Query 044882
Match_columns 815
No_of_seqs 553 out of 3903
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 13:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4E-50 1.4E-54 467.7 24.5 641 97-811 49-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-45 4.5E-50 429.7 24.9 599 123-789 50-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-40 1.1E-44 381.8 36.4 545 149-764 45-619 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 9.3E-40 3.2E-44 377.8 35.7 579 144-804 18-636 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-38 3.7E-43 363.9 32.5 512 123-789 32-557 (606)
6 3t6q_A CD180 antigen; protein- 100.0 7.4E-38 2.5E-42 357.0 34.6 507 154-789 34-559 (606)
7 3t6q_A CD180 antigen; protein- 100.0 6.4E-38 2.2E-42 357.5 28.5 504 123-765 33-558 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3E-34 1E-38 327.2 32.3 505 96-679 30-556 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.5E-34 2.2E-38 334.8 36.0 505 153-788 24-558 (844)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-33 3.8E-38 318.6 32.5 458 153-765 26-508 (549)
11 4eco_A Uncharacterized protein 100.0 4.8E-35 1.7E-39 332.5 19.3 207 123-395 81-364 (636)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-33 1E-37 329.1 34.0 500 156-788 7-537 (844)
13 2z81_A CD282 antigen, TOLL-lik 100.0 3E-34 1E-38 323.2 24.2 466 123-746 26-513 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 3E-33 1E-37 316.8 31.4 480 123-741 28-529 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 1.9E-33 6.4E-38 318.6 28.8 483 153-764 28-528 (570)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-32 6.4E-37 306.0 28.8 436 153-765 21-479 (520)
17 4eco_A Uncharacterized protein 100.0 2.6E-33 8.7E-38 318.4 20.9 100 153-253 81-255 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 8.3E-33 2.8E-37 318.1 23.2 370 186-682 435-841 (876)
19 4ecn_A Leucine-rich repeat pro 100.0 2.7E-32 9.2E-37 313.9 19.1 417 153-765 323-838 (876)
20 4g8a_A TOLL-like receptor 4; l 100.0 5.8E-31 2E-35 302.7 28.4 98 154-253 53-154 (635)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-30 4.4E-35 293.3 27.2 224 514-764 277-507 (562)
22 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-31 2.6E-35 293.0 24.1 452 156-789 3-480 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-30 6E-35 298.7 26.2 517 156-788 34-578 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.9E-30 9.8E-35 290.5 26.2 437 145-679 46-508 (562)
25 1jl5_A Outer protein YOPM; leu 100.0 9.4E-30 3.2E-34 275.8 21.7 416 151-788 9-427 (454)
26 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-28 4.1E-33 267.3 20.4 355 146-662 35-391 (457)
27 3v47_A TOLL-like receptor 5B a 100.0 2.5E-28 8.5E-33 267.9 18.5 82 153-234 30-114 (455)
28 1o6v_A Internalin A; bacterial 100.0 2.7E-27 9.2E-32 259.5 25.5 118 121-252 44-161 (466)
29 1jl5_A Outer protein YOPM; leu 99.9 1.8E-27 6E-32 257.9 18.6 403 122-659 10-430 (454)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-27 5.3E-32 258.6 18.1 262 118-478 37-299 (457)
31 1o6v_A Internalin A; bacterial 99.9 6.9E-27 2.4E-31 256.2 23.0 189 151-395 44-232 (466)
32 3v47_A TOLL-like receptor 5B a 99.9 4.7E-26 1.6E-30 249.8 23.5 95 155-252 12-108 (455)
33 2id5_A Lingo-1, leucine rich r 99.9 2.1E-25 7.1E-30 245.9 24.6 84 573-656 248-331 (477)
34 4fmz_A Internalin; leucine ric 99.9 1.9E-25 6.7E-30 235.2 20.8 86 150-240 41-126 (347)
35 3o6n_A APL1; leucine-rich repe 99.9 2.8E-25 9.5E-30 237.8 20.8 110 570-683 245-354 (390)
36 4fmz_A Internalin; leucine ric 99.9 7.3E-25 2.5E-29 230.8 19.7 122 118-252 39-160 (347)
37 3oja_B Anopheles plasmodium-re 99.9 3.7E-24 1.3E-28 241.8 22.0 110 570-683 251-360 (597)
38 2id5_A Lingo-1, leucine rich r 99.9 2.6E-23 9E-28 229.1 24.8 310 340-741 15-331 (477)
39 3o6n_A APL1; leucine-rich repe 99.9 2.2E-23 7.6E-28 223.0 21.6 89 151-241 43-134 (390)
40 3oja_B Anopheles plasmodium-re 99.9 1.4E-22 4.9E-27 228.8 22.3 105 592-705 249-354 (597)
41 1xku_A Decorin; proteoglycan, 99.9 7.8E-22 2.7E-26 205.7 24.2 85 153-241 31-117 (330)
42 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-21 6.6E-26 202.8 23.6 86 153-242 33-120 (332)
43 4fcg_A Uncharacterized protein 99.9 2.5E-22 8.6E-27 208.1 16.7 94 151-245 79-172 (328)
44 4fcg_A Uncharacterized protein 99.9 1.7E-21 5.8E-26 201.9 16.3 124 121-252 79-211 (328)
45 1ogq_A PGIP-2, polygalacturona 99.9 5.9E-22 2E-26 204.2 11.3 251 513-791 50-305 (313)
46 1xku_A Decorin; proteoglycan, 99.9 1.2E-20 4.2E-25 196.6 20.8 259 337-680 32-305 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 1.2E-20 4.2E-25 196.7 20.3 281 337-705 34-329 (332)
48 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-20 4.3E-25 210.1 19.0 79 153-241 40-118 (622)
49 2z80_A TOLL-like receptor 2, v 99.8 5.3E-20 1.8E-24 193.7 18.4 87 152-242 30-118 (353)
50 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.3E-26 222.4 5.4 61 174-234 110-175 (592)
51 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.7E-25 194.7 11.8 229 513-771 76-308 (313)
52 3zyj_A Leucine-rich repeat-con 99.8 1.4E-19 4.9E-24 196.5 20.8 233 505-765 56-290 (440)
53 3zyi_A Leucine-rich repeat-con 99.8 1.7E-19 5.9E-24 196.6 20.7 233 505-765 67-301 (452)
54 3zyi_A Leucine-rich repeat-con 99.8 3.6E-19 1.2E-23 194.0 22.6 82 155-240 56-139 (452)
55 3zyj_A Leucine-rich repeat-con 99.8 4.1E-19 1.4E-23 192.9 22.7 82 155-240 45-128 (440)
56 3g06_A SSPH2 (leucine-rich rep 99.8 9.9E-19 3.4E-23 194.9 23.6 59 176-241 40-98 (622)
57 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-22 5.2E-27 222.3 -7.4 81 153-234 3-96 (461)
58 3ogk_B Coronatine-insensitive 99.8 1.4E-21 4.9E-26 221.9 -1.5 104 151-254 110-227 (592)
59 1z7x_W Ribonuclease inhibitor; 99.8 3E-22 1E-26 220.0 -8.3 85 149-234 24-124 (461)
60 2z66_A Variable lymphocyte rec 99.8 7.5E-19 2.6E-23 181.0 17.4 85 157-245 11-99 (306)
61 2z80_A TOLL-like receptor 2, v 99.8 7E-19 2.4E-23 185.2 16.2 259 505-788 44-312 (353)
62 3o53_A Protein LRIM1, AGAP0063 99.8 5.2E-20 1.8E-24 190.2 5.0 66 593-659 210-276 (317)
63 2z66_A Variable lymphocyte rec 99.8 1.7E-18 5.7E-23 178.4 16.0 164 505-679 20-186 (306)
64 2xwt_C Thyrotropin receptor; s 99.8 1.6E-18 5.6E-23 171.2 14.8 200 574-790 32-239 (239)
65 2p1m_B Transport inhibitor res 99.8 1.8E-20 6E-25 213.2 -1.2 406 173-705 102-540 (594)
66 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-18 4.7E-23 176.9 11.5 179 571-765 54-236 (285)
67 1wwl_A Monocyte differentiatio 99.8 4.1E-19 1.4E-23 183.1 7.3 250 513-788 43-307 (312)
68 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-17 5.9E-22 168.7 17.7 201 573-789 32-237 (285)
69 2p1m_B Transport inhibitor res 99.7 6E-21 2E-25 217.0 -9.1 84 150-234 102-195 (594)
70 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-19 1.5E-23 183.2 4.9 211 514-764 35-247 (317)
71 2xwt_C Thyrotropin receptor; s 99.7 8.1E-17 2.8E-21 158.9 16.0 208 505-766 24-238 (239)
72 2z62_A TOLL-like receptor 4, v 99.7 6.5E-17 2.2E-21 163.6 15.1 109 570-679 49-160 (276)
73 1wwl_A Monocyte differentiatio 99.7 3.3E-18 1.1E-22 176.2 5.4 224 513-764 63-306 (312)
74 3oja_A Leucine-rich immune mol 99.7 1.6E-17 5.6E-22 181.6 9.8 169 573-761 99-269 (487)
75 3rfs_A Internalin B, repeat mo 99.7 1.3E-16 4.4E-21 160.7 14.6 57 337-394 158-215 (272)
76 2z62_A TOLL-like receptor 4, v 99.7 2E-16 6.8E-21 160.0 15.2 212 505-764 20-234 (276)
77 2o6q_A Variable lymphocyte rec 99.7 5.3E-16 1.8E-20 156.1 18.1 175 575-765 39-216 (270)
78 1p9a_G Platelet glycoprotein I 99.7 3.8E-16 1.3E-20 158.4 16.8 172 574-764 32-205 (290)
79 3oja_A Leucine-rich immune mol 99.7 4.8E-17 1.6E-21 177.9 10.6 238 333-653 31-270 (487)
80 1h6u_A Internalin H; cell adhe 99.7 8.8E-17 3E-21 164.9 11.5 171 148-395 58-228 (308)
81 4ay9_X Follicle-stimulating ho 99.7 9.1E-16 3.1E-20 160.7 19.2 229 505-762 22-254 (350)
82 4glp_A Monocyte differentiatio 99.7 2.5E-16 8.4E-21 162.1 14.0 204 572-788 90-305 (310)
83 2o6q_A Variable lymphocyte rec 99.7 1.4E-15 4.8E-20 153.0 19.0 194 575-788 18-216 (270)
84 1p9a_G Platelet glycoprotein I 99.7 9.1E-16 3.1E-20 155.6 17.7 198 570-789 7-207 (290)
85 4ay9_X Follicle-stimulating ho 99.6 5.8E-15 2E-19 154.6 20.1 238 447-739 13-255 (350)
86 1h6u_A Internalin H; cell adhe 99.6 4.9E-16 1.7E-20 159.3 11.3 140 97-253 40-179 (308)
87 3rfs_A Internalin B, repeat mo 99.6 1.3E-15 4.6E-20 153.2 12.5 85 571-655 83-167 (272)
88 4glp_A Monocyte differentiatio 99.6 1.1E-15 3.7E-20 157.3 12.0 153 595-764 143-304 (310)
89 2ast_B S-phase kinase-associat 99.6 4.4E-17 1.5E-21 170.4 -0.6 216 571-804 91-319 (336)
90 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.4E-21 166.9 1.3 120 124-252 48-173 (336)
91 3m19_A Variable lymphocyte rec 99.6 2.2E-14 7.6E-19 142.4 16.1 152 575-764 37-189 (251)
92 1h6t_A Internalin B; cell adhe 99.6 7.6E-15 2.6E-19 149.0 11.1 169 150-395 43-211 (291)
93 3m19_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 142.2 13.9 154 597-789 35-191 (251)
94 2ca6_A RAN GTPase-activating p 99.5 2.2E-16 7.4E-21 168.3 -4.6 241 513-765 32-314 (386)
95 2ca6_A RAN GTPase-activating p 99.5 7E-16 2.4E-20 164.4 -2.5 239 118-395 27-314 (386)
96 1h6t_A Internalin B; cell adhe 99.5 5.9E-14 2E-18 142.4 11.0 120 119-252 42-161 (291)
97 1xeu_A Internalin C; cellular 99.5 1.9E-14 6.5E-19 143.5 6.9 166 152-395 18-183 (263)
98 1m9s_A Internalin B; cell inva 99.5 4.1E-14 1.4E-18 157.6 10.3 97 150-252 40-136 (605)
99 4ezg_A Putative uncharacterize 99.5 5.5E-14 1.9E-18 133.7 9.4 101 150-252 41-141 (197)
100 2o6s_A Variable lymphocyte rec 99.5 2.4E-13 8.4E-18 130.6 13.6 75 157-234 11-87 (208)
101 4ezg_A Putative uncharacterize 99.5 1.2E-13 4.2E-18 131.3 10.4 147 513-705 44-190 (197)
102 3goz_A Leucine-rich repeat-con 99.5 2.1E-15 7.1E-20 158.9 -3.0 237 513-764 22-294 (362)
103 3cvr_A Invasion plasmid antige 99.5 2.2E-13 7.4E-18 149.9 12.6 58 336-398 180-244 (571)
104 3cvr_A Invasion plasmid antige 99.4 7.3E-13 2.5E-17 145.7 15.4 183 539-765 59-241 (571)
105 2o6s_A Variable lymphocyte rec 99.4 3.6E-13 1.2E-17 129.5 11.4 159 574-754 29-189 (208)
106 1m9s_A Internalin B; cell inva 99.4 1.5E-13 5.2E-18 153.0 9.7 176 569-772 39-214 (605)
107 2v9t_B SLIT homolog 2 protein 99.4 8.5E-13 2.9E-17 127.6 13.8 82 156-241 14-97 (220)
108 3e6j_A Variable lymphocyte rec 99.4 8.7E-13 3E-17 128.6 13.4 76 156-234 22-99 (229)
109 3goz_A Leucine-rich repeat-con 99.4 6.6E-15 2.3E-19 155.0 -2.8 255 518-788 3-295 (362)
110 2je0_A Acidic leucine-rich nuc 99.4 4.4E-13 1.5E-17 121.0 9.0 124 122-254 16-147 (149)
111 2ell_A Acidic leucine-rich nuc 99.4 1E-12 3.5E-17 121.4 10.9 127 122-257 23-157 (168)
112 1xeu_A Internalin C; cellular 99.4 3.6E-13 1.2E-17 134.2 8.1 170 573-771 19-188 (263)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 3.9E-12 1.3E-16 123.0 13.1 110 570-680 54-165 (220)
114 3e6j_A Variable lymphocyte rec 99.4 1.9E-12 6.5E-17 126.1 11.0 124 123-254 40-166 (229)
115 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-12 5.7E-17 120.8 9.3 129 117-256 13-149 (176)
116 2xot_A Amphoterin-induced prot 99.3 2.1E-12 7.1E-17 135.6 10.4 137 575-715 41-180 (361)
117 2v9t_B SLIT homolog 2 protein 99.3 4.8E-12 1.6E-16 122.3 12.1 110 570-680 53-164 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 6.7E-12 2.3E-16 121.3 12.5 85 571-655 79-163 (220)
119 2ell_A Acidic leucine-rich nuc 99.3 7.5E-12 2.6E-16 115.5 10.0 137 96-242 22-165 (168)
120 2xot_A Amphoterin-induced prot 99.3 6.2E-12 2.1E-16 132.0 9.7 164 505-680 31-201 (361)
121 4b8c_D Glucose-repressible alc 99.3 7.4E-12 2.5E-16 143.3 10.6 108 145-254 216-323 (727)
122 2je0_A Acidic leucine-rich nuc 99.3 5.5E-12 1.9E-16 113.8 6.6 102 150-254 14-120 (149)
123 2wfh_A SLIT homolog 2 protein 99.2 5.3E-11 1.8E-15 112.1 11.8 81 156-240 13-94 (193)
124 4b8c_D Glucose-repressible alc 99.2 5.5E-12 1.9E-16 144.4 5.0 121 118-246 219-339 (727)
125 1dce_A Protein (RAB geranylger 99.2 3E-11 1E-15 133.7 10.3 98 154-255 442-541 (567)
126 3sb4_A Hypothetical leucine ri 99.2 3.1E-11 1E-15 125.0 9.2 192 572-782 100-326 (329)
127 2wfh_A SLIT homolog 2 protein 99.2 5.5E-11 1.9E-15 112.0 9.9 99 153-253 31-132 (193)
128 1a9n_A U2A', U2A'; complex (nu 99.2 2.2E-11 7.5E-16 113.2 6.4 104 147-254 13-120 (176)
129 1w8a_A SLIT protein; signaling 99.1 1E-10 3.6E-15 110.2 10.1 99 154-253 30-132 (192)
130 1w8a_A SLIT protein; signaling 99.1 1.3E-10 4.5E-15 109.5 9.5 85 571-655 52-136 (192)
131 1dce_A Protein (RAB geranylger 99.1 1.1E-10 3.8E-15 129.2 10.1 126 145-274 401-538 (567)
132 2r9u_A Variable lymphocyte rec 99.1 1.2E-10 4.1E-15 107.5 8.1 100 144-247 26-128 (174)
133 1ds9_A Outer arm dynein; leuci 99.1 7.8E-13 2.7E-17 125.8 -7.0 102 148-253 43-146 (198)
134 1ds9_A Outer arm dynein; leuci 99.1 4.5E-12 1.6E-16 120.5 -3.0 126 118-253 43-180 (198)
135 2r9u_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 104.6 8.8 96 156-255 15-113 (174)
136 2o6r_A Variable lymphocyte rec 99.0 8.6E-10 2.9E-14 102.5 11.4 106 574-680 29-136 (177)
137 3g39_A Variable lymphocyte rec 99.0 4.3E-10 1.5E-14 103.5 8.8 81 153-234 30-113 (170)
138 3sb4_A Hypothetical leucine ri 99.0 2.6E-09 9E-14 110.4 15.0 225 152-404 48-292 (329)
139 2o6r_A Variable lymphocyte rec 99.0 8.4E-10 2.9E-14 102.6 9.9 84 150-234 49-135 (177)
140 3g39_A Variable lymphocyte rec 99.0 5.4E-10 1.8E-14 102.8 8.2 98 155-256 11-111 (170)
141 4fdw_A Leucine rich hypothetic 99.0 1.8E-08 6E-13 106.4 19.4 252 514-807 136-396 (401)
142 2a5y_B CED-4; apoptosis; HET: 99.0 1.5E-10 5.2E-15 128.2 3.5 76 2-82 395-473 (549)
143 4fdw_A Leucine rich hypothetic 98.8 8.7E-08 3E-12 101.1 18.8 233 515-787 115-355 (401)
144 4fs7_A Uncharacterized protein 98.7 9.2E-07 3.1E-11 93.8 21.7 190 569-786 181-375 (394)
145 4fs7_A Uncharacterized protein 98.7 1.3E-06 4.5E-11 92.5 22.5 64 165-231 59-125 (394)
146 2ifg_A High affinity nerve gro 98.7 2.4E-08 8.1E-13 104.3 7.8 88 145-234 24-114 (347)
147 2ifg_A High affinity nerve gro 98.7 3.5E-08 1.2E-12 102.9 8.6 96 157-255 12-111 (347)
148 3un9_A NLR family member X1; l 98.4 6.9E-09 2.3E-13 108.4 -6.1 36 728-764 209-249 (372)
149 3un9_A NLR family member X1; l 98.4 6.2E-09 2.1E-13 108.8 -6.7 68 667-740 182-249 (372)
150 2ra8_A Uncharacterized protein 98.1 4.1E-06 1.4E-10 86.5 7.2 60 593-655 135-203 (362)
151 4gt6_A Cell surface protein; l 98.1 0.00024 8.2E-09 75.0 21.2 104 569-678 261-367 (394)
152 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.6E-11 77.0 3.9 82 621-705 61-148 (176)
153 3rw6_A Nuclear RNA export fact 98.0 2E-06 6.7E-11 83.9 2.6 104 150-255 138-259 (267)
154 2ra8_A Uncharacterized protein 98.0 2.8E-06 9.5E-11 87.7 3.2 60 592-654 167-228 (362)
155 4gt6_A Cell surface protein; l 97.9 0.00068 2.3E-08 71.5 21.3 104 569-678 284-388 (394)
156 3e4g_A ATP synthase subunit S, 97.9 9.9E-06 3.4E-10 72.8 5.9 85 513-609 61-151 (176)
157 3rw6_A Nuclear RNA export fact 97.9 8.9E-06 3E-10 79.3 5.9 80 150-230 167-258 (267)
158 1vt4_I APAF-1 related killer D 97.9 5.2E-06 1.8E-10 94.3 3.5 62 1-74 376-437 (1221)
159 4h09_A Hypothetical leucine ri 97.8 0.0039 1.3E-07 65.3 24.2 68 691-772 281-349 (379)
160 1io0_A Tropomodulin; LRR prote 97.8 1.4E-05 4.8E-10 74.1 4.4 85 149-234 61-162 (185)
161 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4.1E-10 74.6 3.9 105 147-253 30-157 (185)
162 3sfz_A APAF-1, apoptotic pepti 97.7 1.7E-05 5.9E-10 98.1 4.9 68 1-80 384-452 (1249)
163 4h09_A Hypothetical leucine ri 97.6 0.00075 2.5E-08 70.8 15.1 139 592-752 212-354 (379)
164 1z6t_A APAF-1, apoptotic prote 96.9 0.00048 1.6E-08 77.2 4.3 64 2-77 385-449 (591)
165 3rfe_A Platelet glycoprotein I 96.5 0.0038 1.3E-07 53.3 6.0 52 156-209 11-65 (130)
166 1pgv_A TMD-1, tropomodulin TMD 94.2 0.056 1.9E-06 49.4 5.6 83 150-233 38-136 (197)
167 3rfe_A Platelet glycoprotein I 94.1 0.063 2.2E-06 45.6 5.4 53 601-656 12-66 (130)
168 1pgv_A TMD-1, tropomodulin TMD 91.7 0.11 3.8E-06 47.5 3.5 109 121-234 39-168 (197)
169 3lqv_P Splicing factor 3B subu 36.4 6.6 0.00022 24.2 -0.2 9 4-12 30-38 (39)
170 2lz0_A Uncharacterized protein 34.2 64 0.0022 25.3 5.2 38 724-763 14-52 (100)
171 2lz0_A Uncharacterized protein 31.3 1.8E+02 0.006 22.7 7.3 37 592-630 15-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-50 Score=467.66 Aligned_cols=641 Identities=14% Similarity=0.113 Sum_probs=366.6
Q ss_pred CCceeEEEeeccccccc-c-cccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcc-ccCc--c
Q 044882 97 SENLRHLSYIPEYCDGV-K-RFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPD--S 171 (815)
Q Consensus 97 ~~~~r~l~~~~~~~~~~-~-~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~ 171 (815)
...++.+.+........ . -.+.+.++++|+.+...... + ...+..+..+++|++|+|++|.+. .+|. .
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~------~-~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH------I-NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS 121 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC------E-EECCCCCCCCTTCCEEECCSSEEEEEGGGGGG
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC------c-CCCchhhccCCCCCEEECCCCcCCCcCCChHH
Confidence 34566666554322211 0 11334455555555443321 1 234466777888888888888776 4565 7
Q ss_pred ccCCccCCEEecCCCCCC-ccchhh-hccCCCcEEeccCCccccccchh---hcCcCCcceeeccCCCcccccccccccc
Q 044882 172 IGDLRYLRYLNLSGTEIR-TLPESV-NKLYNLHSLLLEDCDRLKKLCAD---MGNLAKLHHLKNSNTKSLEEMPVGIGRL 246 (815)
Q Consensus 172 ~~~l~~L~~L~L~~~~i~-~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~~l~~~p~~i~~L 246 (815)
++++++|++|+|++|.+. ..|..+ +++++|++|++++|......|.. ++++++|++|++++|...+..| ++.+
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l 199 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTC
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccC
Confidence 778888888888887765 445444 67788888888887433444444 6777888888888777333222 3667
Q ss_pred cccccccceeeccCC-CCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHH
Q 044882 247 TSLQTLCNFVVGKGS-GSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIE 325 (815)
Q Consensus 247 ~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 325 (815)
++|++|+........ ...+..+++|+.| .+..- .........+..+++|+.|++++|...+.
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L----~Ls~n----~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------- 262 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHL----DISGN----KLSGDFSRAISTCTELKLLNISSNQFVGP--------- 262 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEE----ECCSS----CCCSCHHHHTTTCSSCCEEECCSSCCEES---------
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEE----ECcCC----cCCCcccHHHhcCCCCCEEECCCCcccCc---------
Confidence 777777543322211 1113333333333 22111 11112333456666666666666654110
Q ss_pred HHHhhcCCCCCCcccEEEeecCCC-CCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCcc
Q 044882 326 KDVLNMLKPHENLEQFCISGYGGT-KFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSE 403 (815)
Q Consensus 326 ~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~ 403 (815)
... ..+++|++|+++++.+. .+|.++.. .+++|++|++++|.+.+.+| .++.+++|++|++++|.....++..
T Consensus 263 ---~~~-~~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 263 ---IPP-LPLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp ---CCC-CCCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred ---cCc-cccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 011 14556666666666554 55665542 24666777776666655555 5666666777777666443344443
Q ss_pred ccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCC-CcceeeeccCcccccCCCCC-----CCCccEEEEecccC
Q 044882 404 FYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFP-KLRELHILRCSKLKGTFPEH-----LPALEMLVIEGCEE 477 (815)
Q Consensus 404 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~lp~~-----l~~L~~L~l~~~~~ 477 (815)
.+.. +++|+.|++.++....... ..+..++ +|+.|++++ +++.+.+|.. +++|+.|++.+|..
T Consensus 338 ~l~~-----l~~L~~L~Ls~n~l~~~~p-----~~l~~l~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 338 TLLK-----MRGLKVLDLSFNEFSGELP-----ESLTNLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp HHTT-----CTTCCEEECCSSEEEECCC-----TTHHHHTTTCSEEECCS-SEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred HHhc-----CCCCCEEeCcCCccCcccc-----HHHHhhhcCCcEEEccC-CCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 3332 5666666666543211111 1222343 666666666 3455444422 44566666666643
Q ss_pred c---cccCCCCCCcceEEeCCCCccccccccCCCC--CCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCc
Q 044882 478 L---LVSVTSLPALCKFISGGCKKVVWKSAAGHPG--SQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSL 552 (815)
Q Consensus 478 l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 552 (815)
. ...+..+++|+.|++++|... ...+. ...++|++|++++|...+.+|..+ ..+++|+.|++++|...
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLS-----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLT 479 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEE-----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCC
T ss_pred ccccCHHHhcCCCCCEEECcCCccc-----CcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCccc
Confidence 2 233445566666666665432 11111 112456666666666555555554 45666666666666433
Q ss_pred hhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccc
Q 044882 553 TYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK 632 (815)
Q Consensus 553 ~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~ 632 (815)
..++. .+.+|++|+.|++++|.+.+..|..+..+++|++|++++|.....+|..+..+++|+.|++++|+
T Consensus 480 ~~~p~----------~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 480 GEIPS----------GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SCCCG----------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CcCCH----------HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 22221 13455666666666666666666666666666666666666555666666666666666666666
Q ss_pred cccccccccCCCCCcCcEEecCC----------------------------------------------CCCCCCC-CCC
Q 044882 633 RLEALPKGLHNLTSLQELTIGRG----------------------------------------------VELPSLK-EDG 665 (815)
Q Consensus 633 ~~~~~~~~~~~l~~L~~L~l~~~----------------------------------------------~~~~~~~-~~~ 665 (815)
+.+.+|..+.....+..+.+..+ ..-..+| ..+
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 66666655544433333222110 0000011 123
Q ss_pred CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcc-cCCCCccccccccCCCCCCccceEEecCCCCCc
Q 044882 666 LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMV-SFPPKADDKRLGTALPLPASLTSLWISGFPNLE 744 (815)
Q Consensus 666 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~ 744 (815)
.+++|+.|++++|...... +..+..+++|+.|++++ +.+. .+|. .+..+++|+.|+|++|+...
T Consensus 630 ~l~~L~~LdLs~N~l~g~i----p~~l~~l~~L~~L~Ls~--N~l~g~ip~---------~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYI----PKEIGSMPYLFILNLGH--NDISGSIPD---------EVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp SSBCCCEEECCSSCCBSCC----CGGGGGCTTCCEEECCS--SCCCSCCCG---------GGGGCTTCCEEECCSSCCEE
T ss_pred ccccccEEECcCCcccccC----CHHHhccccCCEEeCcC--CccCCCCCh---------HHhCCCCCCEEECCCCcccC
Confidence 4678999999999765432 25688999999999999 4444 5654 44678999999999966666
Q ss_pred cccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCcchH----HHHhccCCCcccccccccce
Q 044882 745 RLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIE----EKCRKDGGQYWDLLTHIPDV 811 (815)
Q Consensus 745 ~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~w~~~~~i~~~ 811 (815)
.+|..+..+++|++|++++|+--..+|..+.+.++....+.|||.+. ..|....+++|++|+|+|..
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 89999999999999999997666678887777788888888877553 27999999999999999865
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-45 Score=429.71 Aligned_cols=599 Identities=16% Similarity=0.077 Sum_probs=384.0
Q ss_pred CCceEEccccCCcCcCCCcccc---ccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCC-ccch--hhh
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYS---ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIR-TLPE--SVN 196 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~---~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~--~i~ 196 (815)
.+++.|.+.+.. +... +++.+..+++|++++++.+.+..+|..|+++++|++|+|++|.+. .+|. .++
T Consensus 50 ~~v~~L~L~~~~------l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKP------LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSC------CCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCC------cCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 578888776543 3344 778889999999999999999888899999999999999999987 6777 899
Q ss_pred ccCCCcEEeccCCccccccchhh-cCcCCcceeeccCCCcccccccc---cccccccccccceeeccCCCCCcccccccc
Q 044882 197 KLYNLHSLLLEDCDRLKKLCADM-GNLAKLHHLKNSNTKSLEEMPVG---IGRLTSLQTLCNFVVGKGSGSGLRELKLLT 272 (815)
Q Consensus 197 ~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~l~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~ 272 (815)
++++|++|++++|......|..+ +++++|++|++++|...+..|.. ++++++|++|+..............+++|+
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~ 203 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCC
T ss_pred CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCC
Confidence 99999999999995555667665 89999999999999844455555 788999999864433222222223444444
Q ss_pred ccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCC-C
Q 044882 273 HLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK-F 351 (815)
Q Consensus 273 ~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~ 351 (815)
.|. +..-.. ....+. +..+++|++|++++|... ......+..+++|+.|++++|.... +
T Consensus 204 ~L~----Ls~n~l----~~~~~~-l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 204 FLD----VSSNNF----STGIPF-LGDCSALQHLDISGNKLS-----------GDFSRAISTCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp EEE----CCSSCC----CSCCCB-CTTCCSCCEEECCSSCCC-----------SCHHHHTTTCSSCCEEECCSSCCEESC
T ss_pred EEE----CcCCcC----CCCCcc-cccCCCCCEEECcCCcCC-----------CcccHHHhcCCCCCEEECCCCcccCcc
Confidence 332 111110 111112 666777777777776551 1233455666777777777776542 2
Q ss_pred CccCCCCCCCCccEEEEecCCCCCCCC-CCCC-CCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccccc
Q 044882 352 PTWFGDSSFSNLVTLEFENCDMCTALP-SVGQ-LPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWED 429 (815)
Q Consensus 352 p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 429 (815)
|.. .+++|++|++++|.+.+.+| .+.. +++|++|++++|.....++.. ++. +++|+.|++.++.....
T Consensus 264 ~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~-----l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 264 PPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGS-----CSLLESLALSSNNFSGE 333 (768)
T ss_dssp CCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGG-----CTTCCEEECCSSEEEEE
T ss_pred Ccc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-Hhc-----CCCccEEECCCCcccCc
Confidence 332 36777777777777665555 4444 377777777776433333222 222 66777777766543222
Q ss_pred ccccCCCCCcccCCCcceeeeccCcccccCCCCCC---C-CccEEEEecccCcc---ccCCC--CCCcceEEeCCCCccc
Q 044882 430 WIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHL---P-ALEMLVIEGCEELL---VSVTS--LPALCKFISGGCKKVV 500 (815)
Q Consensus 430 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l---~-~L~~L~l~~~~~l~---~~~~~--~~~L~~L~l~~~~~~~ 500 (815)
+.. ..+..+++|++|++++| .+.+.+|..+ + +|+.|++++|.... ..+.. +++|+.|++++|....
T Consensus 334 ip~----~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 334 LPM----DTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp CCH----HHHTTCTTCCEEECCSS-EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred CCH----HHHhcCCCCCEEeCcCC-ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 211 11225677777777773 5555666432 3 67777777665321 11112 5567777776665431
Q ss_pred cccccCCC--CCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccc
Q 044882 501 WKSAAGHP--GSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTL 578 (815)
Q Consensus 501 ~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l 578 (815)
..+ ....++|++|++++|...+.+|..+ ..+++|+.|++++|.....++. .+..+++|+.+
T Consensus 409 -----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~----------~~~~l~~L~~L 471 (768)
T 3rgz_A 409 -----KIPPTLSNCSELVSLHLSFNYLSGTIPSSL--GSLSKLRDLKLWLNMLEGEIPQ----------ELMYVKTLETL 471 (768)
T ss_dssp -----ECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCCSCCCG----------GGGGCTTCCEE
T ss_pred -----ccCHHHhcCCCCCEEECcCCcccCcccHHH--hcCCCCCEEECCCCcccCcCCH----------HHcCCCCceEE
Confidence 111 1112567777777776555555555 5667777777777654332221 13456677777
Q ss_pred cccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCC
Q 044882 579 TVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVEL 658 (815)
Q Consensus 579 ~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 658 (815)
++++|.+.+..|..+.++++|++|++++|.....+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+..
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 77777777777777777777777777777766677777777777777777777777777777777777777777777555
Q ss_pred CCCCCC-CCCCCCce---------EEEcCCcch--------------------hh-------------hhhhcCcCcccC
Q 044882 659 PSLKED-GLPTNLQS---------LTIEGNMEI--------------------WK-------------SMIERGRGFHRF 695 (815)
Q Consensus 659 ~~~~~~-~~~~~L~~---------L~l~~~~~l--------------------~~-------------~~~~~~~~~~~l 695 (815)
..+|.. .....+.. .++.++... .. .....+..+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 444432 11111111 111111000 00 000012346778
Q ss_pred CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCC-CC
Q 044882 696 SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPE-KG 774 (815)
Q Consensus 696 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~-~~ 774 (815)
++|+.|++++ +.....+|. .++.+++|+.|++++|.....+|..++.+++|++|++++|.--..+|. .+
T Consensus 632 ~~L~~LdLs~-N~l~g~ip~---------~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 632 GSMMFLDMSY-NMLSGYIPK---------EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp BCCCEEECCS-SCCBSCCCG---------GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccccEEECcC-CcccccCCH---------HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 9999999999 333335554 346789999999999666668999999999999999999644446665 23
Q ss_pred CCCccceeeecCCcc
Q 044882 775 LPSSLLQLDIWGCPL 789 (815)
Q Consensus 775 ~~~~L~~L~i~~c~~ 789 (815)
.+++|++|++++|+-
T Consensus 702 ~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 702 ALTMLTEIDLSNNNL 716 (768)
T ss_dssp GCCCCSEEECCSSEE
T ss_pred CCCCCCEEECcCCcc
Confidence 457899999999863
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.1e-40 Score=381.77 Aligned_cols=545 Identities=17% Similarity=0.123 Sum_probs=264.7
Q ss_pred ccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccc-hhhcCcCCc
Q 044882 149 LFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKL 225 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L 225 (815)
|.++++|++|+|++|.++.+ |..|+++++|++|++++|.++.+|. .++++++|++|++++| .+..+| ..++++++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCC
Confidence 44455555555555555443 3444555555555555555554443 3455555555555555 333333 334555555
Q ss_pred ceeeccCCCcccccccccccccccccccceeeccCCC--CC--ccccccccccccceeeecccccCChhhhhhcccCCCc
Q 044882 226 HHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSG--SG--LRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKK 301 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~--~~--~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 301 (815)
++|++++|......|..++++++|++|+......... .. ...+++|+.|. +....+ .......+..+.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l------~~~~~~~~~~l~ 195 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE--LSSNQI------KEFSPGCFHAIG 195 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE--CTTCCC------CCBCTTGGGGSS
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE--CCCCcc------cccChhhhhhhh
Confidence 5555555542222233344455555443221110000 00 00111222111 000000 011112234455
Q ss_pred CCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCC-CccCCCCCCCCccEEEEecCCCCCCCC-C
Q 044882 302 NLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKF-PTWFGDSSFSNLVTLEFENCDMCTALP-S 379 (815)
Q Consensus 302 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~ 379 (815)
+|+.+.+..+... ..........+ ..++|+.|+++++....+ |.++.....++|++|++++|.+....+ .
T Consensus 196 ~L~~L~l~~~~l~-------~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 267 (680)
T 1ziw_A 196 RLFGLFLNNVQLG-------PSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267 (680)
T ss_dssp EECEEECTTCCCH-------HHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT
T ss_pred hhhhhhccccccC-------hhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc
Confidence 6666666544330 00011111111 246788888888776554 344432112458888888888776655 6
Q ss_pred CCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccccccc----ccCCCCCcccCCCcceeeeccCcc
Q 044882 380 VGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWI----PLRSGQGVEGFPKLRELHILRCSK 455 (815)
Q Consensus 380 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~----~~~~~~~~~~~~~L~~L~l~~c~~ 455 (815)
++.+++|++|++++|. +..+....+.. +++|+.|.+.+...-..+. .......+..+++|+.|++++ +.
T Consensus 268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~-----l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~-n~ 340 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNN-IQHLFSHSLHG-----LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED-ND 340 (680)
T ss_dssp TTTCTTCCEEECCSCC-BSEECTTTTTT-----CTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS-CC
T ss_pred ccCcccccEeeCCCCc-cCccChhhhcC-----CCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC-Cc
Confidence 7888888888888874 33333333332 6777777776432110000 000001333677788888877 45
Q ss_pred cccCCC---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchh
Q 044882 456 LKGTFP---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEA 532 (815)
Q Consensus 456 l~~~lp---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 532 (815)
+.+..| ..+++|+.|++++|..-...++ ...+.....++|+.|++++|......+..
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~--------------------~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLT--------------------NETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEEC--------------------TTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcc--------------------hhhhcccccCcCceEECCCCCCCeEChhh
Confidence 654333 2345566666555431100000 00000001145777777777655444444
Q ss_pred hhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCc--
Q 044882 533 WMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNL-- 610 (815)
Q Consensus 533 ~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l-- 610 (815)
+ ..+++|+.|++++|.....++.. .+.++++|+.+++++|.+.+..+..+..+++|++|++++|...
T Consensus 401 ~--~~l~~L~~L~L~~N~l~~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 401 F--SWLGHLEVLDLGLNEIGQELTGQ---------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp T--TTCTTCCEEECCSSCCEEECCSG---------GGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred h--hCCCCCCEEeCCCCcCccccCcc---------cccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 4 56777777777777443222211 1345566666666666666666666666777777777766543
Q ss_pred ccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC----------CCCCCCCceEEEcCCcc
Q 044882 611 VSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE----------DGLPTNLQSLTIEGNME 680 (815)
Q Consensus 611 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~L~~L~l~~~~~ 680 (815)
...|..+..+++|++|++++|.+.+..+..+.++++|++|++++|. ++.++. .+.+++|++|++++|..
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 3456666666777777777776665555556666777777777663 332211 13344555555555533
Q ss_pred hhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCC-CCCCCCe
Q 044882 681 IWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIV-DLQNLAS 758 (815)
Q Consensus 681 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~-~l~~L~~ 758 (815)
... +. ..+.++++|+.|++++ +.+..++. ..|..+++|+.|++++ +.++.+++ .+. .+++|++
T Consensus 549 ~~i--~~--~~~~~l~~L~~L~Ls~--N~l~~l~~--------~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~ 613 (680)
T 1ziw_A 549 DEI--PV--EVFKDLFELKIIDLGL--NNLNTLPA--------SVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTE 613 (680)
T ss_dssp CCC--CT--TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSE
T ss_pred CCC--CH--HHcccccCcceeECCC--CCCCcCCH--------hHhCCCCCCCEEECCC-CcCCccChhHhcccccccCE
Confidence 210 00 2344555555555544 44444443 2233444555555555 34444433 222 3445555
Q ss_pred eeeCCC
Q 044882 759 LYLGDC 764 (815)
Q Consensus 759 L~i~~c 764 (815)
|+++++
T Consensus 614 l~l~~N 619 (680)
T 1ziw_A 614 LDMRFN 619 (680)
T ss_dssp EECTTC
T ss_pred EEccCC
Confidence 555443
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.3e-40 Score=377.84 Aligned_cols=579 Identities=16% Similarity=0.115 Sum_probs=391.8
Q ss_pred cccccccCCCcccEEEcCCCCccccCc-cccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccch-hhc
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMG 220 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~ 220 (815)
.+|..+. +++++|+|++|.++.+|. .|+++++|++|++++|.+..+ |..++++++|++|++++| .+..+|. .|+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~ 94 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFA 94 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhc
Confidence 3444443 689999999999998864 689999999999999999876 688999999999999999 7888886 589
Q ss_pred CcCCcceeeccCCCcccccc-cccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCC
Q 044882 221 NLAKLHHLKNSNTKSLEEMP-VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDG 299 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 299 (815)
++++|++|++++|. +..+| ..++++++|++|+...... . ......+..
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l------------------------~------~~~~~~~~~ 143 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGL------------------------S------STKLGTQVQ 143 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCC------------------------S------CCCCCSSSC
T ss_pred cCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcc------------------------c------ccCchhhcc
Confidence 99999999999998 66666 4588999999885322110 0 001122566
Q ss_pred CcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc-cCCCCCCCCccEEEEecCCCCCCC-
Q 044882 300 KKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT-WFGDSSFSNLVTLEFENCDMCTAL- 377 (815)
Q Consensus 300 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l- 377 (815)
+++|++|++++|..++.. ...+. ....++|+.|+++++.+..++. ++. .+++|+.|++.++.+....
