Query 044882
Match_columns 815
No_of_seqs 553 out of 3903
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 07:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044882.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044882hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8.7E-41 1.9E-45 400.8 24.3 512 118-788 88-605 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-40 7E-45 395.8 25.1 507 123-790 69-584 (968)
3 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-38 3.6E-43 357.3 13.8 248 1-257 417-675 (889)
4 PLN03210 Resistant to P. syrin 100.0 2.1E-32 4.6E-37 326.8 28.6 233 1-252 443-686 (1153)
5 KOG4194 Membrane glycoprotein 100.0 3.1E-29 6.8E-34 252.0 4.9 187 563-763 259-448 (873)
6 KOG0472 Leucine-rich repeat pr 99.9 1.1E-31 2.3E-36 257.8 -14.9 470 145-772 60-544 (565)
7 KOG0618 Serine/threonine phosp 99.9 5.8E-28 1.3E-32 256.3 -5.8 442 150-790 42-489 (1081)
8 PLN03210 Resistant to P. syrin 99.9 2E-24 4.4E-29 258.5 23.5 133 596-746 777-909 (1153)
9 KOG4194 Membrane glycoprotein 99.9 1.7E-26 3.6E-31 232.5 3.1 358 155-654 80-448 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 3.9E-29 8.5E-34 240.3 -15.2 246 117-395 62-308 (565)
11 KOG0444 Cytoskeletal regulator 99.9 8.8E-28 1.9E-32 243.2 -7.0 161 143-395 22-184 (1255)
12 KOG0618 Serine/threonine phosp 99.9 1.6E-27 3.5E-32 253.0 -7.1 462 144-807 12-480 (1081)
13 KOG0444 Cytoskeletal regulator 99.9 3.3E-26 7.2E-31 231.9 -5.6 159 537-714 195-355 (1255)
14 PRK15387 E3 ubiquitin-protein 99.7 3.6E-16 7.8E-21 173.3 13.1 78 153-240 201-278 (788)
15 KOG4237 Extracellular matrix p 99.6 1.1E-17 2.3E-22 161.8 -2.0 107 146-253 84-194 (498)
16 KOG4237 Extracellular matrix p 99.6 4E-17 8.6E-22 158.0 -1.0 215 536-786 271-497 (498)
17 PRK15387 E3 ubiquitin-protein 99.6 3E-14 6.5E-19 158.2 15.3 35 729-764 421-455 (788)
18 KOG0617 Ras suppressor protein 99.5 2.5E-16 5.4E-21 134.4 -2.5 106 146-252 26-132 (264)
19 KOG4658 Apoptotic ATPase [Sign 99.5 2.2E-14 4.7E-19 163.1 8.8 148 118-274 518-670 (889)
20 PRK15370 E3 ubiquitin-protein 99.5 9.7E-14 2.1E-18 155.4 13.1 83 153-243 178-260 (754)
21 KOG0617 Ras suppressor protein 99.5 4.5E-16 9.8E-21 132.8 -5.9 129 116-253 26-156 (264)
22 PRK15370 E3 ubiquitin-protein 99.5 2.1E-13 4.6E-18 152.6 10.8 231 506-789 192-427 (754)
23 cd00116 LRR_RI Leucine-rich re 99.1 7.9E-12 1.7E-16 130.7 -1.9 188 572-764 80-288 (319)
24 cd00116 LRR_RI Leucine-rich re 99.0 8.1E-12 1.8E-16 130.6 -4.2 195 590-792 74-293 (319)
25 PF14580 LRR_9: Leucine-rich r 99.0 3.5E-10 7.5E-15 102.7 5.9 132 117-259 13-152 (175)
26 KOG4341 F-box protein containi 99.0 6.9E-12 1.5E-16 123.3 -6.3 281 381-702 161-458 (483)
27 KOG4341 F-box protein containi 98.9 4.1E-11 8.8E-16 118.0 -4.5 89 465-554 138-231 (483)
28 KOG0532 Leucine-rich repeat (L 98.8 1.7E-10 3.8E-15 117.9 -3.1 106 144-252 89-194 (722)
29 COG4886 Leucine-rich repeat (L 98.8 5.6E-09 1.2E-13 112.3 5.7 104 148-253 111-215 (394)
30 PF14580 LRR_9: Leucine-rich r 98.7 8.8E-09 1.9E-13 93.6 4.6 102 148-253 14-119 (175)
31 KOG3207 Beta-tubulin folding c 98.7 1.6E-09 3.4E-14 107.6 -1.6 210 536-762 118-334 (505)
32 KOG0532 Leucine-rich repeat (L 98.7 8.9E-10 1.9E-14 112.8 -3.6 196 150-394 72-270 (722)
33 PRK15386 type III secretion pr 98.7 1.3E-07 2.8E-12 96.6 10.9 163 595-792 50-215 (426)
34 KOG1259 Nischarin, modulator o 98.6 8.8E-09 1.9E-13 97.0 0.8 81 152-234 283-363 (490)
35 PF13855 LRR_8: Leucine rich r 98.6 4E-08 8.6E-13 73.0 3.9 57 153-209 1-59 (61)
36 COG4886 Leucine-rich repeat (L 98.6 4.7E-08 1E-12 105.1 4.7 125 119-252 112-237 (394)
37 KOG3207 Beta-tubulin folding c 98.6 6.1E-09 1.3E-13 103.5 -2.0 201 441-680 119-338 (505)
38 PLN03150 hypothetical protein; 98.4 3.8E-07 8.2E-12 102.6 8.2 93 154-246 419-513 (623)
39 PLN03150 hypothetical protein; 98.4 3E-07 6.6E-12 103.4 7.0 79 177-255 419-498 (623)
40 PF13855 LRR_8: Leucine rich r 98.4 7.4E-07 1.6E-11 66.1 5.3 59 597-656 1-60 (61)
41 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.5E-12 89.6 0.8 123 121-254 282-406 (490)
42 PRK15386 type III secretion pr 98.3 2E-06 4.2E-11 88.1 9.6 137 619-788 50-188 (426)
43 KOG2120 SCF ubiquitin ligase, 98.3 5.5E-09 1.2E-13 98.4 -8.3 179 574-787 186-373 (419)
44 KOG1909 Ran GTPase-activating 98.2 5.1E-08 1.1E-12 94.5 -4.0 242 513-764 30-308 (382)
45 PF12799 LRR_4: Leucine Rich r 98.2 1E-06 2.2E-11 59.4 3.4 33 177-209 2-34 (44)
46 KOG2120 SCF ubiquitin ligase, 98.2 3.5E-08 7.6E-13 93.1 -5.4 91 297-396 256-350 (419)
47 KOG0531 Protein phosphatase 1, 98.2 4.9E-07 1.1E-11 97.2 1.7 105 146-254 88-193 (414)
48 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.7E-11 58.3 3.6 40 153-192 1-40 (44)
49 KOG4579 Leucine-rich repeat (L 98.2 3.7E-07 8.1E-12 76.0 0.1 104 149-254 49-155 (177)
50 KOG1909 Ran GTPase-activating 98.1 2.3E-07 5E-12 90.0 -2.6 240 536-789 27-310 (382)
51 KOG0531 Protein phosphatase 1, 98.1 5.5E-07 1.2E-11 96.8 -1.4 99 151-253 70-168 (414)
52 KOG4579 Leucine-rich repeat (L 98.0 7.8E-07 1.7E-11 74.1 -1.8 99 153-253 27-129 (177)
53 KOG1859 Leucine-rich repeat pr 97.8 3.1E-07 6.7E-12 97.3 -7.7 126 596-741 163-290 (1096)
54 COG5238 RNA1 Ran GTPase-activa 97.7 1.8E-06 3.9E-11 80.7 -3.7 91 149-240 26-136 (388)
55 KOG1947 Leucine rich repeat pr 97.7 2.5E-06 5.5E-11 95.0 -4.2 244 514-795 189-445 (482)
56 KOG1859 Leucine-rich repeat pr 97.5 7.3E-06 1.6E-10 87.3 -3.6 83 148-234 182-265 (1096)
57 KOG3665 ZYG-1-like serine/thre 97.4 9E-05 1.9E-09 83.3 3.9 108 121-234 146-261 (699)
58 KOG2982 Uncharacterized conser 97.4 0.00013 2.8E-09 69.6 3.8 189 571-772 69-267 (418)
59 KOG2982 Uncharacterized conser 97.4 9.6E-05 2.1E-09 70.4 2.8 85 150-234 68-157 (418)
60 KOG3665 ZYG-1-like serine/thre 97.4 6.4E-05 1.4E-09 84.4 1.9 107 121-234 120-231 (699)
61 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.4E-08 59.9 5.0 98 155-255 44-148 (233)
62 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.4E-08 60.0 4.8 91 143-234 54-151 (233)
63 KOG1947 Leucine rich repeat pr 96.9 8.1E-05 1.8E-09 82.9 -3.5 164 620-792 242-416 (482)
64 KOG2123 Uncharacterized conser 96.9 9.8E-05 2.1E-09 69.7 -2.8 102 153-257 19-127 (388)
65 KOG2739 Leucine-rich acidic nu 96.7 0.00097 2.1E-08 63.1 2.3 103 151-257 41-153 (260)
66 COG5238 RNA1 Ran GTPase-activa 96.6 4.4E-05 9.5E-10 71.7 -6.8 89 616-705 87-194 (388)
67 PF00560 LRR_1: Leucine Rich R 96.3 0.0012 2.6E-08 36.8 0.5 6 181-186 5-10 (22)
68 KOG2123 Uncharacterized conser 96.3 0.00031 6.6E-09 66.5 -3.6 99 122-229 18-123 (388)
69 PF00560 LRR_1: Leucine Rich R 96.2 0.0025 5.5E-08 35.5 1.1 22 154-175 1-22 (22)
70 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8E-08 59.3 2.3 93 147-241 59-160 (260)
71 KOG0473 Leucine-rich repeat pr 95.5 0.00067 1.5E-08 62.5 -4.6 85 149-234 38-122 (326)
72 PF13504 LRR_7: Leucine rich r 94.7 0.019 4.1E-07 29.5 1.3 13 178-190 3-15 (17)
73 PF13504 LRR_7: Leucine rich r 94.3 0.027 5.9E-07 28.9 1.3 17 153-169 1-17 (17)
74 PF13306 LRR_5: Leucine rich r 94.2 0.092 2E-06 45.9 5.5 61 591-654 29-90 (129)
75 KOG3864 Uncharacterized conser 94.1 0.0089 1.9E-07 54.3 -1.3 89 669-769 102-191 (221)
76 PF13306 LRR_5: Leucine rich r 94.0 0.28 6E-06 42.8 8.1 13 593-605 8-20 (129)
77 KOG0473 Leucine-rich repeat pr 92.7 0.0054 1.2E-07 56.7 -5.0 87 165-253 30-117 (326)
78 smart00370 LRR Leucine-rich re 92.2 0.14 3E-06 29.8 2.2 20 175-194 1-20 (26)
79 smart00369 LRR_TYP Leucine-ric 92.2 0.14 3E-06 29.8 2.2 20 175-194 1-20 (26)
80 KOG3864 Uncharacterized conser 91.9 0.025 5.5E-07 51.5 -1.7 82 621-705 101-185 (221)
81 smart00370 LRR Leucine-rich re 87.9 0.36 7.8E-06 28.0 1.5 21 152-172 1-21 (26)
82 smart00369 LRR_TYP Leucine-ric 87.9 0.36 7.8E-06 28.0 1.5 21 152-172 1-21 (26)
83 smart00367 LRR_CC Leucine-rich 85.6 0.56 1.2E-05 27.3 1.5 15 778-792 3-17 (26)
84 smart00364 LRR_BAC Leucine-ric 77.9 1.5 3.2E-05 25.4 1.3 17 177-193 3-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 77.4 1.9 4.2E-05 25.0 1.7 16 176-191 2-17 (26)
86 PF13516 LRR_6: Leucine Rich r 72.7 1.3 2.8E-05 25.1 0.2 12 177-188 3-14 (24)
87 KOG4308 LRR-containing protein 61.8 0.084 1.8E-06 57.1 -11.3 14 620-633 171-184 (478)
88 smart00368 LRR_RI Leucine rich 57.6 8.6 0.00019 22.8 1.7 14 176-189 2-15 (28)
89 KOG4308 LRR-containing protein 48.0 0.31 6.8E-06 52.8 -9.7 185 515-705 89-299 (478)
90 PF12379 DUF3655: Protein of u 40.4 13 0.00029 26.0 0.7 11 1-11 1-11 (70)
91 PF14162 YozD: YozD-like prote 34.9 48 0.0011 22.7 2.6 23 35-57 9-31 (57)
92 KOG3763 mRNA export factor TAP 27.7 28 0.00062 37.7 1.1 80 572-651 217-307 (585)
93 PF05725 FNIP: FNIP Repeat; I 23.3 1.4E+02 0.003 19.9 3.5 30 646-676 13-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=8.7e-41 Score=400.75 Aligned_cols=512 Identities=17% Similarity=0.209 Sum_probs=242.0
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccc-cCCCcccEEEcCCCCcc-ccCccccCCccCCEEecCCCCCC-ccchh
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKL-FKLQRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTEIR-TLPES 194 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~ 194 (815)
.+..+++|+.|.+.++. +...+|..+ ..+++||+|+|++|++. .+|. +.+++|++|+|++|.+. .+|..
T Consensus 88 ~~~~l~~L~~L~Ls~n~------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~ 159 (968)
T PLN00113 88 AIFRLPYIQTINLSNNQ------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND 159 (968)
T ss_pred HHhCCCCCCEEECCCCc------cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH
Confidence 34456666666555432 333444444 35666666666666654 2332 34566666666666655 55666
Q ss_pred hhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCcccccccccc
Q 044882 195 VNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHL 274 (815)
Q Consensus 195 i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L 274 (815)
++++++|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|+......
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--------------- 224 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL--------------- 224 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc---------------
Confidence 66666666666666643445666666666666666666654445555566666666553211100
Q ss_pred ccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCC-CCCc
Q 044882 275 HGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGT-KFPT 353 (815)
Q Consensus 275 ~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~ 353 (815)
....+..+..+++|+.|++++| ... .+|.
T Consensus 225 ---------------~~~~p~~l~~l~~L~~L~L~~n-----------------------------------~l~~~~p~ 254 (968)
T PLN00113 225 ---------------SGEIPYEIGGLTSLNHLDLVYN-----------------------------------NLTGPIPS 254 (968)
T ss_pred ---------------CCcCChhHhcCCCCCEEECcCc-----------------------------------eeccccCh
Confidence 0001111333444445554444 332 2344
Q ss_pred cCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccc
Q 044882 354 WFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIP 432 (815)
Q Consensus 354 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 432 (815)
.+. .+++|++|++++|.+.+.+| .+..+++|++|++++|.....++. .+. .+++|+.|.+.+....... .
T Consensus 255 ~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~-----~l~~L~~L~l~~n~~~~~~-~ 325 (968)
T PLN00113 255 SLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVI-----QLQNLEILHLFSNNFTGKI-P 325 (968)
T ss_pred hHh--CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHc-----CCCCCcEEECCCCccCCcC-C
Confidence 433 24555555555555544444 445555555555555422111110 000 0222222222211100000 0
Q ss_pred cCCCCCcccCCCcceeeeccCcccccCCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCc
Q 044882 433 LRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQN 512 (815)
Q Consensus 433 ~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 512 (815)
..+..+++|+.|++++| .+.+.+|..+ ..+
T Consensus 326 ----~~~~~l~~L~~L~L~~n-~l~~~~p~~l------------------~~~--------------------------- 355 (968)
T PLN00113 326 ----VALTSLPRLQVLQLWSN-KFSGEIPKNL------------------GKH--------------------------- 355 (968)
T ss_pred ----hhHhcCCCCCEEECcCC-CCcCcCChHH------------------hCC---------------------------
Confidence 11114555555555553 3443444211 111
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSG 592 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~ 592 (815)
++|+.|++++|.....+|..+ ..+++|+.|++++|.....++. .+..|++|+.+++++|.+.+..|..
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~--~~~~~L~~L~l~~n~l~~~~p~----------~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGL--CSSGNLFKLILFSNSLEGEIPK----------SLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CCCcEEECCCCeeEeeCChhH--hCcCCCCEEECcCCEecccCCH----------HHhCCCCCCEEECcCCEeeeECChh
Confidence 223333333333333333333 2344444444444432211110 1223444555555555555555555
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCc
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQ 671 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~ 671 (815)
+..+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.....+|.. ..+++|+
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccC
Confidence 5555555555555555444444444455555555555555555544433 2355555555555433333322 3445555
Q ss_pred eEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCC
Q 044882 672 SLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIV 751 (815)
Q Consensus 672 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 751 (815)
+|++++|......+ ..+..+++|+.|++++ +.....+|. .+..+++|+.|++++|+....+|..+.
