHHHHHHHHHHHH-HHHHHHHhcccc-----hhhhhhhHHHHHHH
Q 044881 58 ITINGSGTAIEVVYIILFVLHSDK----KKRIKVMLVVLVEVIFVALV-ALLVLTLLHSTK-----QRSMAVGIICILFN 127 (241)
Q Consensus 58 i~~N~~G~~l~~~y~~v~~~y~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~lG~~a~~~s 127 (241)
+=.|+.+.+.++..+.+.=+.=.. .+-.+...+..+...+...+ .++.+. +.+.+ ...-..|++|.+..
T Consensus 76 ie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~-it~n~v~L~~~i~G~~gilaGilV 154 (326)
T KOG2890|consen 76 IELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYM-ITDNHVYLYIPIHGTTGILAGILV 154 (326)
T ss_pred hhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHH-HhcCceEEEEEeccchHHHHHHHH
Confidence 346778888888777766543211 11112222222222222222 222222 22211 12334444444443
Q ss_pred HHHHhhhhhhhhhhhccCCcc----cchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHhhheeEEeC
Q 044881 128 IMMYASPLSVMKLVITTKSVE----YMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVILYACYYK 200 (241)
Q Consensus 128 i~~~~sPL~~i~~Viktkst~----~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l~~~y~~ 200 (241)
..= -+.--..|+++|..+ -+|+.+.+.+++-++.|+.++.- ...+..+..-.-.|++|..
T Consensus 155 a~k---Qllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~----------l~s~~~g~~~sWtYLRfyq 218 (326)
T KOG2890|consen 155 AWK---QLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFAS----------LPSITFGVLVSWTYLRFYQ 218 (326)
T ss_pred HHH---HHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhh----------hHHHHHhhhhhhhhheecc
Confidence 321 122223445555444 46888999999999999877642 3333344444455666653
No 61
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=25.85 E-value=76 Score=20.24 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=11.0
Q ss_pred HHHHHHHHhhheeEEeCCc
Q 044881 184 GTLLGVAQVILYACYYKST 202 (241)
Q Consensus 184 G~~l~~~ql~l~~~y~~~~ 202 (241)
|.++-..-.++|++|+|+|
T Consensus 22 ~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred HHHHHHHHHHhheEEeccC
Confidence 3333344556777787764
No 62
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=25.27 E-value=2.9e+02 Score=26.41 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=14.1
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhhh
Q 044881 117 MAVGIICILFNIMMYASPLSVMKL 140 (241)
Q Consensus 117 ~~lG~~a~~~si~~~~sPL~~i~~ 140 (241)
..+-.++++..+..|+.+.....+
T Consensus 395 ~~l~~l~~~~~li~y~~~~~a~i~ 418 (496)
T PRK15238 395 NILTLMANVSMTLPYLFLAGAFPF 418 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666677666555544
No 63
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=24.66 E-value=3.5e+02 Score=26.60 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=68.1
Q ss_pred CchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhccC------chh--HHHHHHHHHHHHHHHH
Q 044881 28 SAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLHSD------KKK--RIKVMLVVLVEVIFVA 99 (241)
Q Consensus 28 s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y~~------~~~--~~~~~~~~~~~~~~~~ 99 (241)
|.-.+...+....++-.||+ .. -+..-..|..++++.-..-.+.-. ++. +.+........+....
T Consensus 165 NiGsl~~p~i~~~~~~~~g~--~~-----gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (498)
T COG3104 165 NIGSLIAPIITGLLAINYGW--HV-----GFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMI 237 (498)
T ss_pred ehHHHHHHHHHHHHHHhhCH--HH-----HHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHH
Confidence 45567788888899999998 22 367888999988876666543211 111 1111111111111111
Q ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhccCCcccchhHHHHHHHHhhHHhhhhcccC
Q 044881 100 LVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITTKSVEYMPFFLSLMSLANGIAWTTYAFLP 172 (241)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~ 172 (241)
.... .+...+.+....++..++....+..+.-.+..=+.- ++|+ --...+...+...+.|..|+-..
T Consensus 238 ~~~~--~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~---r~~~~~~Lfl~~~iFW~~~~Q~~ 304 (498)
T COG3104 238 LAAL--LTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERR---RLLAAIPLFLFAVIFWALYEQMG 304 (498)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHH---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 123333455566666666666665443222211111 1111 12445556677888999998654
No 64
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=24.34 E-value=5.2e+02 Score=23.17 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=9.6
Q ss_pred HHHHHHHHHhCCCC
Q 044881 12 VPTFVEIVKKGTVE 25 (241)
Q Consensus 12 lp~~~~I~k~kstg 25 (241)
.|-+.++-|+.+..