T Consensus 144 l~~L~~L~L~~n~l~~~~--------~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~ 212 (680)
T 1ziw_A 144 LENLQELLLSNNKIQALK--------SEELD-IFANSSLKKLELSSNQIKEFSPGCFH--AIGRLFGLFLNNVQLGPSLT 212 (680)
T ss_dssp CTTCCEEECCSSCCCCBC--------HHHHG-GGTTCEESEEECTTCCCCCBCTTGGG--GSSEECEEECTTCCCHHHHH
T ss_pred cccCCEEEccCCcccccC--------HHHhh-ccccccccEEECCCCcccccChhhhh--hhhhhhhhhccccccChhhH
Confidence 788888888877652111 00111 1234678888888877665543 333 4677888887776643211
Q ss_pred ---CCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCc
Q 044882 378 ---PSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCS 454 (815)
Q Consensus 378 ---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 454 (815)
+.....++|+.|++++|.. ..+....+.. ...++|+.|++.+... ..... ..+..+++|+.|++++|
T Consensus 213 ~~~~~~l~~~~L~~L~L~~n~l-~~~~~~~~~~---l~~~~L~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~L~~n- 282 (680)
T 1ziw_A 213 EKLCLELANTSIRNLSLSNSQL-STTSNTTFLG---LKWTNLTMLDLSYNNL-NVVGN----DSFAWLPQLEYFFLEYN- 282 (680)
T ss_dssp HHHHHHHTTSCCCEEECTTSCC-CEECTTTTGG---GGGSCCCEEECTTSCC-CEECT----TTTTTCTTCCEEECCSC-
T ss_pred HHHHHHhhhccccEEEccCCcc-cccChhHhhc---cCcCCCCEEECCCCCc-CccCc----ccccCcccccEeeCCCC-
Confidence 0001236788888887743 3333222221 1123488888776532 22211 23346788888888874
Q ss_pred ccccCCC---CCCCCccEEEEecccCc--------c----ccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEE
Q 044882 455 KLKGTFP---EHLPALEMLVIEGCEEL--------L----VSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIE 519 (815)
Q Consensus 455 ~l~~~lp---~~l~~L~~L~l~~~~~l--------~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 519 (815)
++.+..| ..+++|+.|++.++... . ..+..+++|+.|++++|..... ........++|++|+
T Consensus 283 ~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI---KSNMFTGLINLKYLS 359 (680)
T ss_dssp CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC---CTTTTTTCTTCCEEE
T ss_pred ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC---ChhHhccccCCcEEE
Confidence 5654444 35677788887654311 1 1344567777777766653211 111112235677777
Q ss_pred EeccCC-cccCchhhh-cCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc-cccCCC
Q 044882 520 IRECDA-LKSLPEAWM-CGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR-SGLHNL 596 (815)
Q Consensus 520 l~~~~~-l~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~-~~~~~l 596 (815)
+++|.. ...++...+ ....++|+.|++++|.... +... .+.++++|+.+++++|.+.+..+ ..+.++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~-~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l 429 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK-IESD---------AFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE-ECTT---------TTTTCTTCCEEECCSSCCEEECCSGGGTTC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCe-EChh---------hhhCCCCCCEEeCCCCcCccccCcccccCc
Confidence 776642 222222111 0123567777777764221 1111 24567889999999999987655 678899
Q ss_pred CCCceEEeccCCCcccccCCCCCCCCcceEEecccccc--cccccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCce
Q 044882 597 RQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL--EALPKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQS 672 (815)
Q Consensus 597 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~ 672 (815)
++|++|++++|......+..+..+++|++|++++|.+. +.+|..+..+++|++|++++| .++.++. .+.+++|++
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEI 508 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCE
Confidence 99999999999877677778888999999999999875 567888999999999999999 4555554 367899999
Q ss_pred EEEcCCcchhhhhhhc----CcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 673 LTIEGNMEIWKSMIER----GRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 673 L~l~~~~~l~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
|++++|.......... ...+.++++|+.|++++ +.+..+|. ..|..+++|+.|++++ +.++.+|+
T Consensus 509 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~--------~~~~~l~~L~~L~Ls~-N~l~~l~~ 577 (680)
T 1ziw_A 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPV--------EVFKDLFELKIIDLGL-NNLNTLPA 577 (680)
T ss_dssp EECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCEEECCS-SCCCCCCT
T ss_pred EeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCH--------HHcccccCcceeECCC-CCCCcCCH
Confidence 9999997654221110 12378899999999998 67778876 3457889999999999 78888887
Q ss_pred -cCCCCCCCCeeeeCCCCCCcccCCCC---CCCccceeeecCCcchHHHHhc-cCCCcccc
Q 044882 749 -SIVDLQNLASLYLGDCPKLKYFPEKG---LPSSLLQLDIWGCPLIEEKCRK-DGGQYWDL 804 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~~~~~~-~~~~~w~~ 804 (815)
.+..+++|++|++++| .++.++... .+++|+.|++++||-..+ |.. .+-..|.+
T Consensus 578 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~~~~~~~~~~~ 636 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT-CESIAWFVNWIN 636 (680)
T ss_dssp TTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC-CCCCSSEECCSS
T ss_pred hHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC-CccHHHHHHHHH
Confidence 4678999999999995 888887643 347999999999885443 432 33345543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-38 Score=363.85 Aligned_cols=512 Identities=14% Similarity=0.082 Sum_probs=339.3
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCcc-chhhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~ 200 (815)
++++.|.+.++. +....+..|.++++|++|++++|.++.+ |.+|+++++|++|+|++|.++.+ |..++++++
T Consensus 32 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 32 SSTKNIDLSFNP------LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp TTCCEEECTTSC------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCcCEEECCCCC------cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 678888877654 4444455778999999999999999987 67789999999999999999877 788999999
Q ss_pred CcEEeccCCccccccc-hhhcCcCCcceeeccCCCccc-ccccccccccccccccceeeccCCCCCccccccccccccce
Q 044882 201 LHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSNTKSLE-EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTL 278 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 278 (815)
|++|++++| .+..+| ..++++++|++|++++|.... .+|..++++++|++|+........ .....+..+..|
T Consensus 106 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L---- 179 (606)
T 3vq2_A 106 LENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLREN---- 179 (606)
T ss_dssp CCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHC----
T ss_pred CCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee-cChhhhhhhhcc----
Confidence 999999999 666665 678999999999999998332 478888888888888432211000 000001111100
Q ss_pred eeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCC
Q 044882 279 NISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDS 358 (815)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 358 (815)
+ ..+..|+++++.+..+|.....
T Consensus 180 -------------------------~-------------------------------~~l~~L~l~~n~l~~~~~~~~~- 202 (606)
T 3vq2_A 180 -------------------------P-------------------------------QVNLSLDMSLNPIDFIQDQAFQ- 202 (606)
T ss_dssp -------------------------T-------------------------------TCCCEEECTTCCCCEECTTTTT-
T ss_pred -------------------------c-------------------------------cccceeeccCCCcceeCccccc-
Confidence 0 0133455556665566655542
Q ss_pred CCCCccEEEEecCCCCCC-CC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCC
Q 044882 359 SFSNLVTLEFENCDMCTA-LP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSG 436 (815)
Q Consensus 359 ~l~~L~~L~L~~~~~~~~-l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 436 (815)
..+|+.|++++|.+... .+ .++.++.|+.+.+.......... ........+..+.
T Consensus 203 -~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---l~~~~~~~~~~l~------------------- 259 (606)
T 3vq2_A 203 -GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---LEIFEPSIMEGLC------------------- 259 (606)
T ss_dssp -TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---CSCCCGGGGTTGG-------------------
T ss_pred -CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc---ccccChHHhhhhh-------------------
Confidence 34788888888876532 22 45667777776664321100000 0000000011111
Q ss_pred CCcccCCCcceeeeccCcccccCCC--CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccc
Q 044882 437 QGVEGFPKLRELHILRCSKLKGTFP--EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSV 514 (815)
Q Consensus 437 ~~~~~~~~L~~L~l~~c~~l~~~lp--~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 514 (815)
. -.++.+.+..++.+.+.+| ..+++|+.|++.++..... +.+ ...++
T Consensus 260 ----~-l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l--~~l------------------------~~~~~ 308 (606)
T 3vq2_A 260 ----D-VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDV------------------------PKHFK 308 (606)
T ss_dssp ----G-SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC--CCC------------------------CTTCC
T ss_pred ----h-ccHhheeccccccccccccccccCCCCCEEEecCccchhh--hhc------------------------ccccc
Confidence 1 1344555544455554443 2345555555555432110 000 11146
Q ss_pred cceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCc--ccc
Q 044882 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS--RSG 592 (815)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~--~~~ 592 (815)
|++|++++|.. +.+|. + .+++|++|++++|..+..+ .+..+++|+.+++++|.+.+.. +..
T Consensus 309 L~~L~l~~n~l-~~lp~-~---~l~~L~~L~l~~n~~~~~~------------~~~~l~~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 309 WQSLSIIRCQL-KQFPT-L---DLPFLKSLTLTMNKGSISF------------KKVALPSLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp CSEEEEESCCC-SSCCC-C---CCSSCCEEEEESCSSCEEC------------CCCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred CCEEEcccccC-ccccc-C---CCCccceeeccCCcCccch------------hhccCCCCCEEECcCCccCCCcchhhh
Confidence 77777777765 66662 1 6788888888888544322 2456677788888888777653 667
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCC-CCCCCCC
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKE-DGLPTNL 670 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L 670 (815)
+..+++|++|++++|. ...+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+. .+.+++|
T Consensus 372 ~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 450 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450 (606)
T ss_dssp HHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred hccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC
Confidence 7888999999999887 55677788888999999999998877776 5788899999999999965554443 3677899
Q ss_pred ceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccC
Q 044882 671 QSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSI 750 (815)
Q Consensus 671 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 750 (815)
++|++++|....... +..+..+++|+.|++++ +.+..++. ..+..+++|+.|++++|+.....|..+
T Consensus 451 ~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~Ls~--n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 451 NTLKMAGNSFKDNTL---SNVFANTTNLTFLDLSK--CQLEQISW--------GVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp CEEECTTCEEGGGEE---CSCCTTCTTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred CEEECCCCcCCCcch---HHhhccCCCCCEEECCC--CcCCccCh--------hhhcccccCCEEECCCCcCCCcCHHHc
Confidence 999999987554212 25678889999999998 45555544 345678899999999964444447788
Q ss_pred CCCCCCCeeeeCCCCCCcccCCC--CCCCccceeeecCCcc
Q 044882 751 VDLQNLASLYLGDCPKLKYFPEK--GLPSSLLQLDIWGCPL 789 (815)
Q Consensus 751 ~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~c~~ 789 (815)
..+++|++|++++| .++.+|.. .++++|+.|++++||-
T Consensus 518 ~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 518 NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 89999999999986 58888873 3345799999988764
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-38 Score=356.97 Aligned_cols=507 Identities=15% Similarity=0.134 Sum_probs=341.4
Q ss_pred cccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 154 RLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
.+++|+|++|.++.+ |.+|+++++|++|+|++|.+..+ |..|+++++|++|++++|......|..++++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 578888888888877 66788888888888888888865 6778888888888888884334446778888888888888
Q ss_pred CCCccccc-ccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEE
Q 044882 232 NTKSLEEM-PVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRW 310 (815)
Q Consensus 232 ~~~~l~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 310 (815)
+|. +..+ |..++++++|++| ++++
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L------------------------------------------------------~L~~ 138 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESL------------------------------------------------------YLGS 138 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEE------------------------------------------------------ECCS
T ss_pred ccC-cccCCcchhccCCcccEE------------------------------------------------------ECCC
Confidence 887 5544 3345555555555 3333
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc-cCCCCCCCCcc--EEEEecCCCCCCCCCCCCCCCcC
Q 044882 311 TLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT-WFGDSSFSNLV--TLEFENCDMCTALPSVGQLPSLK 387 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~--~L~L~~~~~~~~l~~l~~l~~L~ 387 (815)
|...+. ....+..+++|+.|++++|.+..++. .+. .+++|+ .|++++|.+.+..+......+|+
T Consensus 139 n~l~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~ 205 (606)
T 3t6q_A 139 NHISSI-----------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMS--SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205 (606)
T ss_dssp SCCCCC-----------CCCTTCCCTTCCEEECCSSCCCEECHHHHH--TTTTCCSEEEECTTCCCCEECTTTTTTCEEE
T ss_pred Cccccc-----------CcccccCCcccCEEEcccCcccccChhhhh--hhcccceeEEecCCCccCccChhHhhhcccc
Confidence 332100 01223336788888888887776643 333 467777 78888888777766555567888
Q ss_pred eeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccC--CCcceeeeccCcccccCCC---C
Q 044882 388 HLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGF--PKLRELHILRCSKLKGTFP---E 462 (815)
Q Consensus 388 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~lp---~ 462 (815)
.|++++|..+....... ....++.+.+..+........ ....+..+ .+|+.|++++ +.+++..+ .
T Consensus 206 ~L~l~~~~~~~~~~~~l-------~~~~l~~l~~~~~~~~~~~~i--~~~~~~~l~~~~L~~L~l~~-n~l~~~~~~~~~ 275 (606)
T 3t6q_A 206 SLNFGGTQNLLVIFKGL-------KNSTIQSLWLGTFEDMDDEDI--SPAVFEGLCEMSVESINLQK-HYFFNISSNTFH 275 (606)
T ss_dssp EEECTTCSCHHHHHHHT-------TTCEEEEEECCCCTTSCCCCC--CGGGGGGGGGSEEEEEECTT-CCCSSCCTTTTT
T ss_pred ccccCCchhHHHHhhhc-------cccchhheechhhcccccccc--ChhHhchhhcCceeEEEeec-CccCccCHHHhc
Confidence 88888875332211100 011223333332222211110 00111111 2677777777 35552222 2
Q ss_pred CCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCC--CCccccceEEEeccCCcccCchhhhcCCCCC
Q 044882 463 HLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPG--SQNSVLKKIEIRECDALKSLPEAWMCGTNSS 540 (815)
Q Consensus 463 ~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 540 (815)
.+++|+.|++++|... .++. ...++|++|++++|......+..+ ..+++
T Consensus 276 ~l~~L~~L~l~~n~l~---------------------------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~ 326 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS---------------------------ELPSGLVGLSTLKKLVLSANKFENLCQISA--SNFPS 326 (606)
T ss_dssp TCTTCSEEECTTSCCS---------------------------CCCSSCCSCTTCCEEECTTCCCSBGGGGCG--GGCTT
T ss_pred cccCCCEEeccCCccC---------------------------CCChhhcccccCCEEECccCCcCcCchhhh--hccCc
Confidence 3456666666555321 1111 112577888888876554444444 67889
Q ss_pred cceEEEeccCCchhhhccccccccceEecccccccccccccccccccCc--ccccCCCCCCceEEeccCCCcccccCCCC
Q 044882 541 LEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS--RSGLHNLRQLQEISIRRCGNLVSFPEGGL 618 (815)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 618 (815)
|++|++++|.....++.. .+.++++|+.+++++|.+.+.. +..+..+++|++|++++|......|..+.
T Consensus 327 L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTG---------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp CSEEECCSCSSCCBCCSS---------TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred CCEEECCCCCcccccchh---------hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 999999988654333322 1456788888888888887766 67788999999999999987777788888
Q ss_pred CCCCcceEEeccccccccccc-ccCCCCCcCcEEecCCCCCCCCCC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCC
Q 044882 619 PCAKLTRLEISSCKRLEALPK-GLHNLTSLQELTIGRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFS 696 (815)
Q Consensus 619 ~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 696 (815)
.+++|++|++++|.+.+..+. .+..+++|++|++++|......+. .+.+++|++|++++|+......+ ....+..++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~ 476 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ-KTNSLQTLG 476 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEEC-SSCGGGGCT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccc-cchhhccCC
Confidence 899999999999998776654 488999999999999955444443 36789999999999976542211 114578899
Q ss_pred CccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCC--
Q 044882 697 SLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKG-- 774 (815)
Q Consensus 697 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~-- 774 (815)
+|+.|++++ +.+..++. ..+..+++|+.|++++|+.....|..+.++++| +|++++| +++.++...
T Consensus 477 ~L~~L~Ls~--n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~ 544 (606)
T 3t6q_A 477 RLEILVLSF--CDLSSIDQ--------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLP 544 (606)
T ss_dssp TCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHH
T ss_pred CccEEECCC--CccCccCh--------hhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcc
Confidence 999999999 45655544 345678999999999965555566689999999 9999985 677766533
Q ss_pred CCCccceeeecCCcc
Q 044882 775 LPSSLLQLDIWGCPL 789 (815)
Q Consensus 775 ~~~~L~~L~i~~c~~ 789 (815)
..++|+.|++++||-
T Consensus 545 ~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 545 ILSQQRTINLRQNPL 559 (606)
T ss_dssp HHHTSSEEECTTCCE
T ss_pred cCCCCCEEeCCCCCc
Confidence 247899999999874
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-38 Score=357.51 Aligned_cols=504 Identities=13% Similarity=0.099 Sum_probs=338.1
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCcc-chhhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~ 200 (815)
+.++.|.+.++. +....+..|.++++|++|+|++|.+..+ |.+|+++++|++|++++|.+..+ |..++++++
T Consensus 33 ~~l~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 33 NSTECLEFSFNV------LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp TTCCEEECTTCC------CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CcCcEEEccCCc------cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 478888877654 5555567889999999999999999977 78899999999999999999866 689999999
Q ss_pred CcEEeccCCcccccc-chhhcCcCCcceeeccCCCcccccc-cccccccccccccceeeccCCCCCccccccccccccce
Q 044882 201 LHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNTKSLEEMP-VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTL 278 (815)
Q Consensus 201 L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 278 (815)
|++|++++| .+..+ |..++++++|++|++++|. +..++ ..+..++
T Consensus 107 L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~------------------------------- 153 (606)
T 3t6q_A 107 LKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTE------------------------------- 153 (606)
T ss_dssp CCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCT-------------------------------
T ss_pred ccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCc-------------------------------
Confidence 999999999 66666 6779999999999999998 55442 1222233
Q ss_pred eeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcc--cEEEeecCCCCCCccCC
Q 044882 279 NISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLE--QFCISGYGGTKFPTWFG 356 (815)
Q Consensus 279 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~p~~~~ 356 (815)
+|+.|++++|.... .....+..+++|+ .|+++++.+..++....
T Consensus 154 -----------------------~L~~L~L~~n~l~~-----------~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 154 -----------------------KLKVLDFQNNAIHY-----------LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp -----------------------TCCEEECCSSCCCE-----------ECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred -----------------------ccCEEEcccCcccc-----------cChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 44455555554410 0112234456777 78888988887766554
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCCC--CcCeeeeccCCCce--ecCccccCCCCCCCCCCcceeeeccccccccccc
Q 044882 357 DSSFSNLVTLEFENCDMCTALPSVGQLP--SLKHLAVCGMSRVK--RLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIP 432 (815)
Q Consensus 357 ~~~l~~L~~L~L~~~~~~~~l~~l~~l~--~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 432 (815)
...+|+.|++++|..... .+..+. .++.+.+..+.... .+....+.+ ..-.+|+.+.+.+.. +.....
T Consensus 200 --~~~~L~~L~l~~~~~~~~--~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~---l~~~~L~~L~l~~n~-l~~~~~ 271 (606)
T 3t6q_A 200 --DSAVFQSLNFGGTQNLLV--IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG---LCEMSVESINLQKHY-FFNISS 271 (606)
T ss_dssp --TTCEEEEEECTTCSCHHH--HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG---GGGSEEEEEECTTCC-CSSCCT
T ss_pred --hhccccccccCCchhHHH--HhhhccccchhheechhhccccccccChhHhch---hhcCceeEEEeecCc-cCccCH
Confidence 356899999998862211 112222 23333333322221 111111111 011267777777653 222222
Q ss_pred cCCCCCcccCCCcceeeeccCcccccCCCC---CCCCccEEEEecccCccc---cCCCCCCcceEEeCCCCccccccccC
Q 044882 433 LRSGQGVEGFPKLRELHILRCSKLKGTFPE---HLPALEMLVIEGCEELLV---SVTSLPALCKFISGGCKKVVWKSAAG 506 (815)
Q Consensus 433 ~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~ 506 (815)
..+..+++|++|++++| .++ .+|. .+++|++|++++|..... .+..+
T Consensus 272 ----~~~~~l~~L~~L~l~~n-~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------- 324 (606)
T 3t6q_A 272 ----NTFHCFSGLQELDLTAT-HLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF--------------------- 324 (606)
T ss_dssp ----TTTTTCTTCSEEECTTS-CCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC---------------------
T ss_pred ----HHhccccCCCEEeccCC-ccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc---------------------
Confidence 33457899999999994 777 6774 456777887777753211 12223
Q ss_pred CCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccc
Q 044882 507 HPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 507 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~ 586 (815)
++|++|++++|.....++...+ ..+++|++|++++|.... +.. . ...+.++++|+.+++++|.+.
T Consensus 325 ------~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~--~-----~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 325 ------PSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIET-SDC--C-----NLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp ------TTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEECCSSCCCE-EEE--S-----TTTTTTCTTCCEEECCSCSCE
T ss_pred ------CcCCEEECCCCCcccccchhhh-hccCcCCEEECCCCcccc-ccC--c-----chhcccCCCCCEEECCCCcCC
Confidence 4566666666655545554432 677888888888774321 110 0 012456778888888888888
Q ss_pred cCcccccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCC-CC--
Q 044882 587 SSSRSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPS-LK-- 662 (815)
Q Consensus 587 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-- 662 (815)
+..+..+..+++|++|++++|......+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|..... ++
T Consensus 390 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 469 (606)
T 3t6q_A 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469 (606)
T ss_dssp EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSS
T ss_pred cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccc
Confidence 77778888888888888888876555444 367788888888888888777777888888888888888854331 11
Q ss_pred -CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCC
Q 044882 663 -EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFP 741 (815)
Q Consensus 663 -~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 741 (815)
..+.+++|++|++++|...... +..+..+++|+.|++++ +.+..++. ..+..+++| .|++++|
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~--N~l~~~~~--------~~l~~l~~L-~L~L~~N- 533 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSID----QHAFTSLKMMNHVDLSH--NRLTSSSI--------EALSHLKGI-YLNLASN- 533 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCS--SCCCGGGG--------GGGTTCCSC-EEECCSS-
T ss_pred hhhccCCCccEEECCCCccCccC----hhhhccccCCCEEECCC--CccCcCCh--------hHhCccccc-EEECcCC-
Confidence 2346788888888888654322 24677888899999988 45554443 244677888 8999995
Q ss_pred CCcccc-ccCCCCCCCCeeeeCCCC
Q 044882 742 NLERLS-SSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 742 ~l~~l~-~~~~~l~~L~~L~i~~c~ 765 (815)
.++.++ ..+..+++|++|++++||
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cccccCHhhcccCCCCCEEeCCCCC
Confidence 455554 467788899999999875
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-34 Score=327.19 Aligned_cols=505 Identities=14% Similarity=0.089 Sum_probs=294.4
Q ss_pred cCCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccC
Q 044882 96 FSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGD 174 (815)
Q Consensus 96 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~ 174 (815)
.+..++++.+..+...... ...+.++++|+.|.+.++. +....+..|.++++|++|+|++|.++.+ |.+|++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCE------IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC------CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCc------ccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 4577889888876544332 2467789999999887754 4444566789999999999999999987 889999
Q ss_pred CccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccc--ccchhhcCcCCcceeeccCCCccccc-ccccccccccc
Q 044882 175 LRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLK--KLCADMGNLAKLHHLKNSNTKSLEEM-PVGIGRLTSLQ 250 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~~L~ 250 (815)
+++|++|++++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++++|. +..+ |..++.+++|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENP 180 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCT
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccc
Confidence 999999999999999887 78999999999999999 555 579999999999999999998 5555 45588888776
Q ss_pred c----ccceeec--cCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhH
Q 044882 251 T----LCNFVVG--KGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEI 324 (815)
Q Consensus 251 ~----L~~~~~~--~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 324 (815)
. |+..... ......+... +|+.|. +. ............+..+..|+.+.+..+.......... .
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~----L~---~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~--~ 250 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGI-KLHELT----LR---GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI--F 250 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTC-EEEEEE----EE---SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC--C
T ss_pred cccceeeccCCCcceeCcccccCc-eeeeee----cc---CCccchhHHHHHhccccccccccccccccccCCcccc--c
Confidence 3 4221111 1111111111 333321 11 1111223344456667777777776654421111100 0
Q ss_pred HHHHhhcCCCCCCcccEEE-eecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCcc
Q 044882 325 EKDVLNMLKPHENLEQFCI-SGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSE 403 (815)
Q Consensus 325 ~~~~~~~l~~~~~L~~L~l-~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~ 403 (815)
....+..+... .++.+.+ ..+........+. .+++|+.|++++|.+. .++.+..+++|+.|++++|.. +.++ .
T Consensus 251 ~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp-~ 324 (606)
T 3vq2_A 251 EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFH--CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQL-KQFP-T 324 (606)
T ss_dssp CGGGGTTGGGS-EEEEEEECCCTTCCGGGGSCG--GGTTCSEEEEESCCCC-CCCCCCTTCCCSEEEEESCCC-SSCC-C
T ss_pred ChHHhhhhhhc-cHhheeccccccccccccccc--cCCCCCEEEecCccch-hhhhccccccCCEEEcccccC-cccc-c
Confidence 00111111111 2334444 2222221111122 4667777777777653 345666677777777777643 4433 1
Q ss_pred ccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccC--CC---CCCCCccEEEEecccCc
Q 044882 404 FYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGT--FP---EHLPALEMLVIEGCEEL 478 (815)
Q Consensus 404 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--lp---~~l~~L~~L~l~~~~~l 478 (815)
+ .+++|+.|.+.++...... .+..+++|+.|++++| .+++. +| ..+++|+.|++++|...
T Consensus 325 ~-------~l~~L~~L~l~~n~~~~~~-------~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 389 (606)
T 3vq2_A 325 L-------DLPFLKSLTLTMNKGSISF-------KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389 (606)
T ss_dssp C-------CCSSCCEEEEESCSSCEEC-------CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred C-------CCCccceeeccCCcCccch-------hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCccc
Confidence 1 2566666666555333222 1125677777777773 44422 12 23455555555554311
Q ss_pred c--ccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhh
Q 044882 479 L--VSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIA 556 (815)
Q Consensus 479 ~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 556 (815)
. ..+..+ ++|++|++++|......+...+ ..+++|+.|++++|......+
T Consensus 390 ~~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 390 IMSANFMGL---------------------------EELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EECCCCTTC---------------------------TTCCEEECTTSEEESTTTTTTT-TTCTTCCEEECTTSCCEECCT
T ss_pred cchhhccCC---------------------------CCCCeeECCCCccCCccChhhh-hccccCCEEECcCCCCCccch
Confidence 1 011111 3455555555543333331111 456666666666664322111
Q ss_pred ccccccccceEeccccccccccccccccccc-CcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc
Q 044882 557 AVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS-SSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE 635 (815)
Q Consensus 557 ~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 635 (815)
. .+.++++|+.+++++|.+.+ ..|..+..+++|++|++++|......|..+..+++|++|++++|++.+
T Consensus 442 ~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 442 G----------IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp T----------TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred h----------hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 1 13345566666666666655 345566666777777777766555555666666677777777776666
Q ss_pred ccccccCCCCCcCcEEecCCCCCCCCCCC-CCC-CCCceEEEcCCc
Q 044882 636 ALPKGLHNLTSLQELTIGRGVELPSLKED-GLP-TNLQSLTIEGNM 679 (815)
Q Consensus 636 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~-~~L~~L~l~~~~ 679 (815)
..|..+..+++|++|++++| .++.+|.. ..+ ++|++|++++|+
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred cCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 66666666677777777776 34444443 222 346666666665
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=334.78 Aligned_cols=505 Identities=16% Similarity=0.074 Sum_probs=246.0
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCC-CCcc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTE-IRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
++|++|+|++|.++.+ |.+|.++++|++|+|++|. +..+ |..++++++|++|+|++|......|..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 4566666666666654 4566666666666666663 3344 45566666666666666632223355666666666666
Q ss_pred ccCCCcccccccc--cccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceee
Q 044882 230 NSNTKSLEEMPVG--IGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELL 307 (815)
Q Consensus 230 l~~~~~l~~~p~~--i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 307 (815)
+++|.....+|.. ++++++|++|+........ . .....+..+++|+.|+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~------------------------~-----~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS------------------------L-----YLHPSFGKLNSLKSID 154 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC------------------------C-----CCCGGGGTCSSCCEEE
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccc------------------------c-----ccchhHhhCCCCCEEE
Confidence 6666533333433 5555555555322111000 0 0001133444555555
Q ss_pred eEEccCCCCCCCchhhHHHHHhhcCCCC--CCcccEEEeecCCCC-CCccCCCCCCC------CccEEEEecCCCCCCCC
Q 044882 308 LRWTLSTDGSSSREAEIEKDVLNMLKPH--ENLEQFCISGYGGTK-FPTWFGDSSFS------NLVTLEFENCDMCTALP 378 (815)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~-~p~~~~~~~l~------~L~~L~L~~~~~~~~l~ 378 (815)
+++|...+.... .+..+ ++|+.|+++++.... .|..+. .++ .|+.|++++|.+....+
T Consensus 155 Ls~N~i~~~~~~-----------~l~~l~~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 155 FSSNQIFLVCEH-----------ELEPLQGKTLSFFSLAANSLYSRVSVDWG--KCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp EESSCCCCCCSG-----------GGHHHHHCSSCCCEECCSBSCCCCCCCCC--SSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred CCCCcCCeeCHH-----------HcccccCCccceEECCCCccccccccchh--hcCCccccCceeEEecCCCcCchhHH
Confidence 555443211100 01111 456666666655432 222221 112 36677776665544333
Q ss_pred -CC---CCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcc--cCCCcceeeecc
Q 044882 379 -SV---GQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVE--GFPKLRELHILR 452 (815)
Q Consensus 379 -~l---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~--~~~~L~~L~l~~ 452 (815)
.+ ...+.++.+.+..+..-.... +.+ +..... ..+. ..++|+.|++++
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~-----------~~~-----------l~~~~~----~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFG-----------FHN-----------IKDPDQ----NTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSS-----------CSS-----------STTGGG----TTTTTTTTSCCCEEECTT
T ss_pred HHHHhhcCcccccceeccccccccccc-----------ccc-----------cCCCCh----hhhhccccCCccEEECCC
Confidence 11 122345555554221000000 000 000000 0111 246777888877
Q ss_pred CcccccCCC---CCCCCccEEEEecccCccc---cCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCc
Q 044882 453 CSKLKGTFP---EHLPALEMLVIEGCEELLV---SVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDAL 526 (815)
Q Consensus 453 c~~l~~~lp---~~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 526 (815)
| .+.+..| ..+++|+.|++++|..... .+..+ ++|++|++++|...
T Consensus 276 n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l---------------------------~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 276 G-FVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL---------------------------DNLQVLNLSYNLLG 327 (844)
T ss_dssp C-CCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC---------------------------SSCCEEEEESCCCS
T ss_pred C-cccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCC---------------------------CCCCEEECCCCCCC
Confidence 3 4543333 3456677777766643211 12222 34555555555433
Q ss_pred ccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEecc
Q 044882 527 KSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRR 606 (815)
Q Consensus 527 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~ 606 (815)
...+..+ ..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.+.+. ..+++|+.|++++
T Consensus 328 ~~~~~~~--~~l~~L~~L~L~~N~-i~~~~~~---------~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 328 ELYSSNF--YGLPKVAYIDLQKNH-IAIIQDQ---------TFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSG 390 (844)
T ss_dssp CCCSCSC--SSCTTCCEEECCSCC-CCCCCSS---------CSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred ccCHHHh--cCCCCCCEEECCCCC-CCccChh---------hhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence 3323333 455666666666652 2222111 133455566666666655432 2256666666666
Q ss_pred CCCcccccCCCCCCCCcceEEeccccccccc-ccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhh
Q 044882 607 CGNLVSFPEGGLPCAKLTRLEISSCKRLEAL-PKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 607 ~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~ 683 (815)
|+. ..+|.. ..+++.|++++|.+.+.- +..+..+++|++|++++|......+. ...+++|+.|++++|.....
T Consensus 391 N~l-~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 391 NKL-VTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp CCC-CCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred CCc-cccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 653 344432 345666666666654321 12244666677777776632221111 12356667777766653211
Q ss_pred hh-hhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeC
Q 044882 684 SM-IERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLG 762 (815)
Q Consensus 684 ~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~ 762 (815)
.. ...+..+.++++|+.|++++ +.+..++. ..+..+++|+.|++++ |.++.+|+.... ++|+.|+++
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~--------~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~-~~L~~L~Ls 534 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNH--NYLNSLPP--------GVFSHLTALRGLSLNS-NRLTVLSHNDLP-ANLEILDIS 534 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCH--HHHTTCCT--------TSSSSCCSCSEEEEES-CCCSSCCCCCCC-SCCCEEEEE
T ss_pred cccccchhhhcCcccccEEECCC--CcccccCh--------hHccchhhhheeECCC-CCCCccChhhhh-ccccEEECC
Confidence 00 00112456667777777776 45555554 3345566777777777 466666653332 677777777
Q ss_pred CCCCCcccCCCCCCCccceeeecCCc
Q 044882 763 DCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 763 ~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
+ ++++.++... +++|+.|+++++|
T Consensus 535 ~-N~l~~~~~~~-~~~L~~l~l~~Np 558 (844)
T 3j0a_A 535 R-NQLLAPNPDV-FVSLSVLDITHNK 558 (844)
T ss_dssp E-ECCCCCCSCC-CSSCCEEEEEEEC
T ss_pred C-CcCCCCChhH-hCCcCEEEecCCC
Confidence 6 3555554433 3467777776544
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-33 Score=318.57 Aligned_cols=458 Identities=16% Similarity=0.151 Sum_probs=246.0
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccchh-hcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 229 (815)
++|++|++++|.++.+ |.+|+++++|++|++++|.++.+| ..++++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 6788999999888876 567888899999999998888765 67888889999999888 56655544 88889999999
Q ss_pred ccCCCcccc--cccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceee
Q 044882 230 NSNTKSLEE--MPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELL 307 (815)
Q Consensus 230 l~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 307 (815)
+++|. +.. .|..++++++|++|+
T Consensus 105 Ls~n~-l~~~~~~~~~~~l~~L~~L~------------------------------------------------------ 129 (549)
T 2z81_A 105 LMGNP-YQTLGVTSLFPNLTNLQTLR------------------------------------------------------ 129 (549)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEE------------------------------------------------------
T ss_pred CCCCc-ccccchhhhhhccCCccEEE------------------------------------------------------
Confidence 98887 443 344455555555553
Q ss_pred eEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCC-CCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCC
Q 044882 308 LRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK-FPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPS 385 (815)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 385 (815)
+++|...+ ......+..+++|+.|+++++.+.. .|.++. .+++|++|++++|....... .++.+++
T Consensus 130 L~~n~~~~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 197 (549)
T 2z81_A 130 IGNVETFS----------EIRRIDFAGLTSLNELEIKALSLRNYQSQSLK--SIRDIHHLTLHLSESAFLLEIFADILSS 197 (549)
T ss_dssp EEESSSCC----------EECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSBSTTHHHHHHHSTTT
T ss_pred CCCCcccc----------ccCHhhhhcccccCeeeccCCcccccChhhhh--ccccCceEecccCcccccchhhHhhccc
Confidence 22221000 0000111222233333333333322 233333 24555555555554322111 1123445
Q ss_pred cCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----
Q 044882 386 LKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP---- 461 (815)
Q Consensus 386 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---- 461 (815)
|++|++++|... ..+ +. .. .....+++|+.|++.++ .+.+..+
T Consensus 198 L~~L~L~~n~l~-~~~-----------~~----------------~~----~~~~~~~~L~~L~l~~n-~l~~~~~~~l~ 244 (549)
T 2z81_A 198 VRYLELRDTNLA-RFQ-----------FS----------------PL----PVDEVSSPMKKLAFRGS-VLTDESFNELL 244 (549)
T ss_dssp BSEEEEESCBCT-TCC-----------CC----------------CC----SSCCCCCCCCEEEEESC-EEEHHHHHHHH
T ss_pred ccEEEccCCccc-ccc-----------cc----------------cc----chhhhhhcccceecccc-ccchhHHHHHH
Confidence 555555444211 000 00 00 00113566677777663 3332111
Q ss_pred ---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCccc-----Cchhh
Q 044882 462 ---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKS-----LPEAW 533 (815)
Q Consensus 462 ---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~ 533 (815)
..+++|+.+++.+|..... ..++.. ..-......+|+.|.+.++..... ++...
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~--~~~~~~----------------~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGL--GDFNPS----------------ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECC--SCCCCC----------------TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred HHhhhhcccccccccccccccc--cccccc----------------chhhhhhhcccccccccccccchhhhcccchhhh
Confidence 2345566666655532110 000000 000001124566666666542211 11111
Q ss_pred hcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc---cccCCCCCCceEEeccCCCc
Q 044882 534 MCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR---SGLHNLRQLQEISIRRCGNL 610 (815)
Q Consensus 534 ~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~---~~~~~l~~L~~L~l~~~~~l 610 (815)
...++|+.|++++|. ++.++.. + +.++++|+.|++++|.+.+..+ ..+..+++|++|++++|...
T Consensus 307 --~~~~~L~~L~l~~n~-l~~ip~~-----~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 374 (549)
T 2z81_A 307 --SLLEKVKRITVENSK-VFLVPCS-----F----SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR 374 (549)
T ss_dssp --HHSTTCCEEEEESSC-CCCCCHH-----H----HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC
T ss_pred --hhcccceEEEeccCc-cccCCHH-----H----HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc
Confidence 234567777777763 3332211 0 1245667777777777766543 23566777777777777543
Q ss_pred cccc--CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhc
Q 044882 611 VSFP--EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIER 688 (815)
Q Consensus 611 ~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 688 (815)
...+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++| .++.++.. .+++|++|++++|....
T Consensus 375 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~Ls~N~l~~------ 445 (549)
T 2z81_A 375 SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIRVVKTC-IPQTLEVLDVSNNNLDS------ 445 (549)
T ss_dssp CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTS-CCSCCCTT-SCTTCSEEECCSSCCSC------
T ss_pred ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCC-Ccccccch-hcCCceEEECCCCChhh------
Confidence 3211 23556677777777777654 56666677777777777777 34444432 34567777777774322
Q ss_pred CcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCC
Q 044882 689 GRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 689 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
.+..+++|++|++++ +.+..+|. . ..+++|+.|++++ +.++.+++ .+..+++|++|++++|+
T Consensus 446 --~~~~l~~L~~L~Ls~--N~l~~ip~----~------~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 446 --FSLFLPRLQELYISR--NKLKTLPD----A------SLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp --CCCCCTTCCEEECCS--SCCSSCCC----G------GGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred --hcccCChhcEEECCC--CccCcCCC----c------ccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCC
Confidence 234566677777766 45555554 1 2355666777766 34444443 45666666666666654
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.8e-35 Score=332.50 Aligned_cols=207 Identities=14% Similarity=0.143 Sum_probs=137.1
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccC---------------------------------
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP--------------------------------- 169 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp--------------------------------- 169 (815)
.+++.|.+.+.. +...+|+.+..+++|++|+|++|.+..-+
T Consensus 81 ~~V~~L~L~~~~------l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSLEGFG------ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEECTTSC------CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEEecCcc------cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence 467777766544 56678888888999999999888652111
Q ss_pred -cccc-------------------CCccCCEEecC--CCCCCccchhhhccCCCcEEeccCCccccc-------------
Q 044882 170 -DSIG-------------------DLRYLRYLNLS--GTEIRTLPESVNKLYNLHSLLLEDCDRLKK------------- 214 (815)
Q Consensus 170 -~~~~-------------------~l~~L~~L~L~--~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------- 214 (815)
..+. ....++.+.+. +|.++.+|..++++++|++|+|++| .+..
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSE 233 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccc
Confidence 1111 01122222222 4567778888999999999999998 5665
Q ss_pred -----cchhhc--CcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccC
Q 044882 215 -----LCADMG--NLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVK 287 (815)
Q Consensus 215 -----lp~~i~--~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~ 287 (815)
+|..++ ++++|++|++++|...+.+|..++++++|++|+...... +.
T Consensus 234 ~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~-----l~--------------------- 287 (636)
T 4eco_A 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG-----IS--------------------- 287 (636)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT-----SC---------------------
T ss_pred hhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC-----Cc---------------------
Confidence 898888 999999999999987778888888888888774211100 00
Q ss_pred ChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc--cCCCCCCCCccE
Q 044882 288 DVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT--WFGDSSFSNLVT 365 (815)
Q Consensus 288 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~ 365 (815)
. ..++. ....+..+..+++|+.|+++++.+..+|. ++. .+++|++
T Consensus 288 ~--~~lp~-----------------------------~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~--~l~~L~~ 334 (636)
T 4eco_A 288 G--EQLKD-----------------------------DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ--KMKKLGM 334 (636)
T ss_dssp H--HHHHH-----------------------------HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHT--TCTTCCE
T ss_pred c--ccchH-----------------------------HHHhhhccccCCCCCEEECCCCcCCccCchhhhc--cCCCCCE
Confidence 0 00000 00111122334567777777777777887 665 4788888
Q ss_pred EEEecCCCCCCCCCCCCCCCcCeeeeccCC
Q 044882 366 LEFENCDMCTALPSVGQLPSLKHLAVCGMS 395 (815)
Q Consensus 366 L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~ 395 (815)
|++++|.+.+.+|.++.+++|++|++++|.
T Consensus 335 L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp EECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred EeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 888888877667777788888888888773
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=329.06 Aligned_cols=500 Identities=16% Similarity=0.089 Sum_probs=316.6
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 233 (815)
++.+.++++++.+|. -.++|++|+|++|.|+.+ |..++++++|++|+|++|.....+ |..|+++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 578889999999997 457999999999999976 688999999999999999666677 778999999999999999
Q ss_pred CcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccC
Q 044882 234 KSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLS 313 (815)
Q Consensus 234 ~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 313 (815)
......|..++.+++|++|+...... .... .....+..++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l------------------------~~~~----~~~~~~~~L~------------ 123 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGL------------------------SDAV----LKDGYFRNLK------------ 123 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCC------------------------SSCC----STTCCCSSCS------------
T ss_pred cCcccCHhHccCCcccCEeeCcCCCC------------------------Cccc----ccCccccccC------------
Confidence 84334477788888888884321110 0000 0000123333
Q ss_pred CCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCC--ccCCCCCCCCccEEEEecCCCCCCCC-CCCCC--CCcCe
Q 044882 314 TDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFP--TWFGDSSFSNLVTLEFENCDMCTALP-SVGQL--PSLKH 388 (815)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p--~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l--~~L~~ 388 (815)
+|+.|++++|.+..++ ..+. .+++|++|++++|.+....+ .++.+ ++|+.
T Consensus 124 -----------------------~L~~L~Ls~N~l~~~~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 124 -----------------------ALTRLDLSKNQIRSLYLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp -----------------------SCCEEEEESCCCCCCCCCGGGG--TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred -----------------------CCCEEECCCCcccccccchhHh--hCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 4444444444443332 2232 35666666666666554433 34333 56666
Q ss_pred eeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCC-----
Q 044882 389 LAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEH----- 463 (815)
Q Consensus 389 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~----- 463 (815)
|++++|......+..+.. +++ .+ ....|+.|++++| .+.+..|..
T Consensus 179 L~L~~n~l~~~~~~~~~~------~~~----------------------~~-~~~~L~~L~Ls~n-~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGK------CMN----------------------PF-RNMVLEILDVSGN-GWTVDITGNFSNAI 228 (844)
T ss_dssp CEECCSBSCCCCCCCCCS------SSC----------------------TT-TTCCBSEEBCSSC-CSSTTTTSGGGGTS
T ss_pred EECCCCccccccccchhh------cCC----------------------cc-ccCceeEEecCCC-cCchhHHHHHHhhc
Confidence 666665322211111000 000 00 0112444444442 233222211
Q ss_pred -CCCccEEEEecccC--------c----cccCC--CCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCccc
Q 044882 464 -LPALEMLVIEGCEE--------L----LVSVT--SLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKS 528 (815)
Q Consensus 464 -l~~L~~L~l~~~~~--------l----~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 528 (815)
...++.+.+..+.. + ...+. ..++++.|+++++..... ........++|++|++++|.....
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL---NSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE---CSCCSSSCCCCCEEEEESCCCCEE
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc---ChhhhhcCCCCCEEECCCCcCCCC
Confidence 12333343331100 0 01111 136788888877754321 111122336788888888875555
Q ss_pred CchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCC
Q 044882 529 LPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCG 608 (815)
Q Consensus 529 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~ 608 (815)
.+..+ ..+++|++|++++|.. +.+. .-.+.++++|+.|++++|.+.+..+..+.++++|++|++++|.
T Consensus 306 ~~~~~--~~l~~L~~L~Ls~N~l-~~~~---------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 306 ADEAF--YGLDNLQVLNLSYNLL-GELY---------SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CTTTT--TTCSSCCEEEEESCCC-SCCC---------SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred ChHHh--cCCCCCCEEECCCCCC-CccC---------HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 45444 6788888888888843 2211 1124567788888888888887777778888888888888886
Q ss_pred CcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC---CCCCCCCceEEEcCCcchhhhh
Q 044882 609 NLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE---DGLPTNLQSLTIEGNMEIWKSM 685 (815)
Q Consensus 609 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~ 685 (815)
.. .++ .+++|+.|++++|++. .+|.. ..+++.|++++| .++.++. ...+++|+.|++++|.......
