Query 044881
Match_columns 241
No_of_seqs 144 out of 1337
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 13:18:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044881.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044881hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zud21 d.15.3.2 (2:2-66) Thia 22.2 13 0.00093 23.2 0.8 27 214-240 27-65 (65)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 10.1 1.1E+02 0.0083 15.5 2.5 19 61-79 8-26 (30)
3 d1vf5c3 f.23.23.1 (C:250-286) 9.7 1.5E+02 0.011 16.2 3.3 17 135-151 18-34 (37)
4 d1p1ta_ d.58.7.1 (A:) Cleavage 9.1 51 0.0037 21.4 1.1 47 194-240 53-100 (104)
5 d2cu3a1 d.15.3.2 (A:1-63) Unch 5.8 80 0.0058 19.0 0.7 26 214-239 26-63 (63)
6 d1tygb_ d.15.3.2 (B:) Thiamin 5.5 2.1E+02 0.015 16.9 2.7 26 214-239 28-65 (65)
7 d1x5ta1 d.58.7.1 (A:8-90) Spli 4.8 1.6E+02 0.012 17.7 1.8 36 194-229 44-80 (83)
8 d1jfia_ a.22.1.3 (A:) Negative 4.4 3.4E+02 0.025 15.8 3.2 12 134-145 4-15 (66)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 4.3 1.5E+02 0.011 16.1 1.0 9 61-69 4-12 (36)
10 d2u2fa_ d.58.7.1 (A:) Splicing 4.1 3.3E+02 0.024 16.3 3.1 36 195-230 47-83 (85)
No 1
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}
Probab=22.21 E-value=13 Score=23.20 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=19.8
Q ss_pred CcccceeEec------------cCCCCCccccccccCCC
Q 044881 214 QVDLSAVVVS------------ESDSGDSKKIGTAVGGG 240 (241)
Q Consensus 214 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 240 (241)
+++..+|++. .=..+|+.|+=++||||
T Consensus 27 ~~~~vaV~vN~~ivpk~~~~~~~L~~gD~ieIv~~v~GG 65 (65)
T d1zud21 27 RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQVIAGG 65 (65)
T ss_dssp CCTTEEEEETTEECCGGGTTTCBCCTTCEEEEEECCCCC
T ss_pred CCCcEEEEECCEEcCHHHHhhccCCCCCEEEEEEEecCC
Confidence 5566677766 12357999999999998
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.15 E-value=1.1e+02 Score=15.53 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHhhhcc
Q 044881 61 NGSGTAIEVVYIILFVLHS 79 (241)
Q Consensus 61 N~~G~~l~~~y~~v~~~y~ 79 (241)
-++.+++++++.++|++-.
T Consensus 8 ~ifac~i~lfffaiffrep 26 (30)
T d2axtt1 8 FIFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 3455666666666666543
No 3
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=9.66 E-value=1.5e+02 Score=16.17 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=10.2
Q ss_pred hhhhhhhhccCCcccch
Q 044881 135 LSVMKLVITTKSVEYMP 151 (241)
Q Consensus 135 L~~i~~Viktkst~~i~ 151 (241)
+.++--|+|+|..|.+.
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566667777666543
No 4
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.13 E-value=51 Score=21.39 Aligned_cols=47 Identities=21% Similarity=0.230 Sum_probs=27.6
Q ss_pred heeEEeCCcchhhhhhccCC-CcccceeEeccCCCCCccccccccCCC
Q 044881 194 LYACYYKSTKRQMAARQGKG-QVDLSAVVVSESDSGDSKKIGTAVGGG 240 (241)
Q Consensus 194 l~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (241)
-|+-|........+..+.++ ..+.-.+.|+.+.+...++.....|.|
T Consensus 53 afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~g 100 (104)
T d1p1ta_ 53 GFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTG 100 (104)
T ss_dssp EEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHHHHHHHTTC
T ss_pred eEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCccccccCCCC
Confidence 46667766555666665554 444455667776665555555555554
No 5
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=5.81 E-value=80 Score=19.04 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=18.0
Q ss_pred CcccceeEec------------cCCCCCccccccccCC
Q 044881 214 QVDLSAVVVS------------ESDSGDSKKIGTAVGG 239 (241)
Q Consensus 214 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 239 (241)
++...+|++. +=..+|+.|+=+++||
T Consensus 26 ~~~~vAV~vN~~ivpr~~~~~~~l~~gD~iEIv~~vgG 63 (63)
T d2cu3a1 26 ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQG 63 (63)
T ss_dssp CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEECCCC
T ss_pred CCCcEEEEECCEEcCHHHcCcccCCCCCEEEEEEecCC
Confidence 5556677766 2235688888888887
No 6
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Probab=5.53 E-value=2.1e+02 Score=16.93 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=19.4
Q ss_pred CcccceeEec------------cCCCCCccccccccCC
Q 044881 214 QVDLSAVVVS------------ESDSGDSKKIGTAVGG 239 (241)
Q Consensus 214 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 239 (241)
++++.+|++. +=..+|+.|+=+++||
T Consensus 28 ~~~~vAVevN~~iv~k~~~~~~~L~~gD~IEIv~~vgG 65 (65)
T d1tygb_ 28 ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHFVGG 65 (65)
T ss_dssp TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEECCC
T ss_pred CCCcEEEEECCEEcCHHHcCcccCCCCCEEEEEEeecC
Confidence 6777888876 2235699999999987
No 7
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.81 E-value=1.6e+02 Score=17.70 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=19.9
Q ss_pred heeEEeCCcchhhhhhccCC-CcccceeEeccCCCCC
Q 044881 194 LYACYYKSTKRQMAARQGKG-QVDLSAVVVSESDSGD 229 (241)
Q Consensus 194 l~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 229 (241)
-|+-|........+..+.++ ..+.-.+.|+++.+.|
T Consensus 44 afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k~ 80 (83)
T d1x5ta1 44 AFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 80 (83)
T ss_dssp EEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred EEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCCC
Confidence 35566655555555555554 4444566677665534
No 8
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.39 E-value=3.4e+02 Score=15.80 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=9.4
Q ss_pred hhhhhhhhhccC
Q 044881 134 PLSVMKLVITTK 145 (241)
Q Consensus 134 PL~~i~~Viktk 145 (241)
|+..+++++|+-
T Consensus 4 P~srVkkimk~~ 15 (66)
T d1jfia_ 4 PPARIKKIMQTD 15 (66)
T ss_dssp CHHHHHHHHTTS
T ss_pred ChHHHHHHHhcC
Confidence 788888888843
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.26 E-value=1.5e+02 Score=16.08 Aligned_cols=9 Identities=22% Similarity=0.165 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 044881 61 NGSGTAIEV 69 (241)
Q Consensus 61 N~~G~~l~~ 69 (241)
|..|++...
T Consensus 4 N~Lg~iAt~ 12 (36)
T d2axtm1 4 NQLGLIATA 12 (36)
T ss_dssp CTTHHHHHH
T ss_pred hHHHHHHHH
Confidence 444444433
No 10
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.15 E-value=3.3e+02 Score=16.29 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=0.0
Q ss_pred eeEEeCCcchhhhhhccCC-CcccceeEeccCCCCCc
Q 044881 195 YACYYKSTKRQMAARQGKG-QVDLSAVVVSESDSGDS 230 (241)
Q Consensus 195 ~~~y~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 230 (241)
|+-|........+..+.++ ..+.-++.|+.++++.+
T Consensus 47 FV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~~~~ 83 (85)
T d2u2fa_ 47 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 83 (85)
T ss_dssp EEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCCCCC
T ss_pred EEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Done!