T Consensus 503 ~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~-N~l~~~~p~---------~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 503 QLKLSENKLSGEIP----DELSSCKKLVSLDLSH-NQLSGQIPA---------SFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred EEECcCCcceeeCC----hHHcCccCCCEEECCC-CcccccCCh---------hHhCcccCCEEECCCCcccccCChhHh
Confidence 55555554332111 2345566666666665 222222322 234556777777777655556676667
Q ss_pred CCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCc
Q 044882 752 DLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 752 ~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
.+++|+.|++++|+-...+|..+.+.++....+.++|
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 7777777777776655566654444444444444544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-40 Score=395.83 Aligned_cols=507 Identities=19% Similarity=0.206 Sum_probs=371.5
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcc-ccCcccc-CCccCCEEecCCCCCC-ccchhhhccC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPDSIG-DLRYLRYLNLSGTEIR-TLPESVNKLY 199 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~-~l~~L~~L~L~~~~i~-~lp~~i~~L~ 199 (815)
.+++.|.+.++. +....+..|..+++|++|+|++|++. .+|..+. .+++||+|+|++|.+. .+|. +.++
T Consensus 69 ~~v~~L~L~~~~------i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 69 SRVVSIDLSGKN------ISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred CcEEEEEecCCC------ccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 467777666543 34455667788999999999999887 6787654 8899999999999886 4553 5688
Q ss_pred CCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCcccccccccccccee
Q 044882 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLN 279 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 279 (815)
+|++|++++|.....+|..++++++|++|++++|...+.+|..++++++|++|+....
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n---------------------- 198 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN---------------------- 198 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC----------------------
Confidence 9999999998555578888999999999999998856677877888888887743211
Q ss_pred eecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCC-CCCccCCCC
Q 044882 280 ISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGT-KFPTWFGDS 358 (815)
Q Consensus 280 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~ 358 (815)
.. ....+..+..+++|+.|+++++... .+|..+.
T Consensus 199 --------------------------------~l-----------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-- 233 (968)
T PLN00113 199 --------------------------------QL-----------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-- 233 (968)
T ss_pred --------------------------------CC-----------cCcCChHHcCcCCccEEECcCCccCCcCChhHh--
Confidence 10 0001112223344455555544433 4566655
Q ss_pred CCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCC
Q 044882 359 SFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQ 437 (815)
Q Consensus 359 ~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 437 (815)
.+++|++|++++|.+.+.+| .++.+++|+.|++++|.....++ .
T Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----------------------------------~ 278 (968)
T PLN00113 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-----------------------------------P 278 (968)
T ss_pred cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc-----------------------------------h
Confidence 47888888888888776666 67888888888887764322221 1
Q ss_pred CcccCCCcceeeeccCcccccCCC---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccc
Q 044882 438 GVEGFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSV 514 (815)
Q Consensus 438 ~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 514 (815)
.+..+++|+.|++++| .+.+.+| ..+++|+.|++.+|.........+ ...++
T Consensus 279 ~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~------------------------~~l~~ 333 (968)
T PLN00113 279 SIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL------------------------TSLPR 333 (968)
T ss_pred hHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhH------------------------hcCCC
Confidence 1124667777777774 5555565 345566666665553221100000 11156
Q ss_pred cceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccC
Q 044882 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLH 594 (815)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~ 594 (815)
|+.|++++|.....+|..+ ..+++|+.|++++|.....++. . +..+++|+.++++.|.+.+..|..+.
T Consensus 334 L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~-----~-----~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 334 LQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPE-----G-----LCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCCh-----h-----HhCcCCCCEEECcCCEecccCCHHHh
Confidence 7888888887777777766 7889999999999864433321 1 34457888999999999999999999
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEE
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLT 674 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 674 (815)
.+++|+.|++++|.....+|..+..+++|+.|++++|.+.+.++..+..+++|+.|++++|.....+|.....++|+.|+
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ 481 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLD 481 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEE
Confidence 99999999999999888899999999999999999999999999888899999999999998777777666668999999
Q ss_pred EcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCC
Q 044882 675 IEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQ 754 (815)
Q Consensus 675 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~ 754 (815)
+++|....... ..+..+++|+.|++++ +.....+|. .+..+++|+.|++++|.....+|..+..++
T Consensus 482 ls~n~l~~~~~----~~~~~l~~L~~L~Ls~-N~l~~~~p~---------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 547 (968)
T PLN00113 482 LSRNQFSGAVP----RKLGSLSELMQLKLSE-NKLSGEIPD---------ELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547 (968)
T ss_pred CcCCccCCccC----hhhhhhhccCEEECcC-CcceeeCCh---------HHcCccCCCEEECCCCcccccCChhHhCcc
Confidence 99997654222 4678899999999999 333345554 345788999999999777778888999999
Q ss_pred CCCeeeeCCCCCCcccCC-CCCCCccceeeecCCcch
Q 044882 755 NLASLYLGDCPKLKYFPE-KGLPSSLLQLDIWGCPLI 790 (815)
Q Consensus 755 ~L~~L~i~~c~~l~~l~~-~~~~~~L~~L~i~~c~~l 790 (815)
+|+.|++++|+-...+|. ....++|+.|++++|+-.
T Consensus 548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred cCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 999999999866667776 234578999999998743
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-38 Score=357.34 Aligned_cols=248 Identities=29% Similarity=0.436 Sum_probs=194.8
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeC--CCcccccchhHHHHHHHHHhc
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSS--NSISRFLMHDLINDLAQWAAG 78 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~--~~~~~~~mHdlv~d~a~~~~~ 78 (815)
+|||+|||||+|++++||.|||||||+++.+.++.++|+|+.|+++||++||++... ....+|+|||+|||||.|+|+
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 599999999999999999999999999987778999999999999999999999876 246899999999999999998
Q ss_pred -----cceEEeccc--cccccccCcCCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCcccccccc-cc
Q 044882 79 -----EIYFRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPK-LF 150 (815)
Q Consensus 79 -----~~~~~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~-~~ 150 (815)
++...+... .........+..+|+++++.+.... ...-.+++++++|.+..+..+ ...++.. |.
T Consensus 497 ~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~~-----l~~is~~ff~ 568 (889)
T KOG4658|consen 497 DFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSDW-----LLEISGEFFR 568 (889)
T ss_pred cccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecchh-----hhhcCHHHHh
Confidence 454333322 1111233456788999999875433 344456678999998876420 1233333 57
Q ss_pred CCCcccEEEcCCCC-ccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 151 KLQRLRAFSLRGYH-IFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~-i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
.++.||+|||++|. +..+|++|+.|.+||||+++++.|..+|.++++|++|.+||+..+..+..+|.....|++||+|.
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 89999999999874 78999999999999999999999999999999999999999999977777777777899999999
Q ss_pred ccCCCcccccccccccccccccccceee
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVV 257 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 257 (815)
+.... ...-...++.+.+|++|....+
T Consensus 649 l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 649 LPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eeccc-cccchhhHHhhhcccchhhhee
Confidence 97764 2211222445555555544333
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-32 Score=326.79 Aligned_cols=233 Identities=18% Similarity=0.216 Sum_probs=166.4
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCCCcccccchhHHHHHHHHHhccc
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSISRFLMHDLINDLAQWAAGEI 80 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~~~~~~~ 80 (815)
.|||.||.++.+ +.|..|.|.+.+.. +.-++.|+++||++... .+++|||++||||+++++++
T Consensus 443 l~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 443 RHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred heehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhh
Confidence 478999998755 45888998876642 22388999999998764 57999999999999998765
Q ss_pred e-------EEeccc--cccccccCcCCceeEEEeecccccccc-cccccccCCCceEEccccCCcCcCCCcccccccccc
Q 044882 81 Y-------FRMEYT--SEVNKQQSFSENLRHLSYIPEYCDGVK-RFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF 150 (815)
Q Consensus 81 ~-------~~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~~~~-~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~ 150 (815)
. +.+... ...........+++++++......... ....+.++++|+.|.+........+.....+|..|.
T Consensus 506 ~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~ 585 (1153)
T PLN03210 506 SNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFD 585 (1153)
T ss_pred cCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchh
Confidence 3 111110 011112233456777776544332211 124567888888887754321011122345566665
Q ss_pred CC-CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 151 KL-QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 151 ~l-~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
.+ ..||+|++.++.++.+|..| ...+|++|+++++.+..+|..+..+++|++|+|++|..+..+|. ++.+++|+.|+
T Consensus 586 ~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 586 YLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred hcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 54 46999999999999999887 56899999999999999998889999999999998877888885 88899999999
Q ss_pred ccCCCcccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|..+..+|..++++++|+.|
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEE
Confidence 99988777888777766666666
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-29 Score=251.95 Aligned_cols=187 Identities=18% Similarity=0.249 Sum_probs=145.5
Q ss_pred ccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccC
Q 044882 563 SLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLH 642 (815)
Q Consensus 563 ~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 642 (815)
.|+.-.+++|.++++++++.|++.....+++.++++|+.|++++|.+...-+++|..+++|++|++++|.+...-++.+.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 34444467778888888888888887778888899999999999988777788888889999999999998777777888
Q ss_pred CCCCcCcEEecCCCCCCCCCCC--CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccc
Q 044882 643 NLTSLQELTIGRGVELPSLKED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDK 720 (815)
Q Consensus 643 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 720 (815)
.+..|++|+|++| .+..+.++ ..+++|+.|+|++|.... ...+....|.++++|++|++.+ |++.+++.
T Consensus 339 ~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~g--Nqlk~I~k----- 409 (873)
T KOG4194|consen 339 VLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTG--NQLKSIPK----- 409 (873)
T ss_pred HHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecC--ceeeecch-----
Confidence 8999999999998 66666655 467899999999887543 2222224678899999999998 88999988
Q ss_pred ccccCCCCCCccceEEecCCCCCccc-cccCCCCCCCCeeeeCC
Q 044882 721 RLGTALPLPASLTSLWISGFPNLERL-SSSIVDLQNLASLYLGD 763 (815)
Q Consensus 721 ~l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~ 763 (815)
.+|..++.|+.|+|.+ |-+.+| |..|..+ .|++|.+..
T Consensus 410 ---rAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 410 ---RAFSGLEALEHLDLGD-NAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ---hhhccCcccceecCCC-Ccceeecccccccc-hhhhhhhcc
Confidence 5567788999999998 556665 4466666 888876643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-31 Score=257.83 Aligned_cols=470 Identities=22% Similarity=0.264 Sum_probs=268.0
Q ss_pred ccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCC
Q 044882 145 ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 224 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 224 (815)
+.+++.++..|.+|++.+|.+.++|.+++++..++.|+.++|++.++|+.++.+..|+.|+.++| .+.++|++++.+..
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLD 138 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhh
Confidence 44455667777777777777777777777777777777777777777777777777777777777 66777777777777
Q ss_pred cceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCc
Q 044882 225 LHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLR 304 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 304 (815)
|+.|+..+|. +..+|.+++.+.+|..+..... . ..+..+..-
T Consensus 139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n------------------------~-------l~~l~~~~i------ 180 (565)
T KOG0472|consen 139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGN------------------------K-------LKALPENHI------ 180 (565)
T ss_pred hhhhhccccc-cccCchHHHHHHHHHHhhcccc------------------------c-------hhhCCHHHH------
Confidence 7777777766 6677777766666665521110 0 000000001
Q ss_pred eeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 044882 305 ELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLP 384 (815)
Q Consensus 305 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 384 (815)
..+.|++|+...|....+|..++ .+.+|..|++..|.+ ..+|.|+++.
T Consensus 181 -----------------------------~m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nki-~~lPef~gcs 228 (565)
T KOG0472|consen 181 -----------------------------AMKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNKI-RFLPEFPGCS 228 (565)
T ss_pred -----------------------------HHHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhccc-ccCCCCCccH
Confidence 12344555555555556666665 366666666666653 3455666666
Q ss_pred CcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCC-
Q 044882 385 SLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEH- 463 (815)
Q Consensus 385 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~- 463 (815)
.|++|.+..| .++.++.+... .++++..|++.+ ++++ .+|..
T Consensus 229 ~L~Elh~g~N-~i~~lpae~~~----------------------------------~L~~l~vLDLRd-Nklk-e~Pde~ 271 (565)
T KOG0472|consen 229 LLKELHVGEN-QIEMLPAEHLK----------------------------------HLNSLLVLDLRD-NKLK-EVPDEI 271 (565)
T ss_pred HHHHHHhccc-HHHhhHHHHhc----------------------------------ccccceeeeccc-cccc-cCchHH
Confidence 6666666544 34443332221 344555555555 4555 45522
Q ss_pred --CCCccEEEEecccC--ccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCC-C
Q 044882 464 --LPALEMLVIEGCEE--LLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGT-N 538 (815)
Q Consensus 464 --l~~L~~L~l~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-l 538 (815)
+.+|+.|+++++.. +...++++ .|+.|.+.+|+ +..+...++.++ -
T Consensus 272 clLrsL~rLDlSNN~is~Lp~sLgnl----------------------------hL~~L~leGNP-lrTiRr~ii~~gT~ 322 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISSLPYSLGNL----------------------------HLKFLALEGNP-LRTIRREIISKGTQ 322 (565)
T ss_pred HHhhhhhhhcccCCccccCCcccccc----------------------------eeeehhhcCCc-hHHHHHHHHcccHH
Confidence 23344444443321 11111111 23444444444 222222111000 0
Q ss_pred CCcceEEE-eccCCchhh-----hccccccccceEecccccccccccccccccccCcccccCC--CCCCceEEeccCCCc
Q 044882 539 SSLEDMSI-RQCHSLTYI-----AAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHN--LRQLQEISIRRCGNL 610 (815)
Q Consensus 539 ~~L~~L~l-~~~~~l~~~-----~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~--l~~L~~L~l~~~~~l 610 (815)
.-|++|.= ..|.++..- .....+ +-..-+.......+.++.+.-+++.+..+.|.. -.-....+++.|+ +
T Consensus 323 ~vLKyLrs~~~~dglS~se~~~e~~~t~~-~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq-L 400 (565)
T KOG0472|consen 323 EVLKYLRSKIKDDGLSQSEGGTETAMTLP-SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ-L 400 (565)
T ss_pred HHHHHHHHhhccCCCCCCcccccccCCCC-CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch-H
Confidence 01111110 001010000 000000 111112233344555555555555444333322 1236778888885 6
Q ss_pred ccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcC
Q 044882 611 VSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERG 689 (815)
Q Consensus 611 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~ 689 (815)
..+|.....+..+.+.-+.++...+.+|..+..+++|..|++++| .+.++|.. +.+..|+.|+++.|. +...|
T Consensus 401 ~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr-----Fr~lP 474 (565)
T KOG0472|consen 401 CELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR-----FRMLP 474 (565)
T ss_pred hhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc-----cccch
Confidence 677777766666666555555556777778888999999999998 66667654 567779999999883 22222
Q ss_pred cCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcc
Q 044882 690 RGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKY 769 (815)
Q Consensus 690 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~ 769 (815)
..+..+..++.+-.++ +.+..++. ++ +..+.+|+.||+.+ +.++.+|+.++++++|++|+++++| ++
T Consensus 475 ~~~y~lq~lEtllas~--nqi~~vd~----~~----l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp-fr- 541 (565)
T KOG0472|consen 475 ECLYELQTLETLLASN--NQIGSVDP----SG----LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP-FR- 541 (565)
T ss_pred HHHhhHHHHHHHHhcc--ccccccCh----HH----hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc-cC-
Confidence 3344455566666665 88888887 32 36788999999999 8999999999999999999999965 33
Q ss_pred cCC
Q 044882 770 FPE 772 (815)
Q Consensus 770 l~~ 772 (815)
.|.
T Consensus 542 ~Pr 544 (565)
T KOG0472|consen 542 QPR 544 (565)
T ss_pred CCH
Confidence 554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=5.8e-28 Score=256.30 Aligned_cols=442 Identities=22% Similarity=0.242 Sum_probs=293.9
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
.+..+|++||+++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+| .+..+|.++..+++|+.|+
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLD 120 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccc
Confidence 444559999999999999998898899999999999999999988899999999999888 8888999899999999999
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|. +..+|..+..++.+..+...
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s------------------------------------------------------ 145 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAAS------------------------------------------------------ 145 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhh------------------------------------------------------
Confidence 99888 77777766666555544110
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCe
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKH 388 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 388 (815)
+| . .+..++ -..++.+++..+.+.+.+. .+..+.+ .
