BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044882
(815 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 19/163 (11%)
Query: 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLT--YIAAVQLPLSLKNLLIHKC 572
L+++ IR C L LPE + T++S E + SL + LP S+ NL
Sbjct: 152 LRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL----- 205
Query: 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE--GGLPCAKLTRLEISS 630
N+++L + S+ +H+L +L+E+ +R C L ++P GG A L RL +
Sbjct: 206 QNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 631 CKRLEALPKGLHNLTSLQELTIGRGV----ELPSLKEDGLPTN 669
C L LP +H LT L++L + RG LPSL LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDL-RGCVNLSRLPSLIAQ-LPAN 303
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLE 207
+ F+L L+ ++ + ELPD+ L L L+ +R LP S+ L L L +
Sbjct: 99 QAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158
Query: 208 DCDRLKKLCADMGNL-AKLHHLKNSNTKSL-------EEMPVGIGRLTSLQTL 252
C L +L + + A H N +SL +P I L +L++L
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 157 AFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLC 216
A LR + + PD L +L++ + + LP++ + L +L L + L+ L
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALP 143
Query: 217 ADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSL---QTLCNFVVGKGSGSGLRELKLLTH 273
A + +L +L L L E+P + + Q L N + +G+R L
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP---- 199
Query: 274 LHGTLNISKLENVKDV 289
+I+ L+N+K +
Sbjct: 200 ----ASIANLQNLKSL 211
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 44/233 (18%)
Query: 337 NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSR 396
+L+ I G + P F+ L TL + S+ L L+ L++
Sbjct: 105 HLQHXTIDAAGLXELPD--TXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPE 162
Query: 397 VKRLGSEFYGNDSP---IPFLCLETLRFEDMQEWEDWIPLRS-GQGVEGFPKLRELHILR 452
+ L D+ + L++LR E W +RS + L+ L I R
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLE-------WTGIRSLPASIANLQNLKSLKI-R 214
Query: 453 CSKLKGTFP--EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGS 510
S L P HLP LE L + GC ++ + P I GG
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGC----TALRNYPP----IFGG--------------- 251
Query: 511 QNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAV--QLP 561
+ LK++ +++C L +LP + LE + +R C +L+ + ++ QLP
Sbjct: 252 -RAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 143 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLH 202
++I +FK L L G + ELP I +L LR L+LS + +LP + + L
Sbjct: 237 FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Query: 203 SLLLEDCDRLKKLCADMGNLAKLHHL 228
D + + L + GNL L L
Sbjct: 297 YFYFFD-NMVTTLPWEFGNLCNLQFL 321
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 151 KLQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLED 208
+L L L G + LP+ + L L YLNLS ++++LP V +KL L L L +
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-N 108
Query: 209 CDRLKKLCADMGNLAKLHHLKNSN--TKSLEEMPVGI-GRLTSLQ 250
++L+ L G KL LK+ L+ +P G+ RLTSLQ
Sbjct: 109 TNQLQSL--PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|1CFR|A Chain A, Crystal Structure Of Citrobacter Freundii Restriction
Endonuclease Cfr10i At 2.15 Angstroms Resolution
Length = 285
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 67 DLINDLAQWAAGEIYFRMEYTSEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLR 126
+LI ++ +I R E + K SFS LS I E + K F D +++H++
Sbjct: 127 NLITSNPDFSIIDIRGRREELKSMLKDISFSN--ISLSTISEIDNLYKNFIDYAELEHIK 184
Query: 127 TFLPV--TLSNSSRGHLAY--SILPKLFKLQRLRAFSLR--GYHIFELPDSIGDLRYLRY 180
+FL V T R LA+ S++ L+ + R +++ G + SIG+ +
Sbjct: 185 SFLSVKTTFRPDRRLQLAHEGSLMKALYTHLQTRTWTINPTGIRYYAAATSIGNADVIGL 244
Query: 181 LNL---SGTEIRTLPES-VNKLYNLHSLLLED 208
+ S T++++LP+S V++++ ++S+L D
Sbjct: 245 KTVATHSITDVKSLPQSAVDEIFKINSVLDVD 276
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 122 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYL 181
++HL + LS + + S+L +L +LQ ++ G P + L YLR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 182 NLSGTEIRTLPESV-NKLYNLHSLLLE 207
N+SG ++ TL ESV + + NL +L+L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 142 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNL 201
+S LPKL +++ +A +L ++ P++ +L L+YL +S T I+ LP+ V+K+++L
Sbjct: 74 VFSNLPKLHEIRIEKANNL----LYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSL 128
Query: 202 HSLLLEDCDRLK 213
+LL+ D +
Sbjct: 129 QKVLLDIQDNIN 140
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 142 AYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNL 201
+S LPKL +++ +A +L ++ P++ +L L+YL +S T I+ LP+ V+K+++L
Sbjct: 74 VFSNLPKLHEIRIEKANNL----LYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSL 128
Query: 202 HSLLLEDCDRLK 213
+LL+ D +
Sbjct: 129 QKVLLDIQDNIN 140
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 145 ILPKLFKLQRLRAFSLR-GYHIFELPDSIGDLRYLR----YLNLSGTEIRTLPESVNKLY 199
I P L L + L Y +P S+G L LR +LN+ EI P+ + +
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVK 466
Query: 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
L +L+L+ D ++ + + N L+ + SN + E+P IGRL +L L
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 145 ILPKLFKLQRLRAFSLR-GYHIFELPDSIGDLRYLR----YLNLSGTEIRTLPESVNKLY 199
I P L L + L Y +P S+G L LR +LN+ EI P+ + +