T Consensus 117 ~Pi~~~~~~~~~i~ 130 (351)
T PF03600_consen 117 IPIVLSLARKLGIP 130 (351)
T ss_pred HHHHHHHHHHcCCC
Confidence 37788888876643
No 65
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=23.32 E-value=34 Score=23.78 Aligned_cols=15 Identities=53% Similarity=0.682 Sum_probs=12.9
Q ss_pred CCCCccccccccCCC
Q 044881 226 DSGDSKKIGTAVGGG 240 (241)
Q Consensus 226 ~~~~~~~~~~~~~~~ 240 (241)
..+|+.|+=++||||
T Consensus 53 ~~gD~iEIv~~VgGG 67 (67)
T PRK07696 53 FDGDQIEIVTFVGGG 67 (67)
T ss_pred CCCCEEEEEEEecCC
Confidence 356999999999997
No 66
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=23.21 E-value=4.8e+02 Score=25.91 Aligned_cols=146 Identities=18% Similarity=0.100 Sum_probs=99.9
Q ss_pred HHHHHHhCCCCCcCchhHHHHHHHHHHHHHHhcccccC-CCeEEehhhHHHHHHHHHHHHH------------h------
Q 044881 15 FVEIVKKGTVEQYSAAPYLATLLNCMVWVLYGLPMVHP-HSILVITINGSGTAIEVVYIIL------------F------ 75 (241)
Q Consensus 15 ~~~I~k~kstg~~s~~p~~~~~~n~~lWl~YG~~~l~~-~~~~li~~N~~G~~l~~~y~~v------------~------ 75 (241)
+.=+.++||-+++|.-..+.-+++..+=..|=+ .+ .++.|..+-.+|+++.++=+-- .
T Consensus 340 IqFWn~rKsmeGLS~rsvl~~~F~s~IIflYll---DneTs~mVlvs~gvG~~IE~WKi~K~m~v~id~~g~i~gv~pRl 416 (592)
T KOG2489|consen 340 IQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYLL---DNETSFMVLVSVGVGLLIELWKIKKAMKVEIDWSGLIPGVLPRL 416 (592)
T ss_pred HHHhccccccccccHHHHHHHHHHHHhhhheee---cCCccEEEEEeccceeeeeeeecceEEEEEEecccccccccccc
Confidence 334678899999999999999999999888874 44 4677788888888877643311 1
Q ss_pred -----hhccCchhHH------HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHhhhhhhhhhhhcc
Q 044881 76 -----VLHSDKKKRI------KVMLVVLVEVIFVALVALLVLTLLHSTKQRSMAVGIICILFNIMMYASPLSVMKLVITT 144 (241)
Q Consensus 76 -----~~y~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~a~~~si~~~~sPL~~i~~Vikt 144 (241)
=.|+.++++. |-+..++ .-++..++.+.....+...=...++..+...+-.+-|+-.+||+---.|=
T Consensus 417 ~f~dkgsysE~~Tk~yD~~A~kYLs~~L--~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGFi~M~PQLFINYKL 494 (592)
T KOG2489|consen 417 SFSDKGSYSESKTKEYDDQAMKYLSYLL--FPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGFIFMLPQLFINYKL 494 (592)
T ss_pred cccccccccccchhHHHHHHHHHHHHHH--HHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHHHHhChHHHhhhhh
Confidence 1122222211 1221111 22223344455555554555577888888888778888899999999999
Q ss_pred CCcccchhHHHHHHHHhhHHh
Q 044881 145 KSVEYMPFFLSLMSLANGIAW 165 (241)
Q Consensus 145 kst~~i~~~~~~~~~~n~~lW 165 (241)
||.+.+|..+..=-++|.+.=
T Consensus 495 KSVAHLPWR~~tYKa~NTFID 515 (592)
T KOG2489|consen 495 KSVAHLPWRAFTYKAFNTFID 515 (592)
T ss_pred hhhhcCcHHHHHHHHHHHHHH
Confidence 999999999998888887643
No 67
>PRK10580 proY putative proline-specific permease; Provisional
Probab=22.20 E-value=2.9e+02 Score=25.99 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=17.7
Q ss_pred chhhhhhhHHHHHHHHHHHhhhhhhhhhhh
Q 044881 113 KQRSMAVGIICILFNIMMYASPLSVMKLVI 142 (241)
Q Consensus 113 ~~~~~~lG~~a~~~si~~~~sPL~~i~~Vi 142 (241)
++.-..+..+++...+..|..+.....+-.
T Consensus 354 ~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 354 ENVFLVIASLATFATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666667777777765544433
No 68
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.76 E-value=2.3e+02 Score=22.20 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=7.5
Q ss_pred hccCchhHHHHHHH
Q 044881 77 LHSDKKKRIKVMLV 90 (241)
Q Consensus 77 ~y~~~~~~~~~~~~ 90 (241)
+|+++=.|.|.++.
T Consensus 3 ~~~~KiN~~R~~al 16 (114)
T PF11023_consen 3 KYSSKINKIRTFAL 16 (114)
T ss_pred cchhHHHHHHHHHH
Confidence 45555555666643
No 69
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=21.29 E-value=5.2e+02 Score=22.01 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhccCCc----ccchhHHHHHHHHh
Q 044881 122 ICILFNIMMYASPLSVMKLVITTKSV----EYMPFFLSLMSLAN 161 (241)
Q Consensus 122 ~a~~~si~~~~sPL~~i~~Viktkst----~~i~~~~~~~~~~n 161 (241)
++......+-+.=+..+|+-++..+. ++.|..+..++...