T Consensus 374 l~-~i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 374 LT-TIH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp SC-CCS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CC-ccc----CCCCcchhccCCCCcc-ccccc---ccccceeecccC-ccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 43 332 2678888888888765 44432 467888888888 4444433 2467899999999997543211
Q ss_pred hhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCC
Q 044882 686 IERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 686 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
. ..+..+++|+.|++++ +.+..++.. +.....+..+++|+.|++++| .++.+++ .+..+++|++|++++
T Consensus 444 ~---~~~~~~~~L~~L~Ls~--N~l~~~~~~---~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~- 513 (844)
T 3j0a_A 444 D---QTPSENPSLEQLFLGE--NMLQLAWET---ELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS- 513 (844)
T ss_dssp S---SSSCSCTTCCBCEEES--CCCSSSCCS---CCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEES-
T ss_pred c---cccccCCccccccCCC--Ccccccccc---ccchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCC-
Confidence 1 2456689999999998 555544431 112245677899999999994 6777765 678999999999998
Q ss_pred CCCcccCCCCCCCccceeeecCCc
Q 044882 765 PKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 765 ~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
++++.++...++++|+.|++++|.
T Consensus 514 N~l~~l~~~~~~~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 514 NRLTVLSHNDLPANLEILDISRNQ 537 (844)
T ss_dssp CCCSSCCCCCCCSCCCEEEEEEEC
T ss_pred CCCCccChhhhhccccEEECCCCc
Confidence 589999988788999999999875
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-34 Score=323.18 Aligned_cols=466 Identities=19% Similarity=0.188 Sum_probs=311.7
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccch-hhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~ 200 (815)
+++++|.+.++. +....+..|..+++|++|++++|+++.++ .+|+++++|++|++++|.+..+|. .++++++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc------cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 688999887754 44445677899999999999999999875 789999999999999999998875 5999999
Q ss_pred CcEEeccCCccccc--cchhhcCcCCcceeeccCCCccccccc-ccccccccccccceeeccCCCCCccccccccccccc
Q 044882 201 LHSLLLEDCDRLKK--LCADMGNLAKLHHLKNSNTKSLEEMPV-GIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGT 277 (815)
Q Consensus 201 L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 277 (815)
|++|++++| .+.. .|..++++++|++|++++|..++.+|. .++++++|++|+......
T Consensus 100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l------------------ 160 (549)
T 2z81_A 100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL------------------ 160 (549)
T ss_dssp CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC------------------
T ss_pred CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc------------------
Confidence 999999999 6663 567799999999999999986677764 577888777774322110
Q ss_pred eeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCC
Q 044882 278 LNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357 (815)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 357 (815)
. ......+..+++|+.|++ +++....+|.++..
T Consensus 161 ------~------~~~~~~l~~l~~L~~L~l-----------------------------------~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 161 ------R------NYQSQSLKSIRDIHHLTL-----------------------------------HLSESAFLLEIFAD 193 (549)
T ss_dssp ------C------EECTTTTTTCSEEEEEEE-----------------------------------ECSBSTTHHHHHHH
T ss_pred ------c------ccChhhhhccccCceEec-----------------------------------ccCcccccchhhHh
Confidence 0 001111333444444444 44444444444321
Q ss_pred CCCCCccEEEEecCCCCCC----CCCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccccccccc
Q 044882 358 SSFSNLVTLEFENCDMCTA----LPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPL 433 (815)
Q Consensus 358 ~~l~~L~~L~L~~~~~~~~----l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 433 (815)
.+++|++|++++|.+.+. .+....+++|+.|+++++.......... .
T Consensus 194 -~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----------------------~----- 244 (549)
T 2z81_A 194 -ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL-----------------------L----- 244 (549)
T ss_dssp -STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH-----------------------H-----
T ss_pred -hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH-----------------------H-----
Confidence 356666677766665542 1223445667777776652111100000 0
Q ss_pred CCCCCcccCCCcceeeeccCccccc---------CCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccc
Q 044882 434 RSGQGVEGFPKLRELHILRCSKLKG---------TFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSA 504 (815)
Q Consensus 434 ~~~~~~~~~~~L~~L~l~~c~~l~~---------~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 504 (815)
.....+++|+.+++++|. +.+ ..+..+++++.|.+.++..-... ..
T Consensus 245 ---~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~---------------------~~ 299 (549)
T 2z81_A 245 ---KLLRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY---------------------LF 299 (549)
T ss_dssp ---GGGGGCTTCCEEEEESCE-EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG---------------------GS
T ss_pred ---HHhhhhcccccccccccc-ccccccccccchhhhhhhcccccccccccccchhh---------------------hc
Confidence 001134555555555542 221 11133455555555544211000 00
Q ss_pred cCCC--CCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccc
Q 044882 505 AGHP--GSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE 582 (815)
Q Consensus 505 ~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~ 582 (815)
..++ .....+|++|++++|. +..+|..++ ..+++|++|++++|.....++.... .+..+++|+.|++++
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~-------~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENSK-VFLVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSA-------CKGAWPSLQTLVLSQ 370 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESSC-CCCCCHHHH-HHCTTCCEEECCSSCCCHHHHHHHT-------CTTSSTTCCEEECTT
T ss_pred ccchhhhhhcccceEEEeccCc-cccCCHHHH-hcCccccEEEccCCccccccccchh-------hhhccccCcEEEccC
Confidence 0000 0112578999999987 567777654 5789999999999976554432100 134567888889999
Q ss_pred cccccCcc--cccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCC
Q 044882 583 GIQSSSSR--SGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPS 660 (815)
Q Consensus 583 n~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 660 (815)
|.+++..+ ..+..+++|++|++++|. ++.+|..+..+++|++|++++|.+. .+|..+ .++|++|++++| .++.
T Consensus 371 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N-~l~~ 445 (549)
T 2z81_A 371 NHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNN-NLDS 445 (549)
T ss_dssp SCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSS-CCSC
T ss_pred CcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCC-Chhh
Confidence 98877643 458889999999999996 5578888888999999999999964 444433 369999999999 4554
Q ss_pred CCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 661 LKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 661 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
++ +.+++|++|++++|.... . .....+++|+.|++++ +.+..++. ..+..+++|+.|++++|
T Consensus 446 ~~--~~l~~L~~L~Ls~N~l~~--i----p~~~~l~~L~~L~Ls~--N~l~~~~~--------~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 446 FS--LFLPRLQELYISRNKLKT--L----PDASLFPVLLVMKISR--NQLKSVPD--------GIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CC--CCCTTCCEEECCSSCCSS--C----CCGGGCTTCCEEECCS--SCCCCCCT--------TGGGGCTTCCEEECCSS
T ss_pred hc--ccCChhcEEECCCCccCc--C----CCcccCccCCEEecCC--CccCCcCH--------HHHhcCcccCEEEecCC
Confidence 43 477899999999997542 1 1245689999999999 67777766 23467899999999997
Q ss_pred CCCccc
Q 044882 741 PNLERL 746 (815)
Q Consensus 741 ~~l~~l 746 (815)
+-....
T Consensus 508 ~~~~~~ 513 (549)
T 2z81_A 508 PWDCSC 513 (549)
T ss_dssp CBCCCH
T ss_pred CccCCC
Confidence 654333
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=316.83 Aligned_cols=480 Identities=16% Similarity=0.122 Sum_probs=244.9
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccc-hhhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~ 200 (815)
++++.|.+.++. +....+..|..+++|++|+|++|.++.+ |..|+++++|++|++++|.++.+| ..++++++
T Consensus 28 ~~l~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFNP------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSCC------CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccCCc------cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 356666655443 3333344566777777777777777766 355677777777777777777665 56777777
Q ss_pred CcEEeccCCccccccch-hhcCcCCcceeeccCCCccc--ccccccccccccccccceeeccCCCCCccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCA-DMGNLAKLHHLKNSNTKSLE--EMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGT 277 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 277 (815)
|++|++++| .+..+|. .++++++|++|++++|. +. .+|..++++++|++|+..
T Consensus 102 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~---------------------- 157 (570)
T 2z63_A 102 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLS---------------------- 157 (570)
T ss_dssp CCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECT----------------------
T ss_pred ccccccccc-ccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCc----------------------
Confidence 777777777 5666554 46777777777777776 33 356667777777766321
Q ss_pred eeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCc----ccEEEeecCCCCCCc
Q 044882 278 LNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENL----EQFCISGYGGTKFPT 353 (815)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L----~~L~l~~~~~~~~p~ 353 (815)
+|..... ....+..+++| +.|+++++.+..++.
T Consensus 158 --------------------------------~n~l~~~-----------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 158 --------------------------------SNKIQSI-----------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (570)
T ss_dssp --------------------------------TSCCCEE-----------CGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred --------------------------------CCcccee-----------cHHHccchhccchhhhhcccCCCCceecCH
Confidence 1111000 00000011122 455666666655554
Q ss_pred cCCCCCCCCccEEEEecCCCCC-CCC-CCCCCCCcCeeeeccC-----CCceecCccccCCCCCCCCCCcceeeeccccc
Q 044882 354 WFGDSSFSNLVTLEFENCDMCT-ALP-SVGQLPSLKHLAVCGM-----SRVKRLGSEFYGNDSPIPFLCLETLRFEDMQE 426 (815)
Q Consensus 354 ~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~l~~~-----~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 426 (815)
.... ..+|++|++++|.... .++ .+..++.++.+.+... ..+..+....+.. ..-..++.+.+.+...
T Consensus 195 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~---l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 195 GAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG---LCNLTIEEFRLAYLDY 269 (570)
T ss_dssp TTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG---GGGSEEEEEEEEETTE
T ss_pred HHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc---ccccchhhhhhhcchh
Confidence 4332 3479999999875332 122 3445555655544321 1112222111111 0011233444443322
Q ss_pred cccccccCCCCCcccCCCcceeeeccCcccccCCC---CCCCCccEEEEecccCccccCCCCCCcceEEeCCCCcccccc
Q 044882 427 WEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP---EHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKS 503 (815)
Q Consensus 427 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 503 (815)
+..... ..+..+++|+.|++++| .++ .+| ..+ +|+.|++.+|.........+++|+.+++
T Consensus 270 ~~~~~~----~~~~~l~~L~~L~l~~~-~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l---------- 332 (570)
T 2z63_A 270 YLDDII----DLFNCLTNVSSFSLVSV-TIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTF---------- 332 (570)
T ss_dssp EESCST----TTTGGGTTCSEEEEESC-EEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEE----------
T ss_pred hhhhch----hhhcCcCcccEEEecCc-cch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeC----------
Confidence 222222 33446778888888874 555 455 233 6777777776543222233444555544
Q ss_pred ccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccc
Q 044882 504 AAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEG 583 (815)
Q Consensus 504 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n 583 (815)
++|......+. ..+++|++|++++|.... +. .. .-.+.++++|+.+++++|
T Consensus 333 -----------------~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~-~~--~~-----~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 333 -----------------TSNKGGNAFSE----VDLPSLEFLDLSRNGLSF-KG--CC-----SQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp -----------------ESCBSCCBCCC----CBCTTCCEEECCSSCCBE-EE--EE-----EHHHHTCSCCCEEECCSC
T ss_pred -----------------cCCcccccccc----ccCCCCCEEeCcCCccCc-cc--cc-----cccccccCccCEEECCCC
Confidence 44443322222 344555555555542110 00 00 001233445555555555
Q ss_pred ccccCcccccCCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCC-CCC
Q 044882 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVEL-PSL 661 (815)
Q Consensus 584 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~ 661 (815)
.+.+..+. +..+++|++|++++|......+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|... ..+
T Consensus 384 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 384 GVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp SEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 54443333 5555555555555554333332 23445555555555555555555555555555555555555322 122
Q ss_pred CC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 662 KE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 662 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
|. .+.+++|++|++++|...... +..+..+++|+.|++++ +.+..++. ..+..+++|+.|++++|
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~--n~l~~~~~--------~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLS----PTAFNSLSSLQVLNMAS--NQLKSVPD--------GIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCS--SCCSCCCT--------TTTTTCTTCCEEECCSS
T ss_pred hhhhhcccCCCEEECCCCccccCC----hhhhhcccCCCEEeCCC--CcCCCCCH--------HHhhcccCCcEEEecCC
Confidence 22 244555555555555433211 13455666666666666 34555544 23345667777777775
Q ss_pred C
Q 044882 741 P 741 (815)
Q Consensus 741 ~ 741 (815)
+
T Consensus 529 ~ 529 (570)
T 2z63_A 529 P 529 (570)
T ss_dssp C
T ss_pred c
Confidence 4
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=318.58 Aligned_cols=483 Identities=16% Similarity=0.143 Sum_probs=257.3
Q ss_pred CcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 229 (815)
+++++|++++|.++.++ .+|.++++|++|++++|.++.+| ..++++++|++|++++| .+..+| ..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccc
Confidence 46899999999998774 57899999999999999999775 67899999999999999 566555 6789999999999
Q ss_pred ccCCCccccccc-ccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeee
Q 044882 230 NSNTKSLEEMPV-GIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLL 308 (815)
Q Consensus 230 l~~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 308 (815)
+++|. +..+|. .++++++|++|+ +
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~------------------------------------------------------L 131 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELN------------------------------------------------------V 131 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEE------------------------------------------------------C
T ss_pred ccccc-cccCCCccccccccccEEe------------------------------------------------------c
Confidence 99987 666654 366666666663 2
Q ss_pred EEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCc-cCCCCCCCCc----cEEEEecCCCCCCCCCCCCC
Q 044882 309 RWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPT-WFGDSSFSNL----VTLEFENCDMCTALPSVGQL 383 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L----~~L~L~~~~~~~~l~~l~~l 383 (815)
++|...+. ..+..+..+++|+.|+++++.+..++. .+. .+++| +.|++++|.+....+.....
T Consensus 132 ~~n~l~~~----------~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~~~~~L~l~~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 132 AHNLIQSF----------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (570)
T ss_dssp CSSCCCCC----------CCCGGGGGCTTCCEEECTTSCCCEECGGGGH--HHHTCTTCCCEEECTTCCCCEECTTTTTT
T ss_pred CCCcccee----------cChhhhcccCCCCEEeCcCCccceecHHHcc--chhccchhhhhcccCCCCceecCHHHhcc
Confidence 22221000 011223445677778887777665543 222 24445 67777777766655533333
Q ss_pred CCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeec--cccccccccccCCCCCcccCC--CcceeeeccCcccccC
Q 044882 384 PSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFE--DMQEWEDWIPLRSGQGVEGFP--KLRELHILRCSKLKGT 459 (815)
Q Consensus 384 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~~ 459 (815)
.+|+.|++++|..-......... .+..++...+. .......... .....+..++ .++.+++.+++.+.+.
T Consensus 200 ~~L~~L~l~~n~~~~~~~~~~~~-----~l~~l~~~~l~~~~~~~~~~l~~-~~~~~~~~l~~l~l~~l~l~~~~~~~~~ 273 (570)
T 2z63_A 200 IRLHKLTLRNNFDSLNVMKTCIQ-----GLAGLEVHRLVLGEFRNEGNLEK-FDKSALEGLCNLTIEEFRLAYLDYYLDD 273 (570)
T ss_dssp CEEEEEEEESCCSCTTHHHHHHH-----TTTTCEEEEEEEEECCCCSSCEE-CCTTTTGGGGGSEEEEEEEEETTEEESC
T ss_pred CcceeEecccccccccchhhhhc-----CccccceeeeccccccCchhhhh-cchhhhccccccchhhhhhhcchhhhhh
Confidence 36777777765211000000000 12222222221 1000000000 0000011111 1233333333233322
Q ss_pred CCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCC
Q 044882 460 FPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNS 539 (815)
Q Consensus 460 lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 539 (815)
.|. .+..+++|+.+++.++.... +....... +|++|++++|... .+|. ..++
T Consensus 274 ~~~------------------~~~~l~~L~~L~l~~~~l~~---l~~~~~~~--~L~~L~l~~n~~~-~l~~----~~l~ 325 (570)
T 2z63_A 274 IID------------------LFNCLTNVSSFSLVSVTIER---VKDFSYNF--GWQHLELVNCKFG-QFPT----LKLK 325 (570)
T ss_dssp STT------------------TTGGGTTCSEEEEESCEECS---CCBCCSCC--CCSEEEEESCBCS-SCCB----CBCS
T ss_pred chh------------------hhcCcCcccEEEecCccchh---hhhhhccC--CccEEeeccCccc-ccCc----cccc
Confidence 221 11223333333333332110 00111111 5666677666533 4443 3566
Q ss_pred CcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCc--ccccCCCCCCceEEeccCCCcccccCCC
Q 044882 540 SLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS--RSGLHNLRQLQEISIRRCGNLVSFPEGG 617 (815)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 617 (815)
+|+.|++++|.....++ ...+++|+.+++++|.+.+.. +..+..+++|++|++++|.... ++..+
T Consensus 326 ~L~~L~l~~n~~~~~~~------------~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 392 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFS------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNF 392 (570)
T ss_dssp SCCEEEEESCBSCCBCC------------CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEE
T ss_pred ccCEEeCcCCccccccc------------cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccc
Confidence 77777777664332211 134556666666666665443 4556666777777777765333 33335
Q ss_pred CCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcCcccC
Q 044882 618 LPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHRF 695 (815)
Q Consensus 618 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l 695 (815)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|......+.. ..+++|++|++++|....... +..+..+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l 469 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL---PDIFTEL 469 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc---hhhhhcc
Confidence 666677777777776655444 34566677777777776433333322 455666666666665432111 1345556
Q ss_pred CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCC
Q 044882 696 SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 696 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
++|+.|++++ +.+..++. ..+..+++|+.|++++| .++.+++ .+..+++|++|++++|
T Consensus 470 ~~L~~L~l~~--n~l~~~~~--------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 470 RNLTFLDLSQ--CQLEQLSP--------TAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEECCC--CccccCCh--------hhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 6666666665 23333322 12344556666666663 3444433 4555566666666554
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-32 Score=306.01 Aligned_cols=436 Identities=17% Similarity=0.140 Sum_probs=218.2
Q ss_pred CcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..++++++|++|++++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 56777777777766654 4666677777777777776655 456667777777777776 56666665 6667777777
Q ss_pred cCCCcccc--cccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeee
Q 044882 231 SNTKSLEE--MPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLL 308 (815)
Q Consensus 231 ~~~~~l~~--~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 308 (815)
++|. +.. +|..++++++|++|+ +
T Consensus 98 ~~N~-l~~~~~p~~~~~l~~L~~L~------------------------------------------------------L 122 (520)
T 2z7x_B 98 SFNA-FDALPICKEFGNMSQLKFLG------------------------------------------------------L 122 (520)
T ss_dssp CSSC-CSSCCCCGGGGGCTTCCEEE------------------------------------------------------E
T ss_pred cCCc-cccccchhhhccCCcceEEE------------------------------------------------------e
Confidence 7666 332 445566666666553 3
Q ss_pred EEccCCCCCCCchhhHHHHHhhcCCCCCCc--ccEEEeecCC---CCCCccCCCCCCC-CccEEEEecCCCCCCCC--CC
Q 044882 309 RWTLSTDGSSSREAEIEKDVLNMLKPHENL--EQFCISGYGG---TKFPTWFGDSSFS-NLVTLEFENCDMCTALP--SV 380 (815)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~~~~~~~l~--~l 380 (815)
++|...+ ..+..+++| +.|+++++.+ ...|.++.. +. ....+++++|...+.++ .+
T Consensus 123 ~~n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 123 STTHLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp EESSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCC
T ss_pred cCcccch--------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhh
Confidence 3332210 011112233 5555555543 233444432 22 23355666777665554 46
Q ss_pred CCCCCcCeeeeccCCCc---eecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccc
Q 044882 381 GQLPSLKHLAVCGMSRV---KRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLK 457 (815)
Q Consensus 381 ~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 457 (815)
..+++|+.|++++|... ..+..... ....+++|+.|.+.++.-......... ... ..++|+.|++++| ++.
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~-~~~-~~~~L~~L~l~~n-~l~ 260 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILA---KLQTNPKLSNLTLNNIETTWNSFIRIL-QLV-WHTTVWYFSISNV-KLQ 260 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHH---GGGGCTTCCEEEEEEEEEEHHHHHHHH-HHH-HTSSCSEEEEEEE-EEE
T ss_pred hcccceeeccccccccccccceeecchh---hhccccchhhccccccccCHHHHHHHH-HHh-hhCcccEEEeecc-ccc
Confidence 67888888888776410 00000000 001133344443333211000000000 000 1224444444442 333
Q ss_pred cCCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcC-
Q 044882 458 GTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCG- 536 (815)
Q Consensus 458 ~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~- 536 (815)
+.+|..+... .....+.|+.+++++|.. .+|...+..
T Consensus 261 ~~~p~~~~~~----------------------------------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~ 298 (520)
T 2z7x_B 261 GQLDFRDFDY----------------------------------------SGTSLKALSIHQVVSDVF--GFPQSYIYEI 298 (520)
T ss_dssp SCCCCCCCCC----------------------------------------CSCCCCEEEEEEEEECCC--CSCTHHHHHH
T ss_pred Cccccchhhc----------------------------------------ccccCceeEeccccccce--ecchhhhhcc
Confidence 3333221000 000114455666666654 444211101
Q ss_pred -CCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccC
Q 044882 537 -TNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE 615 (815)
Q Consensus 537 -~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 615 (815)
.-.+|+.|++++|.. .+.. ....+++|++|++++|......|.
T Consensus 299 ~~~~~L~~L~l~~n~l----------------------------------~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 299 FSNMNIKNFTVSGTRM----------------------------------VHML--CPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp HHTCCCSEEEEESSCC----------------------------------CCCC--CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred cccCceeEEEcCCCcc----------------------------------cccc--chhhCCcccEEEeECCccChhhhh
Confidence 114566666666532 1100 012345555555555554444555
Q ss_pred CCCCCCCcceEEeccccccc--ccccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcC
Q 044882 616 GGLPCAKLTRLEISSCKRLE--ALPKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRG 691 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 691 (815)
.+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.....+|. ...+++|++|++++|......+
T Consensus 343 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 416 (520)
T 2z7x_B 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF------ 416 (520)
T ss_dssp TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG------
T ss_pred hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh------
Confidence 55555556666665555543 3344455566666666666533322332 2345566666666665332111
Q ss_pred cccC-CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcccccc-CCCCCCCCeeeeCCCC
Q 044882 692 FHRF-SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSS-IVDLQNLASLYLGDCP 765 (815)
Q Consensus 692 ~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~i~~c~ 765 (815)
..+ ++|+.|++++ +.+..+|. .+..+++|+.|++++ +.++.+|.. +..+++|++|++++++
T Consensus 417 -~~l~~~L~~L~Ls~--N~l~~ip~---------~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 417 -RCLPPRIKVLDLHS--NKIKSIPK---------QVVKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp -GSCCTTCCEEECCS--SCCCCCCG---------GGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hhhcccCCEEECCC--Ccccccch---------hhhcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCC
Confidence 112 5677777776 45556654 113567788888888 467777775 7778888888888764
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-33 Score=318.35 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=72.7
Q ss_pred CcccEEEcCCCCcc-ccCccccCCccCCEEecCCCCCC-------------ccchhh---------------------h-
Q 044882 153 QRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNLSGTEIR-------------TLPESV---------------------N- 196 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L~~~~i~-------------~lp~~i---------------------~- 196 (815)
.+++.|+|+++.+. .+|.++++|++|++|+|++|.+. .+|... +
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 57999999999998 78999999999999999999652 222111 1
Q ss_pred ------------------ccCCCcEEeccC-CccccccchhhcCcCCcceeeccCCCcccc------------------c
Q 044882 197 ------------------KLYNLHSLLLED-CDRLKKLCADMGNLAKLHHLKNSNTKSLEE------------------M 239 (815)
Q Consensus 197 ------------------~L~~L~~L~L~~-~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------------~ 239 (815)
....++.+.+.. +..+..+|..++++++|++|++++|. +.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccC
Confidence 011122222222 22566699999999999999999999 655 8
Q ss_pred ccccc--ccccccccc
Q 044882 240 PVGIG--RLTSLQTLC 253 (815)
Q Consensus 240 p~~i~--~L~~L~~L~ 253 (815)
|..++ ++++|++|+
T Consensus 240 p~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVE 255 (636)
T ss_dssp TSCCCGGGCTTCCEEE
T ss_pred chhhhhcccCCCCEEE
Confidence 88877 777777663
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.3e-33 Score=318.15 Aligned_cols=370 Identities=16% Similarity=0.176 Sum_probs=248.5
Q ss_pred CCCCccchhhhccCCCcEEeccCCccccc------------------cchhhc--CcCCcceeeccCCCccccccccccc
Q 044882 186 TEIRTLPESVNKLYNLHSLLLEDCDRLKK------------------LCADMG--NLAKLHHLKNSNTKSLEEMPVGIGR 245 (815)
Q Consensus 186 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~p~~i~~ 245 (815)
|.++.+|..++++++|++|+|++| .+.. +|..++ ++++|++|++++|...+.+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 455558999999999999999999 5665 899888 9999999999999878889988888
Q ss_pred ccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHH
Q 044882 246 LTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIE 325 (815)
Q Consensus 246 L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 325 (815)
+++|+.|+...... + . . ..++. .
T Consensus 514 L~~L~~L~Ls~N~~-----l------------------s---g--~~iP~-----------------------------~ 536 (876)
T 4ecn_A 514 LPELQSLNIACNRG-----I------------------S---A--AQLKA-----------------------------D 536 (876)
T ss_dssp CSSCCEEECTTCTT-----S------------------C---H--HHHHH-----------------------------H
T ss_pred CCCCCEEECcCCCC-----c------------------c---c--ccchH-----------------------------H
Confidence 88888884211100 0 0 0 00000 0
Q ss_pred HHHhh-cCCCCCCcccEEEeecCCCCCCc--cCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCc
Q 044882 326 KDVLN-MLKPHENLEQFCISGYGGTKFPT--WFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGS 402 (815)
Q Consensus 326 ~~~~~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~ 402 (815)
...+. .+..+++|+.|++++|.+..+|. ++. .+++|+.|++++|.+. .+|.++.+++|+.|++++|.. ..++.
T Consensus 537 i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l-~~lp~ 612 (876)
T 4ecn_A 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQI-EEIPE 612 (876)
T ss_dssp HHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCC-SCCCT
T ss_pred HHhhhhcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCcc-ccchH
Confidence 11111 44455677777777777777777 665 4788888888888876 666778888888888887742 22221
Q ss_pred cccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCC-cceeeeccCcccccCCCCCC-----CCccEEEEeccc
Q 044882 403 EFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPK-LRELHILRCSKLKGTFPEHL-----PALEMLVIEGCE 476 (815)
Q Consensus 403 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~~lp~~l-----~~L~~L~l~~~~ 476 (815)
. +..+++ |+.|++++ +.++ .+|..+ ++|+.|++++|.
T Consensus 613 ~-----------------------------------l~~l~~~L~~L~Ls~-N~L~-~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 613 D-----------------------------------FCAFTDQVEGLGFSH-NKLK-YIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp T-----------------------------------SCEECTTCCEEECCS-SCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred H-----------------------------------HhhccccCCEEECcC-CCCC-cCchhhhccccCCCCEEECcCCc
Confidence 1 114555 66666666 3455 455322 225555555543
Q ss_pred CccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhh
Q 044882 477 ELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIA 556 (815)
Q Consensus 477 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 556 (815)
... .++.++ ........++|+.|++++|... .+|...+ ..+++|+.|++++|. ++.++
T Consensus 656 l~g-~ip~l~------------------~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~-~~l~~L~~L~Ls~N~-L~~ip 713 (876)
T 4ecn_A 656 IGS-EGRNIS------------------CSMDDYKGINASTVTLSYNEIQ-KFPTELF-ATGSPISTIILSNNL-MTSIP 713 (876)
T ss_dssp TTT-TSSSCS------------------SCTTTCCCCCEEEEECCSSCCC-SCCHHHH-HTTCCCSEEECCSCC-CSCCC
T ss_pred CCC-ccccch------------------hhhccccCCCcCEEEccCCcCC-ccCHHHH-ccCCCCCEEECCCCc-CCccC
Confidence 211 000000 0000001146888888888644 6676553 578899999999884 44444
Q ss_pred ccccccccceEecccccccccccccccccccCcccccC--CCCCCceEEeccCCCcccccCCCCCCCCcceEEecc----
Q 044882 557 AVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLH--NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISS---- 630 (815)
Q Consensus 557 ~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~---- 630 (815)
...+. ... -.+.+|++|+.|++++|.+. .+|..+. .+++|+.|+|++|.... +|..+..+++|+.|+|++
T Consensus 714 ~~~~~-~~~-~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 714 ENSLK-PKD-GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp TTSSS-CTT-SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred hHHhc-ccc-ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 33221 000 01345668899999999888 5566776 89999999999997554 888888999999999976
Q ss_pred --cccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchh
Q 044882 631 --CKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIW 682 (815)
Q Consensus 631 --~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 682 (815)
|.+.+.+|..+.++++|+.|++++|.. +.+|.. ..++|+.|++++|+...
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 777888899999999999999999954 777765 44799999999997543
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=2.7e-32 Score=313.92 Aligned_cols=417 Identities=15% Similarity=0.181 Sum_probs=225.2
Q ss_pred CcccEEEcCCCCcc-ccCccccCCccCCEEec-CCCCCC-ccchh-----------------------------------
Q 044882 153 QRLRAFSLRGYHIF-ELPDSIGDLRYLRYLNL-SGTEIR-TLPES----------------------------------- 194 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~L-~~~~i~-~lp~~----------------------------------- 194 (815)
.+++.|+|+++.+. .+|.+|++|++|++|+| ++|.+. ..|-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999998 78999999999999999 777542 11100
Q ss_pred -----h-----------hccCCCcEEeccC--CccccccchhhcCcCCcceeeccCCCcccc------------------
Q 044882 195 -----V-----------NKLYNLHSLLLED--CDRLKKLCADMGNLAKLHHLKNSNTKSLEE------------------ 238 (815)
Q Consensus 195 -----i-----------~~L~~L~~L~L~~--~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~------------------ 238 (815)
+ .....++.+.+.. | .+..+|..+++|++|++|++++|. +..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccC-cccchhHHHhcCCCCCEEECcCCc-CCCCccccccccccccccccc
Confidence 0 1112333344433 4 566699999999999999999998 555
Q ss_pred cccccc--cccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCC
Q 044882 239 MPVGIG--RLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDG 316 (815)
Q Consensus 239 ~p~~i~--~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 316 (815)
+|..++ ++++|+.|+...... ....+..+..+++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l------------------------------~~~iP~~l~~L~~-------------- 516 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPN------------------------------MTQLPDFLYDLPE-------------- 516 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTT------------------------------CCSCCGGGGGCSS--------------
T ss_pred CChhhhhccCCCCCEEECcCCCC------------------------------CccChHHHhCCCC--------------
Confidence 787776 777777763221100 0000111222233
Q ss_pred CCCchhhHHHHHhhcCCCCCCcccEEEeecC-CC--CCCccCC-----CCCCCCccEEEEecCCCCCCCCC---CCCCCC
Q 044882 317 SSSREAEIEKDVLNMLKPHENLEQFCISGYG-GT--KFPTWFG-----DSSFSNLVTLEFENCDMCTALPS---VGQLPS 385 (815)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~--~~p~~~~-----~~~l~~L~~L~L~~~~~~~~l~~---l~~l~~ 385 (815)
|+.|++++|. +. .+|..+. ...+++|+.|++++|.+. .+|. ++.+++
T Consensus 517 ---------------------L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 517 ---------------------LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp ---------------------CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred ---------------------CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 3333333332 22 1232111 013456777777777666 4443 666667
Q ss_pred cCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCCCC
Q 044882 386 LKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLP 465 (815)
Q Consensus 386 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~ 465 (815)
|+.|++++|.. ..++ .+..+++|+.|++++ +.+. .+|..+.
T Consensus 575 L~~L~Ls~N~l-~~lp------------------------------------~~~~L~~L~~L~Ls~-N~l~-~lp~~l~ 615 (876)
T 4ecn_A 575 LGLLDCVHNKV-RHLE------------------------------------AFGTNVKLTDLKLDY-NQIE-EIPEDFC 615 (876)
T ss_dssp CCEEECTTSCC-CBCC------------------------------------CCCTTSEESEEECCS-SCCS-CCCTTSC
T ss_pred CCEEECCCCCc-ccch------------------------------------hhcCCCcceEEECcC-Cccc-cchHHHh
Confidence 77777766531 1221 111567777777777 4555 5553221
Q ss_pred CccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccc-cceEEEeccCCcccCchhhhcCCCCCcceE
Q 044882 466 ALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSV-LKKIEIRECDALKSLPEAWMCGTNSSLEDM 544 (815)
Q Consensus 466 ~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 544 (815)
.+ ++ |++|++++|. +..+|..+.....++|+.|
T Consensus 616 ~l---------------------------------------------~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 616 AF---------------------------------------------TDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp EE---------------------------------------------CTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEE
T ss_pred hc---------------------------------------------cccCCEEECcCCC-CCcCchhhhccccCCCCEE
Confidence 11 22 4444444443 2233433211122335566
Q ss_pred EEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCC-----
Q 044882 545 SIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLP----- 619 (815)
Q Consensus 545 ~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~----- 619 (815)
++++|.....++ .++..+ ....+.+|+.|++++|.+....+..+..+++|+.|++++|... .+|.....
T Consensus 650 ~Ls~N~l~g~ip--~l~~~l---~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 650 DFSYNKIGSEGR--NISCSM---DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723 (876)
T ss_dssp ECCSSCTTTTSS--SCSSCT---TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSC
T ss_pred ECcCCcCCCccc--cchhhh---ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccc
Confidence 665554322211 011011 0112345666666666666443333446777777777777544 55554433
Q ss_pred ---CCCcceEEecccccccccccccC--CCCCcCcEEecCCCCCCCCCC-CCCCCCCceEEEcCCcchhhhhhhcCcCcc
Q 044882 620 ---CAKLTRLEISSCKRLEALPKGLH--NLTSLQELTIGRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFH 693 (815)
Q Consensus 620 ---l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 693 (815)
+++|++|+|++|.+. .+|..+. .+++|+.|++++|. +..+|. .+.+++|+.|++++|+.+.
T Consensus 724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls----------- 790 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAE----------- 790 (876)
T ss_dssp CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTT-----------
T ss_pred ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCcc-----------
Confidence 227777777777755 5666665 77777777777773 333443 2455666666666553111
Q ss_pred cCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCC
Q 044882 694 RFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 694 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 765 (815)
+ +.....+|. .+..+++|+.|+|++| .++.+|..+. ++|+.|+|++|+
T Consensus 791 -----------~-N~l~~~ip~---------~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 791 -----------G-NRILRQWPT---------GITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp -----------C-CBCCCCCCT---------TGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCT
T ss_pred -----------c-ccccccChH---------HHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCC
Confidence 0 111122221 2344566666666663 3466665543 566677776653
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=5.8e-31 Score=302.71 Aligned_cols=98 Identities=26% Similarity=0.312 Sum_probs=65.5
Q ss_pred cccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccch-hhcCcCCcceeec
Q 044882 154 RLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLKN 230 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l 230 (815)
.+++|||++|.|+.+| .+|.++++|++|+|++|+|+.+| .+|++|++|++|+|++| .+..+|. .|++|++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEEC
Confidence 4677777777777664 45677777777777777777665 45677777777777776 5666654 3567777777777
Q ss_pred cCCCcccccccc-ccccccccccc
Q 044882 231 SNTKSLEEMPVG-IGRLTSLQTLC 253 (815)
Q Consensus 231 ~~~~~l~~~p~~-i~~L~~L~~L~ 253 (815)
++|. +..+|.. ++++++|++|+
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKELN 154 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEE
T ss_pred CCCc-CCCCChhhhhcCcccCeec
Confidence 7776 5555544 66666666664
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.3e-30 Score=293.32 Aligned_cols=224 Identities=14% Similarity=0.149 Sum_probs=117.7
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCch-hhhccccccccceEecccccccccccccccccccCcccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLT-YIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSG 592 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~ 592 (815)
+|++|++++|...+.+|..++....++|+.|.+.++..-. .++...+. . +....+|+.+++++|.+.... .
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~-~-----~~~~~~L~~L~l~~n~~~~~~--~ 348 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY-S-----VFAEMNIKMLSISDTPFIHMV--C 348 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHH-H-----HHHTCCCSEEEEESSCCCCCC--C
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhh-h-----hhccCcceEEEccCCCccccc--C
Confidence 6777777777655556554321112344444433321110 11111000 0 001123455555555443221 1
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc--ccccccCCCCCcCcEEecCCCCCCCCCCC--CCCC
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE--ALPKGLHNLTSLQELTIGRGVELPSLKED--GLPT 668 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 668 (815)
...+++|++|++++|......|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.....++.. ..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 1456777777777777666666677777777777777777654 33455677777777777777433324432 4556
Q ss_pred CCceEEEcCCcchhhhhhhcCcCcccC-CCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcccc
Q 044882 669 NLQSLTIEGNMEIWKSMIERGRGFHRF-SSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLS 747 (815)
Q Consensus 669 ~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 747 (815)
+|++|++++|..... .+..+ ++|+.|++++ +.+..+|. .. ..+++|+.|++++ +.++.+|
T Consensus 429 ~L~~L~l~~n~l~~~-------~~~~l~~~L~~L~L~~--N~l~~ip~--------~~-~~l~~L~~L~L~~-N~l~~l~ 489 (562)
T 3a79_B 429 SILVLNLSSNMLTGS-------VFRCLPPKVKVLDLHN--NRIMSIPK--------DV-THLQALQELNVAS-NQLKSVP 489 (562)
T ss_dssp TCCEEECCSSCCCGG-------GGSSCCTTCSEEECCS--SCCCCCCT--------TT-TSSCCCSEEECCS-SCCCCCC
T ss_pred cCCEEECCCCCCCcc-------hhhhhcCcCCEEECCC--CcCcccCh--------hh-cCCCCCCEEECCC-CCCCCCC
Confidence 677777766654321 12222 4566666665 34555554 11 2445666666665 4455555
Q ss_pred cc-CCCCCCCCeeeeCCC
Q 044882 748 SS-IVDLQNLASLYLGDC 764 (815)
Q Consensus 748 ~~-~~~l~~L~~L~i~~c 764 (815)
.. +..+++|++|+++++
T Consensus 490 ~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 490 DGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp TTSTTTCTTCCCEECCSC
T ss_pred HHHHhcCCCCCEEEecCC
Confidence 54 555666666666554
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.6e-31 Score=292.95 Aligned_cols=452 Identities=15% Similarity=0.099 Sum_probs=307.3
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 233 (815)
++|++++|+++.+|..+. ++|++|++++|.+..+| ..++++++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 689999999999998876 89999999999999886 78999999999999999 56555 788999999999999999
Q ss_pred CcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccC
Q 044882 234 KSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLS 313 (815)
Q Consensus 234 ~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 313 (815)
. +..+|.. .+++|
T Consensus 80 ~-l~~lp~~--~l~~L---------------------------------------------------------------- 92 (520)
T 2z7x_B 80 K-LVKISCH--PTVNL---------------------------------------------------------------- 92 (520)
T ss_dssp C-CCEEECC--CCCCC----------------------------------------------------------------
T ss_pred c-eeecCcc--ccCCc----------------------------------------------------------------
Confidence 7 6566543 33333
Q ss_pred CCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCC--CCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCc--Cee
Q 044882 314 TDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTK--FPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSL--KHL 389 (815)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L--~~L 389 (815)
++|++++|.+.. +|..+. .+++|++|++++|.+.. ..+..+++| +.|
T Consensus 93 -------------------------~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 93 -------------------------KHLDLSFNAFDALPICKEFG--NMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV 143 (520)
T ss_dssp -------------------------SEEECCSSCCSSCCCCGGGG--GCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred -------------------------cEEeccCCccccccchhhhc--cCCcceEEEecCcccch--hhccccccceeeEE
Confidence 333333343333 455555 47889999999888654 234555666 888
Q ss_pred eeccCCC--ceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----CC
Q 044882 390 AVCGMSR--VKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP----EH 463 (815)
Q Consensus 390 ~l~~~~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~ 463 (815)
++++|.. ....+. .+..++ . ....+++.++ .+.+.++ ..
T Consensus 144 ~l~~n~l~~~~~~~~---------~l~~l~------------------------~-~~l~l~l~~n-~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 144 LLVLGETYGEKEDPE---------GLQDFN------------------------T-ESLHIVFPTN-KEFHFILDVSVKT 188 (520)
T ss_dssp EEEECTTTTSSCCTT---------TTTTCC------------------------E-EEEEEECCSS-SCCCCCCCCCCTT
T ss_pred Eeecccccccccccc---------cccccc------------------------c-ceEEEEeccC-cchhhhhhhhhhc
Confidence 8877642 111100 011110 0 1224455553 3333444 34
Q ss_pred CCCccEEEEecccCc---cccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhh-cCCCC
Q 044882 464 LPALEMLVIEGCEEL---LVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWM-CGTNS 539 (815)
Q Consensus 464 l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~ 539 (815)
+++|+.+++.+|... ....+.++. ....++|+.|++++|......+.... ....+
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~---------------------l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAK---------------------LQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHG---------------------GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred ccceeeccccccccccccceeecchhh---------------------hccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 566666766665310 000000000 01125788888888764433222211 01246
Q ss_pred CcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc-cccCCC---CCCceEEeccCCCcccccC
Q 044882 540 SLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR-SGLHNL---RQLQEISIRRCGNLVSFPE 615 (815)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~-~~~~~l---~~L~~L~l~~~~~l~~~~~ 615 (815)
+|++|++++|.....++. .+.......+++|+.++++.|.+ ..| ..+..+ ++|+.|++++|..... +
T Consensus 248 ~L~~L~l~~n~l~~~~p~-----~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~- 318 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDF-----RDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L- 318 (520)
T ss_dssp SCSEEEEEEEEEESCCCC-----CCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-
T ss_pred cccEEEeecccccCcccc-----chhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-c-
Confidence 899999999854333332 22111225677888888888887 333 344443 6799999999974332 2
Q ss_pred CCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC----CCCCCCCceEEEcCCcchhhhhhhcCcC
Q 044882 616 GGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE----DGLPTNLQSLTIEGNMEIWKSMIERGRG 691 (815)
Q Consensus 616 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 691 (815)
....+++|++|++++|.+.+.+|..+..+++|++|++++| .++.++. .+.+++|++|++++|....... . ..
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~-~--~~ 394 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK-K--GD 394 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG-G--CS
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccc-c--ch
Confidence 1257899999999999998888999999999999999999 4554322 3678999999999998654222 1 35
Q ss_pred cccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccC
Q 044882 692 FHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFP 771 (815)
Q Consensus 692 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~ 771 (815)
+..+++|+.|++++ +.....++. ..+++|+.|++++ +.++.+|..+..+++|++|++++| .++.+|
T Consensus 395 ~~~l~~L~~L~Ls~-N~l~~~~~~-----------~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 395 CSWTKSLLSLNMSS-NILTDTIFR-----------CLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp CCCCTTCCEEECCS-SCCCGGGGG-----------SCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCC
T ss_pred hccCccCCEEECcC-CCCCcchhh-----------hhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccC
Confidence 78899999999999 332233333 2337999999999 578899998889999999999995 788898
Q ss_pred CCC--CCCccceeeecCCcc
Q 044882 772 EKG--LPSSLLQLDIWGCPL 789 (815)
Q Consensus 772 ~~~--~~~~L~~L~i~~c~~ 789 (815)
... ..++|++|++++||-
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 742 357999999999873
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.8e-30 Score=298.72 Aligned_cols=517 Identities=17% Similarity=0.131 Sum_probs=300.6
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccch-hhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 233 (815)
++.+.++.+++++|..+. .++++|||++|.|+.+| .+|+++++|++|+|++| .+..+|. .|++|++|++|++++|
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC
Confidence 456777778889998764 48999999999999997 68999999999999999 7887765 5899999999999999
Q ss_pred Ccccccccc-cccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEcc
Q 044882 234 KSLEEMPVG-IGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTL 312 (815)
Q Consensus 234 ~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 312 (815)
+ +..+|.+ ++++++|++|+...... ..+ ....+.++++|+.|++++|.