T Consensus 146 ~N-~---------------------------------~~~~lg-------~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ 182 (1081)
T KOG0618|consen 146 NN-E---------------------------------KIQRLG-------QTSIKKLDLRLNVLGGSFLIDIYNLTH--Q 182 (1081)
T ss_pred cc-h---------------------------------hhhhhc-------cccchhhhhhhhhcccchhcchhhhhe--e
Confidence 00 0 000011 0115566666665555444 3444333 4
Q ss_pred eeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCCCCCcc
Q 044882 389 LAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALE 468 (815)
Q Consensus 389 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~ 468 (815)
|++.+|... .+. ...+++|+.+.... +++. .+--.-++++
T Consensus 183 ldLr~N~~~-~~d-------------------------------------ls~~~~l~~l~c~r-n~ls-~l~~~g~~l~ 222 (1081)
T KOG0618|consen 183 LDLRYNEME-VLD-------------------------------------LSNLANLEVLHCER-NQLS-ELEISGPSLT 222 (1081)
T ss_pred eecccchhh-hhh-------------------------------------hhhccchhhhhhhh-cccc-eEEecCcchh
Confidence 777666322 110 01344555554443 4444 3333344555
Q ss_pred EEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEec
Q 044882 469 MLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQ 548 (815)
Q Consensus 469 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 548 (815)
.|+..+|+.. +......|.+|++++++.+. +..+|.+. ..+.+|+.+...+
T Consensus 223 ~L~a~~n~l~--------------------------~~~~~p~p~nl~~~dis~n~-l~~lp~wi--~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 223 ALYADHNPLT--------------------------TLDVHPVPLNLQYLDISHNN-LSNLPEWI--GACANLEALNANH 273 (1081)
T ss_pred eeeeccCcce--------------------------eeccccccccceeeecchhh-hhcchHHH--HhcccceEecccc
Confidence 5555555332 22234456789999999886 77788554 7899999999988
Q ss_pred cCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCC-C-CCcceE
Q 044882 549 CHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLP-C-AKLTRL 626 (815)
Q Consensus 549 ~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-l-~~L~~L 626 (815)
+.. ..++.. ++...+|+.+....|.+.... .....+.+|++|+|..|. +..+|..+.. + .+|+.|
T Consensus 274 N~l-~~lp~r----------i~~~~~L~~l~~~~nel~yip-~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~l 340 (1081)
T KOG0618|consen 274 NRL-VALPLR----------ISRITSLVSLSAAYNELEYIP-PFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTL 340 (1081)
T ss_pred hhH-HhhHHH----------HhhhhhHHHHHhhhhhhhhCC-Ccccccceeeeeeehhcc-ccccchHHHhhhhHHHHHH
Confidence 843 444432 344566777777666665443 355668889999998885 5666664332 2 236777
Q ss_pred EecccccccccccccCCCCCcCcEEecCCCCCC-CCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 627 EISSCKRLEALPKGLHNLTSLQELTIGRGVELP-SLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 627 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
+.+.|++.......=..++.|+.|++.+|..-. .+|.......|+.|++++|..-.... ..+.++..|++|++++
T Consensus 341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa----s~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA----SKLRKLEELEELNLSG 416 (1081)
T ss_pred hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH----HHHhchHHhHHHhccc
Confidence 777766433322222356778888888884322 34445567788888888886443222 4577888888888888
Q ss_pred cCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCC-CCCC-Cccceee
Q 044882 706 CDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPE-KGLP-SSLLQLD 783 (815)
Q Consensus 706 ~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~-~~~~-~~L~~L~ 783 (815)
|.++.+|. ....++.|+.|...+ |.+..+| .+..++.|+.+|++ |++|+.+.. ...| ++|+.||
T Consensus 417 --NkL~~Lp~---------tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 417 --NKLTTLPD---------TVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred --chhhhhhH---------HHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceee
Confidence 88888875 235677888888888 7888888 78888999999997 688877644 4456 7899999
Q ss_pred ecCCcch
Q 044882 784 IWGCPLI 790 (815)
Q Consensus 784 i~~c~~l 790 (815)
++|++.+
T Consensus 483 lSGN~~l 489 (1081)
T KOG0618|consen 483 LSGNTRL 489 (1081)
T ss_pred ccCCccc
Confidence 9998853
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2e-24 Score=258.50 Aligned_cols=133 Identities=23% Similarity=0.301 Sum_probs=88.8
Q ss_pred CCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEE
Q 044882 596 LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTI 675 (815)
Q Consensus 596 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 675 (815)
.++|+.|++++|+....+|..+..+++|+.|++++|..++.+|..+ .+++|+.|++++|..+..+|. .+.+|++|++
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeEC
Confidence 5678888888888888888888888888888888888778787765 678888888888877776654 3456777777
Q ss_pred cCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccc
Q 044882 676 EGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERL 746 (815)
Q Consensus 676 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l 746 (815)
++|.... .+..+..+++|+.|++.+ |+++..++. ....+++|+.+++++|..++.+
T Consensus 854 s~n~i~~-----iP~si~~l~~L~~L~L~~-C~~L~~l~~---------~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 854 SRTGIEE-----VPWWIEKFSNLSFLDMNG-CNNLQRVSL---------NISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCcc-----ChHHHhcCCCCCEEECCC-CCCcCccCc---------ccccccCCCeeecCCCcccccc
Confidence 7764322 112345556666666665 455555544 1123455555555555555443
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.7e-26 Score=232.50 Aligned_cols=358 Identities=18% Similarity=0.214 Sum_probs=201.0
Q ss_pred ccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
-++||+++|.+..+ +..|.++++|+.+++..|.++.+|...+...+|+.|+|.+| .+.++. .++..++.||.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh
Confidence 35566666666655 45566666666666666666666666666666666666666 444433 3455666666666666
Q ss_pred CCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEcc
Q 044882 233 TKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTL 312 (815)
Q Consensus 233 ~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 312 (815)
|. +..+|.. .+....++++|+++.|.
T Consensus 159 N~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 159 NL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLASNR 184 (873)
T ss_pred ch-hhcccCC-----------------------------------------------------CCCCCCCceEEeecccc
Confidence 65 4444321 01112233444444443
Q ss_pred CCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCC-CCCCCCCCCcCeeee
Q 044882 313 STDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTA-LPSVGQLPSLKHLAV 391 (815)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~l 391 (815)
++ ......+..+.+|..|.|+.|.++.+|...+. .++.|+.|+|..|.+... --.|.++++|+.|.+
T Consensus 185 It-----------~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 185 IT-----------TLETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred cc-----------ccccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 31 01112223333455555555555555554442 355555555555554332 124555555555555
Q ss_pred ccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----CCCCCc
Q 044882 392 CGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP----EHLPAL 467 (815)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L 467 (815)
..|. +..+.. ..+..+.++++|+++. |++. .+. -++.+|
T Consensus 253 qrN~-I~kL~D----------------------------------G~Fy~l~kme~l~L~~-N~l~-~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 253 QRND-ISKLDD----------------------------------GAFYGLEKMEHLNLET-NRLQ-AVNEGWLFGLTSL 295 (873)
T ss_pred hhcC-cccccC----------------------------------cceeeecccceeeccc-chhh-hhhcccccccchh
Confidence 5542 222211 1122566777777776 5555 222 234555
Q ss_pred cEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEe
Q 044882 468 EMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIR 547 (815)
Q Consensus 468 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 547 (815)
+.|+++.+..- ..++.. -.+.++|+.|+++.|. +..++...+ ..+..|++|+++
T Consensus 296 ~~L~lS~NaI~-----------rih~d~-------------WsftqkL~~LdLs~N~-i~~l~~~sf-~~L~~Le~LnLs 349 (873)
T KOG4194|consen 296 EQLDLSYNAIQ-----------RIHIDS-------------WSFTQKLKELDLSSNR-ITRLDEGSF-RVLSQLEELNLS 349 (873)
T ss_pred hhhccchhhhh-----------eeecch-------------hhhcccceeEeccccc-cccCChhHH-HHHHHhhhhccc
Confidence 55655554221 111111 1222567778887776 444444433 667788888888
Q ss_pred ccCCchhhhccccccccceEecccccccccccccccccccCc---ccccCCCCCCceEEeccCCCcccccC-CCCCCCCc
Q 044882 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS---RSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKL 623 (815)
Q Consensus 548 ~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L 623 (815)
+|. +.+ |..-.+.++.+|+.|++++|.++..+ ...|.++++|+.|++.+|+ ++.+|. ++..+++|
T Consensus 350 ~Ns-i~~---------l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 350 HNS-IDH---------LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEAL 418 (873)
T ss_pred ccc-hHH---------HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCccc
Confidence 873 333 33334556777888888888776544 3345667888888888775 455544 67777888
Q ss_pred ceEEecccccccccccccCCCCCcCcEEecC
Q 044882 624 TRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
+.|++.+|.+...-|..|..+ .|++|.+..
T Consensus 419 E~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 888888888777777777777 777776654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.9e-29 Score=240.27 Aligned_cols=246 Identities=25% Similarity=0.271 Sum_probs=162.4
Q ss_pred cccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhh
Q 044882 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVN 196 (815)
Q Consensus 117 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 196 (815)
++..++..+.+|.+.++. -...|+.++++..+..|+.++|++..+|+.++.+..|+.|+.++|.+.++|++|+
T Consensus 62 ~dl~nL~~l~vl~~~~n~-------l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNK-------LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred HhhhcccceeEEEeccch-------hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH
Confidence 344455555666555442 1455666677777777777777777777777777777777777777777777777
Q ss_pred ccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccC-CCCCccccccccccc
Q 044882 197 KLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKG-SGSGLRELKLLTHLH 275 (815)
Q Consensus 197 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~-~~~~~~~l~~L~~L~ 275 (815)
.+..|+.|+..+| .+..+|.+++.+.+|..|++.+|+ +..+|+..-+++.|++|+.....-. -+..++.+.+|..|.
T Consensus 135 ~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 135 RLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY 212 (565)
T ss_pred HHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH
Confidence 7777777777776 677777777777777777777776 6666665444667766643221111 112222222222221
Q ss_pred cceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccC
Q 044882 276 GTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWF 355 (815)
Q Consensus 276 ~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~ 355 (815)
+.-+.+.. . ..+.++..|.++++..|.+ +.-.-+....++++..|++..|+.+++|+.+
T Consensus 213 --L~~Nki~~-------l-Pef~gcs~L~Elh~g~N~i-----------~~lpae~~~~L~~l~vLDLRdNklke~Pde~ 271 (565)
T KOG0472|consen 213 --LRRNKIRF-------L-PEFPGCSLLKELHVGENQI-----------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI 271 (565)
T ss_pred --hhhccccc-------C-CCCCccHHHHHHHhcccHH-----------HhhHHHHhcccccceeeeccccccccCchHH
Confidence 11111111 1 1366777788888776654 3333445567889999999999999999987
Q ss_pred CCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCC
Q 044882 356 GDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMS 395 (815)
Q Consensus 356 ~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 395 (815)
. .+.+|++|++++|.+..-.+.++++ +|+.|.+.||+
T Consensus 272 c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 272 C--LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred H--HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 6 4888999999999987766699999 99999999986
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=8.8e-28 Score=243.19 Aligned_cols=161 Identities=17% Similarity=0.260 Sum_probs=102.2
Q ss_pred ccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccc--cccchhhc
Q 044882 143 YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRL--KKLCADMG 220 (815)
Q Consensus 143 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l--~~lp~~i~ 220 (815)
..+|.+...|..++.|.|.+..+..+|+.++.+.+|+.|.+++|++..+-..++.|+.||.+++++| ++ ..+|..|-
T Consensus 22 ~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF 100 (1255)
T KOG0444|consen 22 DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NLKNSGIPTDIF 100 (1255)
T ss_pred CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-ccccCCCCchhc
Confidence 3455555566666666666666666666666666666666666666655555666666666666655 33 24566666
Q ss_pred CcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCC
Q 044882 221 NLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGK 300 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 300 (815)
.|..|..||+++|+ +...|.++..
T Consensus 101 ~l~dLt~lDLShNq-L~EvP~~LE~------------------------------------------------------- 124 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LREVPTNLEY------------------------------------------------------- 124 (1255)
T ss_pred ccccceeeecchhh-hhhcchhhhh-------------------------------------------------------
Confidence 66666666666665 5555544322
Q ss_pred cCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCC
Q 044882 301 KNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSV 380 (815)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 380 (815)
-+++-.|+|++|.+.++|..++. +++-|-.|+|++|.+..-.|.+
T Consensus 125 ----------------------------------AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 125 ----------------------------------AKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred ----------------------------------hcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHH
Confidence 22444556666777777776653 5677778888888866555577
Q ss_pred CCCCCcCeeeeccCC
Q 044882 381 GQLPSLKHLAVCGMS 395 (815)
Q Consensus 381 ~~l~~L~~L~l~~~~ 395 (815)
..+.+|+.|.+++|+
T Consensus 170 RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNP 184 (1255)
T ss_pred HHHhhhhhhhcCCCh
Confidence 888888888888875
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-27 Score=253.00 Aligned_cols=462 Identities=21% Similarity=0.220 Sum_probs=314.8
Q ss_pred cccccccCCCcccEEEcCCCCccccCc-cccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCc
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNL 222 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 222 (815)
.+|..+..-..+..|+++.|.+-..|- .+.+-.+|+.||+++|.+...|..|..+.+|+.|+++.| .+...|.+++++
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNM 90 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhh
Confidence 344455444457788888887666552 234445588888888888888888888888888888887 788888888888
Q ss_pred CCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcC
Q 044882 223 AKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKN 302 (815)
Q Consensus 223 ~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~ 302 (815)
.+|++|.|.+|. +..+|.++..+++|+.|
T Consensus 91 ~~l~~lnL~~n~-l~~lP~~~~~lknl~~L-------------------------------------------------- 119 (1081)
T KOG0618|consen 91 RNLQYLNLKNNR-LQSLPASISELKNLQYL-------------------------------------------------- 119 (1081)
T ss_pred hcchhheeccch-hhcCchhHHhhhccccc--------------------------------------------------
Confidence 888888888777 77777776666555555
Q ss_pred CceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCC
Q 044882 303 LRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQ 382 (815)
Q Consensus 303 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 382 (815)
++++|....+|..+. .+..++.+..++|.....++..+
T Consensus 120 ---------------------------------------dlS~N~f~~~Pl~i~--~lt~~~~~~~s~N~~~~~lg~~~- 157 (1081)
T KOG0618|consen 120 ---------------------------------------DLSFNHFGPIPLVIE--VLTAEEELAASNNEKIQRLGQTS- 157 (1081)
T ss_pred ---------------------------------------ccchhccCCCchhHH--hhhHHHHHhhhcchhhhhhcccc-
Confidence 233333445565554 36667777777773333333221
Q ss_pred CCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcc-eeeeccCcccccCCC
Q 044882 383 LPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLR-ELHILRCSKLKGTFP 461 (815)
Q Consensus 383 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~lp 461 (815)
.+.+++..+..-..+.. ....++ .|++.+ +++. ...
T Consensus 158 ---ik~~~l~~n~l~~~~~~--------------------------------------~i~~l~~~ldLr~-N~~~-~~d 194 (1081)
T KOG0618|consen 158 ---IKKLDLRLNVLGGSFLI--------------------------------------DIYNLTHQLDLRY-NEME-VLD 194 (1081)
T ss_pred ---chhhhhhhhhcccchhc--------------------------------------chhhhheeeeccc-chhh-hhh
Confidence 55555544421111110 111222 255544 3333 111
Q ss_pred -CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCC
Q 044882 462 -EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSS 540 (815)
Q Consensus 462 -~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 540 (815)
..++.|+.+....+ .|..+.+.+ ++|+.|+..+|...+..+. ....+
T Consensus 195 ls~~~~l~~l~c~rn-----------~ls~l~~~g-----------------~~l~~L~a~~n~l~~~~~~----p~p~n 242 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERN-----------QLSELEISG-----------------PSLTALYADHNPLTTLDVH----PVPLN 242 (1081)
T ss_pred hhhccchhhhhhhhc-----------ccceEEecC-----------------cchheeeeccCcceeeccc----ccccc
Confidence 22333333322222 222222211 6789999999987643332 34578
Q ss_pred cceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCC
Q 044882 541 LEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPC 620 (815)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l 620 (815)
|+.++++++. +..+| -.+..|.+|+.++..+|.+ ...|..+...++|+.|.+.+|. +..+|....++
T Consensus 243 l~~~dis~n~-l~~lp----------~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~ 309 (1081)
T KOG0618|consen 243 LQYLDISHNN-LSNLP----------EWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGL 309 (1081)
T ss_pred ceeeecchhh-hhcch----------HHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCccccc
Confidence 9999999883 33333 2366799999999999999 4456677788999999999996 77788888889
Q ss_pred CCcceEEecccccccccccc-cCCCC-CcCcEEecCCCCCCCCCCC--CCCCCCceEEEcCCcchhhhhhhcCcCcccCC
Q 044882 621 AKLTRLEISSCKRLEALPKG-LHNLT-SLQELTIGRGVELPSLKED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFS 696 (815)
Q Consensus 621 ~~L~~L~l~~~~~~~~~~~~-~~~l~-~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 696 (815)
.+|++|++..|.+ ..+|.. +.-.. +|..|+.+.| .+...|.. ...+.|+.|++.+|......+ ..+.+..