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI---PQELMYVK 463
Query: 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252
L +L+L+ D ++ + + N L+ + SN + E+P IGRL +L L
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 614 PEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSL 673
P P KL RL +S +L+ LP+ + +LQEL + E+ +++ Q +
Sbjct: 93 PGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMI 148
Query: 674 TIE-GNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732
+E G + S IE G F +++L+ I D ++ P+ LP SL
Sbjct: 149 VVELGTNPLKSSGIENGA----FQGMKKLSYIRIADTNITTIPQG----------LPPSL 194
Query: 733 TSLWISGFPNLERLSSSIVDLQNLASLYL 761
T L + G + ++S+ L NLA L L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGL 223
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 614 PEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSL 673
P P KL RL +S +L+ LP+ + +LQEL + E+ +++ Q +
Sbjct: 93 PGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMI 148
Query: 674 TIE-GNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732
+E G + S IE G F +++L+ I D ++ P+ LP SL
Sbjct: 149 VVELGTNPLKSSGIENGA----FQGMKKLSYIRIADTNITTIPQG----------LPPSL 194
Query: 733 TSLWISGFPNLERLSSSIVDLQNLASLYL 761
T L + G + ++S+ L NLA L L
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGL 223
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCD 210
L +R +L G + ++ ++ +L L YL L+G ++++LP V +KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 211 RLKKLCADMGNLAKLHHLK--NSNTKSLEEMPVGI-GRLTSLQTL 252
+L+ L G KL +L N L+ +P G+ +LT+L L
Sbjct: 120 QLQSLPD--GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 763 DCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCRKDG 798
DCP +PE + + Q WG PL E KC KDG
Sbjct: 191 DCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDG 224
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCD 210
L +R +L G + ++ ++ +L L YL L+G ++++LP V +KL NL L+L + +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-N 119
Query: 211 RLKKL----CADMGNLAKLHHLKNSNTKSLEEMPVGI-GRLTSLQTL 252
+L+ L + NL L+ N L+ +P G+ +LT+L L
Sbjct: 120 QLQSLPDGVFDKLTNLTYLYLYHN----QLQSLPKGVFDKLTNLTRL 162
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 763 DCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCRKDG 798
DCP +PE + + Q WG PL E KC KDG
Sbjct: 190 DCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDG 223
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 24/140 (17%)
Query: 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRC 607
Q +L ++ + LSL+NL+ + T GI +GL +L L +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-----FNGLSSLEVL-----KMA 453
Query: 608 GNLVSFPEGGLP-----CAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLK 662
GN SF E LP LT L++S C+ + P ++L+SLQ L + +L S+
Sbjct: 454 GN--SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVP 510
Query: 663 EDGLPTNLQSLTIEGNMEIW 682
DG+ L SL +IW
Sbjct: 511 -DGIFDRLTSL-----QKIW 524
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRC 607
Q +L ++ + LSL+NL+ + T GI +GL +L L +
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-----FNGLSSLEVL-----KMA 477
Query: 608 GNLVSFPEGGLP-----CAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRG 655
GN SF E LP LT L++S C+ + P ++L+SLQ L +
Sbjct: 478 GN--SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 763 DCPKLKYFPEKGLPSSLLQLDIWGCPLIEEKCRKDG 798
DCP +PE + + Q WG PL E KC KDG
Sbjct: 375 DCPGNWTWPENSQQTPMCQ--AWGNPLPELKCLKDG 408
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRC 607
Q +L ++ + LSL+NL+ + T GI +GL +L L +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-----FNGLSSLEVL-----KMA 453
Query: 608 GNLVSFPEGGLP-----CAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRG 655
GN SF E LP LT L++S C+ + P ++L+SLQ L +
Sbjct: 454 GN--SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
>pdb|3KKL|A Chain A, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
pdb|3KKL|B Chain B, Crystal Structure Of Functionally Unknown Hsp33 From
Saccharomyces Cerevisiae
Length = 244
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 397 VKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLREL-----HIL 451
++ + S+ Y N I +C L F+ + + + PL G+ + GFP E+ IL
Sbjct: 120 LQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDIL 179
Query: 452 RCSKL 456
R KL
Sbjct: 180 RSRKL 184
>pdb|3KE3|A Chain A, Crystal Structure Of Putative Serine-Pyruvate
Aminotransferase (Yp_263484.1) From Psychrobacter
Arcticum 273-4 At 2.20 A Resolution
Length = 379
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 610 LVSFPEGG---LPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVE 657
L+S P+ G PCA L L ++ K++E+ +L Q LTI R E
Sbjct: 193 LISAPQXGWSSTPCAGLVXLSAAAIKKVESTESNCFSLDLKQWLTIXRAYE 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,260,422
Number of Sequences: 62578
Number of extensions: 1090718
Number of successful extensions: 2524
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2486
Number of HSP's gapped (non-prelim): 58
length of query: 815
length of database: 14,973,337
effective HSP length: 107
effective length of query: 708
effective length of database: 8,277,491
effective search space: 5860463628
effective search space used: 5860463628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)