T Consensus 111 ~-l~~l~~~~f~~L~~L~~L~Ls~N~l------------------------~~l------~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 111 P-IQSLALGAFSGLSSLQKLVAVETNL------------------------ASL------ENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp C-CCEECGGGGTTCTTCCEEECTTSCC------------------------CCS------TTCCCTTCTTCCEEECCSSC
T ss_pred c-CCCCCHHHhcCCCCCCEEECCCCcC------------------------CCC------ChhhhhcCcccCeeccccCc
Confidence 8 8888865 78999999884322110 000 01113444555555555554
Q ss_pred CCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCcc-CCC--CCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 044882 313 STDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTW-FGD--SSFSNLVTLEFENCDMCTALPSVGQLPSLKHL 389 (815)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~--~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 389 (815)
..... ....+..+++|+.|++++|.+..++.. +.. ........++++.+.+....+.......+..+
T Consensus 160 l~~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l 229 (635)
T 4g8a_A 160 IQSFK----------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 229 (635)
T ss_dssp CCCCC----------CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred cccCC----------CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhh
Confidence 31100 011122334444444444444333211 100 00011223334443333222222222233333
Q ss_pred eeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeecc--C---cccccCCC---
Q 044882 390 AVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILR--C---SKLKGTFP--- 461 (815)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~--c---~~l~~~lp--- 461 (815)
.+.++.....+....+. .++.++...+.. + ..+....+
T Consensus 230 ~l~~n~~~~~~~~~~~~----------------------------------~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 230 TLRNNFDSLNVMKTCIQ----------------------------------GLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp EEESCCSSHHHHHHHHH----------------------------------TTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhcccccccccchhhc----------------------------------CCccccccccccccccccccccccccccc
Confidence 33332111111000000 112222111110 0 00000000
Q ss_pred CCCCCccEEEEecccC------ccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhc
Q 044882 462 EHLPALEMLVIEGCEE------LLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMC 535 (815)
Q Consensus 462 ~~l~~L~~L~l~~~~~------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 535 (815)
.....+....+..... ....+....+++.+.+.++...... ......+++.|++.+|... .++.
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~-~~~~---- 345 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-----DFSYNFGWQHLELVNCKFG-QFPT---- 345 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-----GGGSCCCCSEEEEESCEES-SCCC----
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-----ccccchhhhhhhccccccc-CcCc----
Confidence 0111122222111100 0111112333344443333221110 0112245667777766432 2221
Q ss_pred CCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccccccc--CcccccCCCCCCceEEeccCCCcccc
Q 044882 536 GTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS--SSRSGLHNLRQLQEISIRRCGNLVSF 613 (815)
Q Consensus 536 ~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~ 613 (815)
..+..|+.+.+..+....... ..++++|+.++++.|.+.. ..+..+..+.+|+.|++..+. ....
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~------------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~ 412 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFS------------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITM 412 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCC------------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEE
T ss_pred ccchhhhhcccccccCCCCcc------------cccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccc
Confidence 345667777777664322111 2245667777777776643 334455678899999999886 4455
Q ss_pred cCCCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcC
Q 044882 614 PEGGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRG 691 (815)
Q Consensus 614 ~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~ 691 (815)
+..+..+++|+.+++.+|......+ ..+..+++++.++++.|......+.. ..+++|+.|++++|.......+ ..
T Consensus 413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~---~~ 489 (635)
T 4g8a_A 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DI 489 (635)
T ss_dssp CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SC
T ss_pred cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCc---hh
Confidence 6677888999999999888766554 35678899999999998544333332 5778999999999976553332 47
Q ss_pred cccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCccc
Q 044882 692 FHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYF 770 (815)
Q Consensus 692 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l 770 (815)
+..+++|+.|++++ +.+..+++ ..|..+++|++|+|++ +.++.+++ .+..+++|++|++++ ++++.+
T Consensus 490 ~~~l~~L~~L~Ls~--N~L~~l~~--------~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~ 557 (635)
T 4g8a_A 490 FTELRNLTFLDLSQ--CQLEQLSP--------TAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSL-NHIMTS 557 (635)
T ss_dssp CTTCTTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTT-SCCCBC
T ss_pred hhhccccCEEECCC--CccCCcCh--------HHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCC-CcCCCC
Confidence 88899999999998 57777765 4557789999999999 57877765 688999999999998 578777
Q ss_pred CCC---CCCCccceeeecCCc
Q 044882 771 PEK---GLPSSLLQLDIWGCP 788 (815)
Q Consensus 771 ~~~---~~~~~L~~L~i~~c~ 788 (815)
+.. .++++|+.|+++++|
T Consensus 558 ~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 558 KKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CSSCTTCCCTTCCEEECTTCC
T ss_pred CHHHHHhhhCcCCEEEeeCCC
Confidence 663 345789999998765
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=2.9e-30 Score=290.52 Aligned_cols=437 Identities=18% Similarity=0.118 Sum_probs=230.9
Q ss_pred ccccccCCCcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchhhcCc
Q 044882 145 ILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNL 222 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 222 (815)
+|..+. ++|++|++++|.++.+| .+|+++++|++|++++|.++.+ |..++++++|++|++++| .+..+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--cc
Confidence 444443 67888888888888775 5788888888888888888876 577888888888888888 67788876 78
Q ss_pred CCcceeeccCCCcccccc--cccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCC
Q 044882 223 AKLHHLKNSNTKSLEEMP--VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGK 300 (815)
Q Consensus 223 ~~L~~L~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 300 (815)
++|++|++++|. +..+| ..++++++|++|+........ . .+..+
T Consensus 121 ~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~--------------------------------~~~~l 166 (562)
T 3a79_B 121 ASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L--------------------------------DLLPV 166 (562)
T ss_dssp TTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-T--------------------------------TTGGG
T ss_pred ccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-C--------------------------------chhhh
Confidence 888888888887 55543 567777777777432211000 0 01111
Q ss_pred cCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCC--C-CCCccCCCCCCCCccEEEEecCCCCCCC
Q 044882 301 KNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGG--T-KFPTWFGDSSFSNLVTLEFENCDMCTAL 377 (815)
Q Consensus 301 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l 377 (815)
.+| +|+.|+++++.. . ..|.++.......+ .+++++|.+...+
T Consensus 167 ~~L---------------------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~ 212 (562)
T 3a79_B 167 AHL---------------------------------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQ 212 (562)
T ss_dssp TTS---------------------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCC
T ss_pred hhc---------------------------------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhh
Confidence 122 224444444433 1 12332221001111 4455566655544
Q ss_pred C--CCCCCCCcCeeeeccCCC-ceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCc
Q 044882 378 P--SVGQLPSLKHLAVCGMSR-VKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCS 454 (815)
Q Consensus 378 ~--~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~ 454 (815)
+ .+..+++|+.+++++|.. ...+.... .. ....++|+.+.+.++..-........ ... ..++|++|++++|
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~--l~~l~~L~~L~L~~~~l~~~~~~~~~-~~~-~~~~L~~L~l~~n- 286 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFL-SE--LTRGPTLLNVTLQHIETTWKCSVKLF-QFF-WPRPVEYLNIYNL- 286 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHHHHH-HH--HHSCSSCEEEEEEEEEECHHHHHHHH-HHH-TTSSEEEEEEEEE-
T ss_pred hhhcccccceEEEecccccccccchHHHHH-HH--HhccCcceEEEecCCcCcHHHHHHHH-Hhh-hcccccEEEEecc-
Confidence 4 345667777777766521 00000000 00 01145566666554321110000000 000 2358999999984
Q ss_pred ccccCCCCCC-----CCccEEEEecccCccccCC--------CCCCcceEEeCCCCccccccccCCCCCCccccceEEEe
Q 044882 455 KLKGTFPEHL-----PALEMLVIEGCEELLVSVT--------SLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIR 521 (815)
Q Consensus 455 ~l~~~lp~~l-----~~L~~L~l~~~~~l~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 521 (815)
.+.+.+|..+ ++|+.|.+.++......++ ...+++.|+++++...... .....++|++|+++
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV-----CPPSPSSFTFLNFT 361 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC-----CCSSCCCCCEEECC
T ss_pred EeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc-----CccCCCCceEEECC
Confidence 6777788655 7777777765543222111 0134666666665432110 00223556666666
Q ss_pred ccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcc-cccCCCCCCc
Q 044882 522 ECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSR-SGLHNLRQLQ 600 (815)
Q Consensus 522 ~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~-~~~~~l~~L~ 600 (815)
+|...+..|..+ ..+++|+.|++++|. ++.++. +| -.+.++++|+.+++++|.+.+..| ..+..+++|+
T Consensus 362 ~n~l~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~--~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 362 QNVFTDSVFQGC--STLKRLQTLILQRNG-LKNFFK--VA-----LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp SSCCCTTTTTTC--CSCSSCCEEECCSSC-CCBTTH--HH-----HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCccccchhhhh--cccCCCCEEECCCCC-cCCccc--ch-----hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 665544444444 556666666666652 221110 00 012344555555666665555222 3355556666
Q ss_pred eEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC--CCCCCCCceEEEcCC
Q 044882 601 EISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE--DGLPTNLQSLTIEGN 678 (815)
Q Consensus 601 ~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~ 678 (815)
+|++++|.....+|..+. ++|++|++++|.+. .+|..+..+++|++|++++| .++.+|. .+.+++|+.|++++|
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCC
Confidence 666666654444444332 45666666666533 45554445666666666665 3334443 234555555666555
Q ss_pred c
Q 044882 679 M 679 (815)
Q Consensus 679 ~ 679 (815)
+
T Consensus 508 ~ 508 (562)
T 3a79_B 508 P 508 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=9.4e-30 Score=275.76 Aligned_cols=416 Identities=20% Similarity=0.190 Sum_probs=178.4
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCC-ccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIR-TLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
+..+|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++++.+|+++++.+|.. .+|++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 456788888888888888888888888888888888776 7788888877775555555511 3456666
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|. +..+|... ++|++| +++
T Consensus 78 l~~~~-l~~lp~~~---~~L~~L------------------------------------------------------~l~ 99 (454)
T 1jl5_A 78 LNNLG-LSSLPELP---PHLESL------------------------------------------------------VAS 99 (454)
T ss_dssp CTTSC-CSCCCSCC---TTCSEE------------------------------------------------------ECC
T ss_pred ecCCc-cccCCCCc---CCCCEE------------------------------------------------------Ecc
Confidence 66665 44444311 222222 222
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHL 389 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 389 (815)
+|...+ +. ..+++|+.|+++++.+..+|.. .++|++|++++|.+.+ +|.++.+++|++|
T Consensus 100 ~n~l~~-------------lp--~~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L 158 (454)
T 1jl5_A 100 CNSLTE-------------LP--ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKII 158 (454)
T ss_dssp SSCCSS-------------CC--CCCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEE
T ss_pred CCcCCc-------------cc--cccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEE
Confidence 221100 00 0013444444555444444432 2456666666665543 4456666666666
Q ss_pred eeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC--CCCCCc
Q 044882 390 AVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP--EHLPAL 467 (815)
Q Consensus 390 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp--~~l~~L 467 (815)
++++|. ++.++. .+++|++|++++ ++++ .+| ..+++|
T Consensus 159 ~l~~N~-l~~lp~--------------------------------------~~~~L~~L~L~~-n~l~-~l~~~~~l~~L 197 (454)
T 1jl5_A 159 DVDNNS-LKKLPD--------------------------------------LPPSLEFIAAGN-NQLE-ELPELQNLPFL 197 (454)
T ss_dssp ECCSSC-CSCCCC--------------------------------------CCTTCCEEECCS-SCCS-SCCCCTTCTTC
T ss_pred ECCCCc-CcccCC--------------------------------------CcccccEEECcC-CcCC-cCccccCCCCC
Confidence 666552 221110 122344444443 2333 122 112222
Q ss_pred cEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEe
Q 044882 468 EMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIR 547 (815)
Q Consensus 468 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 547 (815)
+.|++++| ... .++ ..+++|++|++++|. +..+|. + ..+++|++|+++
T Consensus 198 ~~L~l~~N---------------------~l~------~l~-~~~~~L~~L~l~~n~-l~~lp~-~--~~l~~L~~L~l~ 245 (454)
T 1jl5_A 198 TAIYADNN---------------------SLK------KLP-DLPLSLESIVAGNNI-LEELPE-L--QNLPFLTTIYAD 245 (454)
T ss_dssp CEEECCSS---------------------CCS------SCC-CCCTTCCEEECCSSC-CSSCCC-C--TTCTTCCEEECC
T ss_pred CEEECCCC---------------------cCC------cCC-CCcCcccEEECcCCc-CCcccc-c--CCCCCCCEEECC
Confidence 33322222 110 000 111356666666664 335553 2 678888999998
Q ss_pred ccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEE
Q 044882 548 QCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLE 627 (815)
Q Consensus 548 ~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 627 (815)
+|. ++.++. ..++|+.+++++|.+.+. |.. +++|++|++++|... .+|.. .++|++|+
T Consensus 246 ~N~-l~~l~~-------------~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~-~l~~~---~~~L~~L~ 303 (454)
T 1jl5_A 246 NNL-LKTLPD-------------LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFS-GLSEL---PPNLYYLN 303 (454)
T ss_dssp SSC-CSSCCS-------------CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS-EESCC---CTTCCEEE
T ss_pred CCc-CCcccc-------------cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccC-cccCc---CCcCCEEE
Confidence 874 222221 124566666666666652 222 367888888887633 33321 15788888
Q ss_pred ecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccC
Q 044882 628 ISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCD 707 (815)
Q Consensus 628 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~ 707 (815)
+++|.+.+ ++. ..++|++|++++| .++.+|.. +++|++|++++|.... . +. .+++|+.|++++
T Consensus 304 l~~N~l~~-i~~---~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~l~~--l---p~---~l~~L~~L~L~~-- 366 (454)
T 1jl5_A 304 ASSNEIRS-LCD---LPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNHLAE--V---PE---LPQNLKQLHVEY-- 366 (454)
T ss_dssp CCSSCCSE-ECC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSCCSC--C---CC---CCTTCCEEECCS--
T ss_pred CcCCcCCc-ccC---CcCcCCEEECCCC-cccccccc--CCcCCEEECCCCcccc--c---cc---hhhhccEEECCC--
Confidence 88877543 221 1247788888887 44445442 5777888887775332 1 11 356777777776
Q ss_pred CCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCC
Q 044882 708 DDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGC 787 (815)
Q Consensus 708 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c 787 (815)
+.+..+|. .+..+..|. .++....+|. .+++|++|++++ +.++.+|. +|++++.|++.+|
T Consensus 367 N~l~~l~~------------ip~~l~~L~--~n~~~~~i~~---~~~~L~~L~ls~-N~l~~~~~--iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 367 NPLREFPD------------IPESVEDLR--MNSHLAEVPE---LPQNLKQLHVET-NPLREFPD--IPESVEDLRMNSE 426 (454)
T ss_dssp SCCSSCCC------------CCTTCCEEE--CCC----------------------------------------------
T ss_pred CCCCcCCC------------ChHHHHhhh--hccccccccc---ccCcCCEEECCC-CcCCcccc--chhhHhheeCcCc
Confidence 45544432 233444433 2344445553 248999999998 46666654 6788999998887
Q ss_pred c
Q 044882 788 P 788 (815)
Q Consensus 788 ~ 788 (815)
.
T Consensus 427 ~ 427 (454)
T 1jl5_A 427 R 427 (454)
T ss_dssp -
T ss_pred c
Confidence 5
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.2e-28 Score=267.32 Aligned_cols=355 Identities=15% Similarity=0.126 Sum_probs=232.5
Q ss_pred cccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCc
Q 044882 146 LPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKL 225 (815)
Q Consensus 146 ~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 225 (815)
+..+.++++|++|++++|.++.+| +++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcC
Confidence 335567888888888888888887 6888888888888888888876 788888888888888 677665 7888888
Q ss_pred ceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCce
Q 044882 226 HHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRE 305 (815)
Q Consensus 226 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~ 305 (815)
++|++++|. +..+| ++.+++|++|+..
T Consensus 109 ~~L~L~~N~-l~~l~--~~~l~~L~~L~l~-------------------------------------------------- 135 (457)
T 3bz5_A 109 TYLNCDTNK-LTKLD--VSQNPLLTYLNCA-------------------------------------------------- 135 (457)
T ss_dssp CEEECCSSC-CSCCC--CTTCTTCCEEECT--------------------------------------------------
T ss_pred CEEECCCCc-CCeec--CCCCCcCCEEECC--------------------------------------------------
Confidence 888888887 55554 6666666666321
Q ss_pred eeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeec-CCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCC
Q 044882 306 LLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGY-GGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLP 384 (815)
Q Consensus 306 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 384 (815)
.|..++ + .+..+++|+.|+++++ ....++ +. .+++|++|++++|.+.+ ++ ++.++
T Consensus 136 ----~N~l~~-------------l-~l~~l~~L~~L~l~~n~~~~~~~--~~--~l~~L~~L~ls~n~l~~-l~-l~~l~ 191 (457)
T 3bz5_A 136 ----RNTLTE-------------I-DVSHNTQLTELDCHLNKKITKLD--VT--PQTQLTTLDCSFNKITE-LD-VSQNK 191 (457)
T ss_dssp ----TSCCSC-------------C-CCTTCTTCCEEECTTCSCCCCCC--CT--TCTTCCEEECCSSCCCC-CC-CTTCT
T ss_pred ----CCccce-------------e-ccccCCcCCEEECCCCCcccccc--cc--cCCcCCEEECCCCccce-ec-cccCC
Confidence 111100 0 0112234444444444 122221 22 47788888888887665 44 77778
Q ss_pred CcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC-CC
Q 044882 385 SLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP-EH 463 (815)
Q Consensus 385 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~ 463 (815)
+|+.|++++|. ++.++ +..+++|+.|++++ +++++ +| ..
T Consensus 192 ~L~~L~l~~N~-l~~~~-------------------------------------l~~l~~L~~L~Ls~-N~l~~-ip~~~ 231 (457)
T 3bz5_A 192 LLNRLNCDTNN-ITKLD-------------------------------------LNQNIQLTFLDCSS-NKLTE-IDVTP 231 (457)
T ss_dssp TCCEEECCSSC-CSCCC-------------------------------------CTTCTTCSEEECCS-SCCSC-CCCTT
T ss_pred CCCEEECcCCc-CCeec-------------------------------------cccCCCCCEEECcC-Ccccc-cCccc
Confidence 88888887763 22221 11345555555555 34442 34 34
Q ss_pred CCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcce
Q 044882 464 LPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLED 543 (815)
Q Consensus 464 l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 543 (815)
+++|+.|++++|.........+++|+.|++++ .+|+.|++++|..++.+|. ..+++|+.
T Consensus 232 l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~-----------------n~L~~L~l~~n~~~~~~~~----~~l~~L~~ 290 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ-----------------TDLLEIDLTHNTQLIYFQA----EGCRKIKE 290 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCCEEECTT-----------------CCCSCCCCTTCTTCCEEEC----TTCTTCCC
T ss_pred cCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC-----------------CCCCEEECCCCccCCcccc----cccccCCE
Confidence 45555555555543333344455555555433 2577788888887777763 57899999
Q ss_pred EEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCc
Q 044882 544 MSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKL 623 (815)
Q Consensus 544 L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 623 (815)
|++++|..++.++. ..+ .|+.++++++++|+.+++++|.+++. .+.++++|+.|++++|+... ++.|
T Consensus 291 L~Ls~n~~l~~l~~-~~~-~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L 357 (457)
T 3bz5_A 291 LDVTHNTQLYLLDC-QAA-GITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSV 357 (457)
T ss_dssp CCCTTCTTCCEEEC-TTC-CCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTG
T ss_pred EECCCCcccceecc-CCC-cceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccc
Confidence 99999988777664 233 78888888888888888888888885 37788888888888886432 3466
Q ss_pred ceEEecccccccccccccCCCCCcCcEEecCCCCCCCCC
Q 044882 624 TRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLK 662 (815)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 662 (815)
+.|++++|.+.+. ..+..|+.+++++|.....+|
T Consensus 358 ~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip 391 (457)
T 3bz5_A 358 GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVS 391 (457)
T ss_dssp GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECC
T ss_pred ccccccCCcEEec-----ceeeecCccccccCcEEEEcC
Confidence 7777777765544 244567777777775444444
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.5e-28 Score=267.92 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=56.2
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCC-cc-chhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIR-TL-PESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
++|++|+|++|.++.+ |..|+++++|++|++++|.+. .+ |..++++++|++|++++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5677777777777765 566777777777777777765 44 35677777777777777733333366677777777777
Q ss_pred ccCCC
Q 044882 230 NSNTK 234 (815)
Q Consensus 230 l~~~~ 234 (815)
+++|.
T Consensus 110 L~~n~ 114 (455)
T 3v47_A 110 LTQCN 114 (455)
T ss_dssp CTTSC
T ss_pred CCCCC
Confidence 77776
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.7e-27 Score=259.50 Aligned_cols=118 Identities=20% Similarity=0.336 Sum_probs=69.6
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCC
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYN 200 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 200 (815)
++++++.|.+.+.. ....+.+..+++|++|++++|.++.+|. ++++++|++|++++|.+..+|. ++++++
T Consensus 44 ~l~~l~~L~l~~~~--------i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 44 DLDQVTTLQADRLG--------IKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HHHTCCEEECCSSC--------CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred HhccccEEecCCCC--------CccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 34556666554432 1112335556666666666666666654 6666666666666666666655 666666
Q ss_pred CcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
|++|++++| .+..+|. ++++++|++|++++|. +..+| .++.+++|+.|
T Consensus 114 L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L 161 (466)
T 1o6v_A 114 LTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQL 161 (466)
T ss_dssp CCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEE
T ss_pred CCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEe
Confidence 666666666 5555554 6666666666666665 44443 24455555444
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.8e-27 Score=257.92 Aligned_cols=403 Identities=17% Similarity=0.145 Sum_probs=159.2
Q ss_pred CCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCcc-ccCccccCCccC-------------CEEecCCCC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIF-ELPDSIGDLRYL-------------RYLNLSGTE 187 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L-------------~~L~L~~~~ 187 (815)
.++||.|.+.++. + ..+|+.++++++|++|++++|.+. .+|.+++++++| ++|++++|.
T Consensus 10 ~~~L~~L~l~~n~------l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 10 NTFLQEPLRHSSN------L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccchhhhcccCc------h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 4555555554432 3 455566666666666666666655 556666666554 666666666
Q ss_pred CCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccc
Q 044882 188 IRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRE 267 (815)
Q Consensus 188 i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~ 267 (815)
++.+|.. .++|++|++++| .+..+|.. +++|++|++++|. +..+|... ++|++|+.....
T Consensus 83 l~~lp~~---~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n~--------- 142 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNNQ--------- 142 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSSC---------
T ss_pred cccCCCC---cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCCC---------
Confidence 6666542 256666666666 45555542 2566666666665 44443211 344444221110
Q ss_pred cccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecC
Q 044882 268 LKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYG 347 (815)
Q Consensus 268 l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 347 (815)
+.. ++ .+..+++|+.|++++|..++.. ...++|+.|++++|.
T Consensus 143 ---------------l~~-------lp-~~~~l~~L~~L~l~~N~l~~lp---------------~~~~~L~~L~L~~n~ 184 (454)
T 1jl5_A 143 ---------------LEK-------LP-ELQNSSFLKIIDVDNNSLKKLP---------------DLPPSLEFIAAGNNQ 184 (454)
T ss_dssp ---------------CSS-------CC-CCTTCTTCCEEECCSSCCSCCC---------------CCCTTCCEEECCSSC
T ss_pred ---------------CCC-------Cc-ccCCCCCCCEEECCCCcCcccC---------------CCcccccEEECcCCc
Confidence 000 00 1344455555555555442100 012356666666666
Q ss_pred CCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeecccccc
Q 044882 348 GTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEW 427 (815)
Q Consensus 348 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 427 (815)
+..+|. +. .+++|++|++++|.+.+ +|.. .++|++|++++|. +..++. ++ .+++|+.|++.+.. +
T Consensus 185 l~~l~~-~~--~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~-l~~lp~--~~-----~l~~L~~L~l~~N~-l 249 (454)
T 1jl5_A 185 LEELPE-LQ--NLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNI-LEELPE--LQ-----NLPFLTTIYADNNL-L 249 (454)
T ss_dssp CSSCCC-CT--TCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSC-CSSCCC--CT-----TCTTCCEEECCSSC-C
T ss_pred CCcCcc-cc--CCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCc-CCcccc--cC-----CCCCCCEEECCCCc-C
Confidence 655553 22 36666666666666543 2221 1456666666652 333321 11 14455555554421 1
Q ss_pred ccccccCCCCCcccCCCcceeeeccCcccccCCCCCCCCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCC
Q 044882 428 EDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGH 507 (815)
Q Consensus 428 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 507 (815)
..+.. .+++|+.|++++ +.++ .+|..+++|+.|++++|.... .....++|+.|++++|.... +
T Consensus 250 ~~l~~--------~~~~L~~L~l~~-N~l~-~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~------i 312 (454)
T 1jl5_A 250 KTLPD--------LPPSLEALNVRD-NYLT-DLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRS------L 312 (454)
T ss_dssp SSCCS--------CCTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSE------E
T ss_pred Ccccc--------cccccCEEECCC-Cccc-ccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCc------c
Confidence 11111 245677777766 3566 466556667777666654221 11112455555555543321 0
Q ss_pred CCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccccccccccccc
Q 044882 508 PGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSS 587 (815)
Q Consensus 508 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~ 587 (815)
...+++|++|++++|.. ..+|. .+++|+.|++++|. ++.++. .+++|+.+++++|.+.+
T Consensus 313 -~~~~~~L~~L~Ls~N~l-~~lp~-----~~~~L~~L~L~~N~-l~~lp~-------------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 313 -CDLPPSLEELNVSNNKL-IELPA-----LPPRLERLIASFNH-LAEVPE-------------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -CCCCTTCCEEECCSSCC-SCCCC-----CCTTCCEEECCSSC-CSCCCC-------------CCTTCCEEECCSSCCSS
T ss_pred -cCCcCcCCEEECCCCcc-ccccc-----cCCcCCEEECCCCc-cccccc-------------hhhhccEEECCCCCCCc
Confidence 11234566666665542 22332 24556666665552 222211 12444555555555544
Q ss_pred --CcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc--ccccccCCCCCcCcEEecCCCCCC
Q 044882 588 --SSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE--ALPKGLHNLTSLQELTIGRGVELP 659 (815)
Q Consensus 588 --~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 659 (815)
.+|..+.. | +.|.....+|. .+++|++|++++|++.+ .+|. +++.|.+.+|....
T Consensus 372 l~~ip~~l~~------L--~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 372 FPDIPESVED------L--RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVD 430 (454)
T ss_dssp CCCCCTTCCE------E--ECCC-----------------------------------------------------
T ss_pred CCCChHHHHh------h--hhccccccccc---ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCC
Confidence 33332221 1 12222333332 13789999999998766 5553 46667777774333
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.6e-27 Score=258.57 Aligned_cols=262 Identities=19% Similarity=0.192 Sum_probs=182.9
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.+.++++|+.|.+.++. +. .+ +.+..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| +++
T Consensus 37 ~~~~l~~L~~L~Ls~n~------l~-~~-~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS------IT-DM-TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EHHHHTTCCEEECCSSC------CC-CC-TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred ChhHcCCCCEEEccCCC------cc-cC-hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCC
Confidence 45577889999887653 22 22 36788999999999999999886 889999999999999999886 889
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGT 277 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 277 (815)
+++|++|++++| .+..+| ++.+++|++|++++|. +..+| ++.+++|++|+........
T Consensus 105 l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~---------------- 162 (457)
T 3bz5_A 105 LTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT---------------- 162 (457)
T ss_dssp CTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC----------------
T ss_pred CCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc----------------
Confidence 999999999999 777776 8999999999999998 66664 7778888877432111000
Q ss_pred eeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCC
Q 044882 278 LNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGD 357 (815)
Q Consensus 278 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 357 (815)
.. .+..+++|+.|++++|..++ ++ +..+++|+.|+++++.+..++ +.
T Consensus 163 ----------~~------~~~~l~~L~~L~ls~n~l~~-------------l~-l~~l~~L~~L~l~~N~l~~~~--l~- 209 (457)
T 3bz5_A 163 ----------KL------DVTPQTQLTTLDCSFNKITE-------------LD-VSQNKLLNRLNCDTNNITKLD--LN- 209 (457)
T ss_dssp ----------CC------CCTTCTTCCEEECCSSCCCC-------------CC-CTTCTTCCEEECCSSCCSCCC--CT-
T ss_pred ----------cc------ccccCCcCCEEECCCCccce-------------ec-cccCCCCCEEECcCCcCCeec--cc-
Confidence 00 14456677788887776521 11 456677888888888777663 32
Q ss_pred CCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcceeeeccccccccccccCCCC
Q 044882 358 SSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLETLRFEDMQEWEDWIPLRSGQ 437 (815)
Q Consensus 358 ~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 437 (815)
.+++|++|++++|.+.+ +| ++.+++|+.|++++|. ++.++ ...+++|+.|.+.
T Consensus 210 -~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~-l~~~~--------~~~l~~L~~L~l~--------------- 262 (457)
T 3bz5_A 210 -QNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNP-LTELD--------VSTLSKLTTLHCI--------------- 262 (457)
T ss_dssp -TCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSC-CSCCC--------CTTCTTCCEEECT---------------
T ss_pred -cCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCc-CCCcC--------HHHCCCCCEEecc---------------
Confidence 57888888888888766 45 7778888888888873 33332 1125666666542
Q ss_pred CcccCCCcceeeeccCcccccCCC-CCCCCccEEEEecccCc
Q 044882 438 GVEGFPKLRELHILRCSKLKGTFP-EHLPALEMLVIEGCEEL 478 (815)
Q Consensus 438 ~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~~l 478 (815)
..+|+.|++++|..+. .+| ..+++|+.|++++|..+
T Consensus 263 ----~n~L~~L~l~~n~~~~-~~~~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 263 ----QTDLLEIDLTHNTQLI-YFQAEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp ----TCCCSCCCCTTCTTCC-EEECTTCTTCCCCCCTTCTTC
T ss_pred ----CCCCCEEECCCCccCC-cccccccccCCEEECCCCccc
Confidence 3456666776654332 444 34556666666555433
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=6.9e-27 Score=256.25 Aligned_cols=189 Identities=21% Similarity=0.297 Sum_probs=138.9
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
.+++++.|+++++.+..+|. +..+++|++|++++|.++.+|. ++++++|++|++++| .+..+|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 46778999999998888874 7888999999999999988877 889999999999998 6777776 889999999999
Q ss_pred cCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEE
Q 044882 231 SNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRW 310 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 310 (815)
++|. +..+|. ++++++|++|+.......... .+..+++|+.|.+..
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~--------------------------------~~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTISDIS--------------------------------ALSGLTSLQQLSFGN 165 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEECCCG--------------------------------GGTTCTTCSEEEEEE
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCccCCCh--------------------------------hhccCCcccEeecCC
Confidence 9987 777765 888888888854433211110 144556667777653
Q ss_pred ccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeee
Q 044882 311 TLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLA 390 (815)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 390 (815)
+.. ....+..+++|+.|+++++....++. +. .+++|++|++++|.+.+..+ ++.+++|+.|+
T Consensus 166 ~~~--------------~~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 227 (466)
T 1o6v_A 166 QVT--------------DLKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDELS 227 (466)
T ss_dssp SCC--------------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEE
T ss_pred ccc--------------CchhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEEE
Confidence 211 11225566778888888877766654 22 47888888888888765444 66788888888
Q ss_pred eccCC
Q 044882 391 VCGMS 395 (815)
Q Consensus 391 l~~~~ 395 (815)
+++|.
T Consensus 228 l~~n~ 232 (466)
T 1o6v_A 228 LNGNQ 232 (466)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 88873
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=4.7e-26 Score=249.77 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=75.5
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 232 (815)
-+.++.+++.++.+|. +. ++|++|+|++|.++.+ |..++++++|++|++++|.....+ |..++++++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3578889999999987 43 7999999999999977 688999999999999999544355 56689999999999999
Q ss_pred CCcccccccccccccccccc
Q 044882 233 TKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 233 ~~~l~~~p~~i~~L~~L~~L 252 (815)
|......|..++++++|++|
T Consensus 89 n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEE
T ss_pred CccCccChhhccCcccCCEE
Confidence 98333335556666655555
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=245.90 Aligned_cols=84 Identities=23% Similarity=0.139 Sum_probs=48.7
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEe
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 652 (815)
++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 34444444444444444445556666666666666655555556666666666666666655544445566666666666
Q ss_pred cCCC
Q 044882 653 GRGV 656 (815)
Q Consensus 653 ~~~~ 656 (815)
++|+
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 6664
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.9e-25 Score=235.23 Aligned_cols=86 Identities=21% Similarity=0.424 Sum_probs=67.1
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +.++++|++|++++| .+..+| .++++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 466778888888888887764 7788888888888888888776 888888888888888 676766 488888888888
Q ss_pred ccCCCcccccc
Q 044882 230 NSNTKSLEEMP 240 (815)
Q Consensus 230 l~~~~~l~~~p 240 (815)
+++|. +..+|
T Consensus 117 l~~n~-i~~~~ 126 (347)
T 4fmz_A 117 LNEDN-ISDIS 126 (347)
T ss_dssp CTTSC-CCCCG
T ss_pred CcCCc-ccCch
Confidence 88876 44443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-25 Score=237.84 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=87.6
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
..+++|+.|++++|.+.+..+..+..+++|++|++++|. +..+|..+..+++|++|++++|++. .+|..+..+++|++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence 345566666666777777677788899999999999996 5567777788899999999999865 56777888999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCceEEEcCCcchhh
Q 044882 650 LTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 683 (815)
|++++|+ ++.++ ...+++|+.|++++|+....
T Consensus 323 L~L~~N~-i~~~~-~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 323 LYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp EECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCc-cceeC-chhhccCCEEEcCCCCccch
Confidence 9999994 55554 56778999999999986543
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=7.3e-25 Score=230.85 Aligned_cols=122 Identities=18% Similarity=0.336 Sum_probs=96.9
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
....+++++.|.+.++. ....+.+..+++|++|++++|.++.+|. +..+++|++|++++|.++.+| .+++
T Consensus 39 ~~~~l~~L~~L~l~~~~--------i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~ 108 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK--------VASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQN 108 (347)
T ss_dssp CHHHHTTCSEEECCSSC--------CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred cchhcccccEEEEeCCc--------cccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcC
Confidence 34567888999887654 1223457889999999999999999877 999999999999999999886 6999
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|++|++++| .+..+|. +..+++|++|++++|.....++ .++.+++|++|
T Consensus 109 l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 109 LTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp CTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred CCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 999999999999 7888887 9999999999999997444332 24444443333
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.7e-24 Score=241.83 Aligned_cols=110 Identities=16% Similarity=0.181 Sum_probs=89.0
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
..+++|+.|++++|.+.+..|..+..+++|+.|++++|. +..+|..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCE
Confidence 445667777777777777777888899999999999996 4557777788999999999999866 67777888999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCceEEEcCCcchhh
Q 044882 650 LTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWK 683 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 683 (815)
|++++|. +..++ .+.+++|+.|++++|+....
T Consensus 329 L~L~~N~-l~~~~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 329 LYLDHNS-IVTLK-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECCSSC-CCCCC-CCTTCCCSEEECCSSCEEHH
T ss_pred EECCCCC-CCCcC-hhhcCCCCEEEeeCCCCCCh
Confidence 9999995 44444 56778999999999986543
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.6e-23 Score=229.08 Aligned_cols=310 Identities=17% Similarity=0.197 Sum_probs=204.2
Q ss_pred cEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCCcce
Q 044882 340 QFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLCLET 418 (815)
Q Consensus 340 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 418 (815)
.++..+...+.+|..+ .++++.|++++|.+....+ .+..+++|++|++++| .+..+....+
T Consensus 15 ~v~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~------------- 76 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI----PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAF------------- 76 (477)
T ss_dssp EEECCSCCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTT-------------
T ss_pred EEEeCCCCcCcCCCCC----CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhh-------------
Confidence 3444555666777654 3578888888888776655 6788888888888887 3333322221
Q ss_pred eeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCC----CCCCCccEEEEecccCccccCCCCCCcceEEeC
Q 044882 419 LRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFP----EHLPALEMLVIEGCEELLVSVTSLPALCKFISG 494 (815)
Q Consensus 419 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 494 (815)
..+++|+.|++++ ++++ .+| ..+++|+.|++++|.........
T Consensus 77 ---------------------~~l~~L~~L~L~~-n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---------- 123 (477)
T 2id5_A 77 ---------------------NNLFNLRTLGLRS-NRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYM---------- 123 (477)
T ss_dssp ---------------------TTCTTCCEEECCS-SCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTT----------
T ss_pred ---------------------hCCccCCEEECCC-CcCC-ccCcccccCCCCCCEEECCCCccccCChhH----------
Confidence 2456666666666 3455 333 23345555555444321110000
Q ss_pred CCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccc
Q 044882 495 GCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDN 574 (815)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~ 574 (815)
....++|++|++++|......+..+ ..+++|++|++++|. ++.++.. .+.++++
T Consensus 124 --------------~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~---------~l~~l~~ 177 (477)
T 2id5_A 124 --------------FQDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCN-LTSIPTE---------ALSHLHG 177 (477)
T ss_dssp --------------TTTCTTCCEEEECCTTCCEECTTSS--TTCTTCCEEEEESCC-CSSCCHH---------HHTTCTT
T ss_pred --------------ccccccCCEEECCCCccceeChhhc--cCCCCCCEEECCCCc-CcccChh---------HhcccCC
Confidence 1111567777777776444444444 678899999999883 3322211 2456778
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
|+.|++++|.+.+..+..+..+++|++|++++|+....+|.......+|++|++++|.+....+..+..+++|++|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 88888888888887777888888899999988888888887777777889999998886654445678888899999988
Q ss_pred CCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 655 GVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 655 ~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
|. ++.++. ...+++|++|++++|...... +..+.++++|+.|++++ +.+..++. ..+..+++|
T Consensus 258 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~--N~l~~~~~--------~~~~~l~~L 322 (477)
T 2id5_A 258 NP-ISTIEGSMLHELLRLQEIQLVGGQLAVVE----PYAFRGLNYLRVLNVSG--NQLTTLEE--------SVFHSVGNL 322 (477)
T ss_dssp SC-CCEECTTSCTTCTTCCEEECCSSCCSEEC----TTTBTTCTTCCEEECCS--SCCSCCCG--------GGBSCGGGC
T ss_pred Cc-CCccChhhccccccCCEEECCCCccceEC----HHHhcCcccCCEEECCC--CcCceeCH--------hHcCCCccc
Confidence 84 444443 256778888888888654422 24677788888888887 56666665 334567788
Q ss_pred ceEEecCCC
Q 044882 733 TSLWISGFP 741 (815)
Q Consensus 733 ~~L~l~~c~ 741 (815)
+.|++++|+
T Consensus 323 ~~L~l~~N~ 331 (477)
T 2id5_A 323 ETLILDSNP 331 (477)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 888888843
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.2e-23 Score=223.01 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=66.9
Q ss_pred CCCcccEEEcCCCCccccCcc-ccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcce
Q 044882 151 KLQRLRAFSLRGYHIFELPDS-IGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHH 227 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~ 227 (815)
.+.++++|+++++.++.+|.. +..+++|++|++++|.+..+| ..++++++|++|++++| .+..+| ..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 467788888888888888765 577888888888888888776 47788888888888888 555554 44678888888
Q ss_pred eeccCCCccccccc
Q 044882 228 LKNSNTKSLEEMPV 241 (815)
Q Consensus 228 L~l~~~~~l~~~p~ 241 (815)
|++++|. +..+|.
T Consensus 122 L~L~~n~-l~~l~~ 134 (390)
T 3o6n_A 122 LVLERND-LSSLPR 134 (390)
T ss_dssp EECCSSC-CCCCCT
T ss_pred EECCCCc-cCcCCH
Confidence 8888776 444443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.4e-22 Score=228.85 Aligned_cols=105 Identities=18% Similarity=0.149 Sum_probs=70.2
Q ss_pred ccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC-CCCCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED-GLPTNL 670 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L 670 (815)
.+..+++|+.|++++|......|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|. +..+|.. +.+++|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRL 326 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTC
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCccCcccccCCCC
Confidence 56678888888888888777777778888888888888887654 56666778888888888884 3344422 345566
Q ss_pred ceEEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 671 QSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 671 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
+.|++++|.... ..+..+++|+.|++++
T Consensus 327 ~~L~L~~N~l~~-------~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 327 ENLYLDHNSIVT-------LKLSTHHTLKNLTLSH 354 (597)
T ss_dssp SEEECCSSCCCC-------CCCCTTCCCSEEECCS
T ss_pred CEEECCCCCCCC-------cChhhcCCCCEEEeeC
Confidence 666666665322 1234445555555554
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=7.8e-22 Score=205.72 Aligned_cols=85 Identities=25% Similarity=0.404 Sum_probs=70.1
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCcccccc-chhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 230 (815)
.++++++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++| .+..+ |..++++++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 468999999999999987765 689999999999998874 7899999999999998 55555 778899999999999
Q ss_pred cCCCccccccc
Q 044882 231 SNTKSLEEMPV 241 (815)
Q Consensus 231 ~~~~~l~~~p~ 241 (815)
++|. +..+|.
T Consensus 108 s~n~-l~~l~~ 117 (330)
T 1xku_A 108 SKNQ-LKELPE 117 (330)
T ss_dssp CSSC-CSBCCS
T ss_pred CCCc-CCccCh
Confidence 8887 555543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.9e-21 Score=202.85 Aligned_cols=86 Identities=24% Similarity=0.352 Sum_probs=70.7
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 230 (815)
.++++++++++.++.+|..+. ++|++|++++|.+..+| ..++++++|++|++++| .+..+ |..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 368999999999999988774 68999999999998775 57899999999999998 55555 777899999999999
Q ss_pred cCCCcccccccc
Q 044882 231 SNTKSLEEMPVG 242 (815)
Q Consensus 231 ~~~~~l~~~p~~ 242 (815)
++|. +..+|..
T Consensus 110 ~~n~-l~~l~~~ 120 (332)
T 2ft3_A 110 SKNH-LVEIPPN 120 (332)
T ss_dssp CSSC-CCSCCSS
T ss_pred CCCc-CCccCcc
Confidence 9887 5555543
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.5e-22 Score=208.13 Aligned_cols=94 Identities=22% Similarity=0.351 Sum_probs=85.7
Q ss_pred CCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeec
Q 044882 151 KLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKN 230 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 230 (815)
...++++|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++|++|++++| .+..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 45779999999999999999999999999999999999999999999999999999999 77799999999999999999
Q ss_pred cCCCccccccccccc
Q 044882 231 SNTKSLEEMPVGIGR 245 (815)
Q Consensus 231 ~~~~~l~~~p~~i~~ 245 (815)
++|...+.+|..++.