T Consensus 310 ~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~----p~l~~~~ 383 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCF----PVLVNFK 383 (1081)
T ss_pred ceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccch----hhhcccc
Confidence 9999999999985 455553 33333 3788888887 45555544 366889999999998777666 3588999
Q ss_pred CccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCC
Q 044882 697 SLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLP 776 (815)
Q Consensus 697 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 776 (815)
.|+.|++++ |.+.+||. ..+..+..|++|+||| |+++.+|..+..++.|++|...+ +.|..+|+....
T Consensus 384 hLKVLhLsy--NrL~~fpa--------s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l 451 (1081)
T KOG0618|consen 384 HLKVLHLSY--NRLNSFPA--------SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQL 451 (1081)
T ss_pred ceeeeeecc--cccccCCH--------HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechhhhhc
Confidence 999999999 99999998 4457889999999999 89999999999999999999987 799999987778
Q ss_pred CccceeeecCCcchHHHHhccCCCccccccc
Q 044882 777 SSLLQLDIWGCPLIEEKCRKDGGQYWDLLTH 807 (815)
Q Consensus 777 ~~L~~L~i~~c~~l~~~~~~~~~~~w~~~~~ 807 (815)
+.|+.+|++.+ .|+..-. .....|+++.+
T Consensus 452 ~qL~~lDlS~N-~L~~~~l-~~~~p~p~Lky 480 (1081)
T KOG0618|consen 452 PQLKVLDLSCN-NLSEVTL-PEALPSPNLKY 480 (1081)
T ss_pred CcceEEecccc-hhhhhhh-hhhCCCcccce
Confidence 99999999854 4444333 22344544443
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=3.3e-26 Score=231.86 Aligned_cols=159 Identities=19% Similarity=0.286 Sum_probs=85.6
Q ss_pred CCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCC
Q 044882 537 TNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEG 616 (815)
Q Consensus 537 ~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 616 (815)
.+++|+.|.+++.... ...+|++|. ++.+|..+++|.|++. ..|+.+.++++|+.|+|++|. ++.+..+
T Consensus 195 smtsL~vLhms~TqRT----l~N~Ptsld-----~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~-iteL~~~ 263 (1255)
T KOG0444|consen 195 SMTSLSVLHMSNTQRT----LDNIPTSLD-----DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK-ITELNMT 263 (1255)
T ss_pred cchhhhhhhcccccch----hhcCCCchh-----hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc-eeeeecc
Confidence 3445555555544321 113443432 3456666677666654 335566677777777777775 3444444
Q ss_pred CCCCCCcceEEecccccccccccccCCCCCcCcEEecCCC-CCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcCccc
Q 044882 617 GLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGV-ELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHR 694 (815)
Q Consensus 617 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 694 (815)
.....+|++|++++|+ +..+|..+..+++|+.|.+.+|. ....+|++ |.+.+|+.+...+|..-- .|.++.+
T Consensus 264 ~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-----VPEglcR 337 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-----VPEGLCR 337 (1255)
T ss_pred HHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-----Cchhhhh
Confidence 4555677777777776 45677777777777777777763 12223322 444455555554442111 1234444
Q ss_pred CCCccEEEEeccCCCcccCC
Q 044882 695 FSSLRQLTIINCDDDMVSFP 714 (815)
Q Consensus 695 l~~L~~L~l~~~~~~~~~~~ 714 (815)
+..|+.|.++. |.+..+|
T Consensus 338 C~kL~kL~L~~--NrLiTLP 355 (1255)
T KOG0444|consen 338 CVKLQKLKLDH--NRLITLP 355 (1255)
T ss_pred hHHHHHhcccc--cceeech
Confidence 45555554443 4444444
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=3.6e-16 Score=173.27 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccC
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 232 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 232 (815)
..-.+|+++++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 335678888888888887775 3788888888888888753 467888888887 67777753 35677777777
Q ss_pred CCcccccc
Q 044882 233 TKSLEEMP 240 (815)
Q Consensus 233 ~~~l~~~p 240 (815)
|. +..+|
T Consensus 272 N~-L~~Lp 278 (788)
T PRK15387 272 NP-LTHLP 278 (788)
T ss_pred Cc-hhhhh
Confidence 75 44444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=1.1e-17 Score=161.85 Aligned_cols=107 Identities=27% Similarity=0.319 Sum_probs=74.2
Q ss_pred cccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCC-CCCCccc-hhhhccCCCcEEeccCCccccccchhhcCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSG-TEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGNL 222 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 222 (815)
+..|..+++||.|||++|.|+.+ |++|..+..|..|-+.+ |+|+.+| ..|++|..|+.|.+.-|..-......+..|
T Consensus 84 ~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL 163 (498)
T KOG4237|consen 84 PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDL 163 (498)
T ss_pred hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHh
Confidence 34557777777777777777766 77777777777666665 6777777 566777777777777763333334556777
Q ss_pred CCcceeeccCCCcccccccc-ccccccccccc
Q 044882 223 AKLHHLKNSNTKSLEEMPVG-IGRLTSLQTLC 253 (815)
Q Consensus 223 ~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~ 253 (815)
++|..|.+.+|. ++.++.+ +..+.+++++.
T Consensus 164 ~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 164 PSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhcchhcccchh-hhhhccccccchhccchHh
Confidence 777777777776 6667664 66677777664
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=4e-17 Score=158.00 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=119.3
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccC
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE 615 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 615 (815)
..+++|++|++++| .++.+..+ .+.+...++.|.+..|.+..+....|.++..|+.|+|++|++....|.
T Consensus 271 ~~L~~L~~lnlsnN-~i~~i~~~---------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNN-KITRIEDG---------AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred hhcccceEeccCCC-ccchhhhh---------hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 56667777777666 23333322 234555666666666776666666677777777777777776666677
Q ss_pred CCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhh--hh-----
Q 044882 616 GGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSM--IE----- 687 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~----- 687 (815)
+|..+.+|.+|.+-.|++.-.-. .+++. .+.... ....|..+.+..++.+.+++...-.... ++
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~-------Wlr~~~-~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~ 412 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGE-------WLRKKS-VVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCL 412 (498)
T ss_pred cccccceeeeeehccCcccCccchHHHHH-------HHhhCC-CCCCCCCCCCchhccccchhccccccccCCccccCCC
Confidence 77777777777776665422100 00000 001111 1222333445556666665543221110 00
Q ss_pred -cCcCcccCCCccEE-EEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCC
Q 044882 688 -RGRGFHRFSSLRQL-TIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 688 -~~~~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 765 (815)
.+.....++.+.+. ..+ +..+..+|. +.|..-++|++.+ +.++.+|.. .+.+| .+++++ +
T Consensus 413 ~s~~cP~~c~c~~tVvRcS--nk~lk~lp~-----------~iP~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~-n 474 (498)
T KOG4237|consen 413 TSSPCPPPCTCLDTVVRCS--NKLLKLLPR-----------GIPVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSN-N 474 (498)
T ss_pred CCCCCCCCcchhhhhHhhc--ccchhhcCC-----------CCCchhHHHhccc-chhcccCHH--HHhhh-hccccc-C
Confidence 00112233444433 222 366677776 5677888999999 788899876 56778 889987 5
Q ss_pred CCcccCCCCC--CCccceeeecC
Q 044882 766 KLKYFPEKGL--PSSLLQLDIWG 786 (815)
Q Consensus 766 ~l~~l~~~~~--~~~L~~L~i~~ 786 (815)
.+..+....+ .+.|.+|.+++
T Consensus 475 ~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 475 RISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred ceehhhcccccchhhhheeEEec
Confidence 6766655333 24555665553
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=3e-14 Score=158.19 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred CCccceEEecCCCCCccccccCCCCCCCCeeeeCCC
Q 044882 729 PASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 729 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
+.+|+.|++++ |.++.+|..+..+++|+.|+++++
T Consensus 421 ~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 421 PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence 34556666666 556666666666666666666664
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=2.5e-16 Score=134.36 Aligned_cols=106 Identities=29% Similarity=0.436 Sum_probs=87.7
Q ss_pred cccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 225 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 225 (815)
.+.+..+.+++.|-|++|+++.+|..|..+++|++|++++|+|+++|.+|+.+++|++|+++-| .+..+|.+||.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchh
Confidence 3445677788889999999999999999999999999999999999999999999999999988 888999999999999
Q ss_pred ceeeccCCCccc-ccccccccccccccc
Q 044882 226 HHLKNSNTKSLE-EMPVGIGRLTSLQTL 252 (815)
Q Consensus 226 ~~L~l~~~~~l~-~~p~~i~~L~~L~~L 252 (815)
+.||+.+|..-+ .+|..+--|+.|+-|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHH
Confidence 999999887322 456555555555544
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.51 E-value=2.2e-14 Score=163.11 Aligned_cols=148 Identities=28% Similarity=0.329 Sum_probs=109.7
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCC--ccccCcc-ccCCccCCEEecCCCC-CCccch
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYH--IFELPDS-IGDLRYLRYLNLSGTE-IRTLPE 193 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~--i~~lp~~-~~~l~~L~~L~L~~~~-i~~lp~ 193 (815)
...+...+|......+.. ..++.. ...+.|++|-+.+|. +..++.. |..++.||+|||++|. +.++|.
T Consensus 518 ~~~~~~~~rr~s~~~~~~-------~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKI-------EHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccchhheeEEEEeccch-------hhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 334455667666655431 112222 344479999999986 6677644 7889999999999874 789999
Q ss_pred hhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeec-cCCCCCcccccccc
Q 044882 194 SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVG-KGSGSGLRELKLLT 272 (815)
Q Consensus 194 ~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L~ 272 (815)
+|++|.+||+|+++++ .+..+|.++++|++|.+|++..+..+..+|.....|.+||+|..+... ..+...+.++..|+
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 9999999999999999 899999999999999999999998777776667779999999766554 22233344444444
Q ss_pred cc
Q 044882 273 HL 274 (815)
Q Consensus 273 ~L 274 (815)
+|
T Consensus 669 ~L 670 (889)
T KOG4658|consen 669 HL 670 (889)
T ss_pred ch
Confidence 33
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=9.7e-14 Score=155.36 Aligned_cols=83 Identities=19% Similarity=0.363 Sum_probs=67.0
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccC
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 232 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 232 (815)
.+...|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 356789999999999987764 589999999999999997765 58999999998 7888887664 4789999998
Q ss_pred CCccccccccc
Q 044882 233 TKSLEEMPVGI 243 (815)
Q Consensus 233 ~~~l~~~p~~i 243 (815)
|. +..+|..+
T Consensus 251 N~-L~~LP~~l 260 (754)
T PRK15370 251 NR-ITELPERL 260 (754)
T ss_pred Cc-cCcCChhH
Confidence 87 66666544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=4.5e-16 Score=132.80 Aligned_cols=129 Identities=26% Similarity=0.384 Sum_probs=113.5
Q ss_pred ccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhh
Q 044882 116 FEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV 195 (815)
Q Consensus 116 ~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 195 (815)
.+.+.++++...|.+..+. ....|+.+..+++|++|++.+|+|+++|.+++.++.||.|+++-|.+..+|..+
T Consensus 26 ~~gLf~~s~ITrLtLSHNK-------l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNK-------LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cccccchhhhhhhhcccCc-------eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 3445566677777666543 256788999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcEEeccCCccc--cccchhhcCcCCcceeeccCCCccccccccccccccccccc
Q 044882 196 NKLYNLHSLLLEDCDRL--KKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 196 ~~L~~L~~L~L~~~~~l--~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
|.++.|++|||.+| .+ ..+|..|-.++.|+.|++++|. .+-+|.++++|++||.|.
T Consensus 99 gs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 99 GSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILS 156 (264)
T ss_pred CCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEe
Confidence 99999999999998 44 4689999999999999999998 899999999999999983
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.1e-13 Score=152.65 Aligned_cols=231 Identities=22% Similarity=0.306 Sum_probs=139.9
Q ss_pred CCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccccc
Q 044882 506 GHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQ 585 (815)
Q Consensus 506 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~ 585 (815)
.+|..+|+.|+.|++++|. +..+|... ..+|+.|++++|. ++.+|. .+| +.|+.|++++|.+
T Consensus 192 sLP~~Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N~-LtsLP~-~l~-----------~~L~~L~Ls~N~L 253 (754)
T PRK15370 192 TIPACIPEQITTLILDNNE-LKSLPENL----QGNIKTLYANSNQ-LTSIPA-TLP-----------DTIQEMELSINRI 253 (754)
T ss_pred cCCcccccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCCc-cccCCh-hhh-----------ccccEEECcCCcc
Confidence 3444455667777777774 55566543 2467777777763 444432 122 2345555555555
Q ss_pred ccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCC
Q 044882 586 SSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG 665 (815)
Q Consensus 586 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 665 (815)
.. +|..+. .+|+.|++++|. +..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++| .++.+|. .
T Consensus 254 ~~-LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N-~Lt~LP~-~ 322 (754)
T PRK15370 254 TE-LPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSN-SLTALPE-T 322 (754)
T ss_pred Cc-CChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCC-ccccCCc-c
Confidence 42 233332 467888887765 445666543 47888888887654 3454332 46778888887 4454543 2
Q ss_pred CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcc
Q 044882 666 LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLER 745 (815)
Q Consensus 666 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 745 (815)
.+++|+.|++++|..... + ..+ .++|+.|++++ +++..+|. ..+++|+.|+|++ +.++.
T Consensus 323 l~~sL~~L~Ls~N~Lt~L-P----~~l--~~sL~~L~Ls~--N~L~~LP~-----------~lp~~L~~LdLs~-N~Lt~ 381 (754)
T PRK15370 323 LPPGLKTLEAGENALTSL-P----ASL--PPELQVLDVSK--NQITVLPE-----------TLPPTITTLDVSR-NALTN 381 (754)
T ss_pred ccccceeccccCCccccC-C----hhh--cCcccEEECCC--CCCCcCCh-----------hhcCCcCEEECCC-CcCCC
Confidence 346788888887754321 1 112 25788888887 45666664 2356788888888 46777
Q ss_pred ccccCCCCCCCCeeeeCCCCCCcccCCC-----CCCCccceeeecCCcc
Q 044882 746 LSSSIVDLQNLASLYLGDCPKLKYFPEK-----GLPSSLLQLDIWGCPL 789 (815)
Q Consensus 746 l~~~~~~l~~L~~L~i~~c~~l~~l~~~-----~~~~~L~~L~i~~c~~ 789 (815)
+|..+. .+|+.|++++ +++..+|.. +..+++..|++.++|-
T Consensus 382 LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 382 LPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 776543 3688888887 467777651 1235677788888774
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=7.9e-12 Score=130.66 Aligned_cols=188 Identities=19% Similarity=0.136 Sum_probs=90.5
Q ss_pred ccccccccccccccccCcccccCCCC---CCceEEeccCCCcc----cccCCCCCC-CCcceEEeccccccc----cccc
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGLHNLR---QLQEISIRRCGNLV----SFPEGGLPC-AKLTRLEISSCKRLE----ALPK 639 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~~~l~---~L~~L~l~~~~~l~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~ 639 (815)
+++|+.+++++|.+.+..+..+..+. +|++|++++|.... .+...+..+ ++|++|++++|.+.+ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 44555555555555443333333333 37777777765431 111223334 677777777776552 2233
Q ss_pred ccCCCCCcCcEEecCCCCCCC----CC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCC
Q 044882 640 GLHNLTSLQELTIGRGVELPS----LK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFP 714 (815)
Q Consensus 640 ~~~~l~~L~~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 714 (815)
.+..+++|++|++++|..... ++ .....++|++|++++|.............+..+++|+.|++++| .+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n--~l~~~~ 237 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN--NLTDAG 237 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC--cCchHH
Confidence 455566777777777632210 00 01223567777777765432222111134455667777777762 222100
Q ss_pred CCccccccccCCCCCCccceEEecCCCCC----ccccccCCCCCCCCeeeeCCC
Q 044882 715 PKADDKRLGTALPLPASLTSLWISGFPNL----ERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 715 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~i~~c 764 (815)
.....+. .....+.|+.|++++|..- ..+...+..+++|++++++++
T Consensus 238 ~~~l~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 238 AAALASA---LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHH---HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 0000000 0011356777777765322 123334445566777777663
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=8.1e-12 Score=130.55 Aligned_cols=195 Identities=23% Similarity=0.183 Sum_probs=123.8
Q ss_pred ccccCCCCCCceEEeccCCCcccccCCCCCC---CCcceEEeccccccc----ccccccCCC-CCcCcEEecCCCCCCC-
Q 044882 590 RSGLHNLRQLQEISIRRCGNLVSFPEGGLPC---AKLTRLEISSCKRLE----ALPKGLHNL-TSLQELTIGRGVELPS- 660 (815)
Q Consensus 590 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~- 660 (815)
+..+..+++|+.|++++|......+..+..+ ++|++|++++|.+.. .+...+..+ ++|+.|++++|.....
