Query 044881
Match_columns 241
No_of_seqs 144 out of 1337
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044881.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044881hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av3_A K(+)-stimulated pyropho 37.0 1.4E+02 0.0049 29.3 9.1 123 113-238 85-240 (735)
2 2kl0_A Putative thiamin biosyn 27.8 20 0.0007 24.4 1.1 16 226-241 51-66 (73)
3 4djk_A Probable glutamate/gamm 27.0 1.3E+02 0.0044 26.9 6.7 20 118-137 369-388 (511)
4 2k5p_A THis protein, thiamine- 26.3 23 0.00077 24.5 1.1 15 227-241 56-70 (78)
5 3l1l_A Arginine/agmatine antip 24.2 1.2E+02 0.0042 26.4 5.9 26 119-144 353-378 (445)
6 3tlw_A GLR4197 protein, GLIC; 23.3 3.4E+02 0.012 22.9 9.9 23 116-138 256-278 (321)
7 2l32_A Small archaeal modifier 13.7 1.6E+02 0.0056 19.7 3.3 13 228-240 54-66 (74)
8 3dh4_A Sodium/glucose cotransp 13.0 5.4E+02 0.018 23.5 7.7 51 141-194 417-467 (530)
9 1u6f_A Tcubp1, RNA-binding pro 12.6 1.6E+02 0.0055 21.3 3.2 34 194-227 87-121 (139)
10 2cu3_A Unknown function protei 10.3 80 0.0027 20.4 0.7 14 227-240 51-64 (64)
No 1
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=37.05 E-value=1.4e+02 Score=29.33 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=61.7
Q ss_pred chhhhhhhHHHHHHH--HHHHhhhhhhhhhhhccCCcccchhHHH------------HH--HHH-hhHHhhhhcccCCC-
Q 044881 113 KQRSMAVGIICILFN--IMMYASPLSVMKLVITTKSVEYMPFFLS------------LM--SLA-NGIAWTTYAFLPFD- 174 (241)
Q Consensus 113 ~~~~~~lG~~a~~~s--i~~~~sPL~~i~~Viktkst~~i~~~~~------------~~--~~~-n~~lW~~YG~l~~d- 174 (241)
..+..++|.+++..+ +.|..+--...|...--|++++++-.+- +. .++ -+.+..+|+....+
T Consensus 85 ~ai~Fl~Ga~~S~~aGyiGM~vAt~ANvRTA~AA~~s~~l~~aL~vAFrgGaVmGl~vvgl~Llgl~~~~~~~~~~~~~~ 164 (735)
T 4av3_A 85 TGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQV 164 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345566776666554 4577777777887776665555432111 11 111 12233334332211
Q ss_pred ------------eeEEec-hhHHHHHHHHHhhheeEEeCCcchhhhhhccCCCcccceeE--eccCCCCCccccccccC
Q 044881 175 ------------QFIAIP-NGLGTLLGVAQVILYACYYKSTKRQMAARQGKGQVDLSAVV--VSESDSGDSKKIGTAVG 238 (241)
Q Consensus 175 ------------~~i~~~-N~~G~~l~~~ql~l~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 238 (241)
-+.-.+ ...|+.++..-+.+|.+-...-=++++|..+| =.+||| +.||||-..--|+|-||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKaADVGAD---LVGKVEagIPEDDPRNPAvIADNVG 240 (735)
T 4av3_A 165 DNLNIYTNWLGINFVPFAMTVSGYALGCSIIAMFDRVGGGVYTKAADMAAD---LVGKTELNLPEDDPRNPATIADNVG 240 (735)
T ss_dssp HHCSCEECTTSCEECHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT---TSCC-----------CCTTHHHHHH
T ss_pred cccccccccccccchhhhHHHhhhchhHHHHHHHHHHcCcceeccccccch---hhhhhhcCCCCCCCCCCchhhhhcc
Confidence 111223 35688888888888876443333556666444 123444 45799988888888776
No 2
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=27.82 E-value=20 Score=24.40 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.6
Q ss_pred CCCCccccccccCCCC
Q 044881 226 DSGDSKKIGTAVGGGG 241 (241)
Q Consensus 226 ~~~~~~~~~~~~~~~~ 241 (241)
..||+.|+=++||||.
T Consensus 51 ~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 51 TAGDEIEILTPRQGGL 66 (73)
T ss_dssp CTTCEEEEECCCCCCC
T ss_pred CCCCEEEEEccccCCc
Confidence 3579999999999984
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=26.98 E-value=1.3e+02 Score=26.91 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHhhhhhh
Q 044881 118 AVGIICILFNIMMYASPLSV 137 (241)
Q Consensus 118 ~lG~~a~~~si~~~~sPL~~ 137 (241)
.+--++++.....|+.+...