T Consensus 158 ~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 158 RACPELTELPEPLAS 172 (328)
T ss_dssp EEETTCCCCCSCSEE
T ss_pred CCCCCccccChhHhh
Confidence 998877788776543
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=1.7e-21 Score=201.86 Aligned_cols=124 Identities=24% Similarity=0.424 Sum_probs=103.8
Q ss_pred cCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCC
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYN 200 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 200 (815)
...+++.|.+.++. +. .+|+.+.++++|++|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++
T Consensus 79 ~~~~l~~L~L~~n~------l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 79 TQPGRVALELRSVP------LP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp TSTTCCEEEEESSC------CS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred cccceeEEEccCCC------ch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 45788888887754 33 677788889999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCCccccccchhhcC---------cCCcceeeccCCCcccccccccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGN---------LAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~---------L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
|++|++++|..+..+|..++. +++|++|++++|. +..+|..++++++|++|
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence 999999998788899987765 8888888888876 55666655555444444
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=5.9e-22 Score=204.20 Aligned_cols=251 Identities=13% Similarity=0.096 Sum_probs=199.2
Q ss_pred cccceEEEeccCCcc--cCchhhhcCCCCCcceEEEeccCCch-hhhccccccccceEecccccccccccccccccccCc
Q 044882 513 SVLKKIEIRECDALK--SLPEAWMCGTNSSLEDMSIRQCHSLT-YIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSS 589 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~ 589 (815)
.+++.|++++|...+ .+|..+ ..+++|++|+++++..+. .++. . +.++++|++|++++|.+.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~-----~-----l~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPP-----A-----IAKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCG-----G-----GGGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhH--hCCCCCCeeeCCCCCcccccCCh-----h-----HhcCCCCCEEECcCCeeCCcC
Confidence 478899999998766 677766 789999999999633333 2221 2 457789999999999999999
Q ss_pred ccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCC-CcCcEEecCCCCCCCCCCC-CCC
Q 044882 590 RSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLT-SLQELTIGRGVELPSLKED-GLP 667 (815)
Q Consensus 590 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~-~~~ 667 (815)
|..+.++++|++|++++|.....+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.....+|.. +.+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 99999999999999999987778888888999999999999998888999998888 9999999999644344433 344
Q ss_pred CCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcccc
Q 044882 668 TNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLS 747 (815)
Q Consensus 668 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~ 747 (815)
+ |++|++++|....... ..+..+++|+.|++++ +.+...+. .+..+++|++|++++|.....+|
T Consensus 198 ~-L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~--N~l~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p 261 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDAS----VLFGSDKNTQKIHLAK--NSLAFDLG---------KVGLSKNLNGLDLRNNRIYGTLP 261 (313)
T ss_dssp C-CSEEECCSSEEEECCG----GGCCTTSCCSEEECCS--SEECCBGG---------GCCCCTTCCEEECCSSCCEECCC
T ss_pred c-ccEEECcCCcccCcCC----HHHhcCCCCCEEECCC--CceeeecC---------cccccCCCCEEECcCCcccCcCC
Confidence 4 9999999997654222 4678899999999998 44443322 13567899999999965445888
Q ss_pred ccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCcchH
Q 044882 748 SSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLIE 791 (815)
Q Consensus 748 ~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~ 791 (815)
..+..+++|++|++++|+--..+|..+..++|+.|+++++|.+.
T Consensus 262 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 262 QGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred hHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 89999999999999996444477876667899999999998654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1.2e-20 Score=196.64 Aligned_cols=259 Identities=15% Similarity=0.194 Sum_probs=155.0
Q ss_pred CcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCC
Q 044882 337 NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLC 415 (815)
Q Consensus 337 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 415 (815)
+++.++++++....+|..+ .++++.|++++|.+.+..+ .++.+++|++|++++|. +..+...
T Consensus 32 ~l~~l~~~~~~l~~lp~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------ 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPG------------ 94 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC----CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTT------------
T ss_pred CCeEEEecCCCccccCccC----CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHH------------
Confidence 4666777777777777654 3578888888888766555 67788888888888763 3322111
Q ss_pred cceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCC-CCCCccEEEEecccCccc---cCCCCCCcceE
Q 044882 416 LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPE-HLPALEMLVIEGCEELLV---SVTSLPALCKF 491 (815)
Q Consensus 416 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L 491 (815)
.+..+++|++|++++ +.++ .+|. ..++|++|++++|..... .+..+
T Consensus 95 ----------------------~~~~l~~L~~L~Ls~-n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l------ 144 (330)
T 1xku_A 95 ----------------------AFAPLVKLERLYLSK-NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGL------ 144 (330)
T ss_dssp ----------------------TTTTCTTCCEEECCS-SCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTC------
T ss_pred ----------------------HhcCCCCCCEEECCC-CcCC-ccChhhcccccEEECCCCcccccCHhHhcCC------
Confidence 122466677777766 3555 4552 234555555555432110 11122
Q ss_pred EeCCCCccccccccCCCCCCccccceEEEeccCCcc--cCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEec
Q 044882 492 ISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALK--SLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLI 569 (815)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l 569 (815)
++|++|++++|.... ..+..+ ..+++|+.|++++|. ++.++. .
T Consensus 145 ---------------------~~L~~L~l~~n~l~~~~~~~~~~--~~l~~L~~L~l~~n~-l~~l~~-----~------ 189 (330)
T 1xku_A 145 ---------------------NQMIVVELGTNPLKSSGIENGAF--QGMKKLSYIRIADTN-ITTIPQ-----G------ 189 (330)
T ss_dssp ---------------------TTCCEEECCSSCCCGGGBCTTGG--GGCTTCCEEECCSSC-CCSCCS-----S------
T ss_pred ---------------------ccccEEECCCCcCCccCcChhhc--cCCCCcCEEECCCCc-cccCCc-----c------
Confidence 344444554444321 222222 566777777777763 222221 1
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
-.++|+.+++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 190 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 267 (330)
T 1xku_A 190 -LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267 (330)
T ss_dssp -CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCE
T ss_pred -ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCE
Confidence 1146666777777777766777777888888888888755555556777778888888888754 66777777888888
Q ss_pred EEecCCCCCCCCCCCCC--------CCCCceEEEcCCcc
Q 044882 650 LTIGRGVELPSLKEDGL--------PTNLQSLTIEGNME 680 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~ 680 (815)
|++++| .++.++.... .++++.|++++|+.
T Consensus 268 L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 268 VYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp EECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred EECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence 888887 4444443211 24566666666653
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1.2e-20 Score=196.69 Aligned_cols=281 Identities=16% Similarity=0.158 Sum_probs=161.6
Q ss_pred CcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCCceecCccccCCCCCCCCCC
Q 044882 337 NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPIPFLC 415 (815)
Q Consensus 337 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 415 (815)
+++.++++++....+|..+ .++++.|++++|.+....+ .+..+++|++|++++|. +..+....+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---------- 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAF---------- 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGS----------
T ss_pred cCCEEECCCCCccccCCCC----CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHh----------
Confidence 4677777777777787755 3678888888888766555 67888888888888873 333322221
Q ss_pred cceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCC-CCCCccEEEEecccCccc---cCCCCCCcceE
Q 044882 416 LETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPE-HLPALEMLVIEGCEELLV---SVTSLPALCKF 491 (815)
Q Consensus 416 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L 491 (815)
..+++|++|++++ +.++ .+|. ..++|++|++++|..... .+..+
T Consensus 99 ------------------------~~l~~L~~L~L~~-n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l------ 146 (332)
T 2ft3_A 99 ------------------------SPLRKLQKLYISK-NHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGL------ 146 (332)
T ss_dssp ------------------------TTCTTCCEEECCS-SCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSC------
T ss_pred ------------------------hCcCCCCEEECCC-CcCC-ccCccccccCCEEECCCCccCccCHhHhCCC------
Confidence 2466777777766 3555 4552 224555665555432110 01112
Q ss_pred EeCCCCccccccccCCCCCCccccceEEEeccCCcc--cCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEec
Q 044882 492 ISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALK--SLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLI 569 (815)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l 569 (815)
++|++|++++|.... ..+..+ ..+ +|+.|++++|. ++.++. .
T Consensus 147 ---------------------~~L~~L~l~~n~l~~~~~~~~~~--~~l-~L~~L~l~~n~-l~~l~~-----~------ 190 (332)
T 2ft3_A 147 ---------------------RNMNCIEMGGNPLENSGFEPGAF--DGL-KLNYLRISEAK-LTGIPK-----D------ 190 (332)
T ss_dssp ---------------------SSCCEEECCSCCCBGGGSCTTSS--CSC-CCSCCBCCSSB-CSSCCS-----S------
T ss_pred ---------------------ccCCEEECCCCccccCCCCcccc--cCC-ccCEEECcCCC-CCccCc-----c------
Confidence 344555555544321 122222 333 66777777663 222221 1
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
-.++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 191 -~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 191 -LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268 (332)
T ss_dssp -SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCE
T ss_pred -ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCE
Confidence 1146677777777777777677777777778888777655554556667777778888777754 66666777777778
Q ss_pred EEecCCCCCCCCCCCC--------CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 650 LTIGRGVELPSLKEDG--------LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 650 L~l~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
|++++| .++.++... ..++|+.|++++|+........ ..+..+++|+.+++++
T Consensus 269 L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~--~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 269 VYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGN 329 (332)
T ss_dssp EECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG--GGGTTBCCSTTEEC--
T ss_pred EECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc--ccccccchhhhhhccc
Confidence 887777 344443221 1345666666666533211111 2344444455444444
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.3e-20 Score=210.11 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=63.9
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccC
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSN 232 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 232 (815)
..+++|+++++.++.+|..+. ++|++|++++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 347889999999888888776 789999999998888887 5788899999988 6777877 678888888888
Q ss_pred CCccccccc
Q 044882 233 TKSLEEMPV 241 (815)
Q Consensus 233 ~~~l~~~p~ 241 (815)
|. +..+|.
T Consensus 111 N~-l~~l~~ 118 (622)
T 3g06_A 111 NP-LTHLPA 118 (622)
T ss_dssp CC-CCCCCC
T ss_pred Cc-CCCCCC
Confidence 86 555543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=193.73 Aligned_cols=87 Identities=18% Similarity=0.286 Sum_probs=64.6
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCcccccc-chhhcCcCCcceee
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLK 229 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~ 229 (815)
++...+.+++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++| .+..+ |..++++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEE
Confidence 3444567888888888887665 488888888888887774 7888888888888888 55555 45688888888888
Q ss_pred ccCCCcccccccc
Q 044882 230 NSNTKSLEEMPVG 242 (815)
Q Consensus 230 l~~~~~l~~~p~~ 242 (815)
+++|. +..+|..
T Consensus 107 Ls~n~-l~~~~~~ 118 (353)
T 2z80_A 107 LSYNY-LSNLSSS 118 (353)
T ss_dssp CCSSC-CSSCCHH
T ss_pred CCCCc-CCcCCHh
Confidence 88886 5555443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.3e-21 Score=222.37 Aligned_cols=61 Identities=18% Similarity=0.276 Sum_probs=33.4
Q ss_pred CCccCCEEecCCCCCC-ccchhhhcc--CCCcEEeccCCcccc--ccchhhcCcCCcceeeccCCC
Q 044882 174 DLRYLRYLNLSGTEIR-TLPESVNKL--YNLHSLLLEDCDRLK--KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 174 ~l~~L~~L~L~~~~i~-~lp~~i~~L--~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~ 234 (815)
.+++|++|+|++|.++ ..+..++.+ .+|++|++++|..+. .++..+.++++|++|++++|.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS 175 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc
Confidence 5566666666666655 223445443 336666666663221 223323456666666666665
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.1e-20 Score=194.74 Aligned_cols=229 Identities=17% Similarity=0.139 Sum_probs=160.5
Q ss_pred cccceEEEec-cCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccc
Q 044882 513 SVLKKIEIRE-CDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRS 591 (815)
Q Consensus 513 ~~L~~L~l~~-~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~ 591 (815)
++|++|++++ |...+.+|..+ ..+++|++|++++|.....++. .+.++++|+.|++++|.+.+..|.
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~----------~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAI--AKLTQLHYLYITHTNVSGAIPD----------FLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGG--GGCTTCSEEEEEEECCEEECCG----------GGGGCTTCCEEECCSSEEESCCCG
T ss_pred CCCCeeeCCCCCcccccCChhH--hcCCCCCEEECcCCeeCCcCCH----------HHhCCCCCCEEeCCCCccCCcCCh
Confidence 4555666663 44444555555 5677777777777744322221 145567778888888888877888
Q ss_pred ccCCCCCCceEEeccCCCcccccCCCCCCC-CcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC-CCCCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFPEGGLPCA-KLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE-DGLPTN 669 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~ 669 (815)
.+..+++|++|++++|.....+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|......+. .+.+++
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 888888888888888876667777777776 888888888888777888777776 88888888854333332 356788
Q ss_pred CceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcc-cCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 670 LQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMV-SFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 670 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
|+.|++++|...... ..+..+++|++|++++ +.+. .+|. .+..+++|+.|++++|+....+|.
T Consensus 223 L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~Ls~--N~l~~~~p~---------~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDL-----GKVGLSKNLNGLDLRN--NRIYGTLPQ---------GLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CSEEECCSSEECCBG-----GGCCCCTTCCEEECCS--SCCEECCCG---------GGGGCTTCCEEECCSSEEEEECCC
T ss_pred CCEEECCCCceeeec-----CcccccCCCCEEECcC--CcccCcCCh---------HHhcCcCCCEEECcCCcccccCCC
Confidence 888888888654321 2356778899999988 4444 4443 345678999999999654446775
Q ss_pred cCCCCCCCCeeeeCCCCCCcccC
Q 044882 749 SIVDLQNLASLYLGDCPKLKYFP 771 (815)
Q Consensus 749 ~~~~l~~L~~L~i~~c~~l~~l~ 771 (815)
. ..+++|+.|++++++.+...|
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEESTT
T ss_pred C-ccccccChHHhcCCCCccCCC
Confidence 4 889999999999987665443
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.4e-19 Score=196.47 Aligned_cols=233 Identities=18% Similarity=0.193 Sum_probs=187.0
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..++++++.|++++|......+..+ ..+++|++|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 56 ~~iP~~~~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~-i~~i~~~---------~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 56 REVPDGISTNTRLLNLHENQIQIIKVNSF--KHLRHLEILQLSRNH-IRTIEIG---------AFNGLANLNTLELFDNR 123 (440)
T ss_dssp SSCCSCCCTTCSEEECCSCCCCEECTTTT--SSCSSCCEEECCSSC-CCEECGG---------GGTTCSSCCEEECCSSC
T ss_pred CcCCCCCCCCCcEEEccCCcCCeeCHHHh--hCCCCCCEEECCCCc-CCccChh---------hccCCccCCEEECCCCc
Confidence 55666777889999999997544444444 789999999999984 3332222 25578899999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccc-ccCCCCCcCcEEecCCCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPK-GLHNLTSLQELTIGRGVELPSLKE 663 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 663 (815)
+.+..+..+..+++|++|++++|......+..+..+++|++|++++|...+.++. .+.++++|++|++++| .++.++.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc
Confidence 9988888899999999999999986655555788899999999999877776665 5889999999999999 6778888
Q ss_pred CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCC
Q 044882 664 DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL 743 (815)
Q Consensus 664 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l 743 (815)
...+++|++|++++|...... +..+.++++|+.|++++ +.+..++. ..+..+++|+.|+|++ +.+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~L~~--n~l~~~~~--------~~~~~l~~L~~L~L~~-N~l 267 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIR----PGSFQGLMHLQKLWMIQ--SQIQVIER--------NAFDNLQSLVEINLAH-NNL 267 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTT--CCCCEECT--------TSSTTCTTCCEEECTT-SCC
T ss_pred cCCCcccCEEECCCCccCccC----hhhhccCccCCEEECCC--CceeEECh--------hhhcCCCCCCEEECCC-CCC
Confidence 888899999999999654422 25788899999999998 67777765 4556789999999999 577
Q ss_pred ccccc-cCCCCCCCCeeeeCCCC
Q 044882 744 ERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 744 ~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
+.++. .+..+++|+.|+++++|
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSC
T ss_pred CccChhHhccccCCCEEEcCCCC
Confidence 77776 56789999999998865
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.7e-19 Score=196.60 Aligned_cols=233 Identities=20% Similarity=0.212 Sum_probs=186.3
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..+++++++|++++|......+..+ ..+++|+.|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 67 ~~iP~~~~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~-i~~~~~~---------~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 67 SEVPQGIPSNTRYLNLMENNIQMIQADTF--RHLHHLEVLQLGRNS-IRQIEVG---------AFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCCSCCCTTCSEEECCSSCCCEECTTTT--TTCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSC
T ss_pred CccCCCCCCCccEEECcCCcCceECHHHc--CCCCCCCEEECCCCc-cCCcChh---------hccCcccCCEEECCCCc
Confidence 45666777899999999997555445555 789999999999983 3322221 24577899999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccc-ccCCCCCcCcEEecCCCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPK-GLHNLTSLQELTIGRGVELPSLKE 663 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 663 (815)
+.+..+..+..+++|++|++++|......+..+..+++|++|++++|..++.++. .+..+++|++|++++| .++.++.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc
Confidence 9988888899999999999999986555555788899999999999877777765 5889999999999999 6777788
Q ss_pred CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCC
Q 044882 664 DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNL 743 (815)
Q Consensus 664 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l 743 (815)
...+++|++|++++|....... ..+.++++|+.|++++ +.+..++. ..+..+++|+.|+|++ +.+
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~--n~l~~~~~--------~~~~~l~~L~~L~L~~-N~l 278 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRP----GSFHGLSSLKKLWVMN--SQVSLIER--------NAFDGLASLVELNLAH-NNL 278 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECG----GGGTTCTTCCEEECTT--SCCCEECT--------TTTTTCTTCCEEECCS-SCC
T ss_pred ccccccccEEECcCCcCcccCc----ccccCccCCCEEEeCC--CcCceECH--------HHhcCCCCCCEEECCC-CcC
Confidence 8888999999999997654222 4688899999999998 66666655 3456788999999999 577
Q ss_pred ccccc-cCCCCCCCCeeeeCCCC
Q 044882 744 ERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 744 ~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
+.+|. .+..+++|++|+++++|
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 279 SSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SCCCTTSSTTCTTCCEEECCSSC
T ss_pred CccChHHhccccCCCEEEccCCC
Confidence 77776 56789999999998865
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=3.6e-19 Score=194.01 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=59.8
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
.+.++.++..++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..++ ..+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 4567777777888887664 5788888888888866 467788888888888887 455444 5677788888888887
Q ss_pred CCcccccc
Q 044882 233 TKSLEEMP 240 (815)
Q Consensus 233 ~~~l~~~p 240 (815)
|. +..+|
T Consensus 133 n~-l~~~~ 139 (452)
T 3zyi_A 133 NW-LTVIP 139 (452)
T ss_dssp SC-CSBCC
T ss_pred Cc-CCccC
Confidence 76 44443
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=4.1e-19 Score=192.86 Aligned_cols=82 Identities=24% Similarity=0.378 Sum_probs=60.5
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
.+.++.++..++.+|..+. .++++|+|++|.|+.++ ..+.++++|++|+|++| .+..++ ..+.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 4567777778888887665 57888888888888765 67788888888888888 555544 5677788888888887
Q ss_pred CCcccccc
Q 044882 233 TKSLEEMP 240 (815)
Q Consensus 233 ~~~l~~~p 240 (815)
|. +..+|
T Consensus 122 n~-l~~~~ 128 (440)
T 3zyj_A 122 NR-LTTIP 128 (440)
T ss_dssp SC-CSSCC
T ss_pred Cc-CCeeC
Confidence 76 44443
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=9.9e-19 Score=194.86 Aligned_cols=59 Identities=27% Similarity=0.395 Sum_probs=50.3
Q ss_pred ccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCccccccc
Q 044882 176 RYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPV 241 (815)
Q Consensus 176 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 241 (815)
.++++|++++|.++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|. +..+|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC
Confidence 469999999999999998776 79999999999 7888887 57899999999987 666654
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.81 E-value=1.5e-22 Score=222.31 Aligned_cols=81 Identities=12% Similarity=0.129 Sum_probs=51.0
Q ss_pred CcccEEEcCCCCccccC--ccccCCccCCEEecCCCCCC-----ccchhhhccCCCcEEeccCCccccc-cchhh-cCcC
Q 044882 153 QRLRAFSLRGYHIFELP--DSIGDLRYLRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCDRLKK-LCADM-GNLA 223 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i-~~L~ 223 (815)
++|++|++++++++..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++| .+.. .+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 45777777777766432 23566777777777777776 34566667777777777777 3432 22223 2344
Q ss_pred ----CcceeeccCCC
Q 044882 224 ----KLHHLKNSNTK 234 (815)
Q Consensus 224 ----~L~~L~l~~~~ 234 (815)
+|++|++++|.
T Consensus 82 ~~~~~L~~L~L~~n~ 96 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC 96 (461)
T ss_dssp STTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCC
Confidence 57777777776
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.4e-21 Score=221.94 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=63.9
Q ss_pred CCCcccEEEcCCCCccc-cCccccCC--ccCCEEecCCCC-CC--ccchhhhccCCCcEEeccCCccccc----cchhhc
Q 044882 151 KLQRLRAFSLRGYHIFE-LPDSIGDL--RYLRYLNLSGTE-IR--TLPESVNKLYNLHSLLLEDCDRLKK----LCADMG 220 (815)
Q Consensus 151 ~l~~Lr~L~L~~~~i~~-lp~~~~~l--~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~i~ 220 (815)
.+++|++|+|++|.++. .+..+... .+|++|+|++|. +. .++..+.++++|++|+|++|..... ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 67778888888877653 23444443 348888888775 32 2334445778888888888732111 334445
Q ss_pred CcCCcceeeccCCCcc----cccccccccccccccccc
Q 044882 221 NLAKLHHLKNSNTKSL----EEMPVGIGRLTSLQTLCN 254 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l----~~~p~~i~~L~~L~~L~~ 254 (815)
.+++|++|++++|..- ..++..+.++++|++|+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 6778888888777622 233344556777777743
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=3e-22 Score=220.00 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=61.7
Q ss_pred ccCCCcccEEEcCCCCcc-----ccCccccCCccCCEEecCCCCCCcc-chhh-hccC----CCcEEeccCCcccc----
Q 044882 149 LFKLQRLRAFSLRGYHIF-----ELPDSIGDLRYLRYLNLSGTEIRTL-PESV-NKLY----NLHSLLLEDCDRLK---- 213 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i-~~L~----~L~~L~L~~~~~l~---- 213 (815)
+..+++|++|++++|.++ .++..+..+++|++|++++|.+... +..+ ..+. +|++|++++| .+.
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence 466777888888888876 4566777778888888888887642 3333 3455 5888888888 444
Q ss_pred -ccchhhcCcCCcceeeccCCC
Q 044882 214 -KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 214 -~lp~~i~~L~~L~~L~l~~~~ 234 (815)
.+|..+..+++|++|++++|.
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB
T ss_pred HHHHHHHccCCceeEEECCCCc
Confidence 567777888888888888876
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=7.5e-19 Score=181.00 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=45.3
Q ss_pred EEEcCCCCccccCccccCCccCCEEecCCCCCCccchh-hhccCCCcEEeccCCcccccc---chhhcCcCCcceeeccC
Q 044882 157 AFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCDRLKKL---CADMGNLAKLHHLKNSN 232 (815)
Q Consensus 157 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~i~~L~~L~~L~l~~ 232 (815)
.++++++.++.+|..+. .+|++|++++|.++.+|.. ++++++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 45555555555555443 4566666666666655533 456666666666655 33322 44455556666666665
Q ss_pred CCccccccccccc
Q 044882 233 TKSLEEMPVGIGR 245 (815)
Q Consensus 233 ~~~l~~~p~~i~~ 245 (815)
|. +..+|..+..
T Consensus 88 n~-i~~l~~~~~~ 99 (306)
T 2z66_A 88 NG-VITMSSNFLG 99 (306)
T ss_dssp CS-EEEEEEEEET
T ss_pred Cc-cccChhhcCC
Confidence 55 4444433333
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=7e-19 Score=185.17 Aligned_cols=259 Identities=15% Similarity=0.109 Sum_probs=187.9
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
+.+|..++++|++|++++|.. +.++...+ ..+++|++|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 44 ~~iP~~~~~~L~~L~l~~n~i-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~---------~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 44 NSIPSGLTEAVKSLDLSNNRI-TYISNSDL-QRCVNLQALVLTSNG-INTIEED---------SFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SSCCTTCCTTCCEEECTTSCC-CEECTTTT-TTCTTCCEEECTTSC-CCEECTT---------TTTTCTTCCEEECCSSC
T ss_pred ccccccccccCcEEECCCCcC-cccCHHHh-ccCCCCCEEECCCCc-cCccCHh---------hcCCCCCCCEEECCCCc
Confidence 455666667899999998874 44554322 788999999999883 3332221 14567889999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccC--CCCCCCCcceEEeccccccc-ccccccCCCCCcCcEEecCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPE--GGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSLQELTIGRGVELPSL 661 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~ 661 (815)
+++..+..+.++++|++|++++|... .+|. .+..+++|++|++++|...+ ..+..+..+++|++|++++|......
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC
Confidence 98877777889999999999999754 5554 67889999999999995444 44567889999999999999544433
Q ss_pred CC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 662 KE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 662 ~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
+. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..++.. .+ ......+.++.++++++
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~--n~l~~~~~~----~l-~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHILLLE----IFVDVTSSVECLELRD--TDLDTFHFS----EL-STGETNSLIKKFTFRNV 259 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCSTTHHH----HHHHHTTTEEEEEEES--CBCTTCCCC-----------CCCCCCEEEEESC
T ss_pred HHHHhccccCCeecCCCCccccchh----hhhhhcccccEEECCC--Ccccccccc----cc-ccccccchhhccccccc
Confidence 33 3677899999999997533221 2355689999999998 566665441 11 01134567888888875
Q ss_pred CC----CccccccCCCCCCCCeeeeCCCCCCcccCCC--CCCCccceeeecCCc
Q 044882 741 PN----LERLSSSIVDLQNLASLYLGDCPKLKYFPEK--GLPSSLLQLDIWGCP 788 (815)
Q Consensus 741 ~~----l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 788 (815)
.. +..+|..+..+++|++|++++| +++.+|.. ...++|++|++++||
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 32 2346777888999999999985 78888874 346899999999876
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=5.2e-20 Score=190.24 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=52.7
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccc-cccccccCCCCCcCcEEecCCCCCC
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL-EALPKGLHNLTSLQELTIGRGVELP 659 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~ 659 (815)
+..+++|++|++++|. +..+|..+..+++|+.|++++|++. +.++..+..+++|+.|++++|..++
T Consensus 210 ~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 210 FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 5567888888888886 4467878888889999999999887 6777788888899999888765444
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=1.7e-18 Score=178.43 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=84.9
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
+.+|...+++|++|++++|. ++.++...+ ..+++|++|++++|.. +.+.. . ...+.++++|+.|++++|.
T Consensus 20 ~~ip~~~~~~l~~L~L~~n~-l~~i~~~~~-~~l~~L~~L~L~~n~l-~~~~~--~-----~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 20 TSVPTGIPSSATRLELESNK-LQSLPHGVF-DKLTQLTKLSLSSNGL-SFKGC--C-----SQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp SSCCSCCCTTCCEEECCSSC-CCCCCTTTT-TTCTTCSEEECCSSCC-CEEEE--E-----EHHHHSCSCCCEEECCSCS
T ss_pred ccCCCCCCCCCCEEECCCCc-cCccCHhHh-hccccCCEEECCCCcc-CcccC--c-----ccccccccccCEEECCCCc
Confidence 45555666778888888876 445555433 6778888888877732 11100 0 0012234555555555555
Q ss_pred cccCcccccCCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCC-CCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELP-SLK 662 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~ 662 (815)
+.+ .+..+..+++|++|++++|......+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.... .++
T Consensus 90 i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 543 23345556666666666654322222 245555566666666665555555555555566666665553222 122
Q ss_pred C-CCCCCCCceEEEcCCc
Q 044882 663 E-DGLPTNLQSLTIEGNM 679 (815)
Q Consensus 663 ~-~~~~~~L~~L~l~~~~ 679 (815)
. ...+++|++|++++|.
T Consensus 169 ~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp SCCTTCTTCCEEECTTSC
T ss_pred hHHhhCcCCCEEECCCCC
Confidence 1 2334444444444443
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.6e-18 Score=171.16 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=150.9
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecc-cccccccccccCCCCCcCcEE
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISS-CKRLEALPKGLHNLTSLQELT 651 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 651 (815)
+++.+++++|.+.+..+..+.++++|++|++++|..++.++. .+..+++|++|++++ |.+.+..+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 455566666666666666788888999999998874555554 677888999999998 676555556788889999999
Q ss_pred ecCCCCCCCCCCCCCCCCCc---eEEEcCCcchhhhhhhcCcCcccCCCcc-EEEEeccCCCcccCCCCccccccccCCC
Q 044882 652 IGRGVELPSLKEDGLPTNLQ---SLTIEGNMEIWKSMIERGRGFHRFSSLR-QLTIINCDDDMVSFPPKADDKRLGTALP 727 (815)
Q Consensus 652 l~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 727 (815)
+++| .++.+|..+.+++|+ +|++++|+.+..... ..+.++++|+ .|++++ +.+..++. ..+.
T Consensus 112 l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~---~~~~~l~~L~~~L~l~~--n~l~~i~~--------~~~~ 177 (239)
T 2xwt_C 112 IFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYN--NGFTSVQG--------YAFN 177 (239)
T ss_dssp EEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECT---TTTTTTBSSEEEEECCS--CCCCEECT--------TTTT
T ss_pred CCCC-CCccccccccccccccccEEECCCCcchhhcCc---ccccchhcceeEEEcCC--CCCcccCH--------hhcC
Confidence 9998 455577666777777 999999843332221 4578899999 999998 67778876 2334
Q ss_pred CCCccceEEecCCCCCccccc-cCCCC-CCCCeeeeCCCCCCcccCCCCCCCccceeeecCCcch
Q 044882 728 LPASLTSLWISGFPNLERLSS-SIVDL-QNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCPLI 790 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 790 (815)
. ++|+.|++++|..++.+++ .+..+ ++|++|++++ +.++.+|.. .+++|+.|++++++.+
T Consensus 178 ~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 178 G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 4 7999999999667888875 67888 9999999998 688888876 5679999999998754
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.8e-20 Score=213.15 Aligned_cols=406 Identities=13% Similarity=0.090 Sum_probs=193.5
Q ss_pred cCCccCCEEecCCCCCCc-cchhhh-ccCCCcEEeccCCccccc--cchhhcCcCCcceeeccCCCccccc-cccccccc
Q 044882 173 GDLRYLRYLNLSGTEIRT-LPESVN-KLYNLHSLLLEDCDRLKK--LCADMGNLAKLHHLKNSNTKSLEEM-PVGIGRLT 247 (815)
Q Consensus 173 ~~l~~L~~L~L~~~~i~~-lp~~i~-~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~-p~~i~~L~ 247 (815)
..+++|++|+|++|.+.. .+..+. .+++|++|++++|..+.. ++..+.++++|++|++++|. +... +..+..+
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~- 179 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF- 179 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS-
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH-
Confidence 456788888888888773 345554 688888888888855544 55555678888888888876 3321 1111100
Q ss_pred ccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCCchhhHHHH
Q 044882 248 SLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSSREAEIEKD 327 (815)
Q Consensus 248 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 327 (815)
...+++|++|+++++.. .... .
T Consensus 180 -------------------------------------------------~~~~~~L~~L~l~~~~~----~~~~-----~ 201 (594)
T 2p1m_B 180 -------------------------------------------------PDTYTSLVSLNISCLAS----EVSF-----S 201 (594)
T ss_dssp -------------------------------------------------CTTCCCCCEEECTTCCS----CCCH-----H
T ss_pred -------------------------------------------------hhcCCcCcEEEecccCC----cCCH-----H
Confidence 11223333443332210 0000 0
Q ss_pred HhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccCCC------ceec
Q 044882 328 VLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGMSR------VKRL 400 (815)
Q Consensus 328 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~~~------~~~~ 400 (815)
. ++.... .+++|++|++++|...+.++ .+..+++|++|.+..+.. +..+
T Consensus 202 ~----------------------l~~l~~--~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 202 A----------------------LERLVT--RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp H----------------------HHHHHH--HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred H----------------------HHHHHH--hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 0 000001 25788999998885444444 456778999999876532 0111
Q ss_pred CccccCCCCCCCCCCccee-eeccccccccccccCCCCCcccCCCcceeeeccCcccccC-C---CCCCCCccEEEEecc
Q 044882 401 GSEFYGNDSPIPFLCLETL-RFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGT-F---PEHLPALEMLVIEGC 475 (815)
Q Consensus 401 ~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-l---p~~l~~L~~L~l~~~ 475 (815)
...+ ..+++|+.+ .+.+... .... .....+++|++|++++|. +++. + ...+++|++|++.+|
T Consensus 258 ~~~l------~~~~~L~~Ls~~~~~~~--~~l~----~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 258 SVAL------SGCKELRCLSGFWDAVP--AYLP----AVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHH------HTCTTCCEEECCBTCCG--GGGG----GGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHH------hcCCCcccccCCcccch--hhHH----HHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 1111 115566665 2222111 0000 111146888888888875 4421 1 146778888888877
Q ss_pred cC---ccccCCCCCCcceEEeCCC--------CccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceE
Q 044882 476 EE---LLVSVTSLPALCKFISGGC--------KKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDM 544 (815)
Q Consensus 476 ~~---l~~~~~~~~~L~~L~l~~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L 544 (815)
-. +......+++|+.|++.+| ..+.......+... .++|++|.+..+. ++......+...+++|+.|
T Consensus 325 ~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~-~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG-CPKLESVLYFCRQ-MTNAALITIARNRPNMTRF 402 (594)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH-CTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh-chhHHHHHHhcCC-cCHHHHHHHHhhCCCccee
Confidence 21 1111123566666666332 22211111000000 1344444332222 2211111111233444444
Q ss_pred EEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCC-CCCCc
Q 044882 545 SIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGL-PCAKL 623 (815)
Q Consensus 545 ~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~l~~L 623 (815)
+++.+.. .+|.+++...+. +..+..+..+++|++|++++ ......+..+. .+++|
T Consensus 403 ~L~~~~~------------------~~~~~l~~~~~~-----~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L 458 (594)
T 2p1m_B 403 RLCIIEP------------------KAPDYLTLEPLD-----IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKM 458 (594)
T ss_dssp EEEESST------------------TCCCTTTCCCTH-----HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTC
T ss_pred EeecccC------------------CCcccccCCchh-----hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhc
Confidence 4441000 022222211110 00111234566777777765 22222222222 25677
Q ss_pred ceEEeccccccccccccc-CCCCCcCcEEecCCCCCCCCC---CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCcc
Q 044882 624 TRLEISSCKRLEALPKGL-HNLTSLQELTIGRGVELPSLK---EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLR 699 (815)
Q Consensus 624 ~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 699 (815)
++|++++|.+.+.....+ ..+++|++|++++|+. +... ....+++|++|++++|+....... .....++.|+
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~~lp~l~ 534 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACK---LLGQKMPKLN 534 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHH---HHHHHCTTEE
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH---HHHHhCCCCE
Confidence 777777777544333333 4577777777777754 2111 112356788888888765332221 1124566666
Q ss_pred EEEEec
Q 044882 700 QLTIIN 705 (815)
Q Consensus 700 ~L~l~~ 705 (815)
...+..
T Consensus 535 i~~~~~ 540 (594)
T 2p1m_B 535 VEVIDE 540 (594)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 555544
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.4e-18 Score=176.91 Aligned_cols=179 Identities=23% Similarity=0.319 Sum_probs=103.3
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccc-cCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSF-PEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.+++|+.|++++|.+.+..+..+.++++|++|++++|.....+ |..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 3444455555555555444555666666666666666533333 445566666666666666665555555666666666
Q ss_pred EEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCC
Q 044882 650 LTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALP 727 (815)
Q Consensus 650 L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 727 (815)
|++++|. ++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..+.. ..+.
T Consensus 134 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~--n~l~~~~~--------~~~~ 198 (285)
T 1ozn_A 134 LYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPE----RAFRGLHSLDRLLLHQ--NRVAHVHP--------HAFR 198 (285)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCS--SCCCEECT--------TTTT
T ss_pred EECCCCc-ccccCHhHhccCCCccEEECCCCcccccCH----HHhcCccccCEEECCC--CcccccCH--------hHcc
Confidence 6666663 333332 2455666666666664332111 2456667777777776 34444432 2345
Q ss_pred CCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCC
Q 044882 728 LPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
.+++|+.|++++ +.++.++. .+..+++|++|++++++
T Consensus 199 ~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 199 DLGRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCS-SCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CcccccEeeCCC-CcCCcCCHHHcccCcccCEEeccCCC
Confidence 567777777777 45555554 46777777777777753
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=4.1e-19 Score=183.06 Aligned_cols=250 Identities=16% Similarity=0.129 Sum_probs=169.5
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccc--cceEecccccccccccccccccccCcc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLS--LKNLLIHKCDNIRTLTVEEGIQSSSSR 590 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~--L~~l~l~~~~~L~~l~ls~n~~~~~~~ 590 (815)
.+|+++++++|.. .+|..+. ..|+.|+++++.. +.. .+|.. ...+.+.++++|+.|++++|.+.+..|
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~----~~L~~L~L~~n~l-~~~---~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFT----DIIKSLSLKRLTV-RAA---RIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHH----HHHHHCCCCEEEE-EEE---ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCceeEeeccccc--ccHHHHH----HHHhhcccccccc-cCC---CcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 4567777777765 5555442 1166777766632 110 11100 001112246788888888888888777
Q ss_pred ccc--CCCCCCceEEeccCCCcccccCCCCCC-----CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCC---
Q 044882 591 SGL--HNLRQLQEISIRRCGNLVSFPEGGLPC-----AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPS--- 660 (815)
Q Consensus 591 ~~~--~~l~~L~~L~l~~~~~l~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--- 660 (815)
..+ ..+++|++|++++|..... |..+..+ ++|++|++++|.+.+..+..++.+++|++|++++|...+.
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 776 7888899999998875444 6555544 7899999999988777778888889999999998864432
Q ss_pred CCCC--CCCCCCceEEEcCCcchhhh-hhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEe
Q 044882 661 LKED--GLPTNLQSLTIEGNMEIWKS-MIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWI 737 (815)
Q Consensus 661 ~~~~--~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l 737 (815)
++.. +.+++|++|++++|...... ... ..+..+++|+.|++++ +.+...+.. ..+..+++|+.|++
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~--N~l~~~~~~-------~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCS--ALAAARVQLQGLDLSH--NSLRDAAGA-------PSCDWPSQLNSLNL 260 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHH--HHHHTTCCCSEEECTT--SCCCSSCCC-------SCCCCCTTCCEEEC
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHH--HHHhcCCCCCEEECCC--CcCCcccch-------hhhhhcCCCCEEEC
Confidence 1122 56788999999988754211 111 2345778999999998 555554320 12345689999999
Q ss_pred cCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCc
Q 044882 738 SGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 738 ~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
++ +.++.+|..+. ++|++|++++ ++++.+|.....++|++|++++++
T Consensus 261 s~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 261 SF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp TT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCTTTSCEEEEEECTTCT
T ss_pred CC-CccChhhhhcc--CCceEEECCC-CCCCCChhHhhCCCCCEEeccCCC
Confidence 99 56778887666 8999999998 478888775556889999998876
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.7e-17 Score=168.74 Aligned_cols=201 Identities=18% Similarity=0.120 Sum_probs=160.6
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccc-cccccccccCCCCCcCcEE
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK-RLEALPKGLHNLTSLQELT 651 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 651 (815)
++++.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 456666777777777777789999999999999998766668889999999999999998 5555577899999999999
Q ss_pred ecCCCCCCCCCC-CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCC
Q 044882 652 IGRGVELPSLKE-DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPA 730 (815)
Q Consensus 652 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 730 (815)
+++|......+. ...+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~--n~l~~~~~--------~~~~~l~ 177 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD----DTFRDLGNLTHLFLHG--NRISSVPE--------RAFRGLH 177 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCEECT--------TTTTTCT
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH----hHhccCCCccEEECCC--CcccccCH--------HHhcCcc
Confidence 999954433333 3678999999999997543211 4578899999999998 67777776 3456789
Q ss_pred ccceEEecCCCCCccc-cccCCCCCCCCeeeeCCCCCCcccCC--CCCCCccceeeecCCcc
Q 044882 731 SLTSLWISGFPNLERL-SSSIVDLQNLASLYLGDCPKLKYFPE--KGLPSSLLQLDIWGCPL 789 (815)
Q Consensus 731 ~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~--~~~~~~L~~L~i~~c~~ 789 (815)
+|+.|++++| .++.+ |..+..+++|++|++++| .++.++. ....++|+.|+++++|-
T Consensus 178 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 178 SLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 9999999995 45555 678999999999999995 7777775 23457999999999874
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=6e-21 Score=217.02 Aligned_cols=84 Identities=20% Similarity=0.189 Sum_probs=54.2
Q ss_pred cCCCcccEEEcCCCCcccc-Ccccc-CCccCCEEecCCC-CCCc--cchhhhccCCCcEEeccCCccccc-----cchhh
Q 044882 150 FKLQRLRAFSLRGYHIFEL-PDSIG-DLRYLRYLNLSGT-EIRT--LPESVNKLYNLHSLLLEDCDRLKK-----LCADM 219 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~l-p~~~~-~l~~L~~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~i 219 (815)
..+++|++|+|+++.++.. +..+. .+++|++|++++| .+.. ++..+.++++|++|++++|. +.. ++...
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 4567788888887776632 34443 5678888888877 4553 45555677888888888773 322 23323
Q ss_pred cCcCCcceeeccCCC
Q 044882 220 GNLAKLHHLKNSNTK 234 (815)
Q Consensus 220 ~~L~~L~~L~l~~~~ 234 (815)
..+++|++|++++|.
T Consensus 181 ~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA 195 (594)
T ss_dssp TTCCCCCEEECTTCC
T ss_pred hcCCcCcEEEecccC
Confidence 466678888887774
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=4.5e-19 Score=183.19 Aligned_cols=211 Identities=11% Similarity=0.049 Sum_probs=92.0
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGL 593 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~ 593 (815)
+|++|++++|......+..+ ..+++|+.|++++|...... .+..+++|+.|++++|.+.+..
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~------------~~~~l~~L~~L~Ls~n~l~~l~---- 96 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADL--APFTKLELLNLSSNVLYETL------------DLESLSTLRTLDLNNNYVQELL---- 96 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHH--TTCTTCCEEECTTSCCEEEE------------EETTCTTCCEEECCSSEEEEEE----
T ss_pred CCCEEECcCCccCcCCHHHh--hCCCcCCEEECCCCcCCcch------------hhhhcCCCCEEECcCCcccccc----
Confidence 45555555554332222233 45555555555555321110 1334444444444444444322
Q ss_pred CCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC--CCCCCCc
Q 044882 594 HNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED--GLPTNLQ 671 (815)
Q Consensus 594 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~ 671 (815)
..++|++|++++|......+.. +++|++|++++|.+.+..+..+..+++|++|++++|......+.. ..+++|+
T Consensus 97 -~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 97 -VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp -ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred -CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 1245555555555433222221 344555555555544444444444555555555555222111111 1234555
Q ss_pred eEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCC
Q 044882 672 SLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIV 751 (815)
Q Consensus 672 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 751 (815)
+|++++|..... .....+++|++|++++ +.+..++. .+..+++|+.|++++ +.++.+|..+.