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 3456678999999999998654444333333 459999999998763 233345666 8999999999953311
Q ss_pred ---CC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEE
Q 044882 661 ---LK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLW 736 (815)
Q Consensus 661 ---~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 736 (815)
+. ....+.+|++|++++|..........+..+..+++|+.|++++| .+..... ..+...+...++|+.|+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~----~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN--GLTDEGA----SALAETLASLKSLEVLN 227 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC--ccChHHH----HHHHHHhcccCCCCEEe
Confidence 11 11345689999999997553222221234556689999999983 3322111 11222345678999999
Q ss_pred ecCCCCCcc-----ccccC-CCCCCCCeeeeCCCCCCc-----ccCC-CCCCCccceeeecCCcchHH
Q 044882 737 ISGFPNLER-----LSSSI-VDLQNLASLYLGDCPKLK-----YFPE-KGLPSSLLQLDIWGCPLIEE 792 (815)
Q Consensus 737 l~~c~~l~~-----l~~~~-~~l~~L~~L~i~~c~~l~-----~l~~-~~~~~~L~~L~i~~c~~l~~ 792 (815)
+++|+ ++. +...+ ...+.|++|++++| .++ .+.. ....++|+.+++++|+--.+
T Consensus 228 ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 228 LGDNN-LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred cCCCc-CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 99964 442 11111 13589999999997 443 1111 11236899999999875433
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.5e-10 Score=102.67 Aligned_cols=132 Identities=25% Similarity=0.289 Sum_probs=55.8
Q ss_pred cccccCCCceEEccccCCcCcCCCcccccccccc-CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhh
Q 044882 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLF-KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV 195 (815)
Q Consensus 117 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 195 (815)
+...+..++|.|.+.++. ......+. .+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.++..+
T Consensus 13 ~~~~n~~~~~~L~L~~n~--------I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ--------ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccc--------cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 344455677888777654 23345564 5789999999999999885 5888999999999999999997666
Q ss_pred -hccCCCcEEeccCCccccccc--hhhcCcCCcceeeccCCCccccccc----ccccccccccccceeecc
Q 044882 196 -NKLYNLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVVGK 259 (815)
Q Consensus 196 -~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~~~ 259 (815)
..+++|++|++++| .+..+. ..+..+++|++|++.+|. +...+. -+..+++|+.|+...+..
T Consensus 84 ~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 84 DKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp HHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred HHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 46999999999998 665543 346788999999999998 444442 277889999998665543
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.00 E-value=6.9e-12 Score=123.30 Aligned_cols=281 Identities=17% Similarity=0.272 Sum_probs=124.4
Q ss_pred CCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCccccc--
Q 044882 381 GQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKG-- 458 (815)
Q Consensus 381 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-- 458 (815)
...|++++|.+.+|.+++...-..+.. -+++|+.+.+..|..+.+..-.. -...+++|++++++.|+.+++
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~----~C~~l~~l~L~~c~~iT~~~Lk~---la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLAR----YCRKLRHLNLHSCSSITDVSLKY---LAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHH----hcchhhhhhhcccchhHHHHHHH---HHHhhhhHHHhhhccCchhhcCc
Confidence 344555555555555443322111111 13444444444444443322100 011577777777777777664
Q ss_pred --CCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcC
Q 044882 459 --TFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCG 536 (815)
Q Consensus 459 --~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 536 (815)
.+..+...++.+...+|.. .....+....... .-+.++++..|..++....+....
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e---------------------~~le~l~~~~~~~-~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLE---------------------LELEALLKAAAYC-LEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred chHHhccchhhhhhhhccccc---------------------ccHHHHHHHhccC-hHhhccchhhhccccchHHHHHhh
Confidence 1223333344444444433 2222211111111 123344444555555544444445
Q ss_pred CCCCcceEEEeccCCchhhhccccc---cccceEecccccccccccccccccccCccccc-CCCCCCceEEeccCCCccc
Q 044882 537 TNSSLEDMSIRQCHSLTYIAAVQLP---LSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGL-HNLRQLQEISIRRCGNLVS 612 (815)
Q Consensus 537 ~l~~L~~L~l~~~~~l~~~~~~~l~---~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~ 612 (815)
.+..|+.|..++|..+++.+...+. .+|+.+.+..|..+....+ ..+ .+++.|+.+++..|.....
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f----------t~l~rn~~~Le~l~~e~~~~~~d 361 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF----------TMLGRNCPHLERLDLEECGLITD 361 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh----------hhhhcCChhhhhhcccccceehh
Confidence 5556666666666555444433221 1344444444443222111 011 2356666666666643221
Q ss_pred --ccCCCCCCCCcceEEeccccccccc-----ccccCCCCCcCcEEecCCCCCCCC--CCCCCCCCCceEEEcCCcchhh
Q 044882 613 --FPEGGLPCAKLTRLEISSCKRLEAL-----PKGLHNLTSLQELTIGRGVELPSL--KEDGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 613 --~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~ 683 (815)
+-.....++.|++|.+++|...+.. ...-.++..|+.+.+++|+.++.- .....+++|+.+++.+|.....
T Consensus 362 ~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 362 GTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 2222334566666666666543322 111234455666666666655431 1123455666666666655443
Q ss_pred hhhhcCcCcccCCCccEEE
Q 044882 684 SMIERGRGFHRFSSLRQLT 702 (815)
Q Consensus 684 ~~~~~~~~~~~l~~L~~L~ 702 (815)
.... ..-+++|+++...
T Consensus 442 ~~i~--~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 442 EAIS--RFATHLPNIKVHA 458 (483)
T ss_pred hhhH--HHHhhCccceehh
Confidence 3322 2233444444433
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.92 E-value=4.1e-11 Score=117.97 Aligned_cols=89 Identities=16% Similarity=0.318 Sum_probs=47.0
Q ss_pred CCccEEEEecccCccc-----cCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCC
Q 044882 465 PALEMLVIEGCEELLV-----SVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNS 539 (815)
Q Consensus 465 ~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 539 (815)
.-|+.|.+.+|..... ....+|+++.|.+.+|..+.......+... .+.|+++++..|..++...-...+..++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~-C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARY-CRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHh-cchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 3466777777765422 223466666666666665543332222222 2456666666666555554443335566
Q ss_pred CcceEEEeccCCchh
Q 044882 540 SLEDMSIRQCHSLTY 554 (815)
Q Consensus 540 ~L~~L~l~~~~~l~~ 554 (815)
+|++|+++.|+.++.
T Consensus 217 kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISG 231 (483)
T ss_pred hHHHhhhccCchhhc
Confidence 666666666655443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.7e-10 Score=117.91 Aligned_cols=106 Identities=28% Similarity=0.490 Sum_probs=71.5
Q ss_pred cccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcC
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLA 223 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 223 (815)
.+|..+..+..|..+.|..|.+..+|.+++++..|.+|||+.|++..+|..++.|+ |+.|-+++| +++.+|.+++.+.
T Consensus 89 elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~ 166 (722)
T KOG0532|consen 89 ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLP 166 (722)
T ss_pred cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccch
Confidence 34555555666666667777776677777777777777777777777776666665 666666666 6667777777666
Q ss_pred CcceeeccCCCcccccccccccccccccc
Q 044882 224 KLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 224 ~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+|.+||.+.|. +..+|..++.+.+|+.|
T Consensus 167 tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 167 TLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 77777777666 66666666666666665
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=5.6e-09 Score=112.29 Aligned_cols=104 Identities=33% Similarity=0.484 Sum_probs=91.6
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCc-cCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcc
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLR-YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLH 226 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 226 (815)
.+..++.++.|++.++.++.+|.....+. +|+.|++++|++..+|..++.+++|+.|++++| .+..+|...+.+++|+
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 34556789999999999999998888885 999999999999999989999999999999999 8999999877999999
Q ss_pred eeeccCCCccccccccccccccccccc
Q 044882 227 HLKNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 227 ~L~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
.|++++|. +..+|..++.+..|+++.
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~ 215 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELD 215 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhh
Confidence 99999998 888888776666677774
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=8.8e-09 Score=93.56 Aligned_cols=102 Identities=28% Similarity=0.440 Sum_probs=36.1
Q ss_pred cccCCCcccEEEcCCCCccccCcccc-CCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhh-cCcCCc
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAKL 225 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L 225 (815)
.+.+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..++..+ ..+++|
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 3456667999999999999884 565 6899999999999999985 6888999999999999 888887666 469999
Q ss_pred ceeeccCCCccccccc--cccccccccccc
Q 044882 226 HHLKNSNTKSLEEMPV--GIGRLTSLQTLC 253 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~--~i~~L~~L~~L~ 253 (815)
++|++++|+ +..+.. .++.+++|+.|+
T Consensus 91 ~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 91 QELYLSNNK-ISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE
T ss_pred CEEECcCCc-CCChHHhHHHHcCCCcceee
Confidence 999999998 555432 244555555553
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.6e-09 Score=107.65 Aligned_cols=210 Identities=17% Similarity=0.102 Sum_probs=123.6
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc--cccCCCCCCceEEeccCCCcccc
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR--SGLHNLRQLQEISIRRCGNLVSF 613 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~ 613 (815)
.++.+|+++.+.+|+- ...+.. -....|++++.|+++.|-+....+ .....+|+|+.|+|+.|....-.
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~--------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~ 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIE--------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI 188 (505)
T ss_pred hhHHhhhheeecCccc-cccchh--------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence 4566667777766632 111110 123457777788887776654332 23456889999999988643222
Q ss_pred cC-CCCCCCCcceEEeccccccc-ccccccCCCCCcCcEEecCCCCCCCC-CCCCCCCCCceEEEcCCcchhhhhhhcCc
Q 044882 614 PE-GGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSLQELTIGRGVELPSL-KEDGLPTNLQSLTIEGNMEIWKSMIERGR 690 (815)
Q Consensus 614 ~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 690 (815)
.. .-..+++|+.|.|+.|.+.. .+-.....+|+|+.|++++|..+... .....+..|++|+|++|+.+..... .
T Consensus 189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~---~ 265 (505)
T KOG3207|consen 189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG---Y 265 (505)
T ss_pred cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc---c
Confidence 11 12246789999999998753 22233557899999999998533221 1224667899999999887653321 3
Q ss_pred CcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc--cCCCCCCCCeeeeC
Q 044882 691 GFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS--SIVDLQNLASLYLG 762 (815)
Q Consensus 691 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~ 762 (815)
....++.|+.|.++. ..+.++.... .........+++|++|++.. |.+...+. .+..+++|+.|.+.
T Consensus 266 ~~~~l~~L~~Lnls~--tgi~si~~~d--~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSS--TGIASIAEPD--VESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccccchhhhhccc--cCcchhcCCC--ccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcc
Confidence 566788888888887 3333332210 11111224567777777777 44444432 44455666666654
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=8.9e-10 Score=112.84 Aligned_cols=196 Identities=26% Similarity=0.251 Sum_probs=147.9
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+..-...||+.|++..+|..++.+..|+.|.|++|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-
T Consensus 72 ~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 345556788999999999999999999999999999999999999999999999999999 8999999998774 89999
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|+ ++.+|.+++.+..|..|+...... ......+.++..|+.|.++
T Consensus 150 ~sNNk-l~~lp~~ig~~~tl~~ld~s~nei-------------------------------~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 150 VSNNK-LTSLPEEIGLLPTLAHLDVSKNEI-------------------------------QSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred EecCc-cccCCcccccchhHHHhhhhhhhh-------------------------------hhchHHhhhHHHHHHHHHh
Confidence 99998 999999999888888775322211 1112223444455555554
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCC---CCCCCCc
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPS---VGQLPSL 386 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~---l~~l~~L 386 (815)
.|.. ...++.+. .-.|.+|+++.|++..+|..|. .++.|++|.|.+|.+...... -|..---
T Consensus 198 Rn~l------------~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 198 RNHL------------EDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred hhhh------------hhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCCCCChHHHHhccceeee
Confidence 4432 22333344 3368899999999999999887 589999999999986643322 2444445
Q ss_pred CeeeeccC
Q 044882 387 KHLAVCGM 394 (815)
Q Consensus 387 ~~L~l~~~ 394 (815)
|+|++.-|
T Consensus 263 KyL~~qA~ 270 (722)
T KOG0532|consen 263 KYLSTQAC 270 (722)
T ss_pred eeecchhc
Confidence 77777666
No 33
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.67 E-value=1.3e-07 Score=96.59 Aligned_cols=163 Identities=25% Similarity=0.413 Sum_probs=101.6
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEE
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLT 674 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 674 (815)
.+.+++.|++++| .++.+|. + .++|++|.+++|..+..+|+.+ .++|++|++++|..+..+ +++|+.|+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEE
Confidence 3567778888877 4666662 1 2368888888887777777654 257888888888666543 35688888
Q ss_pred EcCCcchhhhhhhcCcCcccC-CCccEEEEeccCCC-cccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCC
Q 044882 675 IEGNMEIWKSMIERGRGFHRF-SSLRQLTIINCDDD-MVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVD 752 (815)
Q Consensus 675 l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 752 (815)
++++... .+..+ ++|+.|.+.+.+.. ...++. ..|++|+.|++++|..+. +|..+.
T Consensus 119 L~~n~~~---------~L~~LPssLk~L~I~~~n~~~~~~lp~-----------~LPsSLk~L~Is~c~~i~-LP~~LP- 176 (426)
T PRK15386 119 IKGSATD---------SIKNVPNGLTSLSINSYNPENQARIDN-----------LISPSLKTLSLTGCSNII-LPEKLP- 176 (426)
T ss_pred eCCCCCc---------ccccCcchHhheecccccccccccccc-----------ccCCcccEEEecCCCccc-Cccccc-
Confidence 7654321 12233 36777777541111 111111 356789999999887553 444444
Q ss_pred CCCCCeeeeCCCCCC-cccCCCCCCCccceeeecCCcchHH
Q 044882 753 LQNLASLYLGDCPKL-KYFPEKGLPSSLLQLDIWGCPLIEE 792 (815)
Q Consensus 753 l~~L~~L~i~~c~~l-~~l~~~~~~~~L~~L~i~~c~~l~~ 792 (815)
.+|+.|+++.+... -.++...+|+++ .|++.+|.++..
T Consensus 177 -~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 177 -ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred -ccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence 68888988764311 134455677788 888888866544
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=8.8e-09 Score=97.00 Aligned_cols=81 Identities=28% Similarity=0.279 Sum_probs=36.9
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
.+.|+.+||++|.|+.+.++..-++.+|+|++++|.|..+- .+..|++|+.|||++| .+..+...=.+|-+.+.|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehh
Confidence 34444555555555544444444445555555555544442 2444445555555544 333333222334444444444
Q ss_pred CCC
Q 044882 232 NTK 234 (815)
Q Consensus 232 ~~~ 234 (815)
+|.
T Consensus 361 ~N~ 363 (490)
T KOG1259|consen 361 QNK 363 (490)
T ss_pred hhh
Confidence 443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.60 E-value=4e-08 Score=73.01 Aligned_cols=57 Identities=30% Similarity=0.510 Sum_probs=39.9
Q ss_pred CcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCC
Q 044882 153 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDC 209 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 209 (815)
++|++|++++|+++.+| +.|..+++|++|++++|.++.+| ..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35677777777777775 45677777777777777777665 46677777777777766
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=4.7e-08 Score=105.12 Aligned_cols=125 Identities=26% Similarity=0.366 Sum_probs=102.0
Q ss_pred cccCCCceEEccccCCcCcCCCccccccccccCCC-cccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 119 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 119 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
....+.+..|.+..+. ...+++....+. +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+.