T Consensus 369 ~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 369 IALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555443
No 4
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=26.29 E-value=23 Score=24.52 Aligned_cols=15 Identities=33% Similarity=0.559 Sum_probs=13.3
Q ss_pred CCCccccccccCCCC
Q 044881 227 SGDSKKIGTAVGGGG 241 (241)
Q Consensus 227 ~~~~~~~~~~~~~~~ 241 (241)
.||+.|+=++||||.
T Consensus 56 dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 56 DGDAVEFLYFMGGGK 70 (78)
T ss_dssp SSBCEEECCCCCCSC
T ss_pred CCCEEEEEeeecCCC
Confidence 579999999999984
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.23 E-value=1.2e+02 Score=26.43 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHhhhhhhhhhhhcc
Q 044881 119 VGIICILFNIMMYASPLSVMKLVITT 144 (241)
Q Consensus 119 lG~~a~~~si~~~~sPL~~i~~Vikt 144 (241)
+..++++.....|..+.....+..|+
T Consensus 353 l~~~~~~~~~~~y~~~~~~~~~~r~~ 378 (445)
T 3l1l_A 353 VSSVSVIFTLVPYLYTCAALLLLGHG 378 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444555555554444443333
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=23.31 E-value=3.4e+02 Score=22.95 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhh
Q 044881 116 SMAVGIICILFNIMMYASPLSVM 138 (241)
Q Consensus 116 ~~~lG~~a~~~si~~~~sPL~~i 138 (241)
...+|..-.++-+++++|=+..+
T Consensus 256 vp~i~~~~~~~~~~v~~sll~~v 278 (321)
T 3tlw_A 256 MTYTGAIIFMIYLFYFVAVIEVT 278 (321)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655555556666655543
No 7
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=13.72 E-value=1.6e+02 Score=19.71 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.9
Q ss_pred CCccccccccCCC
Q 044881 228 GDSKKIGTAVGGG 240 (241)
Q Consensus 228 ~~~~~~~~~~~~~ 240 (241)
||+.++=+++|||
T Consensus 54 GD~VeIv~~V~G~ 66 (74)
T 2l32_A 54 VDRVKVLRLIKGG 66 (74)
T ss_dssp CCCEEECSSCSCC
T ss_pred CCEEEEEEeeccc
Confidence 8999999999998
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=13.00 E-value=5.4e+02 Score=23.52 Aligned_cols=51 Identities=6% Similarity=-0.052 Sum_probs=23.4
Q ss_pred hhccCCcccchhHHHHHHHHhhHHhhhhcccCCCeeEEechhHHHHHHHHHhhh
Q 044881 141 VITTKSVEYMPFFLSLMSLANGIAWTTYAFLPFDQFIAIPNGLGTLLGVAQVIL 194 (241)
Q Consensus 141 Viktkst~~i~~~~~~~~~~n~~lW~~YG~l~~d~~i~~~N~~G~~l~~~ql~l 194 (241)
..-+|.++.=-+.-.+.+++..+.|.... .+....-++.++++++.+-..+
T Consensus 417 l~wkr~~~~gA~~g~i~G~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~ 467 (530)
T 3dh4_A 417 LFWKKTTSKGAIIGVVASIPFALFLKFMP---LSMPFMDQMLYTLLFTMVVIAF 467 (530)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHHHTSS---SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHc---CCccHHHHHHHHHHHHHHHHHH
Confidence 34444333323333344444444443322 2333344567777766654433
No 9
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=12.62 E-value=1.6e+02 Score=21.28 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=17.6
Q ss_pred heeEEeCCcchhhhhhccCC-CcccceeEeccCCC
Q 044881 194 LYACYYKSTKRQMAARQGKG-QVDLSAVVVSESDS 227 (241)
Q Consensus 194 l~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 227 (241)
-|+.|........+....++ ..+.-.+.|+.+.+
T Consensus 87 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 87 GFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp EEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 35566655444555554454 44445556665444
No 10
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=10.28 E-value=80 Score=20.36 Aligned_cols=14 Identities=29% Similarity=0.556 Sum_probs=10.7
Q ss_pred CCCccccccccCCC
Q 044881 227 SGDSKKIGTAVGGG 240 (241)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (241)
.+|+.++=.+||||
T Consensus 51 dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 51 DGDVVEVVALMQGG 64 (64)
T ss_dssp TTCEEEEEECCCC-
T ss_pred CCCEEEEEeecccC
Confidence 46888888899987
Done!