T Consensus 173 ~L~L~~N~l~~~------~~~~~l~~L~~L~Ls~--N~l~~l~~---------~~~~l~~L~~L~L~~-N~l~~l~~~~~ 234 (317)
T 3o53_A 173 HLNLQYNFIYDV------KGQVVFAKLKTLDLSS--NKLAFMGP---------EFQSAAGVTWISLRN-NKLVLIEKALR 234 (317)
T ss_dssp EEECTTSCCCEE------ECCCCCTTCCEEECCS--SCCCEECG---------GGGGGTTCSEEECTT-SCCCEECTTCC
T ss_pred EEECCCCcCccc------ccccccccCCEEECCC--CcCCcchh---------hhcccCcccEEECcC-CcccchhhHhh
Confidence 555555542221 1112245555555554 34444433 123345555555555 34455555555
Q ss_pred CCCCCCeeeeCCC
Q 044882 752 DLQNLASLYLGDC 764 (815)
Q Consensus 752 ~l~~L~~L~i~~c 764 (815)
.+++|+.|++++|
T Consensus 235 ~l~~L~~L~l~~N 247 (317)
T 3o53_A 235 FSQNLEHFDLRGN 247 (317)
T ss_dssp CCTTCCEEECTTC
T ss_pred cCCCCCEEEccCC
Confidence 5555555555554
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=8.1e-17 Score=158.95 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=114.0
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccc-c
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEE-G 583 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~-n 583 (815)
+.+|. ++.+|++|++++|. ++.++...+ ..+++|++|++++|..++.++... +.++++|+.|++++ |
T Consensus 24 ~~ip~-~~~~l~~L~l~~n~-l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~~---------f~~l~~L~~L~l~~~n 91 (239)
T 2xwt_C 24 QRIPS-LPPSTQTLKLIETH-LRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHS---------FYNLSKVTHIEIRNTR 91 (239)
T ss_dssp SSCCC-CCTTCCEEEEESCC-CSEECTTTT-TTCTTCCEEEEECCSSCCEECTTT---------EESCTTCCEEEEEEET
T ss_pred cccCC-CCCcccEEEEeCCc-ceEECHHHc-cCCCCCcEEeCCCCCCcceeCHhH---------cCCCcCCcEEECCCCC
Confidence 44455 56678888888876 344444222 567777777777775444333221 23444555555554 5
Q ss_pred ccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcc---eEEeccc-ccccccccccCCCCCcC-cEEecCCCCC
Q 044882 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLT---RLEISSC-KRLEALPKGLHNLTSLQ-ELTIGRGVEL 658 (815)
Q Consensus 584 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~ 658 (815)
.+.+..+..+.++++|++|++++|.. ..+|. +..+++|+ +|++++| .+.+..+..+.++++|+ +|++++| .+
T Consensus 92 ~l~~i~~~~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l 168 (239)
T 2xwt_C 92 NLTYIDPDALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GF 168 (239)
T ss_dssp TCCEECTTSEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CC
T ss_pred CeeEcCHHHhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CC
Confidence 55544444555555555555555542 22443 44444444 5555555 33332233345555555 5555555 22
Q ss_pred CCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCC-CccceEEe
Q 044882 659 PSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLP-ASLTSLWI 737 (815)
Q Consensus 659 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~l 737 (815)
+.++. ..+.. ++|+.|++++ +..+..++. ..+..+ ++|+.|++
T Consensus 169 ~~i~~--------------------------~~~~~-~~L~~L~L~~-n~~l~~i~~--------~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 169 TSVQG--------------------------YAFNG-TKLDAVYLNK-NKYLTVIDK--------DAFGGVYSGPSLLDV 212 (239)
T ss_dssp CEECT--------------------------TTTTT-CEEEEEECTT-CTTCCEECT--------TTTTTCSBCCSEEEC
T ss_pred cccCH--------------------------hhcCC-CCCCEEEcCC-CCCcccCCH--------HHhhccccCCcEEEC
Confidence 23322 22333 5666677666 224556654 234556 78888888
Q ss_pred cCCCCCccccccCCCCCCCCeeeeCCCCC
Q 044882 738 SGFPNLERLSSSIVDLQNLASLYLGDCPK 766 (815)
Q Consensus 738 ~~c~~l~~l~~~~~~l~~L~~L~i~~c~~ 766 (815)
++ +.++.+|.. .+++|+.|+++++..
T Consensus 213 ~~-N~l~~l~~~--~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 213 SQ-TSVTALPSK--GLEHLKELIARNTWT 238 (239)
T ss_dssp TT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred CC-CccccCChh--HhccCceeeccCccC
Confidence 88 677777754 678888888888754
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=6.5e-17 Score=163.61 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=57.0
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 34455555555555555555555555556666666655544444445555556666666655554444444555556666
Q ss_pred EEecCCCCCCC--CCC-CCCCCCCceEEEcCCc
Q 044882 650 LTIGRGVELPS--LKE-DGLPTNLQSLTIEGNM 679 (815)
Q Consensus 650 L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~~~ 679 (815)
|++++|. ++. +|. .+.+++|++|++++|.
T Consensus 129 L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 129 LNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECcCCc-cceecCchhhccCCCCCEEECCCCC
Confidence 6665553 222 121 2344555555555554
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=3.3e-18 Score=176.21 Aligned_cols=224 Identities=19% Similarity=0.188 Sum_probs=157.5
Q ss_pred cccceEEEeccCCc-ccCchhhh-----cCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccc
Q 044882 513 SVLKKIEIRECDAL-KSLPEAWM-----CGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l-~~~~~~~~-----~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~ 586 (815)
..|+.|++++|... ..++.... ...+++|++|++++|.....++.. + .+.++++|+.|++++|.+.
T Consensus 63 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~---~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP-----L---LEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC-----S---SSCCSCCCSEEEEESCBCS
T ss_pred HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH-----H---HHhcCCCccEEEccCCCCc
Confidence 44666666666542 22333220 015788888888888543332221 1 0256778888888888888
Q ss_pred cCcccccCCC-----CCCceEEeccCCCcccccCCCCCCCCcceEEecccccccc--ccccc--CCCCCcCcEEecCCCC
Q 044882 587 SSSRSGLHNL-----RQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEA--LPKGL--HNLTSLQELTIGRGVE 657 (815)
Q Consensus 587 ~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~~~~ 657 (815)
+. |..+..+ ++|++|++++|......|..+..+++|++|++++|++.+. ++..+ ..+++|++|++++| .
T Consensus 135 ~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~ 212 (312)
T 1wwl_A 135 TR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-G 212 (312)
T ss_dssp SS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-C
T ss_pred ch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-c
Confidence 77 6666665 8899999999887666667888889999999999987654 23333 78889999999998 4
Q ss_pred CCCCCCC-----CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 658 LPSLKED-----GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 658 ~~~~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
++.++.. ..+++|++|++++|....... . ..+..+++|+.|++++ +.+..+|. ...++|
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~--~~~~~l~~L~~L~Ls~--N~l~~ip~-----------~~~~~L 276 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAG-A--PSCDWPSQLNSLNLSF--TGLKQVPK-----------GLPAKL 276 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-C--SCCCCCTTCCEEECTT--SCCSSCCS-----------SCCSEE
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-h--hhhhhcCCCCEEECCC--CccChhhh-----------hccCCc
Confidence 4433221 255789999999887544221 1 3456678999999998 66777776 223899
Q ss_pred ceEEecCCCCCccccccCCCCCCCCeeeeCCC
Q 044882 733 TSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
+.|++++ +.++.+|. +..+++|++|+++++
T Consensus 277 ~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 277 SVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp EEEECCS-SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred eEEECCC-CCCCCChh-HhhCCCCCEEeccCC
Confidence 9999999 68888875 889999999999985
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.6e-17 Score=181.61 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=82.7
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccC-CCCCcCcEE
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLH-NLTSLQELT 651 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~ 651 (815)
++|+.|++++|.+.+..+. .+++|++|++++|......|..+..+++|++|++++|.+.+..|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4455555555555544332 234555555555554444444555555555556655555554444443 455555555
Q ss_pred ecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCc
Q 044882 652 IGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPAS 731 (815)
Q Consensus 652 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 731 (815)
+++| .++.++....+++|+.|++++|..... +..+..+++|+.|++++ +.+..+|. .+..+++
T Consensus 176 Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~L~~L~Ls~--N~l~~lp~---------~l~~l~~ 238 (487)
T 3oja_A 176 LQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFM-----GPEFQSAAGVTWISLRN--NKLVLIEK---------ALRFSQN 238 (487)
T ss_dssp CTTS-CCCEEECCCCCTTCCEEECCSSCCCEE-----CGGGGGGTTCSEEECTT--SCCCEECT---------TCCCCTT
T ss_pred cCCC-ccccccccccCCCCCEEECCCCCCCCC-----CHhHcCCCCccEEEecC--CcCcccch---------hhccCCC
Confidence 5555 333344444455555555555543321 11244455555555555 34444443 1234455
Q ss_pred cceEEecCCCCC-ccccccCCCCCCCCeeee
Q 044882 732 LTSLWISGFPNL-ERLSSSIVDLQNLASLYL 761 (815)
Q Consensus 732 L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~i 761 (815)
|+.|++++|+.. ..+|..+..++.|+.+++
T Consensus 239 L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 555555553322 234444444555554444
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=1.3e-16 Score=160.69 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=32.2
Q ss_pred CcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCC-CCCCCCCcCeeeeccC
Q 044882 337 NLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALP-SVGQLPSLKHLAVCGM 394 (815)
Q Consensus 337 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~l~~~ 394 (815)
+|+.|++++|.+..+|..... .+++|++|++++|.+.+..+ .++.+++|+.|++++|
T Consensus 158 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 158 NLTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 344444444444444443221 46677777777776665444 3566777777777666
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2e-16 Score=160.05 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=153.7
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..+|++|++|++++|......+..+ ..+++|++|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 20 ~~ip~~l~~~l~~L~ls~n~l~~~~~~~~--~~l~~L~~L~l~~n~-l~~~~~~---------~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 20 YKIPDNLPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRCE-IQTIEDG---------AYQSLSHLSTLILTGNP 87 (276)
T ss_dssp SSCCSSSCTTCCEEECTTCCCCEECTTTT--TTCTTCSEEECTTCC-CCEECTT---------TTTTCTTCCEEECTTCC
T ss_pred cccCCCCCCCccEEECCCCcccccCHhHh--ccccCCcEEECCCCc-CCccCHH---------HccCCcCCCEEECCCCc
Confidence 45666677889999999997444333344 789999999999993 3333322 24567899999999999
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccc-ccccccCCCCCcCcEEecCCCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLE-ALPKGLHNLTSLQELTIGRGVELPSLKE 663 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 663 (815)
+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++| .++.++.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCH
Confidence 999888899999999999999998666555578889999999999999876 36889999999999999999 4443321
Q ss_pred CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCcc-EEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCC
Q 044882 664 DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLR-QLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPN 742 (815)
Q Consensus 664 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 742 (815)
.. + ..+..++.|. .|++++ +.+..++. . .+ ...+|+.|++++ +.
T Consensus 167 ~~-------------------~----~~l~~L~~l~l~L~ls~--n~l~~~~~----~----~~-~~~~L~~L~L~~-n~ 211 (276)
T 2z62_A 167 TD-------------------L----RVLHQMPLLNLSLDLSL--NPMNFIQP----G----AF-KEIRLKELALDT-NQ 211 (276)
T ss_dssp GG-------------------G----HHHHTCTTCCEEEECCS--SCCCEECT----T----SS-CSCCEEEEECCS-SC
T ss_pred HH-------------------h----hhhhhccccceeeecCC--CcccccCc----c----cc-CCCcccEEECCC-Cc
Confidence 10 0 0112223333 566666 55555554 1 11 234788888888 45
Q ss_pred Cccccc-cCCCCCCCCeeeeCCC
Q 044882 743 LERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 743 l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
++.+|. .+..+++|++|+++++
T Consensus 212 l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 212 LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSCCCTTTTTTCCSCCEEECCSS
T ss_pred eeecCHhHhcccccccEEEccCC
Confidence 777776 4577888999998875
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=5.3e-16 Score=156.09 Aligned_cols=175 Identities=21% Similarity=0.212 Sum_probs=95.7
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
++.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 34444444444444444566666666666666653332223345566666666666665544444556666666666666
Q ss_pred CCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 655 GVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 655 ~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
| .++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..+++|
T Consensus 119 n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~--n~l~~~~~--------~~~~~l~~L 183 (270)
T 2o6q_A 119 N-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFDKLTSLKELRLYN--NQLKRVPE--------GAFDKLTEL 183 (270)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCSCCCT--------TTTTTCTTC
T ss_pred C-ccCeeCHHHhCcCcCCCEEECCCCcCCccCH----hHccCCcccceeEecC--CcCcEeCh--------hHhccCCCc
Confidence 6 3333332 1345566666666654322111 2355666666666666 45555544 233455677
Q ss_pred ceEEecCCCCCccccc-cCCCCCCCCeeeeCCCC
Q 044882 733 TSLWISGFPNLERLSS-SIVDLQNLASLYLGDCP 765 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~ 765 (815)
+.|++++ +.++.+|+ .+..+++|+.|++++++
T Consensus 184 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 184 KTLKLDN-NQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCC-CcCCcCCHHHhccccCCCEEEecCCC
Confidence 7777776 35555555 35666777777776643
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.69 E-value=3.8e-16 Score=158.40 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=99.6
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
+++.|++++|.+.+..+..+..+++|++|++++|.. ..++.. ..+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 445555555555555555666666666666666653 333332 45566666666666643 455556666666666666
Q ss_pred CCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCc
Q 044882 654 RGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPAS 731 (815)
Q Consensus 654 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 731 (815)
+| .++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..+++
T Consensus 109 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~--N~l~~l~~--------~~~~~l~~ 173 (290)
T 1p9a_G 109 FN-RLTSLPLGALRGLGELQELYLKGNELKTLPP----GLLTPTPKLEKLSLAN--NNLTELPA--------GLLNGLEN 173 (290)
T ss_dssp SS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCT----TTTTTCTTCCEEECTT--SCCSCCCT--------TTTTTCTT
T ss_pred CC-cCcccCHHHHcCCCCCCEEECCCCCCCccCh----hhcccccCCCEEECCC--CcCCccCH--------HHhcCcCC
Confidence 66 3333332 2455666666666664332111 3455666666666666 55556555 23345666
Q ss_pred cceEEecCCCCCccccccCCCCCCCCeeeeCCC
Q 044882 732 LTSLWISGFPNLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 732 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
|+.|++++ +.++.+|..+..+++|+.|+++++
T Consensus 174 L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 174 LDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp CCEEECCS-SCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCEEECCC-CcCCccChhhcccccCCeEEeCCC
Confidence 77777766 566666666666666777776654
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=4.8e-17 Score=177.91 Aligned_cols=238 Identities=11% Similarity=0.097 Sum_probs=139.1
Q ss_pred CCCCCcccEEEeecCCCCCCc-cCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCceecCccccCCCCCC
Q 044882 333 KPHENLEQFCISGYGGTKFPT-WFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVKRLGSEFYGNDSPI 411 (815)
Q Consensus 333 ~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 411 (815)
..+++|+.|+++++.+..++. .+. .+++|++|++++|.+.+..+ ++.+++|++|++++|. +..++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~---------- 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---------- 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----------
Confidence 344466666666666665543 343 46667777777666554443 6666666666666652 22211
Q ss_pred CCCCcceeeeccccccccccccCCCCCcccCCCcceeeeccCcccccCCCCCCCCccEEEEecccCccccCCCCCCcceE
Q 044882 412 PFLCLETLRFEDMQEWEDWIPLRSGQGVEGFPKLRELHILRCSKLKGTFPEHLPALEMLVIEGCEELLVSVTSLPALCKF 491 (815)
Q Consensus 412 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 491 (815)
..++|+.|++++ +.+.+..+..+++|+.|++++|.........
T Consensus 97 -----------------------------~~~~L~~L~L~~-N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~------- 139 (487)
T 3oja_A 97 -----------------------------VGPSIETLHAAN-NNISRVSCSRGQGKKNIYLANNKITMLRDLD------- 139 (487)
T ss_dssp -----------------------------ECTTCCEEECCS-SCCCCEEECCCSSCEEEECCSSCCCSGGGBC-------
T ss_pred -----------------------------CCCCcCEEECcC-CcCCCCCccccCCCCEEECCCCCCCCCCchh-------
Confidence 224555566655 3444322334445555555444321100000
Q ss_pred EeCCCCccccccccCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccc
Q 044882 492 ISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHK 571 (815)
Q Consensus 492 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~ 571 (815)
....++|++|++++|......|..+. ..+++|+.|++++|.. +.++. ...
T Consensus 140 -----------------~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l-~~~~~-----------~~~ 189 (487)
T 3oja_A 140 -----------------EGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFI-YDVKG-----------QVV 189 (487)
T ss_dssp -----------------GGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCC-CEEEC-----------CCC
T ss_pred -----------------hcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCcc-ccccc-----------ccc
Confidence 01125667777777765444444432 4678888888888742 22211 224
Q ss_pred ccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccc-cccccccCCCCCcCcE
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRL-EALPKGLHNLTSLQEL 650 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L 650 (815)
+++|+.|++++|.+++..+. +..+++|+.|++++|.. ..+|..+..+++|+.|++++|++. +.+|..+..+++|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l 267 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (487)
T ss_dssp CTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred CCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence 66777777777777765553 77778888888888764 457777777788888888888776 4566667777777777
Q ss_pred Eec
Q 044882 651 TIG 653 (815)
Q Consensus 651 ~l~ 653 (815)
+++
T Consensus 268 ~~~ 270 (487)
T 3oja_A 268 AKQ 270 (487)
T ss_dssp HHH
T ss_pred ecc
Confidence 775
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=8.8e-17 Score=164.87 Aligned_cols=171 Identities=17% Similarity=0.279 Sum_probs=93.7
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcce
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 227 (815)
.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++++++|++|++++| .+..+|. ++.+++|++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 34445555555555555555444 555555555555555555443 3455555555555555 4444443 555555555
Q ss_pred eeccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceee
Q 044882 228 LKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELL 307 (815)
Q Consensus 228 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~ 307 (815)
|++++|. +..++. ++.+ ++|+.|+
T Consensus 134 L~l~~n~-l~~~~~-l~~l------------------------------------------------------~~L~~L~ 157 (308)
T 1h6u_A 134 LYLDLNQ-ITNISP-LAGL------------------------------------------------------TNLQYLS 157 (308)
T ss_dssp EECCSSC-CCCCGG-GGGC------------------------------------------------------TTCCEEE
T ss_pred EECCCCc-cCcCcc-ccCC------------------------------------------------------CCccEEE
Confidence 5555554 333332 3333 3444444
Q ss_pred eEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcC
Q 044882 308 LRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLK 387 (815)
Q Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 387 (815)
++.|...+ +..+..+++|+.|++++|.+..++. +. .+++|++|++++|.+.+.. .+..+++|+
T Consensus 158 l~~n~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~ 220 (308)
T 1h6u_A 158 IGNAQVSD-------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLF 220 (308)
T ss_dssp CCSSCCCC-------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCC
T ss_pred ccCCcCCC-------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCC
Confidence 44443310 1114455677777777777666665 22 4778888888888766443 467778888
Q ss_pred eeeeccCC
Q 044882 388 HLAVCGMS 395 (815)
Q Consensus 388 ~L~l~~~~ 395 (815)
.|++++|+
T Consensus 221 ~L~l~~N~ 228 (308)
T 1h6u_A 221 IVTLTNQT 228 (308)
T ss_dssp EEEEEEEE
T ss_pred EEEccCCe
Confidence 88887764
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=9.1e-16 Score=160.69 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=110.9
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccccccc-cccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRT-LTVEEG 583 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~-l~ls~n 583 (815)
+.+|..+|+++++|++++|. ++.+|...+ .++++|++|++++|...+.++...+ .+++++.. +.++.|
T Consensus 22 t~iP~~l~~~l~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~i~~~i~~~~f---------~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 22 TEIPSDLPRNAIELRFVLTK-LRVIQKGAF-SGFGDLEKIEISQNDVLEVIEADVF---------SNLPKLHEIRIEKAN 90 (350)
T ss_dssp CSCCTTCCTTCSEEEEESCC-CSEECTTSS-TTCTTCCEEEEECCTTCCEECTTSB---------CSCTTCCEEEEEEET
T ss_pred CccCcCcCCCCCEEEccCCc-CCCcCHHHH-cCCCCCCEEECcCCCCCCccChhHh---------hcchhhhhhhcccCC
Confidence 45566666778888888875 455655432 6777788888877765544433222 22333322 233345
Q ss_pred ccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccc-ccCCC-CCcCcEEecCCCCCCCC
Q 044882 584 IQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPK-GLHNL-TSLQELTIGRGVELPSL 661 (815)
Q Consensus 584 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l-~~L~~L~l~~~~~~~~~ 661 (815)
.+.+..+..|..+++|++|++++|......+..+....++..|++.++..+..++. .+..+ ..++.|++++| .++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCC
Confidence 55555555555666666666666653333333344444555555555433333332 23333 24555555555 33333
Q ss_pred CCC-CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 662 KED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 662 ~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
+.. ....+|++|++.++..+..... ..|.++++|+.|++++ +.+..+|. ..+.+|+.|.+.+|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~---~~f~~l~~L~~LdLs~--N~l~~lp~-----------~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPN---DVFHGASGPVILDISR--TRIHSLPS-----------YGLENLKKLRARST 233 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCT---TTTTTEECCSEEECTT--SCCCCCCS-----------SSCTTCCEEECTTC
T ss_pred ChhhccccchhHHhhccCCcccCCCH---HHhccCcccchhhcCC--CCcCccCh-----------hhhccchHhhhccC
Confidence 322 2223445555544333321111 2344444455555544 34444443 22334444444444
Q ss_pred CCCccccccCCCCCCCCeeeeC
Q 044882 741 PNLERLSSSIVDLQNLASLYLG 762 (815)
Q Consensus 741 ~~l~~l~~~~~~l~~L~~L~i~ 762 (815)
+.++.+| .+..+++|+.+++.
T Consensus 234 ~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 234 YNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp TTCCCCC-CTTTCCSCCEEECS
T ss_pred CCcCcCC-CchhCcChhhCcCC
Confidence 4444444 24444444444443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=162.15 Aligned_cols=204 Identities=15% Similarity=0.088 Sum_probs=133.0
Q ss_pred ccccccccccccccccCccccc--CCCCCCceEEeccCCCccccc----CCCCCCCCcceEEecccccccccccccCCCC
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGL--HNLRQLQEISIRRCGNLVSFP----EGGLPCAKLTRLEISSCKRLEALPKGLHNLT 645 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 645 (815)
+++|+.|++++|.+.+..|..+ ..+++|++|++++|......+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3456666666666666666666 667777777777776554333 1233567788888888777666667777777
Q ss_pred CcCcEEecCCCCCCC--CC---CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccC-CCCccc
Q 044882 646 SLQELTIGRGVELPS--LK---EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSF-PPKADD 719 (815)
Q Consensus 646 ~L~~L~l~~~~~~~~--~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~ 719 (815)
+|++|++++|..... ++ ..+.+++|++|++++|......... ...+..+++|++|++++ +.+..+ |.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~~l~~L~~L~Ls~--N~l~~~~p~---- 242 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC-AALAAAGVQPHSLDLSH--NSLRATVNP---- 242 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH-HHHHHHTCCCSSEECTT--SCCCCCCCS----
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH-HHHHhcCCCCCEEECCC--CCCCccchh----
Confidence 888888887753321 11 1145677888888877653211100 01245678888888888 555554 33
Q ss_pred cccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCCCCCCCccceeeecCCc
Q 044882 720 KRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPEKGLPSSLLQLDIWGCP 788 (815)
Q Consensus 720 ~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~L~~L~i~~c~ 788 (815)
.+ ..+..+++|+.|++++ +.++.+|..+. ++|++|++++ ++++.+|....+++|+.|++++++
T Consensus 243 -~~-~~~~~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 243 -SA-PRCMWSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -CC-SSCCCCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCS-CCCCSCCCTTSCCCCSCEECSSTT
T ss_pred -hH-HhccCcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCC-CcCCCCchhhhCCCccEEECcCCC
Confidence 10 1112347899999988 67778887664 7899999987 477777665556888999988876
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.4e-15 Score=153.01 Aligned_cols=194 Identities=19% Similarity=0.187 Sum_probs=152.8
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
.+.++.+++.++.. |..+ .+++++|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45666666666643 3333 26899999999986555555788999999999999997766556678999999999999
Q ss_pred CCCCCCCCCC--CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 655 GVELPSLKED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 655 ~~~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
|. ++.++.. ..+++|++|++++|....... ..+..+++|+.|++++ +.+..++. ..+..+++|
T Consensus 95 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~--n~l~~~~~--------~~~~~l~~L 159 (270)
T 2o6q_A 95 NK-LQALPIGVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTYLSLGY--NELQSLPK--------GVFDKLTSL 159 (270)
T ss_dssp SC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTC
T ss_pred Cc-CCcCCHhHcccccCCCEEECCCCccCeeCH----HHhCcCcCCCEEECCC--CcCCccCH--------hHccCCccc
Confidence 94 5555532 578999999999997544221 4578999999999999 67777776 345678999
Q ss_pred ceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCCC--CCccceeeecCCc
Q 044882 733 TSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKGL--PSSLLQLDIWGCP 788 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 788 (815)
+.|++++ +.++.+++ .+..+++|++|++++| .++.++...+ .++|+.|+++++|
T Consensus 160 ~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 160 KELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 9999999 57777776 5889999999999995 8888887433 5799999998876
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=9.1e-16 Score=155.57 Aligned_cols=198 Identities=18% Similarity=0.179 Sum_probs=155.9
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++++.++.++|.++... ..+ .++++.|++++|......+..+..+++|++|++++|.+.+. +.. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCE
Confidence 34556666666666665433 233 36899999999987777777889999999999999997654 333 78999999
Q ss_pred EEecCCCCCCCCCCC-CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCC
Q 044882 650 LTIGRGVELPSLKED-GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPL 728 (815)
Q Consensus 650 L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (815)
|++++| .++.+|.. ..+++|++|++++|...... +..+.++++|+.|++++ +.+..++. ..+..
T Consensus 82 L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~--N~l~~~~~--------~~~~~ 146 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKG--NELKTLPP--------GLLTP 146 (290)
T ss_dssp EECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTT--SCCCCCCT--------TTTTT
T ss_pred EECCCC-cCCcCchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCC--CCCCccCh--------hhccc
Confidence 999999 55666653 67899999999999755422 14688999999999999 67878776 44567
Q ss_pred CCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCC-CCCccceeeecCCcc
Q 044882 729 PASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKG-LPSSLLQLDIWGCPL 789 (815)
Q Consensus 729 ~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~-~~~~L~~L~i~~c~~ 789 (815)
+++|+.|++++ +.++.+|. .+..+++|++|++++ ++++.+|... -.++|+.|+++++|-
T Consensus 147 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 147 TPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCCc
Confidence 89999999999 67889887 457899999999998 5888998733 346899999998763
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=5.8e-15 Score=154.57 Aligned_cols=238 Identities=16% Similarity=0.112 Sum_probs=161.7
Q ss_pred eeeeccCcccccCCCCCC-CCccEEEEecccCccccCCCCCCcceEEeCCCCccccccccCCCCCCccccceEEEeccCC
Q 044882 447 ELHILRCSKLKGTFPEHL-PALEMLVIEGCEELLVSVTSLPALCKFISGGCKKVVWKSAAGHPGSQNSVLKKIEIRECDA 525 (815)
Q Consensus 447 ~L~l~~c~~l~~~lp~~l-~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 525 (815)
+++.++ ++++ .+|..+ +++++|+++++..-......|.+ .++|++|++++|..
T Consensus 13 ~v~C~~-~~Lt-~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~------------------------l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 13 VFLCQE-SKVT-EIPSDLPRNAIELRFVLTKLRVIQKGAFSG------------------------FGDLEKIEISQNDV 66 (350)
T ss_dssp EEEEES-TTCC-SCCTTCCTTCSEEEEESCCCSEECTTSSTT------------------------CTTCCEEEEECCTT
T ss_pred EEEecC-CCCC-ccCcCcCCCCCEEEccCCcCCCcCHHHHcC------------------------CCCCCEEECcCCCC
Confidence 444444 4677 677554 46788888776432111111111 15677888888877
Q ss_pred cccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEec
Q 044882 526 LKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIR 605 (815)
Q Consensus 526 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~ 605 (815)
.+.++...+ .+++++.++.+.++..++.++... +.++++|+.+++++|.+.+..+..+....++..|++.
T Consensus 67 ~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l~~~~---------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 67 LEVIEADVF-SNLPKLHEIRIEKANNLLYINPEA---------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp CCEECTTSB-CSCTTCCEEEEEEETTCCEECTTS---------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred CCccChhHh-hcchhhhhhhcccCCcccccCchh---------hhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 666665443 677777776666555555544332 3466778888888888877776667777788888888
Q ss_pred cCCCcccccC-CCCCC-CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC--CCCCCCceEEEcCCcch
Q 044882 606 RCGNLVSFPE-GGLPC-AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED--GLPTNLQSLTIEGNMEI 681 (815)
Q Consensus 606 ~~~~l~~~~~-~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~l 681 (815)
++.....++. .+..+ ..++.|++++|.+. .++......++|++|++++|..++.++.. +.+++|++|++++|...
T Consensus 137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 7766776665 34444 46888999999865 45555556678999999887788888764 57789999999999644
Q ss_pred hhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecC
Q 044882 682 WKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISG 739 (815)
Q Consensus 682 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 739 (815)
.. ....+.+|+.|.+.+ +++++.+|. +..+++|+.+++.+
T Consensus 216 ~l-------p~~~~~~L~~L~~l~-~~~l~~lP~----------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 216 SL-------PSYGLENLKKLRARS-TYNLKKLPT----------LEKLVALMEASLTY 255 (350)
T ss_dssp CC-------CSSSCTTCCEEECTT-CTTCCCCCC----------TTTCCSCCEEECSC
T ss_pred cc-------ChhhhccchHhhhcc-CCCcCcCCC----------chhCcChhhCcCCC
Confidence 31 123467788888888 577888875 34678999999976
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=4.9e-16 Score=159.29 Aligned_cols=140 Identities=20% Similarity=0.333 Sum_probs=114.4
Q ss_pred CCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCc
Q 044882 97 SENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLR 176 (815)
Q Consensus 97 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~ 176 (815)
...++++.+..+... .++.+..+++|+.|.+.++. +. .+++ +..+++|++|++++|.++.+| .+..++
T Consensus 40 l~~L~~L~l~~~~i~---~l~~~~~l~~L~~L~L~~n~------i~-~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~ 107 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT---TIEGVQYLNNLIGLELKDNQ------IT-DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQ 107 (308)
T ss_dssp HHTCCEEECTTSCCC---CCTTGGGCTTCCEEECCSSC------CC-CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCT
T ss_pred cCCcCEEEeeCCCcc---CchhhhccCCCCEEEccCCc------CC-CChh-HccCCCCCEEEccCCcCCCch-hhcCCC
Confidence 456788887765433 34567789999999887764 22 2333 889999999999999999886 699999
Q ss_pred cCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCCCccccccccccccccccccc
Q 044882 177 YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 177 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
+|++|++++|.++.+|. ++.+++|++|++++| .+..+|. ++.+++|++|++++|. +..++. ++.+++|+.|+
T Consensus 108 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~ 179 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLK 179 (308)
T ss_dssp TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred CCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCCc-CCCChh-hcCCCCCCEEE
Confidence 99999999999999875 999999999999999 7888877 9999999999999997 666665 66676666663
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=1.3e-15 Score=153.23 Aligned_cols=85 Identities=16% Similarity=0.078 Sum_probs=38.7
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcE
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 650 (815)
.+++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 34444444444444444444444444555555555544333223334444455555555554443333334444455555
Q ss_pred EecCC
Q 044882 651 TIGRG 655 (815)
Q Consensus 651 ~l~~~ 655 (815)
++++|
T Consensus 163 ~l~~n 167 (272)
T 3rfs_A 163 DLSYN 167 (272)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55544
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=157.28 Aligned_cols=153 Identities=20% Similarity=0.147 Sum_probs=80.6
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccc--cc--cccCCCCCcCcEEecCCCCCCCCCCC-----C
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEA--LP--KGLHNLTSLQELTIGRGVELPSLKED-----G 665 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-----~ 665 (815)
.+++|++|++++|......+..+..+++|++|++++|++.+. ++ ..+..+++|++|++++| .++.++.. +
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence 344455555555544333334444445555555555543321 11 11234445555555555 23322221 2
Q ss_pred CCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCcc
Q 044882 666 LPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLER 745 (815)
Q Consensus 666 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~ 745 (815)
.+++|++|++++|......+ .....+..+++|++|++++ +.+..+|. ..+++|+.|++++ +.++.
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~--N~l~~lp~-----------~~~~~L~~L~Ls~-N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSF--AGLEQVPK-----------GLPAKLRVLDLSS-NRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCS--SCCCSCCS-----------CCCSCCSCEECCS-CCCCS
T ss_pred cCCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCC--CCCCchhh-----------hhcCCCCEEECCC-CcCCC
Confidence 33455555555554322110 0001222236777777776 56667765 2347999999999 67888
Q ss_pred ccccCCCCCCCCeeeeCCC
Q 044882 746 LSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 746 l~~~~~~l~~L~~L~i~~c 764 (815)
+|. +..+++|++|+++++
T Consensus 287 ~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 287 APQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCC-TTSCCCCSCEECSST
T ss_pred Cch-hhhCCCccEEECcCC
Confidence 764 788899999999985
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=4.4e-17 Score=170.44 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=134.5
Q ss_pred cccccccccccccccccC-cccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccc-ccc-ccccccCCCCCc
Q 044882 571 KCDNIRTLTVEEGIQSSS-SRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCK-RLE-ALPKGLHNLTSL 647 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~~L 647 (815)
.+++|+.+++++|.+.+. .+..+..+++|++|++++|......+..+..+++|++|++++|. +.+ .++..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 456677777777766654 55667778888888888887555566666667888888888884 333 355566778888
Q ss_pred CcEEecCCCCCCC--CCC-CCCCC-CCceEEEcCCc-chh-hhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccc
Q 044882 648 QELTIGRGVELPS--LKE-DGLPT-NLQSLTIEGNM-EIW-KSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKR 721 (815)
Q Consensus 648 ~~L~l~~~~~~~~--~~~-~~~~~-~L~~L~l~~~~-~l~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 721 (815)
++|++++|..++. ++. ...++ +|++|++++|. .+. ...+ ..+..+++|+.|++++| ..+.....
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~-~~l~~~~~------ 240 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDS-VMLKNDCF------ 240 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTC-TTCCGGGG------
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCC-CcCCHHHH------
Confidence 8888888854543 222 23456 88888888885 222 1111 24566788888888883 32322111
Q ss_pred cccCCCCCCccceEEecCCCCCccc-cccCCCCCCCCeeeeCCCCCCcccCCCC---CCCccceeeecCCcchHHHHhcc
Q 044882 722 LGTALPLPASLTSLWISGFPNLERL-SSSIVDLQNLASLYLGDCPKLKYFPEKG---LPSSLLQLDIWGCPLIEEKCRKD 797 (815)
Q Consensus 722 l~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~i~~c~~l~~l~~~~---~~~~L~~L~i~~c~~l~~~~~~~ 797 (815)
..+..+++|+.|++++|..+..- ...+..+++|++|++++| ++..+ +..+|+.|+++ |+.++......
T Consensus 241 --~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~-~n~l~~~~~~~ 312 (336)
T 2ast_B 241 --QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQIN-CSHFTTIARPT 312 (336)
T ss_dssp --GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEES-CCCSCCTTCSS
T ss_pred --HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEe-cccCccccCCc
Confidence 12345688888888887643221 124667888888888887 44322 23457778875 44455544444
Q ss_pred CCCcccc
Q 044882 798 GGQYWDL 804 (815)
Q Consensus 798 ~~~~w~~ 804 (815)
.+..|..
T Consensus 313 ~~~~~~~ 319 (336)
T 2ast_B 313 IGNKKNQ 319 (336)
T ss_dssp CSSTTCC
T ss_pred ccccccc
Confidence 4444444
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.3e-16 Score=166.90 Aligned_cols=120 Identities=16% Similarity=0.091 Sum_probs=88.7
Q ss_pred CceEEccccCCcCcCCCccccccccccCC--CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCc--cchhhhccC
Q 044882 124 HLRTFLPVTLSNSSRGHLAYSILPKLFKL--QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRT--LPESVNKLY 199 (815)
Q Consensus 124 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l--~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~--lp~~i~~L~ 199 (815)
.++.+.+.+.. +. +..+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. +|..+..++
T Consensus 48 ~~~~l~l~~~~------~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~ 118 (336)
T 2ast_B 48 LWQTLDLTGKN------LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118 (336)
T ss_dssp TSSEEECTTCB------CC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBC
T ss_pred hheeecccccc------CC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCC
Confidence 46666655432 21 2333445 78999999999988776667789999999999998873 788889999
Q ss_pred CCcEEeccCCccccccchhhcCcCCcceeeccCCCccc--ccccccccccccccc
Q 044882 200 NLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLE--EMPVGIGRLTSLQTL 252 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~--~~p~~i~~L~~L~~L 252 (815)
+|++|++++|......|..++++++|++|++++|..+. .+|..++.+++|++|
T Consensus 119 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 119 KLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 99999999995444678888899999999999984344 245445566666665
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=2.2e-14 Score=142.43 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=75.7
Q ss_pred cccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecC
Q 044882 575 IRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGR 654 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 654 (815)
++.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 37 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 116 (251)
T 3m19_A 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC
Confidence 34444444444444444555555555555555554444444455555555555555555444444455555555555555
Q ss_pred CCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccce
Q 044882 655 GVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTS 734 (815)
Q Consensus 655 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 734 (815)
| .++.++. ..+..+++|+.|++++ +.+..++. ..+..+++|+.
T Consensus 117 N-~l~~~~~--------------------------~~~~~l~~L~~L~Ls~--N~l~~~~~--------~~~~~l~~L~~ 159 (251)
T 3m19_A 117 N-QLKSLPS--------------------------GVFDRLTKLKELRLNT--NQLQSIPA--------GAFDKLTNLQT 159 (251)
T ss_dssp S-CCCCCCT--------------------------TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCE
T ss_pred C-cCCCcCh--------------------------hHhccCCcccEEECcC--CcCCccCH--------HHcCcCcCCCE
Confidence 5 3333322 1234444555555544 34444443 22334455555
Q ss_pred EEecCCCCCccccc-cCCCCCCCCeeeeCCC
Q 044882 735 LWISGFPNLERLSS-SIVDLQNLASLYLGDC 764 (815)
Q Consensus 735 L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c 764 (815)
|++++ +.++.+++ .+..+++|++|+++++
T Consensus 160 L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 160 LSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 55555 34444443 4555566666666553
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=7.6e-15 Score=148.98 Aligned_cols=169 Identities=20% Similarity=0.305 Sum_probs=110.3
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|++|++++|.+..+|. +..+++|++|++++|.++.++. ++++++|++|++++| .+..+|. ++.+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 456778888888888877753 7778888888888888887766 778888888888887 6666665 77888888888
Q ss_pred ccCCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeE
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLR 309 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 309 (815)
+++|. +..++ .++.+++|+.|+ ++
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~L~------------------------------------------------------l~ 142 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLESLY------------------------------------------------------LG 142 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCEEE------------------------------------------------------CC
T ss_pred CCCCc-CCCCh-hhcCCCCCCEEE------------------------------------------------------cc
Confidence 88876 55442 355555555542 22
Q ss_pred EccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCee
Q 044882 310 WTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHL 389 (815)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 389 (815)
+|..++ +..+..+++|+.|++++|.+..++. +. .+++|+.|++++|.+.. ++.+..+++|+.|
T Consensus 143 ~n~l~~-------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 143 NNKITD-------------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp SSCCCC-------------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred CCcCCc-------------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 221100 0122234455556666666555554 32 47777778877776544 4556777778888
Q ss_pred eeccCC
Q 044882 390 AVCGMS 395 (815)
Q Consensus 390 ~l~~~~ 395 (815)
++++|+
T Consensus 206 ~l~~n~ 211 (291)
T 1h6t_A 206 ELFSQE 211 (291)
T ss_dssp EEEEEE
T ss_pred ECcCCc
Confidence 877763
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=2.4e-14 Score=142.23 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=101.7
Q ss_pred CCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEc
Q 044882 597 RQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIE 676 (815)
Q Consensus 597 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 676 (815)
++++.|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++.++.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------------- 100 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPL------------- 100 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCT-------------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccCh-------------
Confidence 34555555555444444444455555555555555544444444455555555555555 2222211
Q ss_pred CCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCC
Q 044882 677 GNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQN 755 (815)
Q Consensus 677 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~ 755 (815)
..+..+++|+.|++++ +.+..++. ..+..+++|+.|++++ +.++.+++ .+..+++
T Consensus 101 -------------~~~~~l~~L~~L~L~~--N~l~~~~~--------~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 101 -------------GVFDHLTQLDKLYLGG--NQLKSLPS--------GVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTN 156 (251)
T ss_dssp -------------TTTTTCTTCCEEECCS--SCCCCCCT--------TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTT
T ss_pred -------------hHhcccCCCCEEEcCC--CcCCCcCh--------hHhccCCcccEEECcC-CcCCccCHHHcCcCcC
Confidence 3466778888888887 56777766 3456789999999999 68888887 6889999
Q ss_pred CCeeeeCCCCCCcccCCCC--CCCccceeeecCCcc
Q 044882 756 LASLYLGDCPKLKYFPEKG--LPSSLLQLDIWGCPL 789 (815)
Q Consensus 756 L~~L~i~~c~~l~~l~~~~--~~~~L~~L~i~~c~~ 789 (815)
|++|++++ +.++.++... .+++|+.|++++|+-
T Consensus 157 L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 157 LQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 99999998 4788887633 358999999999774
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=2.2e-16 Score=168.31 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=154.2
Q ss_pred cccceEEEeccCCcccCchhh--hcCCCCCcceEEEeccC--CchhhhccccccccceE--ecccccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPEAW--MCGTNSSLEDMSIRQCH--SLTYIAAVQLPLSLKNL--LIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~--~~~~l~~L~~L~l~~~~--~l~~~~~~~l~~~L~~l--~l~~~~~L~~l~ls~n~~~ 586 (815)
++|++|++++|......+..+ ....+++|+.|++++|. .+.. .+|..++.+ .+..+++|+.|++++|.+.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~----~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKD----EIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGG----GSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcccc----chhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 456777777765333322211 01567888888888873 2211 111111111 1346788888888888887
Q ss_pred c----CcccccCCCCCCceEEeccCCCccc----ccCCCCCC---------CCcceEEecccccc-cccc---cccCCCC
Q 044882 587 S----SSRSGLHNLRQLQEISIRRCGNLVS----FPEGGLPC---------AKLTRLEISSCKRL-EALP---KGLHNLT 645 (815)
Q Consensus 587 ~----~~~~~~~~l~~L~~L~l~~~~~l~~----~~~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l~ 645 (815)
+ .++..+..+++|++|++++|..... ++..+..+ ++|++|++++|.+. ..++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 7 4566778889999999999976432 22222223 79999999999876 3444 4566888
Q ss_pred CcCcEEecCCCCCC------CCC-CCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCcc
Q 044882 646 SLQELTIGRGVELP------SLK-EDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKAD 718 (815)
Q Consensus 646 ~L~~L~l~~~~~~~------~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 718 (815)
+|++|++++| .++ ..+ ....+++|++|++++|..........+..+..+++|+.|++++ +.+.....