T Consensus 112 ~~~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~ 184 (394)
T COG4886 112 LLELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN 184 (394)
T ss_pred hhcccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence 3345667777666543 134444556664 99999999999999998999999999999999999999998889
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+.+|+.|++++| .+..+|..++.+..|++|.+++|. ....+..+.++.++..+
T Consensus 185 ~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 185 LSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 999999999999 899999988888889999999996 45555566666666555
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6.1e-09 Score=103.55 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=105.2
Q ss_pred cCCCcceeeeccCccccc----CCCCCCCCccEEEEecccCc-----cccCCCCCCcceEEeCCCCccccccccCCCCCC
Q 044882 441 GFPKLRELHILRCSKLKG----TFPEHLPALEMLVIEGCEEL-----LVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQ 511 (815)
Q Consensus 441 ~~~~L~~L~l~~c~~l~~----~lp~~l~~L~~L~l~~~~~l-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 511 (815)
.+.+|+.+.+.+|+ +.. ...+.+++++.|+++++-.. ......+|+|+.|+++.+..
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl------------- 184 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL------------- 184 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc-------------
Confidence 67888888888864 221 12245777777777765311 12223455555555544432
Q ss_pred ccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccc
Q 044882 512 NSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRS 591 (815)
Q Consensus 512 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~ 591 (815)
..-...... ..+++|+.|.++.|..- .-....+ +..||+|++|+++.|........
T Consensus 185 --------------~~~~~s~~~-~~l~~lK~L~l~~CGls-~k~V~~~--------~~~fPsl~~L~L~~N~~~~~~~~ 240 (505)
T KOG3207|consen 185 --------------SNFISSNTT-LLLSHLKQLVLNSCGLS-WKDVQWI--------LLTFPSLEVLYLEANEIILIKAT 240 (505)
T ss_pred --------------cCCccccch-hhhhhhheEEeccCCCC-HHHHHHH--------HHhCCcHHHhhhhcccccceecc
Confidence 211111111 34556666666666321 1000000 22456666666666643222222
Q ss_pred ccCCCCCCceEEeccCCCccccc--CCCCCCCCcceEEecccccccc-cccc-----cCCCCCcCcEEecCCCC--CCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFP--EGGLPCAKLTRLEISSCKRLEA-LPKG-----LHNLTSLQELTIGRGVE--LPSL 661 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~-----~~~l~~L~~L~l~~~~~--~~~~ 661 (815)
....+..|+.|+|++|+... ++ .....++.|+.|+++.|.+... .|+. ...+++|++|++..|+. ...+
T Consensus 241 ~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 241 STKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred hhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 33446677777777776433 33 2455577777777777765432 2222 34677788888877743 2333
Q ss_pred CCCCCCCCCceEEEcCCcc
Q 044882 662 KEDGLPTNLQSLTIEGNME 680 (815)
Q Consensus 662 ~~~~~~~~L~~L~l~~~~~ 680 (815)
.....+++|+.|.+..|+.
T Consensus 320 ~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYL 338 (505)
T ss_pred chhhccchhhhhhcccccc
Confidence 2334556677777666654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=3.8e-07 Score=102.62 Aligned_cols=93 Identities=25% Similarity=0.364 Sum_probs=84.1
Q ss_pred cccEEEcCCCCcc-ccCccccCCccCCEEecCCCCCC-ccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 154 RLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 154 ~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
.++.|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999988 67999999999999999999997 889999999999999999996556899999999999999999
Q ss_pred CCCcccccccccccc
Q 044882 232 NTKSLEEMPVGIGRL 246 (815)
Q Consensus 232 ~~~~l~~~p~~i~~L 246 (815)
+|...+.+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 999777899887653
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.43 E-value=3e-07 Score=103.39 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=63.6
Q ss_pred cCCEEecCCCCCC-ccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccce
Q 044882 177 YLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNF 255 (815)
Q Consensus 177 ~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 255 (815)
.++.|+|++|.+. .+|..++++++|++|+|++|.....+|..++.+++|+.|++++|...+.+|..++++++|+.|+..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887 778888888888888888884445788888888888888888888666788888888888888543
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.36 E-value=7.4e-07 Score=66.12 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.8
Q ss_pred CCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCC
Q 044882 597 RQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGV 656 (815)
Q Consensus 597 ~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 656 (815)
|+|++|++++|. +..+| ..+..+++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456777777774 33444 456667777777777777665555667777777777777773
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=1.2e-07 Score=89.63 Aligned_cols=123 Identities=25% Similarity=0.256 Sum_probs=97.5
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCC
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYN 200 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 200 (815)
.+..|..+.+..+. ...+..+..-.+.+|+|++++|+|..+. .+..|++|+.|||++|.+.++-.+-.+|-|
T Consensus 282 TWq~LtelDLS~N~-------I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-------ITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred hHhhhhhccccccc-------hhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcC
Confidence 34455556555432 1334455566789999999999998874 488999999999999999988777789999
Q ss_pred CcEEeccCCccccccchhhcCcCCcceeeccCCCcccccc--cccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMP--VGIGRLTSLQTLCN 254 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~ 254 (815)
.++|.|++| .+..+. ++++|.+|..||+++|+ ++.+. .+||+|+.|+++..
T Consensus 354 IKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 354 IKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred Eeeeehhhh-hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence 999999998 777775 48999999999999998 66654 45999999998853
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.34 E-value=2e-06 Score=88.13 Aligned_cols=137 Identities=30% Similarity=0.397 Sum_probs=96.7
Q ss_pred CCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCc
Q 044882 619 PCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSL 698 (815)
Q Consensus 619 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 698 (815)
.+.+++.|++++|. +..+|. -.++|++|++++|..++.+|. ..+++|++|++++|..+... .++|
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sL----------P~sL 114 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGL----------PESV 114 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccc----------cccc
Confidence 35789999999995 566662 234799999999999888775 35689999999999655411 2468
Q ss_pred cEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCC--ccccccCCCCCCCCeeeeCCCCCCcccCCCCCC
Q 044882 699 RQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL--ERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLP 776 (815)
Q Consensus 699 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l--~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 776 (815)
+.|++.+ +....++. .|++|+.|.+.+++.. ..+|..+ -++|++|+|++|..+. +| .++|
T Consensus 115 e~L~L~~--n~~~~L~~------------LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP-~~LP 176 (426)
T PRK15386 115 RSLEIKG--SATDSIKN------------VPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LP-EKLP 176 (426)
T ss_pred ceEEeCC--CCCccccc------------CcchHhheecccccccccccccccc--CCcccEEEecCCCccc-Cc-cccc
Confidence 8888865 44434433 5678999998654322 1222111 1689999999998653 44 3588
Q ss_pred CccceeeecCCc
Q 044882 777 SSLLQLDIWGCP 788 (815)
Q Consensus 777 ~~L~~L~i~~c~ 788 (815)
.+|+.|+++.+.
T Consensus 177 ~SLk~L~ls~n~ 188 (426)
T PRK15386 177 ESLQSITLHIEQ 188 (426)
T ss_pred ccCcEEEecccc
Confidence 999999998753
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.5e-09 Score=98.38 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=93.3
Q ss_pred ccccccccccccccC-cccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccc--cccCCCCCcCcE
Q 044882 574 NIRTLTVEEGIQSSS-SRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALP--KGLHNLTSLQEL 650 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 650 (815)
.++.+|+|...++.. .-..++.+.+|+.|.|.++.....+...++.-.+|+.|+++.|...+... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555444321 12234556777777777776665555556656677777777776544321 124567777777
Q ss_pred EecCCCCCCCCCCC---CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCC
Q 044882 651 TIGRGVELPSLKED---GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALP 727 (815)
Q Consensus 651 ~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 727 (815)
+++.|...+..-.. .--++|+.|+++|+...-.. +.+..+ ..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-----------------------sh~~tL------------~~ 310 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-----------------------SHLSTL------------VR 310 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh-----------------------hHHHHH------------HH
Confidence 77777433322111 12345666666665421100 000111 12
Q ss_pred CCCccceEEecCCCCCcc-ccccCCCCCCCCeeeeCCCCCCc--ccCCCCCCCccceeeecCC
Q 044882 728 LPASLTSLWISGFPNLER-LSSSIVDLQNLASLYLGDCPKLK--YFPEKGLPSSLLQLDIWGC 787 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~i~~c~~l~--~l~~~~~~~~L~~L~i~~c 787 (815)
..++|..|||+.|..++. ....+..|+.|++|.++.|..|- .+-...-.++|..|++.||
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 345666666666655544 22245566667777777665442 1111223356677776665
No 44
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.25 E-value=5.1e-08 Score=94.45 Aligned_cols=242 Identities=17% Similarity=0.225 Sum_probs=124.8
Q ss_pred cccceEEEeccCCcccCchhhhc---CCCCCcceEEEeccCCchhhhccccccccceE--eccccccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMC---GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNL--LIHKCDNIRTLTVEEGIQSS 587 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~---~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l--~l~~~~~L~~l~ls~n~~~~ 587 (815)
..++.+++++|..-...... .+ .+.++|+.-++++- .+..+...+|..|+.| .+.+|++|+.+++|+|.+..
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~-i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARA-IAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred CceEEEeccCCchhHHHHHH-HHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 45777777777633222111 11 33345555555433 1111122333344433 25578888888888888765
Q ss_pred Ccccc----cCCCCCCceEEeccCCCcccc-------------cCCCCCCCCcceEEeccccccc----ccccccCCCCC
Q 044882 588 SSRSG----LHNLRQLQEISIRRCGNLVSF-------------PEGGLPCAKLTRLEISSCKRLE----ALPKGLHNLTS 646 (815)
Q Consensus 588 ~~~~~----~~~l~~L~~L~l~~~~~l~~~-------------~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~ 646 (815)
..+.. +.++..|++|.+.+|..-..- ..-...-+.|+++...+|+.-. .+...++..+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 44333 345788888888888632111 1112234678888887776432 12234566677
Q ss_pred cCcEEecCCCCCCCCCC------CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccc
Q 044882 647 LQELTIGRGVELPSLKE------DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDK 720 (815)
Q Consensus 647 L~~L~l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 720 (815)
|+.+.++.|. +..-.. ...+++|+.|++.+|-............+..+++|++|++++| ..-..-.. ...+
T Consensus 187 leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~-a~~~ 263 (382)
T KOG1909|consen 187 LEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAI-AFVD 263 (382)
T ss_pred cceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHH-HHHH
Confidence 8888887773 221111 1256777777777775544333222234556667777777774 21111000 0000
Q ss_pred ccccCCCCCCccceEEecCCCCCcc-----ccccCCCCCCCCeeeeCCC
Q 044882 721 RLGTALPLPASLTSLWISGFPNLER-----LSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 721 ~l~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~i~~c 764 (815)
.+ -...|+|+.|.+.+| .++. +...+...|.|++|++++|
T Consensus 264 al---~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 264 AL---KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HH---hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 00 013456666666663 3322 2223444666666666664
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1e-06 Score=59.42 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=15.5
Q ss_pred cCCEEecCCCCCCccchhhhccCCCcEEeccCC
Q 044882 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDC 209 (815)
Q Consensus 177 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~ 209 (815)
+|++|++++|+|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344555555555555444455555555555554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.5e-08 Score=93.08 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred cCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCC--CCCCCCccEEEEecCCCC
Q 044882 297 LDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFG--DSSFSNLVTLEFENCDMC 374 (815)
Q Consensus 297 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~ 374 (815)
+..++.|.+|+++|+..+... ....... ..++|++|+++|+.-.-.-..+. ...+++|.+|+|++|...
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~-------Vtv~V~h--ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEK-------VTVAVAH--ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred HHhhhhHhhcCchHhhccchh-------hhHHHhh--hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 566778888888888762111 1111111 23578888888864321111000 014788888888887765
Q ss_pred CC--CCCCCCCCCcCeeeeccCCC
Q 044882 375 TA--LPSVGQLPSLKHLAVCGMSR 396 (815)
Q Consensus 375 ~~--l~~l~~l~~L~~L~l~~~~~ 396 (815)
.. ...+.+++.|++|.++.|..
T Consensus 327 ~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 327 KNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred CchHHHHHHhcchheeeehhhhcC
Confidence 43 22567788888888888854
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=4.9e-07 Score=97.18 Aligned_cols=105 Identities=27% Similarity=0.329 Sum_probs=83.1
Q ss_pred cccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 225 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 225 (815)
...+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++.+| .+..++. +..+++|
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L 164 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDISG-LESLKSL 164 (414)
T ss_pred hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhccC-Cccchhh
Confidence 3446788899999999999988866588899999999999999988 56788888999999998 7777655 6778999
Q ss_pred ceeeccCCCcccccccc-cccccccccccc
Q 044882 226 HHLKNSNTKSLEEMPVG-IGRLTSLQTLCN 254 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 254 (815)
+.+++++|. +..+... ...+.+++.+..
T Consensus 165 ~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 165 KLLDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred hcccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 999999988 5555443 456666666643
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=1.7e-06 Score=58.32 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=29.9
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP 192 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp 192 (815)
++|++|++++|+|+.+|..+++|++|++|++++|.|+++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4678888888888888777888888888888888877664
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=3.7e-07 Score=75.95 Aligned_cols=104 Identities=27% Similarity=0.262 Sum_probs=82.1
Q ss_pred ccCCCcccEEEcCCCCccccCccc-cCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcce
Q 044882 149 LFKLQRLRAFSLRGYHIFELPDSI-GDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~lp~~~-~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 227 (815)
+.+..+|...+|++|.+..+|..| .+++.++.|+|++|+|.++|..+..++.|+.|+++.| .+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHH
Confidence 356677888899999999998877 4556899999999999999988999999999999998 78888888888999999
Q ss_pred eeccCCCcccccccc--cccccccccccc
Q 044882 228 LKNSNTKSLEEMPVG--IGRLTSLQTLCN 254 (815)
Q Consensus 228 L~l~~~~~l~~~p~~--i~~L~~L~~L~~ 254 (815)
|+..++. ...+|.. .+.+..|..+++
T Consensus 128 Lds~~na-~~eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 128 LDSPENA-RAEIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hcCCCCc-cccCcHHHhccccHHHHHhcC
Confidence 9888887 6666655 233444444433
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.11 E-value=2.3e-07 Score=90.04 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=143.1
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccc---cccccCc-------ccccCCCCCCceEEec
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE---GIQSSSS-------RSGLHNLRQLQEISIR 605 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~---n~~~~~~-------~~~~~~l~~L~~L~l~ 605 (815)
..+.++++++++++..-+..... +...| ..-++|+..++|+ .+....+ ...+..+|.|++|+||
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~-i~~~L-----~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARA-IAKVL-----ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred cccCceEEEeccCCchhHHHHHH-HHHHH-----hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 57889999999999654433211 11011 1112333333321 1111112 2245567899999999
Q ss_pred cCCCcccccCC----CCCCCCcceEEeccccccccc-------------ccccCCCCCcCcEEecCCCCCCCCCCC----
Q 044882 606 RCGNLVSFPEG----GLPCAKLTRLEISSCKRLEAL-------------PKGLHNLTSLQELTIGRGVELPSLKED---- 664 (815)
Q Consensus 606 ~~~~l~~~~~~----~~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 664 (815)
+|..-...+.. +..+.+|++|.+.+|.+...- ..-...-+.|+++...+| .+...+..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~ 179 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAE 179 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHH
Confidence 99754333332 334789999999999753211 112345678999999988 44433321
Q ss_pred --CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCC
Q 044882 665 --GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPN 742 (815)
Q Consensus 665 --~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 742 (815)
...++|+.+.+..|............++..++.|+.|++.+ |..+.-.. ..+..++...++|++|++++|..