T Consensus 137 lg~GlGf~lal~l~a~iRE~l~~~~vP~~~~G~pI~li~aglma 180 (190)
T TIGR01943 137 VGAGLGFTLAMVIFAGIRERLDLSDVPKAFRGSPIALITAGLMS 180 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCccccCcCHHHHHHHHHH
Confidence 44444444444446788999998887 88888777666554
No 70
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=21.23 E-value=5.1e+02 Score=25.01 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=6.6
Q ss_pred HHhhheeEEeCCc
Q 044881 190 AQVILYACYYKST 202 (241)
Q Consensus 190 ~ql~l~~~y~~~~ 202 (241)
+-...|..+.|+.
T Consensus 452 ~~~~~y~~~~~~~ 464 (507)
T TIGR00910 452 LPFIIYALHDKKG 464 (507)
T ss_pred HHHHHHHHhcccc
Confidence 3445555555543
No 71
>COG3952 Predicted membrane protein [Function unknown]
Probab=21.03 E-value=1.7e+02 Score=22.75 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=35.3
Q ss_pred CCcCchhHHHHHHHHHHHHHHhcccccCCCeEEehhhHHHHHHHHHHHHHhhhc
Q 044881 25 EQYSAAPYLATLLNCMVWVLYGLPMVHPHSILVITINGSGTAIEVVYIILFVLH 78 (241)
Q Consensus 25 g~~s~~p~~~~~~n~~lWl~YG~~~l~~~~~~li~~N~~G~~l~~~y~~v~~~y 78 (241)
..++..-.-+.+++..+-+.|-+ -..| ..-+..|+.|++.++.-+.+.++-
T Consensus 54 sv~P~~FW~~sllGg~l~L~Yfi--~~~D-pV~Vl~~~~glF~~l~nL~L~~ke 104 (113)
T COG3952 54 SVIPVLFWYFSLLGGLLLLSYFI--RRQD-PVFVLGQACGLFIYLRNLWLIIKE 104 (113)
T ss_pred CcchHHHHHHHHHhhHHHHHHHH--Hhcc-hHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444578889999999997 5555 434677888888888776666543
No 72
>PRK07440 hypothetical protein; Provisional
Probab=20.98 E-value=41 Score=23.67 Aligned_cols=27 Identities=41% Similarity=0.533 Sum_probs=19.4
Q ss_pred CcccceeEec------------cCCCCCccccccccCCC
Q 044881 214 QVDLSAVVVS------------ESDSGDSKKIGTAVGGG 240 (241)
Q Consensus 214 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 240 (241)
+++..++++. +=-.+|+.|+=++||||
T Consensus 32 ~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 32 NPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEEecCC
Confidence 5556666665 12346999999999997
No 73
>PRK02935 hypothetical protein; Provisional
Probab=20.78 E-value=3.1e+02 Score=21.29 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=7.4
Q ss_pred hccCchhHHHHHHH
Q 044881 77 LHSDKKKRIKVMLV 90 (241)
Q Consensus 77 ~y~~~~~~~~~~~~ 90 (241)
.|+++=.|.|.++.
T Consensus 4 k~ssKINkiRt~aL 17 (110)
T PRK02935 4 KYSNKINKIRTFAL 17 (110)
T ss_pred chhhHHHHHHHHHH
Confidence 35555455666543
No 74
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=20.62 E-value=6.8e+02 Score=25.48 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=15.4
Q ss_pred HhhhhcccC---CCeeEEechhHHHHHHHHHhhhe
Q 044881 164 AWTTYAFLP---FDQFIAIPNGLGTLLGVAQVILY 195 (241)
Q Consensus 164 lW~~YG~l~---~d~~i~~~N~~G~~l~~~ql~l~ 195 (241)
=|++|+.+. .+|.+++ .+|++...+|-++|
T Consensus 323 D~~~~~~~~~~~~~~~~~~--~vGi~~~~iYy~vF 355 (648)
T PRK10255 323 DYALMYNLPAASQNVWMLL--VMGVVFFAIYFVLF 355 (648)
T ss_pred HHHHhccccccccCceeeh--hHHHHHHHHHHHHH
Confidence 355566543 4555433 45555555555554
No 75
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=20.36 E-value=43 Score=22.75 Aligned_cols=14 Identities=50% Similarity=0.819 Sum_probs=12.2
Q ss_pred CCCccccccccCCC
Q 044881 227 SGDSKKIGTAVGGG 240 (241)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (241)
.+|+.|+=++||||
T Consensus 53 ~gD~vei~~~vgGG 66 (66)
T PRK05659 53 EGDVVEIVHALGGG 66 (66)
T ss_pred CCCEEEEEEEecCC
Confidence 46999999999997
Done!