T Consensus 188 ~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~--n~i~~~~~--- 261 (386)
T 2ca6_A 188 LLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND--CLLSARGA--- 261 (386)
T ss_dssp TCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT--CCCCHHHH---
T ss_pred CcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC--CCCchhhH---
Confidence 9999999999 444 223 3456789999999999864322222224577889999999998 33433211
Q ss_pred ccccccCC--CCCCccceEEecCCCCCcc-----ccccC-CCCCCCCeeeeCCCC
Q 044882 719 DKRLGTAL--PLPASLTSLWISGFPNLER-----LSSSI-VDLQNLASLYLGDCP 765 (815)
Q Consensus 719 ~~~l~~~~--~~~~~L~~L~l~~c~~l~~-----l~~~~-~~l~~L~~L~i~~c~ 765 (815)
..+...+ ..+++|+.|++++| .++. +|..+ .++++|++|++++|+
T Consensus 262 -~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 262 -AAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -HHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -HHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 0011122 23789999999995 4554 77766 568999999999863
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=7e-16 Score=164.37 Aligned_cols=239 Identities=15% Similarity=0.130 Sum_probs=136.0
Q ss_pred ccccCCCceEEccccCCcCcCCCcccc----ccccccCCCcccEEEcCCCCccc----cCccc-------cCCccCCEEe
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYS----ILPKLFKLQRLRAFSLRGYHIFE----LPDSI-------GDLRYLRYLN 182 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~----~~~~~~~l~~Lr~L~L~~~~i~~----lp~~~-------~~l~~L~~L~ 182 (815)
.+..+++|+.|.+.++. +... +...+..+++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 27 ~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 44567778888776643 3222 33345677888888888865442 23333 6778888888
Q ss_pred cCCCCCCc-----cchhhhccCCCcEEeccCCcccc-----ccchhhcCc---------CCcceeeccCCCcc-cccc--
Q 044882 183 LSGTEIRT-----LPESVNKLYNLHSLLLEDCDRLK-----KLCADMGNL---------AKLHHLKNSNTKSL-EEMP-- 240 (815)
Q Consensus 183 L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~-----~lp~~i~~L---------~~L~~L~l~~~~~l-~~~p-- 240 (815)
|++|.+.. +|..+.++++|++|+|++| .+. .++..+..+ ++|++|++++|..- ..+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 88888775 6777788888888888887 343 233334444 78888888887722 2333
Q ss_pred -cccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEccCCCCCCC
Q 044882 241 -VGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWTLSTDGSSS 319 (815)
Q Consensus 241 -~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 319 (815)
..+..+++|++|+..... +.. ..........+..+++|+.|++++|..+
T Consensus 180 ~~~l~~~~~L~~L~L~~n~------------------------l~~-~g~~~l~~~~l~~~~~L~~L~Ls~n~l~----- 229 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNG------------------------IRP-EGIEHLLLEGLAYCQELKVLDLQDNTFT----- 229 (386)
T ss_dssp HHHHHHCTTCCEEECCSSC------------------------CCH-HHHHHHHHTTGGGCTTCCEEECCSSCCH-----
T ss_pred HHHHHhCCCcCEEECcCCC------------------------CCH-hHHHHHHHHHhhcCCCccEEECcCCCCC-----
Confidence 235556666666321110 000 0000111224556667777777766541
Q ss_pred chhhHHHHHhhcCCCCCCcccEEEeecCCCCC-----CccCCCCCCCCccEEEEecCCCCC----CCC-CC-CCCCCcCe
Q 044882 320 REAEIEKDVLNMLKPHENLEQFCISGYGGTKF-----PTWFGDSSFSNLVTLEFENCDMCT----ALP-SV-GQLPSLKH 388 (815)
Q Consensus 320 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~l~~L~~ 388 (815)
..........+...++|+.|++++|.+... |.++....+++|++|++++|.+.. .++ .+ .++++|++
T Consensus 230 --~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 230 --HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp --HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred --cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 000123334555666777777777665432 333321135677777777777655 233 33 44677777
Q ss_pred eeeccCC
Q 044882 389 LAVCGMS 395 (815)
Q Consensus 389 L~l~~~~ 395 (815)
|++++|.
T Consensus 308 L~l~~N~ 314 (386)
T 2ca6_A 308 LELNGNR 314 (386)
T ss_dssp EECTTSB
T ss_pred EEccCCc
Confidence 7777663
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=5.9e-14 Score=142.39 Aligned_cols=120 Identities=21% Similarity=0.369 Sum_probs=94.7
Q ss_pred cccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhcc
Q 044882 119 LYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKL 198 (815)
Q Consensus 119 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L 198 (815)
..++++|+.|.+.++. + ...+.+..+++|++|++++|.++.++. +.++++|++|++++|.++.+|. ++.+
T Consensus 42 ~~~l~~L~~L~l~~~~------i--~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD------I--KSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTSC------C--CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred hhhcCcccEEEccCCC------c--ccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 4467778888776653 1 122457788999999999999998876 8999999999999999988765 8999
Q ss_pred CCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccccccccc
Q 044882 199 YNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 199 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
++|++|++++| .+..++ .++.+++|++|++++|. +..+ ..++.+++|+.|
T Consensus 112 ~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 112 KKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp TTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEE
T ss_pred CCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEE
Confidence 99999999999 777775 48899999999999987 5555 345666666655
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=1.9e-14 Score=143.49 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=91.0
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeecc
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNS 231 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 231 (815)
+.++..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++| .+..+|. ++++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 444555555555555554 4555566666666666665555 4555666666666655 4555554 5556666666666
Q ss_pred CCCcccccccccccccccccccceeeccCCCCCccccccccccccceeeecccccCChhhhhhcccCCCcCCceeeeEEc
Q 044882 232 NTKSLEEMPVGIGRLTSLQTLCNFVVGKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKEAQLDGKKNLRELLLRWT 311 (815)
Q Consensus 232 ~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 311 (815)
+|. +..+|.... ++|+.| ++++|
T Consensus 94 ~N~-l~~l~~~~~--~~L~~L------------------------------------------------------~L~~N 116 (263)
T 1xeu_A 94 RNR-LKNLNGIPS--ACLSRL------------------------------------------------------FLDNN 116 (263)
T ss_dssp SSC-CSCCTTCCC--SSCCEE------------------------------------------------------ECCSS
T ss_pred CCc-cCCcCcccc--CcccEE------------------------------------------------------EccCC
Confidence 554 333332111 222222 22222
Q ss_pred cCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCCCCCCCCCCCCCcCeeee
Q 044882 312 LSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMCTALPSVGQLPSLKHLAV 391 (815)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l 391 (815)
..+ .++.+..+++|+.|++++|.+..++ .+. .+++|+.|++++|.+.+. +.+..+++|+.|++
T Consensus 117 ~l~-------------~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 117 ELR-------------DTDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp CCS-------------BSGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred ccC-------------CChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 210 0012233445555555566555555 232 477888888888877655 66777888888888
Q ss_pred ccCC
Q 044882 392 CGMS 395 (815)
Q Consensus 392 ~~~~ 395 (815)
++|.
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 8774
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=4.1e-14 Score=157.58 Aligned_cols=97 Identities=23% Similarity=0.368 Sum_probs=67.2
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|+.|++++|.+..+| .++.+++|++|+|++|.+..+|. ++.+++|++|+|++| .+..+| .++.+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 45667777777777777765 47777777777777777777765 777777777777777 666665 477777777777
Q ss_pred ccCCCcccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|. +..+| .+..+++|+.|
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEE
T ss_pred ecCCC-CCCCc-cccCCCccCEE
Confidence 77776 44442 35555555555
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=5.5e-14 Score=133.69 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=71.6
Q ss_pred cCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceee
Q 044882 150 FKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLK 229 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 229 (815)
..+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .++.+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 45677888888888888777 6788888888888888776664 677888888888888833334677788888888888
Q ss_pred ccCCCcccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTL 252 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L 252 (815)
+++|......|..++.+++|++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEE
Confidence 88887322344444444444444
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.4e-13 Score=130.64 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=36.6
Q ss_pred EEEcCCCCccccCccccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccCCC
Q 044882 157 AFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNTK 234 (815)
Q Consensus 157 ~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 234 (815)
.++++++.++.+|..+. .+|++|++++|.++.+|. .++++++|++|++++| .+..+|.. ++.+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc
Confidence 44444455555544332 355555555555554442 2345555555555555 34444432 3455555555555554
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.2e-13 Score=131.30 Aligned_cols=147 Identities=17% Similarity=0.177 Sum_probs=71.8
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSG 592 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~ 592 (815)
++|++|++++|.. ..++ .+ ..+++|++|++++| .++.++ .
T Consensus 44 ~~L~~L~l~~n~i-~~l~-~l--~~l~~L~~L~l~~n-~~~~~~-----------------------------------~ 83 (197)
T 4ezg_A 44 NSLTYITLANINV-TDLT-GI--EYAHNIKDLTINNI-HATNYN-----------------------------------P 83 (197)
T ss_dssp HTCCEEEEESSCC-SCCT-TG--GGCTTCSEEEEESC-CCSCCG-----------------------------------G
T ss_pred CCccEEeccCCCc-cChH-HH--hcCCCCCEEEccCC-CCCcch-----------------------------------h
Confidence 5677777777653 3444 22 56677777777777 222111 2
Q ss_pred cCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCce
Q 044882 593 LHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQS 672 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 672 (815)
+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|++++|..++.++....+++|++
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~ 163 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCE
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCE
Confidence 33344444555544443333444444445555555555544444444444455555555555533444443344445555
Q ss_pred EEEcCCcchhhhhhhcCcCcccCCCccEEEEec
Q 044882 673 LTIEGNMEIWKSMIERGRGFHRFSSLRQLTIIN 705 (815)
Q Consensus 673 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 705 (815)
|++++|..... ..+..+++|+.|++++
T Consensus 164 L~l~~n~i~~~------~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 164 LNIQFDGVHDY------RGIEDFPKLNQLYAFS 190 (197)
T ss_dssp EECTTBCCCCC------TTGGGCSSCCEEEECB
T ss_pred EECCCCCCcCh------HHhccCCCCCEEEeeC
Confidence 55555432210 1344455555555554
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=2.1e-15 Score=158.87 Aligned_cols=237 Identities=13% Similarity=0.082 Sum_probs=117.0
Q ss_pred cccceEEEeccCCcccCch----hhhcCCCC-CcceEEEeccCCchhhhccccccccceEeccc-ccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPE----AWMCGTNS-SLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHK-CDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~----~~~~~~l~-~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~-~~~L~~l~ls~n~~~ 586 (815)
++|++|++++|. ++..+. ..+ ..++ +|++|++++|. ++......+... +.. +++|+.|++++|.++
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l-~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-----l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAF-ANTPASVTSLNLSGNS-LGFKNSDELVQI-----LAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHH-HTCCTTCCEEECCSSC-GGGSCHHHHHHH-----HHTSCTTCCEEECCSSCGG
T ss_pred CCceEEEccCCC-CChHHHHHHHHHH-HhCCCceeEEECcCCC-CCHHHHHHHHHH-----HhccCCCccEEECcCCcCC
Confidence 346666666665 333322 111 3455 66777776662 222221111100 111 255666666666666
Q ss_pred cCcccccC----CC-CCCceEEeccCCCcccccCC----CCC-CCCcceEEeccccccc----ccccccCCCC-CcCcEE
Q 044882 587 SSSRSGLH----NL-RQLQEISIRRCGNLVSFPEG----GLP-CAKLTRLEISSCKRLE----ALPKGLHNLT-SLQELT 651 (815)
Q Consensus 587 ~~~~~~~~----~l-~~L~~L~l~~~~~l~~~~~~----~~~-l~~L~~L~l~~~~~~~----~~~~~~~~l~-~L~~L~ 651 (815)
+..+..+. .+ ++|++|++++|......+.. +.. .++|++|++++|.+.. .++..+..++ +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 55544332 23 66777777777643322211 122 2467777777776553 2233334444 677777
Q ss_pred ecCCCCCCCCCCC------CCC-CCCceEEEcCCcchhhhhhhcCcCccc-CCCccEEEEeccCCCcccCCCCccccccc
Q 044882 652 IGRGVELPSLKED------GLP-TNLQSLTIEGNMEIWKSMIERGRGFHR-FSSLRQLTIINCDDDMVSFPPKADDKRLG 723 (815)
Q Consensus 652 l~~~~~~~~~~~~------~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 723 (815)
+++| .++..... ... ++|++|++++|..........+..+.. .++|++|++++ +.+...+. +.+.
T Consensus 174 Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~l~~~~~----~~l~ 246 (362)
T 3goz_A 174 LRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL--NCLHGPSL----ENLK 246 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS--SCCCCCCH----HHHH
T ss_pred ecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC--CCCCcHHH----HHHH
Confidence 7777 33322110 122 467777777776433211111123333 24677777776 34444332 2222
Q ss_pred cCCCCCCccceEEecCCC-------CCccccccCCCCCCCCeeeeCCC
Q 044882 724 TALPLPASLTSLWISGFP-------NLERLSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 724 ~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~l~~L~~L~i~~c 764 (815)
..+..+++|+.|++++|. .+..++..+..+++|+.|+++++
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 233455677777777753 12334445666777777777764
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=2.2e-13 Score=149.86 Aligned_cols=58 Identities=10% Similarity=0.018 Sum_probs=38.2
Q ss_pred CCcccEEEeecCCCCCCccCCCCCCCCc-------cEEEEecCCCCCCCCCCCCCCCcCeeeeccCCCce
Q 044882 336 ENLEQFCISGYGGTKFPTWFGDSSFSNL-------VTLEFENCDMCTALPSVGQLPSLKHLAVCGMSRVK 398 (815)
Q Consensus 336 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~~~ 398 (815)
++|+.|++++|.+..+|. +.. +| +.|++++|.+....+.+..+++|+.|++++|+..+
T Consensus 180 ~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 567777777777777776 431 55 88888888766433356667888888888775433
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=7.3e-13 Score=145.67 Aligned_cols=183 Identities=17% Similarity=0.248 Sum_probs=120.4
Q ss_pred CCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCC
Q 044882 539 SSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGL 618 (815)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 618 (815)
.+++.|++++|. ++.++. .+ .++|+.|++++|.+.+ +| ..+++|++|++++|... .+|. +.
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~-----~l-------~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~-~ip~-l~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPD-----NL-------PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLS-TLPE-LP 119 (571)
T ss_dssp TTCSEEECCSSC-CSCCCS-----CC-------CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC-CC
T ss_pred CCccEEEeCCCC-CCccCH-----hH-------cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCC-Ccch-hh
Confidence 378888888874 333332 11 2467777777777773 33 34678888888888644 4666 44
Q ss_pred CCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCc
Q 044882 619 PCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSL 698 (815)
Q Consensus 619 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L 698 (815)
. +|++|++++|.+.+ +|. .+++|+.|++++| .++.+|. .+++|++|++++|.... . +. +. ++|
T Consensus 120 ~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~L~~--l---p~-l~--~~L 182 (571)
T 3cvr_A 120 A--SLKHLDVDNNQLTM-LPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQLTF--L---PE-LP--ESL 182 (571)
T ss_dssp T--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSC--C---CC-CC--TTC
T ss_pred c--CCCEEECCCCcCCC-CCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCCCCC--c---ch-hh--CCC
Confidence 4 88888888888655 555 5788888888888 4555665 56788888888886433 1 12 33 788
Q ss_pred cEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccccCCCCCCCCeeeeCCCC
Q 044882 699 RQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCP 765 (815)
Q Consensus 699 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~ 765 (815)
+.|++++ +.+..+|. ... .....++.|+.|++++ |.++.+|..+..+++|+.|++++|+
T Consensus 183 ~~L~Ls~--N~L~~lp~--~~~---~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 183 EALDVST--NLLESLPA--VPV---RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CEEECCS--SCCSSCCC--CC-----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred CEEECcC--CCCCchhh--HHH---hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 8888887 56666664 000 0011223338888888 5777888877778888888888864
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=3.6e-13 Score=129.46 Aligned_cols=159 Identities=17% Similarity=0.047 Sum_probs=87.1
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
+++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555555555556666777777777665443333344566677777777776555444455666777777777
Q ss_pred CCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCc
Q 044882 654 RGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPAS 731 (815)
Q Consensus 654 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 731 (815)
+| .++.++. .+.+++|++|++++|....... ..+..+++|+.|++++ +.+ ...+++
T Consensus 109 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~l~~L~~L~l~~--N~~---------------~~~~~~ 166 (208)
T 2o6s_A 109 TN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFDRLTSLQYIWLHD--NPW---------------DCTCPG 166 (208)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS--CCB---------------CCCTTT
T ss_pred CC-cCcccCHhHhccCCcCCEEECCCCccceeCH----HHhccCCCccEEEecC--CCe---------------ecCCCC
Confidence 66 3443333 2345566666666664332111 2345566666666665 111 013455
Q ss_pred cceEEecCCCCCccccccCCCCC
Q 044882 732 LTSLWISGFPNLERLSSSIVDLQ 754 (815)
Q Consensus 732 L~~L~l~~c~~l~~l~~~~~~l~ 754 (815)
|+.|+++.+..-..+|..++.++
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHHHHHHHHhCCceeeccCcccc
Confidence 66666666444455665554443
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.44 E-value=1.5e-13 Score=153.01 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=137.0
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcC
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQ 648 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 648 (815)
+..+++|+.|++++|.+.... .+..+++|+.|+|++|.... ++. +..+++|+.|+|++|.+.+ ++ .+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 456778888888888877653 57889999999999997544 333 7788999999999998654 43 688899999
Q ss_pred cEEecCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCC
Q 044882 649 ELTIGRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPL 728 (815)
Q Consensus 649 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 728 (815)
.|++++| .+..++....+++|+.|+|++|..... ..+..+++|+.|++++ +.+..++. +..
T Consensus 113 ~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~--N~l~~~~~----------l~~ 173 (605)
T 1m9s_A 113 SLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLED--NQISDIVP----------LAG 173 (605)
T ss_dssp EEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCCC------GGGGSCTTCSEEECCS--SCCCCCGG----------GTT
T ss_pred EEEecCC-CCCCCccccCCCccCEEECCCCccCCc------hhhcccCCCCEEECcC--CcCCCchh----------hcc
Confidence 9999999 566677677889999999999975432 3577889999999998 45544432 357
Q ss_pred CCccceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccCC
Q 044882 729 PASLTSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFPE 772 (815)
Q Consensus 729 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~~ 772 (815)
+++|+.|+|++ +.++.++ .+..+++|+.|++++| .+...|.
T Consensus 174 l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 174 LTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp CTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred CCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 78999999999 5777776 6888999999999986 4444443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=8.5e-13 Score=127.61 Aligned_cols=82 Identities=20% Similarity=0.344 Sum_probs=50.6
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCcccccc-chhhcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKL-CADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~ 233 (815)
+.++++++.++.+|..+. .+|++|++++|.|+.+| ..+..+++|++|+|++| .+..+ |..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 456666666666665554 46666666666666665 35666666666666666 34433 555666666666666666
Q ss_pred Cccccccc
Q 044882 234 KSLEEMPV 241 (815)
Q Consensus 234 ~~l~~~p~ 241 (815)
. +..+|.
T Consensus 91 ~-l~~l~~ 97 (220)
T 2v9t_B 91 K-ITELPK 97 (220)
T ss_dssp C-CCCCCT
T ss_pred c-CCccCH
Confidence 5 444444
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=8.7e-13 Score=128.55 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=36.3
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 233 (815)
+.++.+++.++.+|..+. .+|++|+|++|.|..+ |..++++++|++|+|++| .+..+|.. +..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC
Confidence 344444445555544332 4455555555555443 344455555555555554 34444422 344555555555554
Q ss_pred C
Q 044882 234 K 234 (815)
Q Consensus 234 ~ 234 (815)
.
T Consensus 99 ~ 99 (229)
T 3e6j_A 99 Q 99 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=6.6e-15 Score=155.01 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=167.9
Q ss_pred EEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEeccccc-ccccccccccccccCcccccCCC
Q 044882 518 IEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCD-NIRTLTVEEGIQSSSSRSGLHNL 596 (815)
Q Consensus 518 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~-~L~~l~ls~n~~~~~~~~~~~~l 596 (815)
+.++.+...+.+|... ...++|++|++++|. ++..+...+... +.+++ +|+.|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~--~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-----l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT--SIPHGVTSLDLSLNN-LYSISTVELIQA-----FANTPASVTSLNLSGNSLGFKNSDELVQI 74 (362)
T ss_dssp EECCCCTTCCHHHHHH--TSCTTCCEEECTTSC-GGGSCHHHHHHH-----HHTCCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred cccccccchHHHHHHH--hCCCCceEEEccCCC-CChHHHHHHHHH-----HHhCCCceeEEECcCCCCCHHHHHHHHHH
Confidence 4566666555555544 566779999999995 444433111111 34566 89999999999988877777664
Q ss_pred -----CCCceEEeccCCCcccccCC----CCCC-CCcceEEecccccccccccc----cCC-CCCcCcEEecCCCCCCCC
Q 044882 597 -----RQLQEISIRRCGNLVSFPEG----GLPC-AKLTRLEISSCKRLEALPKG----LHN-LTSLQELTIGRGVELPSL 661 (815)
Q Consensus 597 -----~~L~~L~l~~~~~l~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~ 661 (815)
++|++|++++|......+.. +..+ ++|++|++++|.+....+.. +.. .++|++|++++| .++..
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~ 153 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIK 153 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGS
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHH
Confidence 99999999999855443332 3334 79999999999976655433 344 369999999999 44421
Q ss_pred C-----CC--CCCCCCceEEEcCCcchhhhhhhcCcCcccC-CCccEEEEeccCCCcccCCCCccccccccCCCC-CCcc
Q 044882 662 K-----ED--GLPTNLQSLTIEGNMEIWKSMIERGRGFHRF-SSLRQLTIINCDDDMVSFPPKADDKRLGTALPL-PASL 732 (815)
Q Consensus 662 ~-----~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L 732 (815)
. .. ...++|++|++++|.............+... ++|+.|++++ +.+..... ..+...+.. +++|
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~----~~l~~~l~~~~~~L 227 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSY----AELAYIFSSIPNHV 227 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCH----HHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHH----HHHHHHHhcCCCCc
Confidence 1 11 1235999999999976543332212345566 5999999999 45554221 111112222 4699
Q ss_pred ceEEecCCCCCcccc-----ccCCCCCCCCeeeeCCCC--C-----CcccCC-CCCCCccceeeecCCc
Q 044882 733 TSLWISGFPNLERLS-----SSIVDLQNLASLYLGDCP--K-----LKYFPE-KGLPSSLLQLDIWGCP 788 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~-----~~~~~l~~L~~L~i~~c~--~-----l~~l~~-~~~~~~L~~L~i~~c~ 788 (815)
+.|++++| .++..+ ..+..+++|++|++++|. . +..++. ....++|+.|++++++
T Consensus 228 ~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 228 VSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred eEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99999994 565543 356788999999999974 1 222222 2235689999999987
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=4.4e-13 Score=121.03 Aligned_cols=124 Identities=18% Similarity=0.155 Sum_probs=104.0
Q ss_pred CCCceEEccccCCcCcCCCcc-ccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCc-cchhhhccC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRT-LPESVNKLY 199 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 199 (815)
.++++.|.+.++. +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+++++
T Consensus 16 ~~~l~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSR------SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCB------CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCc------CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 3567777776653 33 35666678999999999999999988 778999999999999999997 888888899
Q ss_pred CCcEEeccCCccccccc--hhhcCcCCcceeeccCCCccccccc----ccccccccccccc
Q 044882 200 NLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCN 254 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~ 254 (815)
+|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 9999999999 677765 779999999999999998 777775 5888888888853
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1e-12 Score=121.36 Aligned_cols=127 Identities=21% Similarity=0.170 Sum_probs=102.4
Q ss_pred CCCceEEccccCCcCcCCCcc-ccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCc-cchhhhccC
Q 044882 122 IQHLRTFLPVTLSNSSRGHLA-YSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRT-LPESVNKLY 199 (815)
Q Consensus 122 ~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~-lp~~i~~L~ 199 (815)
.++++.|.+.++. +. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+++++
T Consensus 23 ~~~L~~L~l~~n~------l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCK------SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCB------CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCC------CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 3677777776653 32 35566668889999999999998887 778889999999999999987 778788899
Q ss_pred CCcEEeccCCccccccc--hhhcCcCCcceeeccCCCccccccc----ccccccccccccceee
Q 044882 200 NLHSLLLEDCDRLKKLC--ADMGNLAKLHHLKNSNTKSLEEMPV----GIGRLTSLQTLCNFVV 257 (815)
Q Consensus 200 ~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~----~i~~L~~L~~L~~~~~ 257 (815)
+|++|++++| .+..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|+....
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999999998 777776 678899999999999998 777776 5888888888865443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.39 E-value=3.6e-13 Score=134.19 Aligned_cols=170 Identities=20% Similarity=0.216 Sum_probs=110.8
Q ss_pred cccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEe
Q 044882 573 DNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTI 652 (815)
Q Consensus 573 ~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 652 (815)
.++..+.++.|.+.+.. .+..+++|++|++++|. +..++ .+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34455555555555433 45567777888888775 44455 56667788888888877654433 777788888888
Q ss_pred cCCCCCCCCCCCCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCcc
Q 044882 653 GRGVELPSLKEDGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASL 732 (815)
Q Consensus 653 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 732 (815)
++| .++.++.... ++|+.|++++|..... ..+..+++|+.|++++ +.+..++. +..+++|
T Consensus 93 ~~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~------~~l~~l~~L~~L~Ls~--N~i~~~~~----------l~~l~~L 152 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS-ACLSRLFLDNNELRDT------DSLIHLKNLEILSIRN--NKLKSIVM----------LGFLSKL 152 (263)
T ss_dssp CSS-CCSCCTTCCC-SSCCEEECCSSCCSBS------GGGTTCTTCCEEECTT--SCCCBCGG----------GGGCTTC
T ss_pred CCC-ccCCcCcccc-CcccEEEccCCccCCC------hhhcCcccccEEECCC--CcCCCChH----------HccCCCC
Confidence 887 4555555444 7788888887754331 2466778888888877 55555432 2456788
Q ss_pred ceEEecCCCCCccccccCCCCCCCCeeeeCCCCCCcccC
Q 044882 733 TSLWISGFPNLERLSSSIVDLQNLASLYLGDCPKLKYFP 771 (815)
Q Consensus 733 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~i~~c~~l~~l~ 771 (815)
+.|++++ +.++.+ ..+..+++|+.|+++++ .+...|
T Consensus 153 ~~L~L~~-N~i~~~-~~l~~l~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 153 EVLDLHG-NEITNT-GGLTRLKKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp CEEECTT-SCCCBC-TTSTTCCCCCEEEEEEE-EEECCC
T ss_pred CEEECCC-CcCcch-HHhccCCCCCEEeCCCC-cccCCc
Confidence 8888888 556666 46777888888888774 344333
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=3.9e-12 Score=122.97 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=67.4
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++|+.|++++|.+++..+..+.++++|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 34555566666666666555556666666777777766654444445666667777777777666665666666677777
Q ss_pred EEecCCCCCCCC-CC-CCCCCCCceEEEcCCcc
Q 044882 650 LTIGRGVELPSL-KE-DGLPTNLQSLTIEGNME 680 (815)
Q Consensus 650 L~l~~~~~~~~~-~~-~~~~~~L~~L~l~~~~~ 680 (815)
|++++|. ++.+ +. ...+++|+.|++++|+.
T Consensus 134 L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 134 LSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence 7777663 3333 22 24566677777776653
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=1.9e-12 Score=126.10 Aligned_cols=124 Identities=22% Similarity=0.305 Sum_probs=101.3
Q ss_pred CCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccC-ccccCCccCCEEecCCCCCCccch-hhhccCC
Q 044882 123 QHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELP-DSIGDLRYLRYLNLSGTEIRTLPE-SVNKLYN 200 (815)
Q Consensus 123 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~ 200 (815)
++++.|.+.++. +....+..|..+++|++|+|++|.+..+| ..|..+++|++|+|++|.|+.+|. .+..+++
T Consensus 40 ~~L~~L~Ls~n~------i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 40 TNAQILYLHDNQ------ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp TTCSEEECCSSC------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCEEEcCCCc------cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 678888777654 44445666788899999999999998886 456889999999999999998874 4688999
Q ss_pred CcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccc-cccccccccccc
Q 044882 201 LHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVG-IGRLTSLQTLCN 254 (815)
Q Consensus 201 L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~ 254 (815)
|++|+|++| .+..+|..+..+++|++|++++|. +..+|.. +..+++|+.|+.
T Consensus 114 L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 114 LKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred hCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 999999998 788999889999999999999987 7777754 778888887743
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=1.7e-12 Score=120.84 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=106.0
Q ss_pred cccccCCCceEEccccCCcCcCCCccccccccccCCC-cccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhh
Q 044882 117 EDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQ-RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESV 195 (815)
Q Consensus 117 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 195 (815)
..+.++.+++.|.+.++. +. .+ +.+..+. +|++|++++|.++.+ ..++.+++|++|++++|.|+.+|..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~------l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK------IP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTSC------CC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCCC------Cc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 445678889999887754 22 22 4454444 999999999999988 67899999999999999999998555
Q ss_pred -hccCCCcEEeccCCccccccch--hhcCcCCcceeeccCCCcccccccc----ccccccccccccee
Q 044882 196 -NKLYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----IGRLTSLQTLCNFV 256 (815)
Q Consensus 196 -~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~ 256 (815)
+.+++|++|++++| .+..+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+...
T Consensus 84 ~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 84 DQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp HHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred hhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCc
Confidence 99999999999999 7888887 78999999999999998 7778875 88888898886543
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=2.1e-12 Score=135.64 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=67.1
Q ss_pred cccccccccccccCcccccC-CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 575 IRTLTVEEGIQSSSSRSGLH-NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 575 L~~l~ls~n~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
++.|++++|.+++..+..+. ++++|++|+|++|......+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 34444455555444444454 56666666666665444434455556666666666666544444455566666666666
Q ss_pred CCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCC
Q 044882 654 RGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPP 715 (815)
Q Consensus 654 ~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 715 (815)
+|. +..++. ...+++|+.|++++|....... .....+..+++|+.|++++ +.+..++.
T Consensus 121 ~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~--N~l~~l~~ 180 (361)
T 2xot_A 121 NNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSS--NKLKKLPL 180 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCS--SCCCCCCH
T ss_pred CCc-ccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCC--CCCCccCH
Confidence 663 332211 2344455555555554322111 0001114466666666666 55555553
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=4.8e-12 Score=122.35 Aligned_cols=110 Identities=13% Similarity=0.063 Sum_probs=82.2
Q ss_pred ccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCc
Q 044882 570 HKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQE 649 (815)
Q Consensus 570 ~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 649 (815)
.++++|+.|++++|.+.+..+..|.++++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 44566777777777777777778888888888888888754333344677888888888888887777778888888888
Q ss_pred EEecCCCCCCCCCC--CCCCCCCceEEEcCCcc
Q 044882 650 LTIGRGVELPSLKE--DGLPTNLQSLTIEGNME 680 (815)
Q Consensus 650 L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~ 680 (815)
|++++| .++.++. ...+++|+.|++++|+.
T Consensus 133 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 133 LSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 888888 4444443 35677888888888864
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=6.7e-12 Score=121.30 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=41.3
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcE
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 650 (815)
++++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 34444445555555544444444445555555555554433334444444555555555554444444444445555555
Q ss_pred EecCC
Q 044882 651 TIGRG 655 (815)
Q Consensus 651 ~l~~~ 655 (815)
++++|
T Consensus 159 ~L~~N 163 (220)
T 2v70_A 159 NLLAN 163 (220)
T ss_dssp ECCSC
T ss_pred EecCc
Confidence 55554
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=7.5e-12 Score=115.50 Aligned_cols=137 Identities=25% Similarity=0.272 Sum_probs=110.8
Q ss_pred cCCceeEEEeecccccccccccccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccc-cCccccC
Q 044882 96 FSENLRHLSYIPEYCDGVKRFEDLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFE-LPDSIGD 174 (815)
Q Consensus 96 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~ 174 (815)
.+..++.+.+..+......-...+..+++|+.|.+.++. +.. . ..+..+++|++|++++|.+.. +|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 456788888877654311112234678999999888764 222 2 677899999999999999997 7887888
Q ss_pred CccCCEEecCCCCCCccc--hhhhccCCCcEEeccCCccccccch----hhcCcCCcceeeccCCCcccccccc
Q 044882 175 LRYLRYLNLSGTEIRTLP--ESVNKLYNLHSLLLEDCDRLKKLCA----DMGNLAKLHHLKNSNTKSLEEMPVG 242 (815)
Q Consensus 175 l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~l~~~p~~ 242 (815)
+++|++|++++|.++.+| ..++.+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|.+
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 999999999999999887 78999999999999999 7778876 78999999999999998 6777654
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=6.2e-12 Score=132.03 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=111.6
Q ss_pred cCCCCCCccccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccc
Q 044882 505 AGHPGSQNSVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGI 584 (815)
Q Consensus 505 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~ 584 (815)
..+|..++..++.|++++|. +..++...+...+++|+.|++++|. ++.++.. .+.++++|+.|++++|.
T Consensus 31 ~~iP~~~~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~---------~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 31 PNVPQSLPSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSE---------AFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp SSCCSSCCTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTT---------TTTTCTTCCEEECCSSC
T ss_pred CccCccCCCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChh---------hccCCCCCCEEECCCCc
Confidence 45556666778888888886 4445444331278888888888873 2322221 14567788888888888
Q ss_pred cccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccccc---CCCCCcCcEEecCCCCCCCC
Q 044882 585 QSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGL---HNLTSLQELTIGRGVELPSL 661 (815)
Q Consensus 585 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~ 661 (815)
+.+..+..|.++++|++|+|++|......+..+..+++|++|++++|.+....+..+ ..+++|+.|++++| .++.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCcc
Confidence 887777778888888888888887666667778888888888888888655433334 56888888888888 45544
Q ss_pred CCC--CCCCC--CceEEEcCCcc
Q 044882 662 KED--GLPTN--LQSLTIEGNME 680 (815)
Q Consensus 662 ~~~--~~~~~--L~~L~l~~~~~ 680 (815)
+.. ..++. ++.|++++|+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 421 23333 47788888764
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=7.4e-12 Score=143.29 Aligned_cols=108 Identities=27% Similarity=0.367 Sum_probs=96.8
Q ss_pred ccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCC
Q 044882 145 ILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAK 224 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 224 (815)
.+..+..++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|++|++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCC
Confidence 34556899999999999999999999899999999999999999999999999999999999999 78899999999999
Q ss_pred cceeeccCCCcccccccccccccccccccc
Q 044882 225 LHHLKNSNTKSLEEMPVGIGRLTSLQTLCN 254 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 254 (815)
|++|++++|. +..+|.+++.|++|++|+.
T Consensus 295 L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L 323 (727)
T 4b8c_D 295 LKYFYFFDNM-VTTLPWEFGNLCNLQFLGV 323 (727)
T ss_dssp CSEEECCSSC-CCCCCSSTTSCTTCCCEEC
T ss_pred CCEEECCCCC-CCccChhhhcCCCccEEeC
Confidence 9999999998 8899999999999999953
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=5.5e-12 Score=113.79 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=90.5
Q ss_pred cCCCcccEEEcCCCCcc--ccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccc-cchhhcCcCCcc
Q 044882 150 FKLQRLRAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKK-LCADMGNLAKLH 226 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~ 226 (815)
...++|++|++++|.++ .+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|..++.+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 34578999999999998 8899999999999999999999988 78999999999999999 5665 888888899999
Q ss_pred eeeccCCCcccccc--cccccccccccccc
Q 044882 227 HLKNSNTKSLEEMP--VGIGRLTSLQTLCN 254 (815)
Q Consensus 227 ~L~l~~~~~l~~~p--~~i~~L~~L~~L~~ 254 (815)
+|++++|. +..+| ..++.+++|++|+.
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEEC
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeC
Confidence 99999998 77665 67889999998854
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=5.3e-11 Score=112.12 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=56.1
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccCCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~ 234 (815)
++++++++.++.+|..+. .+|++|++++|.|+.+|..+.++++|++|+|++| .+..++ ..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCc
Confidence 567777777777776553 4777777777777777777777777777777777 555554 346777777777777776
Q ss_pred cccccc
Q 044882 235 SLEEMP 240 (815)
Q Consensus 235 ~l~~~p 240 (815)
+..+|
T Consensus 90 -l~~i~ 94 (193)
T 2wfh_A 90 -LRCIP 94 (193)
T ss_dssp -CCBCC
T ss_pred -cCEeC
Confidence 44443
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=5.5e-12 Score=144.39 Aligned_cols=121 Identities=25% Similarity=0.356 Sum_probs=103.8
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.+..++.|+.|.+.++. + ..++..+..+++|++|+|++|.++.+|..|++|++|++|+|++|.|+.+|..|++
T Consensus 219 ~~~~l~~L~~L~Ls~n~------l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ------I-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECTTSC------C-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhccCCCCcEEECCCCC------C-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 35577888888887654 3 2566677899999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEeccCCccccccchhhcCcCCcceeeccCCCcccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNTKSLEEMPVGIGRL 246 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L 246 (815)
|++|++|+|++| .+..+|..|++|++|++|++++|...+.+|..+..+
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 999999999999 788999999999999999999999544556555443
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=3e-11 Score=133.74 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=85.9
Q ss_pred cccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcceeeccCC
Q 044882 154 RLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 233 (815)
.|++|+|++|.++.+|. ++.+++|++|+|++|.|+.+|..++++++|++|+|++| .+..+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 48899999999999887 89999999999999999999999999999999999998 777888 7999999999999999
Q ss_pred Cccccc--ccccccccccccccce
Q 044882 234 KSLEEM--PVGIGRLTSLQTLCNF 255 (815)
Q Consensus 234 ~~l~~~--p~~i~~L~~L~~L~~~ 255 (815)
. +..+ |..++.+++|+.|+..
T Consensus 519 ~-l~~~~~p~~l~~l~~L~~L~L~ 541 (567)
T 1dce_A 519 R-LQQSAAIQPLVSCPRLVLLNLQ 541 (567)
T ss_dssp C-CCSSSTTGGGGGCTTCCEEECT
T ss_pred C-CCCCCCcHHHhcCCCCCEEEec
Confidence 8 6666 7889999999988643
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=3.1e-11 Score=125.04 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=95.4
Q ss_pred ccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccc----ccccccccCCCCCc
Q 044882 572 CDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKR----LEALPKGLHNLTSL 647 (815)
Q Consensus 572 ~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~l~~L 647 (815)
|++|+.+.+.+ .+..+....|.++++|+.+++.+|.....-+.+|..+.++..+....... ...-...+.++.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777766 56666666677777777777777665444444555555555554433211 00001112233333
Q ss_pred C-cEEecCCCCCCCCC--CC------------------------CCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccE
Q 044882 648 Q-ELTIGRGVELPSLK--ED------------------------GLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQ 700 (815)
Q Consensus 648 ~-~L~l~~~~~~~~~~--~~------------------------~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 700 (815)
+ .+.+.....+.... .. ..+++|+.+++++|...... . ..|.++++|++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~--~--~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP--D--FTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC--T--TTTTTCTTCCE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec--H--hhhhCCCCCCE
Confidence 3 22222111100000 00 01456666666665422211 1 45666666666
Q ss_pred EEEeccCCCcccCCCCccccccccCCCCCCccc-eEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCCC--C
Q 044882 701 LTIINCDDDMVSFPPKADDKRLGTALPLPASLT-SLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKGL--P 776 (815)
Q Consensus 701 L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~-~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~ 776 (815)
+++.+ + +..++. .+|..+++|+ .+++.+ .++.|+. .|.+|++|+.|++.+ ++++.++...+ .
T Consensus 255 l~l~~--n-i~~I~~--------~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 255 IKLPH--N-LKTIGQ--------RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNG 320 (329)
T ss_dssp EECCT--T-CCEECT--------TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTT
T ss_pred EECCc--c-cceehH--------HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCC
Confidence 66665 2 555555 3455566666 666665 4555554 566666666666654 45666655332 2
Q ss_pred Ccccee
Q 044882 777 SSLLQL 782 (815)
Q Consensus 777 ~~L~~L 782 (815)
++|+.+
T Consensus 321 ~~L~~l 326 (329)
T 3sb4_A 321 VPSKLI 326 (329)
T ss_dssp CCCCEE
T ss_pred cchhhh
Confidence 344444
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=5.5e-11 Score=112.02 Aligned_cols=99 Identities=23% Similarity=0.401 Sum_probs=79.0
Q ss_pred CcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeec
Q 044882 153 QRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKN 230 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l 230 (815)
+.|++|++++|.++.+|..|..+++|++|+|++|.|+.++ ..+.++++|++|+|++| .+..+| ..++.+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 4688888888888888888888888888888888888776 56888888888888888 566655 45788888888888
Q ss_pred cCCCcccccccc-ccccccccccc
Q 044882 231 SNTKSLEEMPVG-IGRLTSLQTLC 253 (815)
Q Consensus 231 ~~~~~l~~~p~~-i~~L~~L~~L~ 253 (815)
++|. +..+|.+ +..+++|+.|+
T Consensus 110 ~~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 110 HGND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCC-CCeeChhhhhcCccccEEE
Confidence 8887 6777765 77777777774
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=2.2e-11 Score=113.24 Aligned_cols=104 Identities=28% Similarity=0.423 Sum_probs=89.9
Q ss_pred ccccCCCcccEEEcCCCCccccCccccCCc-cCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhh-cCcCC
Q 044882 147 PKLFKLQRLRAFSLRGYHIFELPDSIGDLR-YLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADM-GNLAK 224 (815)
Q Consensus 147 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~ 224 (815)
+.+..+.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++| .+..+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 345678899999999999998865 55555 999999999999988 68899999999999999 788888665 89999
Q ss_pred cceeeccCCCccccccc--ccccccccccccc
Q 044882 225 LHHLKNSNTKSLEEMPV--GIGRLTSLQTLCN 254 (815)
Q Consensus 225 L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~ 254 (815)
|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 90 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 90 LTELILTNNS-LVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCEEECCSCC-CCCGGGGGGGGGCTTCCEEEC
T ss_pred CCEEECCCCc-CCcchhhHhhhcCCCCCEEEe
Confidence 9999999998 788887 6888888888843
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.15 E-value=1e-10 Score=110.22 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=68.7
Q ss_pred cccEEEcCCCCccccCc--cccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccch-hhcCcCCcceee
Q 044882 154 RLRAFSLRGYHIFELPD--SIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCA-DMGNLAKLHHLK 229 (815)
Q Consensus 154 ~Lr~L~L~~~~i~~lp~--~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~ 229 (815)
+|++|++++|.++.++. .++.+++|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|. .++++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEE
Confidence 67777777777777754 267777777777777777765 567777777777777777 4555443 367777777777
Q ss_pred ccCCCccccccccccccccccccc
Q 044882 230 NSNTKSLEEMPVGIGRLTSLQTLC 253 (815)
Q Consensus 230 l~~~~~l~~~p~~i~~L~~L~~L~ 253 (815)
+++|......|..++.+++|+.|+
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEE
Confidence 777773333455577777777664
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=1.3e-10 Score=109.53 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=44.3
Q ss_pred cccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcE
Q 044882 571 KCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQEL 650 (815)
Q Consensus 571 ~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 650 (815)
++++|+.|++++|.+++..|..+.++++|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 34445555555555555555555555555555555555444444444455555555555555555445555555555555
Q ss_pred EecCC
Q 044882 651 TIGRG 655 (815)
Q Consensus 651 ~l~~~ 655 (815)
++++|
T Consensus 132 ~L~~N 136 (192)
T 1w8a_A 132 NLASN 136 (192)
T ss_dssp ECTTC
T ss_pred EeCCC
Confidence 55555
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.12 E-value=1.1e-10 Score=129.20 Aligned_cols=126 Identities=24% Similarity=0.237 Sum_probs=90.9
Q ss_pred ccccccCCCcccEEE-cCCCCccccCc------cccC--CccCCEEecCCCCCCccchhhhccCCCcEEeccCCcccccc
Q 044882 145 ILPKLFKLQRLRAFS-LRGYHIFELPD------SIGD--LRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKL 215 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~-L~~~~i~~lp~------~~~~--l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 215 (815)
.+..+..+++|+.|+ ++.+.+..++. .+.. ...|++|+|++|.++.+|. ++.+++|++|+|++| .+..+
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~l 478 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRAL 478 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCC
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcc-ccccc
Confidence 344557788888888 56554443321 1111 1358999999999999987 999999999999999 78899
Q ss_pred chhhcCcCCcceeeccCCCcccccccccccccccccccceeeccCC---CCCcccccccccc
Q 044882 216 CADMGNLAKLHHLKNSNTKSLEEMPVGIGRLTSLQTLCNFVVGKGS---GSGLRELKLLTHL 274 (815)
Q Consensus 216 p~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~---~~~~~~l~~L~~L 274 (815)
|..++++++|++|++++|. +..+| .++.+++|+.|+........ ...+..+++|+.|
T Consensus 479 p~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 479 PPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp CGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred chhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 9999999999999999998 77788 89999999998654433221 2334444444444
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=1.2e-10 Score=107.52 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=79.8
Q ss_pred cccccccCCCcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccchh-hhccCCCcEEeccCCccccccchh-hc
Q 044882 144 SILPKLFKLQRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MG 220 (815)
Q Consensus 144 ~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~ 220 (815)
.+|..+. ++|++|+|++|.++.+ |..|+++++|++|+|++|+|+.+|.. ++++++|++|+|++| .+..+|.. ++
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~ 102 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFD 102 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhc
Confidence 3444443 7889999999999987 67789999999999999999988865 588999999999998 77788765 88
Q ss_pred CcCCcceeeccCCCccccccccccccc
Q 044882 221 NLAKLHHLKNSNTKSLEEMPVGIGRLT 247 (815)
Q Consensus 221 ~L~~L~~L~l~~~~~l~~~p~~i~~L~ 247 (815)
.+++|++|++++|. +...+..+..+.