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D--Ntft~egs----~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD--NTFTLEGS----VALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc--chhhhHHH----HHHHHHhcccchheeeccccccc
Confidence 24578999999988654433322225688899999999988 44433222 23334556778999999999854
Q ss_pred Ccc----ccc-cCCCCCCCCeeeeCCCCCCcccCC------CCCCCccceeeecCCcc
Q 044882 743 LER----LSS-SIVDLQNLASLYLGDCPKLKYFPE------KGLPSSLLQLDIWGCPL 789 (815)
Q Consensus 743 l~~----l~~-~~~~l~~L~~L~i~~c~~l~~l~~------~~~~~~L~~L~i~~c~~ 789 (815)
-.. +.. .-...|+|+.|++.+| .+++=.. ..--+.|++|++++|.-
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 432 211 2234789999999885 4432111 11137899999988754
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=5.5e-07 Score=96.80 Aligned_cols=99 Identities=26% Similarity=0.385 Sum_probs=80.8
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
.+..++.+.++.|.+..+-..++.+++|++|++.+|.|..+...+..+++|++|++++| .+..+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc-hhhccchhhhee
Confidence 56667777788888888656688999999999999999998766899999999999999 7877765 888899999999
Q ss_pred cCCCccccccccccccccccccc
Q 044882 231 SNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
.+|. +..+. ++..+++|+.++
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccCc-chhcc-CCccchhhhccc
Confidence 9998 55543 455566666664
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=7.8e-07 Score=74.11 Aligned_cols=99 Identities=18% Similarity=0.280 Sum_probs=84.5
Q ss_pred CcccEEEcCCCCccccCcc---ccCCccCCEEecCCCCCCccchhhh-ccCCCcEEeccCCccccccchhhcCcCCccee
Q 044882 153 QRLRAFSLRGYHIFELPDS---IGDLRYLRYLNLSGTEIRTLPESVN-KLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 228 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~---~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 228 (815)
+.+..++|+.|.+..+++. +.+..+|...+|++|.++++|..+. +.+.+.+|++.+| .+..+|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 3466788899988766654 4667888899999999999998885 5568999999999 899999999999999999
Q ss_pred eccCCCccccccccccccccccccc
Q 044882 229 KNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 229 ~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
+++.|. +...|.-+..|.++-.|+
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhc
Confidence 999998 788888888888887774
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.84 E-value=3.1e-07 Score=97.31 Aligned_cols=126 Identities=24% Similarity=0.223 Sum_probs=85.5
Q ss_pred CCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCC--CCCCCceE
Q 044882 596 LRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG--LPTNLQSL 673 (815)
Q Consensus 596 l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L 673 (815)
+..|.+.+.++|. +..+...+.-++.|+.|++++|++...- .+..++.|++|||+.| .++.+|..+ .+ .|+.|
T Consensus 163 Wn~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L 237 (1096)
T KOG1859|consen 163 WNKLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLL 237 (1096)
T ss_pred hhhHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hheee
Confidence 3456666777665 5555556666778888888888865543 6778888888888888 666666553 33 38888
Q ss_pred EEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCC
Q 044882 674 TIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFP 741 (815)
Q Consensus 674 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 741 (815)
.+++|...+- .++.+|.+|+.|++++ |.+....+. ..+..+.+|+.|+|.|+|
T Consensus 238 ~lrnN~l~tL------~gie~LksL~~LDlsy--Nll~~hseL-------~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTL------RGIENLKSLYGLDLSY--NLLSEHSEL-------EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhh------hhHHhhhhhhccchhH--hhhhcchhh-------hHHHHHHHHHHHhhcCCc
Confidence 8888864331 4677888888888888 555544331 122456788888888864
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.73 E-value=1.8e-06 Score=80.67 Aligned_cols=91 Identities=26% Similarity=0.271 Sum_probs=63.9
Q ss_pred ccCCCcccEEEcCCCCcc-----ccCccccCCccCCEEecCCCCCC----ccc-------hhhhccCCCcEEeccCCccc
Q 044882 149 LFKLQRLRAFSLRGYHIF-----ELPDSIGDLRYLRYLNLSGTEIR----TLP-------ESVNKLYNLHSLLLEDCDRL 212 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~l 212 (815)
+..+..+..++||||.|. .+-..|.+-++|++.+++.-... ++| ..+-++++|+..+|++|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345777889999999876 23455667788999998853211 333 44567799999999998443
Q ss_pred cccchh----hcCcCCcceeeccCCCcccccc
Q 044882 213 KKLCAD----MGNLAKLHHLKNSNTKSLEEMP 240 (815)
Q Consensus 213 ~~lp~~----i~~L~~L~~L~l~~~~~l~~~p 240 (815)
.+.|.. |++-+.|.||.+++|. ++.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 444443 5677899999999987 55443
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.69 E-value=2.5e-06 Score=94.97 Aligned_cols=244 Identities=24% Similarity=0.375 Sum_probs=114.9
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEecc-CCchhhhccccccccceEecccccccccccccccc-cccCccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQC-HSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI-QSSSSRS 591 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~-~~~~~~~ 591 (815)
.|+.+.+.+|..+............++|++|++++| ......+.. .......|++|+.++++... +++..-.
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL------LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH------hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 444444444444443221112245666666666653 221111100 00022334445555444433 2222222
Q ss_pred ccC-CCCCCceEEeccCCCcc--cccCCCCCCCCcceEEecccccccc--cccccCCCCCcCcEEecCCCCCCCCCCCCC
Q 044882 592 GLH-NLRQLQEISIRRCGNLV--SFPEGGLPCAKLTRLEISSCKRLEA--LPKGLHNLTSLQELTIGRGVELPSLKEDGL 666 (815)
Q Consensus 592 ~~~-~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 666 (815)
.+. .+++|++|.+.+|..++ .+-.....+++|++|++++|...+. +.....++++|+.|.+..+..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------- 333 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------
Confidence 222 26677777777676422 1222233466777777777765421 222233455555544433321
Q ss_pred CCCCceEEEcCCcchh-hhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccc-eEEecCCCCC-
Q 044882 667 PTNLQSLTIEGNMEIW-KSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLT-SLWISGFPNL- 743 (815)
Q Consensus 667 ~~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~c~~l- 743 (815)
+..++.+.+.++.... ..... ..+..++.++.+.+..| . . .... .+.+.+|+.+
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~--~~~~~~~~l~~~~l~~~-~-~-------------------~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAE--LILRSCPKLTDLSLSYC-G-I-------------------SDLGLELSLRGCPNLT 390 (482)
T ss_pred CccHHHHHHHHhhccCchhHhH--HHHhcCCCcchhhhhhh-h-c-------------------cCcchHHHhcCCcccc
Confidence 2333344433332221 01111 23455666666666662 1 1 1111 4666777777
Q ss_pred ccccccCCCCCCCCeeeeCCCCCCcccCCC--CC-CCccceeeecCCcchHHHHh
Q 044882 744 ERLSSSIVDLQNLASLYLGDCPKLKYFPEK--GL-PSSLLQLDIWGCPLIEEKCR 795 (815)
Q Consensus 744 ~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~-~~~L~~L~i~~c~~l~~~~~ 795 (815)
..+......+..++.|+++.|...+.-.-. .. ..+++.+++.+|+.+.....
T Consensus 391 ~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 391 ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 444433344444888888888765543221 11 45678888888887766544
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=7.3e-06 Score=87.26 Aligned_cols=83 Identities=27% Similarity=0.285 Sum_probs=59.8
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccchhhcCcCCcc
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLH 226 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 226 (815)
++.-++.|+.|+|++|+++... .+..+.+|++|||++|.+..+|. +.... +|+.|++++| .++++-. |.+|++|+
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~g-ie~LksL~ 257 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLRG-IENLKSLY 257 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhhh-HHhhhhhh
Confidence 3455677888888888877663 67778888888888888877773 22233 3888888887 6666643 77888888
Q ss_pred eeeccCCC
Q 044882 227 HLKNSNTK 234 (815)
Q Consensus 227 ~L~l~~~~ 234 (815)
.||+++|-
T Consensus 258 ~LDlsyNl 265 (1096)
T KOG1859|consen 258 GLDLSYNL 265 (1096)
T ss_pred ccchhHhh
Confidence 88888875
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=9e-05 Score=83.27 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=54.6
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc--hhhhcc
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP--ESVNKL 198 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L 198 (815)
.+|.||+|.+.+-. .....+..-..++++|+.||+|+++++.+ .++++|++|++|.+.+-.+..-. ..+.+|
T Consensus 146 ~LPsL~sL~i~~~~-----~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQ-----FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCce-----ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 45666666554422 01112222235566666666666666655 55666666666666655554322 445566
Q ss_pred CCCcEEeccCCccccc--cc----hhhcCcCCcceeeccCCC
Q 044882 199 YNLHSLLLEDCDRLKK--LC----ADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 199 ~~L~~L~L~~~~~l~~--lp----~~i~~L~~L~~L~l~~~~ 234 (815)
++|++||++....... +. +.-..|++||.||.+++.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 6666666665422111 01 011235666666666554
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.00013 Score=69.60 Aligned_cols=189 Identities=14% Similarity=0.142 Sum_probs=112.9
Q ss_pred cccccccccccccccccC--cccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc-ccccccCCCCCc
Q 044882 571 KCDNIRTLTVEEGIQSSS--SRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSL 647 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L 647 (815)
.|..++.+++..|.++.. +...+.++|.|+.|+|+.|+....+...-.++.+|++|-+.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 355666666666666542 23346779999999999887554443322567899999998866432 223346688888
Q ss_pred CcEEecCCCCCCCCCC-----CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcccccc
Q 044882 648 QELTIGRGVELPSLKE-----DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRL 722 (815)
Q Consensus 648 ~~L~l~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 722 (815)
+.|+++.|. .+.+-. ...-+.++.|+.-.|......-.- ..-..+|++..+-+.. .-+.......
T Consensus 149 telHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e--~PlK~~s~ek----- 218 (418)
T KOG2982|consen 149 TELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCE--GPLKTESSEK----- 218 (418)
T ss_pred hhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeec--Ccccchhhcc-----
Confidence 999998883 221111 123346777777777543321111 2223467777777776 2333333211
Q ss_pred ccCCCCCCccceEEecCCCCCccccc--cCCCCCCCCeeeeCCCCCCcccCC
Q 044882 723 GTALPLPASLTSLWISGFPNLERLSS--SIVDLQNLASLYLGDCPKLKYFPE 772 (815)
Q Consensus 723 ~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~i~~c~~l~~l~~ 772 (815)
.+..++.+-.|+|+. +++.+... .+..|++|..|.+++.|-...+..
T Consensus 219 --~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 219 --GSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred --cCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 112345666777777 56655433 677788888888888776665543
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=9.6e-05 Score=70.44 Aligned_cols=85 Identities=22% Similarity=0.287 Sum_probs=48.4
Q ss_pred cCCCcccEEEcCCCCccc---cCccccCCccCCEEecCCCCCCccchhh-hccCCCcEEeccCCcc-ccccchhhcCcCC
Q 044882 150 FKLQRLRAFSLRGYHIFE---LPDSIGDLRYLRYLNLSGTEIRTLPESV-NKLYNLHSLLLEDCDR-LKKLCADMGNLAK 224 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~---lp~~~~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~~ 224 (815)
...++++.|||.+|.|+. +-.-+.+|++|++|+|++|.+..--.+. ..+.+|++|-|.++.- .......+..+++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 456667777777777663 2223466777777777777654211222 3455677777766521 1233344556666
Q ss_pred cceeeccCCC
Q 044882 225 LHHLKNSNTK 234 (815)
Q Consensus 225 L~~L~l~~~~ 234 (815)
++.|+++.|.
T Consensus 148 vtelHmS~N~ 157 (418)
T KOG2982|consen 148 VTELHMSDNS 157 (418)
T ss_pred hhhhhhccch
Confidence 6777666663
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=6.4e-05 Score=84.44 Aligned_cols=107 Identities=25% Similarity=0.316 Sum_probs=80.8
Q ss_pred cCCCceEEccccCCcCcCCCccccccccc-cCCCcccEEEcCCCCcc--ccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKL-FKLQRLRAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.-.+|+.|.+.+... ++...+..+ ..+|.||.|.+++-.+. ++-.-..++++|+.||+|+++|+.+ ..+++
T Consensus 120 sr~nL~~LdI~G~~~-----~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~ 193 (699)
T KOG3665|consen 120 SRQNLQHLDISGSEL-----FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR 193 (699)
T ss_pred HHHhhhhcCccccch-----hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence 345788887766432 334555566 67899999999987654 3334457889999999999999998 88999
Q ss_pred cCCCcEEeccCCccccccc--hhhcCcCCcceeeccCCC
Q 044882 198 LYNLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 234 (815)
|++||+|.+++= .+..-+ ..+.+|++|++||+|..+
T Consensus 194 LknLq~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 194 LKNLQVLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cccHHHHhccCC-CCCchhhHHHHhcccCCCeeeccccc
Confidence 999999999864 333222 347789999999999876
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.99 E-value=0.0011 Score=59.87 Aligned_cols=98 Identities=23% Similarity=0.270 Sum_probs=48.6
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhh-ccCCCcEEeccCCccccccch--hhcCcCCcceeecc
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVN-KLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNS 231 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~ 231 (815)
...+||++|.+..++ .|..+..|.+|.+.+|.|+.+-..++ .+++|+.|.|.+| .+.++-+ .+..+++|+.|.+-
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeec
Confidence 345555555555442 24455556666666665555543343 3345666666555 4443321 14455566666655
Q ss_pred CCCcccccc----cccccccccccccce
Q 044882 232 NTKSLEEMP----VGIGRLTSLQTLCNF 255 (815)
Q Consensus 232 ~~~~l~~~p----~~i~~L~~L~~L~~~ 255 (815)
+|. ...-+ .-+.++++|++|+..
T Consensus 122 ~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 122 GNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred CCc-hhcccCceeEEEEecCcceEeehh
Confidence 554 22221 114556666666543
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.97 E-value=0.0011 Score=59.95 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=69.7
Q ss_pred ccccccccCCCcccEEEcCCCCccccCcccc-CCccCCEEecCCCCCCccc--hhhhccCCCcEEeccCCccccccch--
Q 044882 143 YSILPKLFKLQRLRAFSLRGYHIFELPDSIG-DLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA-- 217 (815)
Q Consensus 143 ~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~-- 217 (815)
....+.|..++.|.+|.|.+|+|+.+...+. -+++|..|.|.+|.|..+- ..+..+++|++|.+-+| .+..-+.
T Consensus 54 l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR 132 (233)
T KOG1644|consen 54 LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYR 132 (233)
T ss_pred hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCce
Confidence 3455677889999999999999998865564 4567999999999988663 45677889999999888 4433322
Q ss_pred --hhcCcCCcceeeccCCC
Q 044882 218 --DMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 218 --~i~~L~~L~~L~l~~~~ 234 (815)
.+.++++|+.||...-.
T Consensus 133 ~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eEEEEecCcceEeehhhhh
Confidence 26889999999987654
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.91 E-value=8.1e-05 Score=82.91 Aligned_cols=164 Identities=23% Similarity=0.370 Sum_probs=74.0
Q ss_pred CCCcceEEeccccccc-cccccc-CCCCCcCcEEecCCCCCCCCC--C-CCCCCCCceEEEcCCcchhhhhhhcCcCccc
Q 044882 620 CAKLTRLEISSCKRLE-ALPKGL-HNLTSLQELTIGRGVELPSLK--E-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHR 694 (815)
Q Consensus 620 l~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 694 (815)
+++|+.|++++|...+ ..-..+ ..+++|+.|.+.+|..+++.. . ...+++|++|++++|..+...... .....
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~--~~~~~ 319 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE--ALLKN 319 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH--HHHHh
Confidence 3455555555554211 111111 125556666655554432211 0 023455666666666554322111 12334
Q ss_pred CCCccEEEEeccC--CCcccCCCCccccccccCCCCC-CccceEEecCCCCCccccccCCCCCCCC-eeeeCCCCCC-cc
Q 044882 695 FSSLRQLTIINCD--DDMVSFPPKADDKRLGTALPLP-ASLTSLWISGFPNLERLSSSIVDLQNLA-SLYLGDCPKL-KY 769 (815)
Q Consensus 695 l~~L~~L~l~~~~--~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~l~~L~-~L~i~~c~~l-~~ 769 (815)
+++|+.|.+..+. ..++.+.- . ...... ..+..+.+.+|++++.+--......... .+.+.+|+.+ ..
T Consensus 320 c~~l~~l~~~~~~~c~~l~~~~l----~---~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~ 392 (482)
T KOG1947|consen 320 CPNLRELKLLSLNGCPSLTDLSL----S---GLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTES 392 (482)
T ss_pred CcchhhhhhhhcCCCccHHHHHH----H---HhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchH
Confidence 5555555544421 12222211 0 000111 2555666666666655533211123333 5677788877 33
Q ss_pred cCC-CCCCCccceeeecCCcchHH
Q 044882 770 FPE-KGLPSSLLQLDIWGCPLIEE 792 (815)
Q Consensus 770 l~~-~~~~~~L~~L~i~~c~~l~~ 792 (815)
+.. .....+++.|+++.|...+.