T Consensus 103 ~l~~L~~L~L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 103 NLKSLTHIYLYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp TCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred cccCCCEEEeCCCC-cccccccHHHHH
Confidence 89999999999987 665555444433
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=7.8e-13 Score=125.80 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred cccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhccCCCcEEeccCCccccccchhhcCcCCcce
Q 044882 148 KLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNKLYNLHSLLLEDCDRLKKLCADMGNLAKLHH 227 (815)
Q Consensus 148 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 227 (815)
.+..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|..++.+++|++|++++| .+..+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 5667777888888888777777 777778888888888877777777777778888888877 666666 4777778888
Q ss_pred eeccCCCccccccc--cccccccccccc
Q 044882 228 LKNSNTKSLEEMPV--GIGRLTSLQTLC 253 (815)
Q Consensus 228 L~l~~~~~l~~~p~--~i~~L~~L~~L~ 253 (815)
|++++|. +..+|. .+..+++|++|+
T Consensus 120 L~l~~N~-i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 120 LYMSNNK-ITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp EEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred EECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence 8887776 555543 466666666663
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=4.5e-12 Score=120.47 Aligned_cols=126 Identities=21% Similarity=0.250 Sum_probs=105.2
Q ss_pred ccccCCCceEEccccCCcCcCCCccccccccccCCCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccchhhhc
Q 044882 118 DLYDIQHLRTFLPVTLSNSSRGHLAYSILPKLFKLQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLPESVNK 197 (815)
Q Consensus 118 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~ 197 (815)
.+..+++|+.|.+.++. +.. ++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+++
T Consensus 43 ~~~~l~~L~~L~ls~n~------l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN------IEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEE------ESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCCC------Ccc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 56788999999887654 222 34 778899999999999999999998888999999999999999987 6999
Q ss_pred cCCCcEEeccCCccccccch--hhcCcCCcceeeccCCCcccccccc----------ccccccccccc
Q 044882 198 LYNLHSLLLEDCDRLKKLCA--DMGNLAKLHHLKNSNTKSLEEMPVG----------IGRLTSLQTLC 253 (815)
Q Consensus 198 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~----------i~~L~~L~~L~ 253 (815)
+++|++|++++| .+..+|. .++.+++|++|++++|......|.. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999999 7777664 7899999999999999833333332 67788888885
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=3.2e-10 Score=104.65 Aligned_cols=96 Identities=22% Similarity=0.387 Sum_probs=86.2
Q ss_pred cEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccCC
Q 044882 156 RAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSNT 233 (815)
Q Consensus 156 r~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 233 (815)
++++++++.++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|.. ++++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 789999999999998775 8999999999999988 578999999999999999 88888876 589999999999999
Q ss_pred Ccccccccc-cccccccccccce
Q 044882 234 KSLEEMPVG-IGRLTSLQTLCNF 255 (815)
Q Consensus 234 ~~l~~~p~~-i~~L~~L~~L~~~ 255 (815)
. +..+|.+ ++.+++|+.|+..
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECC
T ss_pred c-cceeCHHHhccccCCCEEEeC
Confidence 8 8888876 8899999998543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.05 E-value=8.6e-10 Score=102.55 Aligned_cols=106 Identities=22% Similarity=0.132 Sum_probs=69.8
Q ss_pred ccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEec
Q 044882 574 NIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIG 653 (815)
Q Consensus 574 ~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 653 (815)
+++.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 45555555555555555566777778888888776543333445677788888888877666555556777788888888
Q ss_pred CCCCCCCCCCC--CCCCCCceEEEcCCcc
Q 044882 654 RGVELPSLKED--GLPTNLQSLTIEGNME 680 (815)
Q Consensus 654 ~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 680 (815)
+| .++.++.. ..+++|++|++++|+.
T Consensus 109 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 109 TN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 77 44445442 4567777777777754
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.04 E-value=4.3e-10 Score=103.45 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=55.7
Q ss_pred CcccEEEcCCCCcccc-CccccCCccCCEEecCCCCCCccchh-hhccCCCcEEeccCCccccccchh-hcCcCCcceee
Q 044882 153 QRLRAFSLRGYHIFEL-PDSIGDLRYLRYLNLSGTEIRTLPES-VNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLK 229 (815)
Q Consensus 153 ~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~ 229 (815)
++|++|+|++|.|+.+ |..|.++++|++|+|++|+|+.+|.. +.++++|++|+|++| .+..+|.. +..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEE
Confidence 5677777777777766 45567777777777777777766643 467777777777777 56666553 66777777777
Q ss_pred ccCCC
Q 044882 230 NSNTK 234 (815)
Q Consensus 230 l~~~~ 234 (815)
+++|.
T Consensus 109 L~~N~ 113 (170)
T 3g39_A 109 LLNNP 113 (170)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 77776
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=2.6e-09 Score=110.41 Aligned_cols=225 Identities=11% Similarity=0.091 Sum_probs=110.2
Q ss_pred CCcccEEEcCCCCccccCccccCCccCCEEecCCCCCCccc-hhhhc--------cCCCcEEeccCCccccccc-hhhcC
Q 044882 152 LQRLRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNK--------LYNLHSLLLEDCDRLKKLC-ADMGN 221 (815)
Q Consensus 152 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~--------L~~L~~L~L~~~~~l~~lp-~~i~~ 221 (815)
+++|++|||++|++..+...-+.+..++++.+..+. +| ..+.+ +++|+.|++.+ .+..++ ..|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccc---cCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 778888999888887221111223335555555553 33 44556 78888888876 455555 34777
Q ss_pred cCCcceeeccCCCcccccccc-cccccccccccceee------ccCCCCCccccccccccccceeeecccccCChhhhhh
Q 044882 222 LAKLHHLKNSNTKSLEEMPVG-IGRLTSLQTLCNFVV------GKGSGSGLRELKLLTHLHGTLNISKLENVKDVGDAKE 294 (815)
Q Consensus 222 L~~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~------~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~ 294 (815)
+++|+.|++.++. +..++.. +..+.++..+..... .......+.++..|+ ..+. +...........
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~---~~i~---~~~~~~l~~~~~ 195 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE---TTIQ---VGAMGKLEDEIM 195 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE---EEEE---ECTTCCHHHHHH
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc---eeEE---ecCCCcHHHHHh
Confidence 8888888887776 4455544 555555555421110 000111122222111 0011 111111222222
Q ss_pred cccCCCcCCceeeeEEccCCCCCCCchhhHHHHHhhcCCCCCCcccEEEeecCCCCCCccCCCCCCCCccEEEEecCCCC
Q 044882 295 AQLDGKKNLRELLLRWTLSTDGSSSREAEIEKDVLNMLKPHENLEQFCISGYGGTKFPTWFGDSSFSNLVTLEFENCDMC 374 (815)
Q Consensus 295 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 374 (815)
..-....++..+.+.+.-. ......+. ..+++|+.+++.++.+..+|...+. .+++|+.+++.++ .
T Consensus 196 ~~~~~~~~~~~l~~~~~l~---------~~~~~~l~--~~~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n--i 261 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLD---------NADFKLIR--DYMPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN--L 261 (329)
T ss_dssp HTTCCGGGCSEEEEEECCC---------HHHHHHHH--HHCTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT--C
T ss_pred hcccCccccceEEEeeeec---------HHHHHHHH--HhcCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc--c
Confidence 2222344555555554321 00011110 1145677777776666666665543 4566666666665 2
Q ss_pred CCCC--CCCCCCCcC-eeeeccCCCceecCccc
Q 044882 375 TALP--SVGQLPSLK-HLAVCGMSRVKRLGSEF 404 (815)
Q Consensus 375 ~~l~--~l~~l~~L~-~L~l~~~~~~~~~~~~~ 404 (815)
..++ .|.++++|+ .+.+.+ .++.++...
T Consensus 262 ~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 262 KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CEECTTTTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred ceehHHHhhCChhccEEEEEcc--cceEEchhh
Confidence 2233 566666666 666654 344444333
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=8.4e-10 Score=102.62 Aligned_cols=84 Identities=29% Similarity=0.396 Sum_probs=44.1
Q ss_pred cCCCcccEEEcCCCCccccCc-cccCCccCCEEecCCCCCCccch-hhhccCCCcEEeccCCccccccchh-hcCcCCcc
Q 044882 150 FKLQRLRAFSLRGYHIFELPD-SIGDLRYLRYLNLSGTEIRTLPE-SVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLH 226 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~ 226 (815)
..+++|++|++++|.++.+|. .++.+++|++|++++|.++.+|. .++++++|++|++++| .+..+|.. +..+++|+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~ 127 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQ 127 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccC
Confidence 455555555555555555542 24555555555555555555543 2455555555555555 44444443 24455555
Q ss_pred eeeccCCC
Q 044882 227 HLKNSNTK 234 (815)
Q Consensus 227 ~L~l~~~~ 234 (815)
+|++++|.
T Consensus 128 ~L~l~~N~ 135 (177)
T 2o6r_A 128 KIWLHTNP 135 (177)
T ss_dssp EEECCSSC
T ss_pred EEEecCCC
Confidence 55555554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.01 E-value=5.4e-10 Score=102.80 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=85.4
Q ss_pred ccEEEcCCCCccccCccccCCccCCEEecCCCCCCcc-chhhhccCCCcEEeccCCccccccchh-hcCcCCcceeeccC
Q 044882 155 LRAFSLRGYHIFELPDSIGDLRYLRYLNLSGTEIRTL-PESVNKLYNLHSLLLEDCDRLKKLCAD-MGNLAKLHHLKNSN 232 (815)
Q Consensus 155 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~ 232 (815)
.++++++++.++.+|..+. .+|++|+|++|.|+.+ |..++++++|++|+|++| .+..+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 5789999999999998774 8999999999999988 577999999999999999 77788765 58999999999999
Q ss_pred CCcccccccc-ccccccccccccee
Q 044882 233 TKSLEEMPVG-IGRLTSLQTLCNFV 256 (815)
Q Consensus 233 ~~~l~~~p~~-i~~L~~L~~L~~~~ 256 (815)
|. +..+|.+ +..+++|+.|+...
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCC
Confidence 98 7788776 88999999986543
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=1.8e-08 Score=106.40 Aligned_cols=252 Identities=14% Similarity=0.193 Sum_probs=168.5
Q ss_pred ccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCccccc
Q 044882 514 VLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGL 593 (815)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~ 593 (815)
+|+.+.+.++ +..++...+ .+ .+|+.+.+.. .++.++.. .+.+|.+|+.+.++.|.+..+....|
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF-~~-~~L~~i~lp~--~l~~I~~~---------aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAF-FN-STVQEIVFPS--TLEQLKED---------IFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp CCSEEECCTT--CCEECTTTT-TT-CCCCEEECCT--TCCEECSS---------TTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred CccEEEeCCC--ccEECHHhc-CC-CCceEEEeCC--CccEehHH---------HhhCcccCCeeecCCCcceEechhhE
Confidence 4666666544 555554443 23 3577777764 33333322 35678888888888888777666666
Q ss_pred CCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccc-cccCCCCCcCcEEecCCCCCCCCCCC--CCCCC
Q 044882 594 HNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALP-KGLHNLTSLQELTIGRGVELPSLKED--GLPTN 669 (815)
Q Consensus 594 ~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~ 669 (815)
. ..+|+.+.+.++ ++.++ .+|..+++|+.+++.++ +..++ ..|.+ .+|+.+.+.++ ++.++.. ..+++
T Consensus 201 ~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 201 V-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYYCPE 272 (401)
T ss_dssp T-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTTCTT
T ss_pred e-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhCCCC
Confidence 6 588999998754 44444 46778889999999875 33343 34555 78999999653 5555443 46789
Q ss_pred CceEEEcCCcchhhhh-hhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 670 LQSLTIEGNMEIWKSM-IERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 670 L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
|+.+++.++....... ......|.++++|+.+.+.+ ++..++. .+|..+++|+.+++.. +++.|..
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I~~--------~aF~~c~~L~~l~lp~--~l~~I~~ 339 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRILGQ--------GLLGGNRKVTQLTIPA--NVTQINF 339 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEECT--------TTTTTCCSCCEEEECT--TCCEECT
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEEhh--------hhhcCCCCccEEEECc--cccEEcH
Confidence 9999998775320000 01126789999999999975 4777776 5667889999999965 4888866
Q ss_pred -cCCCCCCCCeeeeCCCCCCcccCCC---CCCCccceeeecCCcchHHHHhccCCCccccccc
Q 044882 749 -SIVDLQNLASLYLGDCPKLKYFPEK---GLPSSLLQLDIWGCPLIEEKCRKDGGQYWDLLTH 807 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~L~~L~i~~c~~l~~~~~~~~~~~w~~~~~ 807 (815)
.|.++ +|+.+++.++ .+..++.. +++.+++.|.|-.. -.+.++.+ ..|.....
T Consensus 340 ~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~--~~~~y~~a--~~W~~f~~ 396 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE--SVEKYKNA--NGWRDFTN 396 (401)
T ss_dssp TSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG--GHHHHHHS--TTGGGGGG
T ss_pred HhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH--HHHHhhhc--cchhhhhh
Confidence 78888 9999999984 66666653 34568888988763 24445443 45877543
No 142
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.97 E-value=1.5e-10 Score=128.19 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=61.4
Q ss_pred eEeecCCCCccChhhHHHHHHHc--CCccCCCCCCChHHHHHHHHHHHHhCCCceeeCC-CcccccchhHHHHHHHHHhc
Q 044882 2 YCSLFPKDYEFEEEEIILLWCAV--GLLDHGESGNPSEDLGRKFFRELRARSFIQQSSN-SISRFLMHDLINDLAQWAAG 78 (815)
Q Consensus 2 ycslfPed~~i~~~~Li~~Wiae--G~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~~~~ 78 (815)
|||+||+||.|+ |+.|+|+ ||+.....+..++++|+ |+++|+++||++.... ...+|+|||+|||+|+++++
T Consensus 395 ~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 395 FAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp GGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred heeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 999999999999 8999999 99987544677888888 9999999999998753 35689999999999999988
Q ss_pred cceE
Q 044882 79 EIYF 82 (815)
Q Consensus 79 ~~~~ 82 (815)
+++.
T Consensus 470 ~~~~ 473 (549)
T 2a5y_B 470 AQTI 473 (549)
T ss_dssp THHH
T ss_pred HHHH
Confidence 7654
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.84 E-value=8.7e-08 Score=101.06 Aligned_cols=233 Identities=10% Similarity=0.198 Sum_probs=161.0
Q ss_pred cceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhccccccccceEecccccccccccccccccccCcccccC
Q 044882 515 LKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPLSLKNLLIHKCDNIRTLTVEEGIQSSSSRSGLH 594 (815)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~~L~~l~l~~~~~L~~l~ls~n~~~~~~~~~~~ 594 (815)
++.+.+.+ .++.++...+ .+ .+|+.+.+... ++.++..+| .+| +|+.+.+.. .+..+....|.
T Consensus 115 l~~i~ip~--~i~~I~~~aF-~~-~~L~~i~l~~~--i~~I~~~aF---------~~~-~L~~i~lp~-~l~~I~~~aF~ 177 (401)
T 4fdw_A 115 YNEIILPN--SVKSIPKDAF-RN-SQIAKVVLNEG--LKSIGDMAF---------FNS-TVQEIVFPS-TLEQLKEDIFY 177 (401)
T ss_dssp CSEEECCT--TCCEECTTTT-TT-CCCSEEECCTT--CCEECTTTT---------TTC-CCCEEECCT-TCCEECSSTTT
T ss_pred ccEEEECC--ccCEehHhhc-cc-CCccEEEeCCC--ccEECHHhc---------CCC-CceEEEeCC-CccEehHHHhh
Confidence 44444433 2444544443 34 36888887654 555554433 333 355555543 44555567899
Q ss_pred CCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCCC-CCCCCceE
Q 044882 595 NLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKEDG-LPTNLQSL 673 (815)
Q Consensus 595 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L 673 (815)
++++|+.+++.+|. +..++.....+.+|+.+.+.++ +...-...|.++++|+.+++.++ ++.++... .-.+|+.+
T Consensus 178 ~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 178 YCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTV 253 (401)
T ss_dssp TCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEE
T ss_pred CcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEE
Confidence 99999999999885 5666665555799999999865 34444557889999999999875 45554432 12689999
Q ss_pred EEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcc-----cCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 674 TIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMV-----SFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 674 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
.+.++- . .. ....|.++++|+.+++.+ +... .++. .+|..+++|+.+++.+ .++.|+.
T Consensus 254 ~lp~~i--~-~I--~~~aF~~c~~L~~l~l~~--~~~~~~~~~~I~~--------~aF~~c~~L~~l~l~~--~i~~I~~ 316 (401)
T 4fdw_A 254 KLPNGV--T-NI--ASRAFYYCPELAEVTTYG--STFNDDPEAMIHP--------YCLEGCPKLARFEIPE--SIRILGQ 316 (401)
T ss_dssp EEETTC--C-EE--CTTTTTTCTTCCEEEEES--SCCCCCTTCEECT--------TTTTTCTTCCEECCCT--TCCEECT
T ss_pred EeCCCc--c-EE--ChhHhhCCCCCCEEEeCC--ccccCCcccEECH--------HHhhCCccCCeEEeCC--ceEEEhh
Confidence 996542 1 11 126799999999999987 3332 4554 5677889999999985 5888877
Q ss_pred -cCCCCCCCCeeeeCCCCCCcccCCCCCC-CccceeeecCC
Q 044882 749 -SIVDLQNLASLYLGDCPKLKYFPEKGLP-SSLLQLDIWGC 787 (815)
Q Consensus 749 -~~~~l~~L~~L~i~~c~~l~~l~~~~~~-~~L~~L~i~~c 787 (815)
.|.+|++|+.+.|.. +++.++...+. .+|+.+++.++
T Consensus 317 ~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp TTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCS
T ss_pred hhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCC
Confidence 788999999999964 58888764331 38999999886
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=9.2e-07 Score=93.77 Aligned_cols=190 Identities=12% Similarity=0.105 Sum_probs=107.3
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEecccccccccccccCCCCCcC
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQ 648 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 648 (815)
+.+|.+|+.+.+..| +..+....+.++..|+.+.+..+. ..+........+|+.+.+.... ...-...+..+.+|+
T Consensus 181 F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLE 256 (394)
T ss_dssp TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCC
T ss_pred ccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCceEEECCCc-eecccccccccccce
Confidence 445666666655443 333334456666666666665442 3333344445667777665432 222233456667777
Q ss_pred cEEecCCCCCCCCCC--CCCCCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCC
Q 044882 649 ELTIGRGVELPSLKE--DGLPTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTAL 726 (815)
Q Consensus 649 ~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~ 726 (815)
.+.+..+. ..+.. ...+..++.+.......- . ..+.++.+|+.+.+.+ ++..+.. .+|
T Consensus 257 ~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~~i~-----~--~~F~~~~~L~~i~l~~---~i~~I~~--------~aF 316 (394)
T 4fs7_A 257 SISIQNNK--LRIGGSLFYNCSGLKKVIYGSVIVP-----E--KTFYGCSSLTEVKLLD---SVKFIGE--------EAF 316 (394)
T ss_dssp EEEECCTT--CEECSCTTTTCTTCCEEEECSSEEC-----T--TTTTTCTTCCEEEECT---TCCEECT--------TTT
T ss_pred eEEcCCCc--ceeeccccccccccceeccCceeec-----c--cccccccccccccccc---ccceech--------hhh
Confidence 77776542 12221 234556666666544211 1 4566777777777754 3555555 345
Q ss_pred CCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcccCCCCC--CCccceeeecC
Q 044882 727 PLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKYFPEKGL--PSSLLQLDIWG 786 (815)
Q Consensus 727 ~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~l~~~~~--~~~L~~L~i~~ 786 (815)
..+++|+.+++.. .++.|.. .|.+|++|+.+++.. +++.++...+ .++|+.+++..
T Consensus 317 ~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 317 ESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred cCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 6667777777754 4666655 667777888877754 3666665443 35677777643
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.70 E-value=1.3e-06 Score=92.54 Aligned_cols=64 Identities=9% Similarity=0.174 Sum_probs=36.2
Q ss_pred ccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeecc
Q 044882 165 IFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNS 231 (815)
Q Consensus 165 i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 231 (815)
++.+. .+|.++.+|+.+.+.. .++.++ .++.++.+|+.+++..+ +..++ ..+.++++|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhccc
Confidence 44453 4566667777777753 366554 45666677777766543 33343 235555666655443
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=2.4e-08 Score=104.25 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=58.3
Q ss_pred ccccccCCCcccEEEcCC-CCccccC-ccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCCccccccchhhcC
Q 044882 145 ILPKLFKLQRLRAFSLRG-YHIFELP-DSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLCADMGN 221 (815)
Q Consensus 145 ~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 221 (815)
+|. +..+++|++|+|++ |.++.+| ..|+.|.+|++|+|++|.|+.+| ..|++|++|++|+|++| .+..+|..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 101 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQ 101 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcc
Confidence 555 66667777777775 7777665 45677777777777777777654 45677777777777777 56666655433
Q ss_pred cCCcceeeccCCC
Q 044882 222 LAKLHHLKNSNTK 234 (815)
Q Consensus 222 L~~L~~L~l~~~~ 234 (815)
...|+.|++.+|.
T Consensus 102 ~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLSGNP 114 (347)
T ss_dssp SCCCCEEECCSSC
T ss_pred cCCceEEEeeCCC
Confidence 3337777777665
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=3.5e-08 Score=102.93 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=80.9
Q ss_pred EEEcCCC-CccccCccccCCccCCEEecCC-CCCCccc-hhhhccCCCcEEeccCCccccccc-hhhcCcCCcceeeccC
Q 044882 157 AFSLRGY-HIFELPDSIGDLRYLRYLNLSG-TEIRTLP-ESVNKLYNLHSLLLEDCDRLKKLC-ADMGNLAKLHHLKNSN 232 (815)
Q Consensus 157 ~L~L~~~-~i~~lp~~~~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 232 (815)
.++++++ +++.+|. +..+.+|++|+|++ |.|..+| ..|++|++|++|+|++| .+..+| ..|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 8999999 99999999999996 9999887 67999999999999999 666665 4679999999999999
Q ss_pred CCcccccccccccccccccccce
Q 044882 233 TKSLEEMPVGIGRLTSLQTLCNF 255 (815)
Q Consensus 233 ~~~l~~~p~~i~~L~~L~~L~~~ 255 (815)
|. +..+|..+.....|+.|+..
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~ 111 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLS 111 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECC
T ss_pred Cc-cceeCHHHcccCCceEEEee
Confidence 98 88888774443348877543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=6.9e-09 Score=108.41 Aligned_cols=36 Identities=17% Similarity=-0.012 Sum_probs=19.9
Q ss_pred CCCccceEEecCCCCCcc-----ccccCCCCCCCCeeeeCCC
Q 044882 728 LPASLTSLWISGFPNLER-----LSSSIVDLQNLASLYLGDC 764 (815)
Q Consensus 728 ~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~i~~c 764 (815)
.+++|+.|+|++| .++. +...+...++|++|++++|
T Consensus 209 ~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 209 RNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp GCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred cCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3456666666663 3332 2233445566777777764
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=6.2e-09 Score=108.76 Aligned_cols=68 Identities=15% Similarity=0.004 Sum_probs=32.0
Q ss_pred CCCCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCC
Q 044882 667 PTNLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGF 740 (815)
Q Consensus 667 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c 740 (815)
.++|++|++++|.............+...++|++|++++ +.+..... ..+...+...++|++|+|++|
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~--N~i~~~g~----~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY--NGAGDTAA----LALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS--SCCCHHHH----HHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC--CCCCHHHH----HHHHHHHHhCCCCCEEeccCC
Confidence 345666666665533322111113445556677777766 23322111 111112223467778888774
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=4.1e-06 Score=86.50 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=28.5
Q ss_pred cCCCCCCceEEeccCCCc---------ccccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCC
Q 044882 593 LHNLRQLQEISIRRCGNL---------VSFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRG 655 (815)
Q Consensus 593 ~~~l~~L~~L~l~~~~~l---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 655 (815)
...+++|+.|.+...... ..+...+..+|+|++|.|++|... .++. + .+++|+.|++..|
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISG 203 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECS
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecC
Confidence 345677777777543210 011111233456666666665221 1222 2 2556666666555
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.08 E-value=0.00024 Score=75.02 Aligned_cols=104 Identities=17% Similarity=0.308 Sum_probs=43.2
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCcccccC-CCCCCCCcceEEecccccccccccccCCCCCc
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFPE-GGLPCAKLTRLEISSCKRLEALPKGLHNLTSL 647 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 647 (815)
+.+|..|+.+.+..+ ...+....|.++++|+.+.+... +..++. +|..|.+|+.+.|..+ +...-...|.++.+|
T Consensus 261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccc-cceecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 344555554444222 11222334445555555555321 222322 4444555555555432 111122344555555
Q ss_pred CcEEecCCCCCCCCCCC--CCCCCCceEEEcCC
Q 044882 648 QELTIGRGVELPSLKED--GLPTNLQSLTIEGN 678 (815)
Q Consensus 648 ~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~ 678 (815)
+.+.+..+ ++.+... ..+.+|+.+++.++
T Consensus 337 ~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 55555432 3333221 23444555555444
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=2.2e-06 Score=77.03 Aligned_cols=82 Identities=10% Similarity=0.093 Sum_probs=43.8
Q ss_pred CCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCC--CCC----CCCCceEEEcCCcchhhhhhhcCcCccc
Q 044882 621 AKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKE--DGL----PTNLQSLTIEGNMEIWKSMIERGRGFHR 694 (815)
Q Consensus 621 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 694 (815)
..|++|++++|.+...--..+.++++|++|+|++|..+++-.- ... .++|++|++++|..+++.... .+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~---~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII---ALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH---HGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH---HHhc
Confidence 4677777777775544334456777777777777766654210 011 234666666666544432221 2334
Q ss_pred CCCccEEEEec
Q 044882 695 FSSLRQLTIIN 705 (815)
Q Consensus 695 l~~L~~L~l~~ 705 (815)
+++|++|++++
T Consensus 138 ~~~L~~L~L~~ 148 (176)
T 3e4g_A 138 FRNLKYLFLSD 148 (176)
T ss_dssp CTTCCEEEEES
T ss_pred CCCCCEEECCC
Confidence 44455555544
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=2e-06 Score=83.88 Aligned_cols=104 Identities=21% Similarity=0.137 Sum_probs=65.0
Q ss_pred cCCCcccE--EEcCCCCccccCccc----cCCccCCEEecCCCCCCcc---chhhhccCCCcEEeccCCccccccchhhc
Q 044882 150 FKLQRLRA--FSLRGYHIFELPDSI----GDLRYLRYLNLSGTEIRTL---PESVNKLYNLHSLLLEDCDRLKKLCADMG 220 (815)
Q Consensus 150 ~~l~~Lr~--L~L~~~~i~~lp~~~----~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 220 (815)
...+.|+. ++++.|....++..+ .++++|++|+|++|.|..+ |..++.+++|++|+|++| .+..+. .+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhh
Confidence 33344544 555666544433222 4567888888888887754 356678888888888887 565552 345
Q ss_pred CcC--CcceeeccCCCccccccc-------ccccccccccccce
Q 044882 221 NLA--KLHHLKNSNTKSLEEMPV-------GIGRLTSLQTLCNF 255 (815)
Q Consensus 221 ~L~--~L~~L~l~~~~~l~~~p~-------~i~~L~~L~~L~~~ 255 (815)
.++ +|++|++++|.....+|. .+..+++|+.|+..
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 555 788888888874444442 25667777777543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=2.8e-06 Score=87.73 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=41.5
Q ss_pred ccCCCCCCceEEeccCCCcccccCCCCCCCCcceEEeccccccccccccc--CCCCCcCcEEecC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSFPEGGLPCAKLTRLEISSCKRLEALPKGL--HNLTSLQELTIGR 654 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~ 654 (815)
.+..+|+|+.|.|++|... .++. + .+++|+.|+|..|.+.......+ ..+|+|+.|+|+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 4456789999999887433 2333 3 37899999999887644332333 3689999999864
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.94 E-value=0.00068 Score=71.52 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=66.9
Q ss_pred cccccccccccccccccccCcccccCCCCCCceEEeccCCCccccc-CCCCCCCCcceEEecccccccccccccCCCCCc
Q 044882 569 IHKCDNIRTLTVEEGIQSSSSRSGLHNLRQLQEISIRRCGNLVSFP-EGGLPCAKLTRLEISSCKRLEALPKGLHNLTSL 647 (815)
Q Consensus 569 l~~~~~L~~l~ls~n~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 647 (815)
+.+|.+|+.+.+. +.+..+....|.++.+|+.+.|..+ ++.+. .+|..|.+|+.+.|..+ ....-...|.++++|
T Consensus 284 F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 284 FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 5577788777764 4455555667888999999999754 45454 47888999999999764 333334578899999
Q ss_pred CcEEecCCCCCCCCCCCCCCCCCceEEEcCC
Q 044882 648 QELTIGRGVELPSLKEDGLPTNLQSLTIEGN 678 (815)
Q Consensus 648 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 678 (815)
+.+++.++... ........+|+.+.+..+
T Consensus 360 ~~i~~~~~~~~--~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 360 NNIEYSGSRSQ--WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CEEEESSCHHH--HHTCBCCCCC--------
T ss_pred CEEEECCceee--hhhhhccCCCCEEEeCCC
Confidence 99999986321 122334556666666543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=9.9e-06 Score=72.79 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=48.3
Q ss_pred cccceEEEeccCCcccCchhhhcCCCCCcceEEEeccCCchhhhcccccc------ccceEecccccccccccccccccc
Q 044882 513 SVLKKIEIRECDALKSLPEAWMCGTNSSLEDMSIRQCHSLTYIAAVQLPL------SLKNLLIHKCDNIRTLTVEEGIQS 586 (815)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~l~~------~L~~l~l~~~~~L~~l~ls~n~~~ 586 (815)
..|++|++++|. ++......+ ..+++|++|++++|..+++.....+.. +|+.|++++|++++.-.+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------ 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI------ 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH------
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH------
Confidence 368888888887 443332222 678899999999998777655443321 344455554444433222
Q ss_pred cCcccccCCCCCCceEEeccCCC
Q 044882 587 SSSRSGLHNLRQLQEISIRRCGN 609 (815)
Q Consensus 587 ~~~~~~~~~l~~L~~L~l~~~~~ 609 (815)
..+..+++|++|++++|+.
T Consensus 133 ----~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 133 ----IALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp ----HHGGGCTTCCEEEEESCTT
T ss_pred ----HHHhcCCCCCEEECCCCCC
Confidence 1233445555555555543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.92 E-value=8.9e-06 Score=79.27 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=65.2
Q ss_pred cCCCcccEEEcCCCCcccc---CccccCCccCCEEecCCCCCCccchhhhccC--CCcEEeccCCccccccc-------h
Q 044882 150 FKLQRLRAFSLRGYHIFEL---PDSIGDLRYLRYLNLSGTEIRTLPESVNKLY--NLHSLLLEDCDRLKKLC-------A 217 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~~i~~l---p~~~~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp-------~ 217 (815)
..+++|++|+|++|+|+.+ |..++.+++|++|+|++|.|..+ ..+..+. +|++|+|++|.....+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5688999999999999865 46678999999999999999987 4466666 99999999995444444 2
Q ss_pred hhcCcCCcceeec
Q 044882 218 DMGNLAKLHHLKN 230 (815)
Q Consensus 218 ~i~~L~~L~~L~l 230 (815)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678999999974
No 158
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.87 E-value=5.2e-06 Score=94.31 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=54.0
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCCCcccccchhHHHHHHH
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSNSISRFLMHDLINDLAQ 74 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~mHdlv~d~a~ 74 (815)
.|||+||+|+.|+++.+++.|+++| ++.|+.++++|+++||++... ...+|+|||++++++.
T Consensus 376 L~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 376 DRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 3899999999999999999999998 135889999999999999853 4578999999999763
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.80 E-value=0.0039 Score=65.29 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=38.3
Q ss_pred CcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCCCCCCcc
Q 044882 691 GFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGDCPKLKY 769 (815)
Q Consensus 691 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~c~~l~~ 769 (815)
.|.++++|+.+.+.+ +.++.++. .+|..+++|+.+++.. .++.|.. .|.+|++|+.+.|.. +++.
T Consensus 281 aF~~c~~L~~i~l~~--~~i~~I~~--------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v~~ 346 (379)
T 4h09_A 281 LCSGCSNLTKVVMDN--SAIETLEP--------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SITL 346 (379)
T ss_dssp TTTTCTTCCEEEECC--TTCCEECT--------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TCCE
T ss_pred ccccccccccccccc--cccceehh--------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--ccCE
Confidence 455666666666654 44555554 3445556666666653 3555554 566666666666642 3444
Q ss_pred cCC
Q 044882 770 FPE 772 (815)
Q Consensus 770 l~~ 772 (815)
+..
T Consensus 347 I~~ 349 (379)
T 4h09_A 347 IES 349 (379)
T ss_dssp ECT
T ss_pred Ech
Confidence 443
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=1.4e-05 Score=74.08 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=48.6
Q ss_pred ccCCCcccEEEcCCCCccc-----cCccccCCccCCEEecCCCCCCc-----cchhhhccCCCcEEec--cCCccccc--
Q 044882 149 LFKLQRLRAFSLRGYHIFE-----LPDSIGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLL--EDCDRLKK-- 214 (815)
Q Consensus 149 ~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L--~~~~~l~~-- 214 (815)
+...+.|++|+|++|.+.. +...+...+.|++|+|++|.|.. +...+...++|++|+| ++| .+..
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 3455666777777666652 23444455666777777766653 3455555566777777 555 3321
Q ss_pred ---cchhhcCcCCcceeeccCCC
Q 044882 215 ---LCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 215 ---lp~~i~~L~~L~~L~l~~~~ 234 (815)
+...+...++|++|++++|.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCcCEEeccCCC
Confidence 33334445666677666665
No 161
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=1.2e-05 Score=74.58 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred ccccCCCcccEEEcCCC-Ccc-----ccCccccCCccCCEEecCCCCCCc-----cchhhhccCCCcEEeccCCccccc-
Q 044882 147 PKLFKLQRLRAFSLRGY-HIF-----ELPDSIGDLRYLRYLNLSGTEIRT-----LPESVNKLYNLHSLLLEDCDRLKK- 214 (815)
Q Consensus 147 ~~~~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~- 214 (815)
..+...+.|++|+|++| .+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++| .+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 34467889999999999 876 345667778999999999999973 4566677789999999999 5543
Q ss_pred ----cchhhcCcCCcceeec--cCCCcccc-----ccccccccccccccc
Q 044882 215 ----LCADMGNLAKLHHLKN--SNTKSLEE-----MPVGIGRLTSLQTLC 253 (815)
Q Consensus 215 ----lp~~i~~L~~L~~L~l--~~~~~l~~-----~p~~i~~L~~L~~L~ 253 (815)
+...+...+.|++|++ ++|. ++. +...+...++|++|+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEe
Confidence 5666778889999999 7787 443 223344556677664
No 162
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.71 E-value=1.7e-05 Score=98.09 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=58.2
Q ss_pred CeEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCC-CcccccchhHHHHHHHHHhcc
Q 044882 1 AYCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSN-SISRFLMHDLINDLAQWAAGE 79 (815)
Q Consensus 1 ~ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~~~~~ 79 (815)
.|||+||+|+.|+++.+++.|.++ ++.++.++++|++++|++.... ...+|+|||+||++|+..+.+
T Consensus 384 ~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 384 TDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 389999999999999999999654 3678999999999999997653 234699999999999998766
Q ss_pred c
Q 044882 80 I 80 (815)
Q Consensus 80 ~ 80 (815)
+
T Consensus 452 ~ 452 (1249)
T 3sfz_A 452 Q 452 (1249)
T ss_dssp G
T ss_pred H
Confidence 5
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.61 E-value=0.00075 Score=70.85 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=75.2
Q ss_pred ccCCCCCCceEEeccCCCcccc-cCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCCCCCCCCCC--CCCC
Q 044882 592 GLHNLRQLQEISIRRCGNLVSF-PEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGVELPSLKED--GLPT 668 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~ 668 (815)
.+..+..|+.+.+..+ ...+ ..++..+..|+.+.+..+ ....-...+.++.+|+.+.+..+ ++.++.. ..+.
T Consensus 212 ~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCT
T ss_pred ccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--ceecccccccccc
Confidence 3444555555555433 2222 234555666666666553 22222334556666666666543 3333322 3556
Q ss_pred CCceEEEcCCcchhhhhhhcCcCcccCCCccEEEEeccCCCcccCCCCccccccccCCCCCCccceEEecCCCCCccccc
Q 044882 669 NLQSLTIEGNMEIWKSMIERGRGFHRFSSLRQLTIINCDDDMVSFPPKADDKRLGTALPLPASLTSLWISGFPNLERLSS 748 (815)
Q Consensus 669 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 748 (815)
+|+.+.+.++.... . ....|.++.+|+.+.+.. +++.+.. .+|..+++|+.+.+.. .++.|..
T Consensus 287 ~L~~i~l~~~~i~~--I--~~~aF~~c~~L~~i~lp~---~l~~I~~--------~aF~~C~~L~~i~ip~--~v~~I~~ 349 (379)
T 4h09_A 287 NLTKVVMDNSAIET--L--EPRVFMDCVKLSSVTLPT---ALKTIQV--------YAFKNCKALSTISYPK--SITLIES 349 (379)
T ss_dssp TCCEEEECCTTCCE--E--CTTTTTTCTTCCEEECCT---TCCEECT--------TTTTTCTTCCCCCCCT--TCCEECT
T ss_pred ccccccccccccce--e--hhhhhcCCCCCCEEEcCc---cccEEHH--------HHhhCCCCCCEEEECC--ccCEEch
Confidence 67777666543211 1 115677888888888864 3666665 4566677888877754 3666654
Q ss_pred -cCCC
Q 044882 749 -SIVD 752 (815)
Q Consensus 749 -~~~~ 752 (815)
.|.+
T Consensus 350 ~aF~~ 354 (379)
T 4h09_A 350 GAFEG 354 (379)
T ss_dssp TTTTT
T ss_pred hHhhC
Confidence 3443
No 164
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.91 E-value=0.00048 Score=77.19 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=53.6
Q ss_pred eEeecCCCCccChhhHHHHHHHcCCccCCCCCCChHHHHHHHHHHHHhCCCceeeCC-CcccccchhHHHHHHHHHh
Q 044882 2 YCSLFPKDYEFEEEEIILLWCAVGLLDHGESGNPSEDLGRKFFRELRARSFIQQSSN-SISRFLMHDLINDLAQWAA 77 (815)
Q Consensus 2 ycslfPed~~i~~~~Li~~WiaeG~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~mHdlv~d~a~~~~ 77 (815)
|||+||+|+.|+++.++..|.++ .+.+..++++|++++|++.... ...+|+|||++|+++....
T Consensus 385 ~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 385 DLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 79999999999999999999543 2457899999999999986542 3457999999999998773
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.49 E-value=0.0038 Score=53.32 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=41.3
Q ss_pred cEEEcCCCCcc--ccCccccCCccCCEEecCCCCCCccc-hhhhccCCCcEEeccCC
Q 044882 156 RAFSLRGYHIF--ELPDSIGDLRYLRYLNLSGTEIRTLP-ESVNKLYNLHSLLLEDC 209 (815)
Q Consensus 156 r~L~L~~~~i~--~lp~~~~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 209 (815)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+| ..+..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 47788888888 8887653 46888999999998887 45678888888888887
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.25 E-value=0.056 Score=49.41 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=50.4
Q ss_pred cCCCcccEEEcCCC-Ccc-----ccCccccCCccCCEEecCCCCCC-----ccchhhhccCCCcEEeccCCcccc-----
Q 044882 150 FKLQRLRAFSLRGY-HIF-----ELPDSIGDLRYLRYLNLSGTEIR-----TLPESVNKLYNLHSLLLEDCDRLK----- 213 (815)
Q Consensus 150 ~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~----- 213 (815)
..-+.|+.|+|+++ .|. .+-+++..-..|+.|+|++|.|. .+-..+..-+.|++|+|++| .+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 34456777777764 554 23345555677788888877776 23345555567788888777 433
Q ss_pred ccchhhcCcCCcceeeccCC
Q 044882 214 KLCADMGNLAKLHHLKNSNT 233 (815)
Q Consensus 214 ~lp~~i~~L~~L~~L~l~~~ 233 (815)
.+-..+..=+.|++|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 22233444456777777654
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.12 E-value=0.063 Score=45.65 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=32.1
Q ss_pred eEEeccCCCcc--cccCCCCCCCCcceEEecccccccccccccCCCCCcCcEEecCCC
Q 044882 601 EISIRRCGNLV--SFPEGGLPCAKLTRLEISSCKRLEALPKGLHNLTSLQELTIGRGV 656 (815)
Q Consensus 601 ~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 656 (815)
.++.+++. ++ .+|..+. ++|++|+|++|.+...-+..|..+++|+.|+|++|+
T Consensus 12 ~v~Cs~~~-L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRG-LTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSC-CCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCC-CccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 44444443 33 5555433 367777777777655545556677777777777774
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.69 E-value=0.11 Score=47.46 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=72.1
Q ss_pred cCCCceEEccccCCcCcCCCccc----cccccccCCCcccEEEcCCCCcc-----ccCccccCCccCCEEecCCCCCCc-
Q 044882 121 DIQHLRTFLPVTLSNSSRGHLAY----SILPKLFKLQRLRAFSLRGYHIF-----ELPDSIGDLRYLRYLNLSGTEIRT- 190 (815)
Q Consensus 121 ~~~~Lr~L~~~~~~~~~~~~~~~----~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~L~~~~i~~- 190 (815)
+-+.|+.|.+..+. .+.. .+...+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|++|.|..
T Consensus 39 ~n~~L~~L~L~~nn-----~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMK-----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSSCCEEECTTCC-----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred cCCCccEEECCCCC-----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 45567777665431 1221 23344566678999999999987 234555566889999999999982
Q ss_pred ----cchhhhccCCCcEEeccCCcc--cc-----ccchhhcCcCCcceeeccCCC
Q 044882 191 ----LPESVNKLYNLHSLLLEDCDR--LK-----KLCADMGNLAKLHHLKNSNTK 234 (815)
Q Consensus 191 ----lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 234 (815)
+-..+..-+.|++|+|+++.. +. .+-..+..=+.|+.|+++.+.
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 334455556799999986521 22 233345555789999988765
No 169
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=36.35 E-value=6.6 Score=24.19 Aligned_cols=9 Identities=33% Similarity=1.069 Sum_probs=7.8
Q ss_pred eecCCCCcc
Q 044882 4 SLFPKDYEF 12 (815)
Q Consensus 4 slfPed~~i 12 (815)
++||++|+|
T Consensus 30 ~mLP~GYkI 38 (39)
T 3lqv_P 30 AMFPEGYKV 38 (39)
T ss_dssp HTCCSSEEE
T ss_pred HhCCCCccc
Confidence 589999987
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.18 E-value=64 Score=25.26 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=26.0
Q ss_pred cCCCCCCccceEEecCCCCCccccc-cCCCCCCCCeeeeCC
Q 044882 724 TALPLPASLTSLWISGFPNLERLSS-SIVDLQNLASLYLGD 763 (815)
Q Consensus 724 ~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~i~~ 763 (815)
.+|..+++|+++.|-. .++.|.. .|.+|.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 4556667777777765 4566654 677788888888865
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.31 E-value=1.8e+02 Score=22.66 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=16.4
Q ss_pred ccCCCCCCceEEeccCCCcccc-cCCCCCCCCcceEEecc
Q 044882 592 GLHNLRQLQEISIRRCGNLVSF-PEGGLPCAKLTRLEISS 630 (815)
Q Consensus 592 ~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~ 630 (815)
.|.++.+|+.+.|-.+ ++.+ ..+|..|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 4455555555555432 2222 22344455555555443
Done!