T Consensus 393 l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 393 LELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred HHHHhccCCccceEecccCccccc
Confidence 332 11223389999999986654
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=9.8e-05 Score=69.69 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=55.6
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccch--hhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l 230 (815)
.+.+.|++-|+.+..+ ..+.+++.|++|.|+-|+|+.+ ..+..+++|+.|.|+.| .+..+.. -+.+|++|+.|.+
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 3445555555555544 2234556666666666666655 34556666666666665 4443332 1355666666666
Q ss_pred cCCCcccccccc-----cccccccccccceee
Q 044882 231 SNTKSLEEMPVG-----IGRLTSLQTLCNFVV 257 (815)
Q Consensus 231 ~~~~~l~~~p~~-----i~~L~~L~~L~~~~~ 257 (815)
..|...+.-+.. +.-|++|++|++..+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 665544433322 556777777765444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.00097 Score=63.11 Aligned_cols=103 Identities=24% Similarity=0.218 Sum_probs=55.0
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCC--CCC-ccchhhhccCCCcEEeccCCccccc---cchhhcCcCC
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGT--EIR-TLPESVNKLYNLHSLLLEDCDRLKK---LCADMGNLAK 224 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~---lp~~i~~L~~ 224 (815)
.+..|..|++.+..++.+ ..+-.|++|++|.++.| .+. .++...-++++|++|++++| .++. ++. +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP-LKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch-hhhhcc
Confidence 344455555555554443 23445667777777766 433 44444445577777777776 4432 222 455666
Q ss_pred cceeeccCCCccccccc----ccccccccccccceee
Q 044882 225 LHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVV 257 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~ 257 (815)
|..|++.+|.... +-. .+.-+++|..|+...+
T Consensus 118 L~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 6677777665222 211 1445666666654444
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.63 E-value=4.4e-05 Score=71.70 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCCCCCCcceEEeccccccccccc----ccCCCCCcCcEEecCCCCCCCCCCC---------------CCCCCCceEEEc
Q 044882 616 GGLPCAKLTRLEISSCKRLEALPK----GLHNLTSLQELTIGRGVELPSLKED---------------GLPTNLQSLTIE 676 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~~L~~L~l~ 676 (815)
++..||.|+..+++.|.+....|+ .+.+-+.|++|.+++| .+..+... ..-|.|+.....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 344567777777777766554443 2456677777777777 44433221 123456666666
Q ss_pred CCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 677 GNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 677 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
.|..-..+-......++.-..|+++.+..
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~q 194 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQ 194 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeee
Confidence 55432211111001233335566666665
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.35 E-value=0.0012 Score=36.76 Aligned_cols=6 Identities=67% Similarity=1.082 Sum_probs=2.1
Q ss_pred EecCCC
Q 044882 181 LNLSGT 186 (815)
Q Consensus 181 L~L~~~ 186 (815)
|||++|
T Consensus 5 Ldls~n 10 (22)
T PF00560_consen 5 LDLSGN 10 (22)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.27 E-value=0.00031 Score=66.48 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc--hhhhccC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP--ESVNKLY 199 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~ 199 (815)
+.+++.|.+++.. .....-..+|+.|+||.|+-|.|+.+ ..+..+++|+.|.|..|.|..+- ..+.+|+
T Consensus 18 l~~vkKLNcwg~~--------L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCG--------LDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCC--------ccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 4455556555543 11222337899999999999999988 55889999999999999998774 5678999
Q ss_pred CCcEEeccCCccccccch-----hhcCcCCcceee
Q 044882 200 NLHSLLLEDCDRLKKLCA-----DMGNLAKLHHLK 229 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~-----~i~~L~~L~~L~ 229 (815)
+|++|-|..|....+-+. .+.-|++|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999988754443332 256788888887
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.16 E-value=0.0025 Score=35.48 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.7
Q ss_pred cccEEEcCCCCccccCccccCC
Q 044882 154 RLRAFSLRGYHIFELPDSIGDL 175 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~~~~~l 175 (815)
+|++||+++|+++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999887754
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0037 Score=59.30 Aligned_cols=93 Identities=29% Similarity=0.342 Sum_probs=64.5
Q ss_pred ccccCCCcccEEEcCCC--Ccc-ccCccccCCccCCEEecCCCCCCccc--hhhhccCCCcEEeccCCccccccc----h
Q 044882 147 PKLFKLQRLRAFSLRGY--HIF-ELPDSIGDLRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLC----A 217 (815)
Q Consensus 147 ~~~~~l~~Lr~L~L~~~--~i~-~lp~~~~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp----~ 217 (815)
..|..+++|+.|.++.| ++. .++-...++++|++|++++|+|+.+- ..+.++.+|..||+.+|.... +- .
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~ 137 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREK 137 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHH
Confidence 34567888999999999 444 44444456699999999999887531 446778889999999984332 32 2
Q ss_pred hhcCcCCcceeeccCCCccccccc
Q 044882 218 DMGNLAKLHHLKNSNTKSLEEMPV 241 (815)
Q Consensus 218 ~i~~L~~L~~L~l~~~~~l~~~p~ 241 (815)
.+.-+++|.+|+-.... -...|.
T Consensus 138 vf~ll~~L~~LD~~dv~-~~Ea~~ 160 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVD-GEEAPE 160 (260)
T ss_pred HHHHhhhhccccccccC-Cccccc
Confidence 25677899999876655 334443
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.52 E-value=0.00067 Score=62.45 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=71.1
Q ss_pred ccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCccee
Q 044882 149 LFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHL 228 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 228 (815)
+..++..++||++.|++..+-..|+.+..|..|+++.|+|..+|..++.+..++.+++..| .....|.+++++++++.+
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4566778888888888887777788888888888888888888888888888888888877 788888888888888888
Q ss_pred eccCCC
Q 044882 229 KNSNTK 234 (815)
Q Consensus 229 ~l~~~~ 234 (815)
+..++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 888776
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.69 E-value=0.019 Score=29.50 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=3.9
Q ss_pred CCEEecCCCCCCc
Q 044882 178 LRYLNLSGTEIRT 190 (815)
Q Consensus 178 L~~L~L~~~~i~~ 190 (815)
|++|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3334444443333
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.30 E-value=0.027 Score=28.91 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=11.4
Q ss_pred CcccEEEcCCCCccccC
Q 044882 153 QRLRAFSLRGYHIFELP 169 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp 169 (815)
++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 46899999999998876
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.24 E-value=0.092 Score=45.89 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=22.7
Q ss_pred cccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 591 SGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 591 ~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
..|.++++|+.+.+.++ ...++. .+..+++|+.+.+.+ .....-...+..+++|+.+.+..
T Consensus 29 ~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred hhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 34445555555555442 222222 344444555555543 11111222344455555555543
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=0.0089 Score=54.34 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=55.8
Q ss_pred CCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 669 NLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 669 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
.++.++-+++......+ ..+.++++++.|.+.+| ..+.. .++...-+..++|+.|+|++|+.+++---
T Consensus 102 ~IeaVDAsds~I~~eGl----e~L~~l~~i~~l~l~~c-k~~dD-------~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGL----EHLRDLRSIKSLSLANC-KYFDD-------WCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eEEEEecCCchHHHHHH----HHHhccchhhhheeccc-cchhh-------HHHHHhcccccchheeeccCCCeechhHH
Confidence 35555666655444333 34666777777777773 33332 22222223567899999999988877432
Q ss_pred -cCCCCCCCCeeeeCCCCCCcc
Q 044882 749 -SIVDLQNLASLYLGDCPKLKY 769 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~ 769 (815)
.+..+++|+.|.|.+.+.+..
T Consensus 170 ~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHHHHhhhhHHHHhcCchhhhc
Confidence 677888888888887655443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.00 E-value=0.28 Score=42.81 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=4.5
Q ss_pred cCCCCCCceEEec
Q 044882 593 LHNLRQLQEISIR 605 (815)
Q Consensus 593 ~~~l~~L~~L~l~ 605 (815)
|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3444444444444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.68 E-value=0.0054 Score=56.73 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=76.3
Q ss_pred ccccC-ccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCccccccccc
Q 044882 165 IFELP-DSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGI 243 (815)
Q Consensus 165 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 243 (815)
+.++| ..+.....-++||++.|.+..+-..++.++.|..||++.| .+.-+|..++.+..++++++..|. ....|...
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 33455 4566778899999999999888888999999999999998 899999999999999999998887 88999999
Q ss_pred cccccccccc
Q 044882 244 GRLTSLQTLC 253 (815)
Q Consensus 244 ~~L~~L~~L~ 253 (815)
+++++++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999999885
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.16 E-value=0.14 Score=29.83 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=12.5
Q ss_pred CccCCEEecCCCCCCccchh
Q 044882 175 LRYLRYLNLSGTEIRTLPES 194 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp~~ 194 (815)
|.+|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666644
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.16 E-value=0.14 Score=29.83 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=12.5
Q ss_pred CccCCEEecCCCCCCccchh
Q 044882 175 LRYLRYLNLSGTEIRTLPES 194 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp~~ 194 (815)
|.+|++|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 34566666666666666644
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=0.025 Score=51.49 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=49.4
Q ss_pred CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC---CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCC
Q 044882 621 AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE---DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSS 697 (815)
Q Consensus 621 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~ 697 (815)
..++.++-+++.+...--+.+.++++++.|.+.+|..+.+..- .+..++|+.|++++|+.++.... ..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL---~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL---ACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH---HHHHHhhh
Confidence 3566777777766555555567777777788877765543210 12556777777777776653322 13455566
Q ss_pred ccEEEEec
Q 044882 698 LRQLTIIN 705 (815)
Q Consensus 698 L~~L~l~~ 705 (815)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 66666555
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.86 E-value=0.36 Score=28.04 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.9
Q ss_pred CCcccEEEcCCCCccccCccc
Q 044882 152 LQRLRAFSLRGYHIFELPDSI 172 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~ 172 (815)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.86 E-value=0.36 Score=28.04 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.9
Q ss_pred CCcccEEEcCCCCccccCccc
Q 044882 152 LQRLRAFSLRGYHIFELPDSI 172 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~ 172 (815)
+++|++|+|++|+|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467999999999999998653
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.60 E-value=0.56 Score=27.27 Aligned_cols=15 Identities=40% Similarity=0.764 Sum_probs=6.9
Q ss_pred ccceeeecCCcchHH
Q 044882 778 SLLQLDIWGCPLIEE 792 (815)
Q Consensus 778 ~L~~L~i~~c~~l~~ 792 (815)
+|+.|++++|+.+++
T Consensus 3 ~L~~L~l~~C~~itD 17 (26)
T smart00367 3 NLRELDLSGCTNITD 17 (26)
T ss_pred CCCEeCCCCCCCcCH
Confidence 344444444444443
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.92 E-value=1.5 Score=25.40 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=10.8
Q ss_pred cCCEEecCCCCCCccch
Q 044882 177 YLRYLNLSGTEIRTLPE 193 (815)
Q Consensus 177 ~L~~L~L~~~~i~~lp~ 193 (815)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666664
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.36 E-value=1.9 Score=25.02 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=9.7
Q ss_pred ccCCEEecCCCCCCcc
Q 044882 176 RYLRYLNLSGTEIRTL 191 (815)
Q Consensus 176 ~~L~~L~L~~~~i~~l 191 (815)
.+|++|+|++|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.67 E-value=1.3 Score=25.06 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=4.0
Q ss_pred cCCEEecCCCCC
Q 044882 177 YLRYLNLSGTEI 188 (815)
Q Consensus 177 ~L~~L~L~~~~i 188 (815)
+|++|+|++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444433
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=61.78 E-value=0.084 Score=57.10 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.4
Q ss_pred CCCcceEEeccccc
Q 044882 620 CAKLTRLEISSCKR 633 (815)
Q Consensus 620 l~~L~~L~l~~~~~ 633 (815)
...+++++++.|.+
T Consensus 171 ~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 171 NEHLTELDLSLNGL 184 (478)
T ss_pred ccchhHHHHHhccc
Confidence 44555555555554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.55 E-value=8.6 Score=22.77 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=9.2
Q ss_pred ccCCEEecCCCCCC
Q 044882 176 RYLRYLNLSGTEIR 189 (815)
Q Consensus 176 ~~L~~L~L~~~~i~ 189 (815)
++|++|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777665
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=48.05 E-value=0.31 Score=52.81 Aligned_cols=185 Identities=17% Similarity=0.127 Sum_probs=97.2
Q ss_pred cceEEEeccCCcccCchhh--hcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccC----
Q 044882 515 LKKIEIRECDALKSLPEAW--MCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSS---- 588 (815)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~---- 588 (815)
+..+.+.+|..-..-.... .....++|+.|++++|... ......+-..+... -..+++|++..+.+++.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~----~~~l~~L~l~~c~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLP----QCLLQTLELVSCSLTSEGAAP 163 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccc----hHHHHHHHhhcccccccchHH
Confidence 5555555555433322111 1166788999999988544 22211111111110 12344455555554433
Q ss_pred cccccCCCCCCceEEeccCCCcc----cccC----CCCCCCCcceEEeccccccccc----ccccCCCCC-cCcEEecCC
Q 044882 589 SRSGLHNLRQLQEISIRRCGNLV----SFPE----GGLPCAKLTRLEISSCKRLEAL----PKGLHNLTS-LQELTIGRG 655 (815)
Q Consensus 589 ~~~~~~~l~~L~~L~l~~~~~l~----~~~~----~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~-L~~L~l~~~ 655 (815)
+.+.+.....++.++++.|.... .++. .+.+..++++|.+.+|...... ...+...++ +..|++..|
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 24455567889999999887532 1122 2234567888888888755321 123445555 677888777
Q ss_pred CCCCCC------CCCCCC-CCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 656 VELPSL------KEDGLP-TNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 656 ~~~~~~------~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
. +.+. +....+ ..++.++++.|.............+..++.++++.+.+
T Consensus 244 ~-l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 244 K-LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred C-cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 3 3321 111222 56677777777655433332223445556666666666
No 90
>PF12379 DUF3655: Protein of unknown function (DUF3655) ; InterPro: IPR024358 This domain is found in human SARS coronavirus polyprotein 1a and 1ab and in related coronavirus polyproteins. The domain, which is approximately 70 amino acids in length, identifies the N terminus of non-structural protein 3 (Nsp3). ; PDB: 2IDY_A 2GRI_A.
Probab=40.44 E-value=13 Score=25.98 Aligned_cols=11 Identities=55% Similarity=1.225 Sum_probs=5.8
Q ss_pred CeEeecCCCCc
Q 044882 1 AYCSLFPKDYE 11 (815)
Q Consensus 1 ~ycslfPed~~ 11 (815)
+|||.||.|-+
T Consensus 1 mycsfyppdee 11 (70)
T PF12379_consen 1 MYCSFYPPDEE 11 (70)
T ss_dssp -EEESS-S---
T ss_pred CcccccCCchh
Confidence 59999999865
No 91
>PF14162 YozD: YozD-like protein
Probab=34.86 E-value=48 Score=22.65 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHHHhCCCceeeC
Q 044882 35 PSEDLGRKFFRELRARSFIQQSS 57 (815)
Q Consensus 35 ~~~~~~~~~l~~L~~~~ll~~~~ 57 (815)
+.+++|+-++.+|+.|+++....
T Consensus 9 DTEEIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 9 DTEEIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred cHHHHHHHHHHHHHHccCCCcHH
Confidence 46899999999999999986543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.67 E-value=28 Score=37.65 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=45.2
Q ss_pred ccccccccccccccccCc--ccccCCCCCCceEEeccCCCcccccCCC--CCCCCcceEEeccccccccccc-------c
Q 044882 572 CDNIRTLTVEEGIQSSSS--RSGLHNLRQLQEISIRRCGNLVSFPEGG--LPCAKLTRLEISSCKRLEALPK-------G 640 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~-------~ 640 (815)
-+.+..+.+++|++.... ..--...|.|+.|+|++|.........+ .....|++|.+.||++.+.+.. .
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 345556666666664321 1122347889999999883222111111 2235788899999987664432 1
Q ss_pred cCCCCCcCcEE
Q 044882 641 LHNLTSLQELT 651 (815)
Q Consensus 641 ~~~l~~L~~L~ 651 (815)
-..+|+|..||
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 13577776665
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=23.33 E-value=1.4e+02 Score=19.88 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=13.5
Q ss_pred CcCcEEecCCCCCCCCCCCCCCCCCceEEEc
Q 044882 646 SLQELTIGRGVELPSLKEDGLPTNLQSLTIE 676 (815)
Q Consensus 646 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 676 (815)
++++|.+.++ .-..+.....+++|++|.+.
T Consensus 13 ~l~~L~~g~~-fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSS-FNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCc-cCccCCCCccCCCceEEEee
Confidence 5555555333 11222233455556555554
Done!