BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044883
MDDAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVRRCFMLEFDRAAFIIASTATEDEMLNW
YREHVVWADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANTMLSKDKILSS
VESRNNTRESKSVNSSRKIGGFGQSQATARRVLEFIDDANYTLAIPPESPPGPDDLNIDT

High Scoring Gene Products

Symbol, full name Information P value
KOB1
KOBITO
protein from Arabidopsis thaliana 5.6e-52
AT3G57200 protein from Arabidopsis thaliana 6.0e-48
AT2G41451 protein from Arabidopsis thaliana 3.9e-44

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044883
        (180 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2077858 - symbol:KOB1 "KOBITO" species:3702 "A...   539  5.6e-52   1
TAIR|locus:2082573 - symbol:AT3G57200 "AT3G57200" species...   501  6.0e-48   1
TAIR|locus:4515102980 - symbol:AT2G41451 species:3702 "Ar...   465  3.9e-44   1


>TAIR|locus:2077858 [details] [associations]
            symbol:KOB1 "KOBITO" species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM] [GO:0009826 "unidimensional
            cell growth" evidence=IMP] [GO:0009543 "chloroplast thylakoid
            lumen" evidence=ISS] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0009831 "plant-type cell wall modification involved in
            multidimensional cell growth" evidence=IMP] [GO:0030244 "cellulose
            biosynthetic process" evidence=RCA;IMP] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0009737 "response to abscisic acid stimulus"
            evidence=IMP] [GO:0009749 "response to glucose stimulus"
            evidence=RCA;IMP] [GO:0005794 "Golgi apparatus" evidence=IDA]
            [GO:0009663 "plasmodesma organization" evidence=IMP] [GO:0006084
            "acetyl-CoA metabolic process" evidence=RCA] [GO:0009744 "response
            to sucrose stimulus" evidence=RCA] [GO:0009750 "response to
            fructose stimulus" evidence=RCA] [GO:0016126 "sterol biosynthetic
            process" evidence=RCA] [GO:0016132 "brassinosteroid biosynthetic
            process" evidence=RCA] [GO:0048193 "Golgi vesicle transport"
            evidence=RCA] [GO:0005768 "endosome" evidence=IDA] [GO:0005802
            "trans-Golgi network" evidence=IDA] [GO:0016757 "transferase
            activity, transferring glycosyl groups" evidence=ISM] GO:GO:0005886
            GO:GO:0009737 GO:GO:0005794 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0005768 GO:GO:0009749 GO:GO:0009826 GO:GO:0005802
            EMBL:AC012562 GO:GO:0030244 GO:GO:0009663 GO:GO:0009831
            eggNOG:NOG145043 HOGENOM:HOG000006183 EMBL:AF543710 IPI:IPI00548588
            RefSeq:NP_187467.1 UniGene:At.17601 STRING:Q9C9Z9 PaxDb:Q9C9Z9
            PRIDE:Q9C9Z9 EnsemblPlants:AT3G08550.1 GeneID:820002
            KEGG:ath:AT3G08550 TAIR:At3g08550 InParanoid:Q9C9Z9 OMA:EEEMRNW
            PhylomeDB:Q9C9Z9 ProtClustDB:CLSN2915582 Genevestigator:Q9C9Z9
            Uniprot:Q9C9Z9
        Length = 533

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 107/181 (59%), Positives = 139/181 (76%)

Query:     1 MDDAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVRRCFMLEFDRAAFIIASTATEDEMLNW 60
             +++AAVLHYTY+KFSDLTSRRDRCGCKPTKEDV+RCFML+FDR+AFIIASTAT++EML+W
Sbjct:   360 LEEAAVLHYTYSKFSDLTSRRDRCGCKPTKEDVKRCFMLDFDRSAFIIASTATDEEMLSW 419

Query:    61 YREHVVWADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANTMLSKDKILSS 120
             YREHVVW DK +K KL+ KGILTRIY+PM++ Q L+ESG+++SV++SA+T LSK K LSS
Sbjct:   420 YREHVVWGDKDVKTKLLRKGILTRIYSPMVVIQALKESGVFSSVVSSASTNLSKKKFLSS 479

Query:   121 VESRNNTRESKSVNSSRKIGGFGQSQA-TARRVLEFIDDANYTLAIPPESPPGPDDLNID 179
             +   N++R + S +   K     +S+  +AR +LE         AIPP SPPG +     
Sbjct:   480 IHKSNSSRSTASESLPSKES---KSEGISARHLLEAES------AIPPLSPPGMEQARFF 530

Query:   180 T 180
             T
Sbjct:   531 T 531


>TAIR|locus:2082573 [details] [associations]
            symbol:AT3G57200 "AT3G57200" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0016757 "transferase activity,
            transferring glycosyl groups" evidence=ISM] EMBL:CP002686
            GenomeReviews:BA000014_GR eggNOG:NOG145043 HOGENOM:HOG000006183
            EMBL:AY735623 EMBL:AY954853 IPI:IPI00532374 RefSeq:NP_191279.3
            UniGene:At.51006 PRIDE:Q5XV99 EnsemblPlants:AT3G57200.1
            GeneID:824887 KEGG:ath:AT3G57200 TAIR:At3g57200 InParanoid:Q5XV99
            OMA:VLHYTYP PhylomeDB:Q5XV99 ProtClustDB:CLSN2918827
            Genevestigator:Q5XV99 Uniprot:Q5XV99
        Length = 514

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 105/176 (59%), Positives = 132/176 (75%)

Query:     1 MDDAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVRRCFMLEFDRAAFIIASTATEDEMLNW 60
             +++AAVLHYTY +FSDLTSRRDRCGCKPTK DV+RCFMLEFDRAAFIIASTA+ +EML W
Sbjct:   346 LEEAAVLHYTYPRFSDLTSRRDRCGCKPTKVDVKRCFMLEFDRAAFIIASTASSEEMLQW 405

Query:    61 YREHVVWADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANTMLSKDKILSS 120
             YREHVVW D+ LK KL+ KGILTRIYAPM+I Q LRE+G+++SV+ +A+   SK+   S+
Sbjct:   406 YREHVVWTDEKLKLKLLRKGILTRIYAPMVIIQELREAGVFSSVVIAAHKSPSKNS--ST 463

Query:   121 VESRNN-TRESKSVNSSRKIGGFGQSQATARRVLEF---IDDANYTLAIPPESPPG 172
              +S +  TRES     S++ G         RRVLEF   +D  +   A+PP+SPPG
Sbjct:   464 ADSTSGITRES-----SQETG--------KRRVLEFHLDVDGESQASAVPPQSPPG 506


>TAIR|locus:4515102980 [details] [associations]
            symbol:AT2G41451 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0016757 "transferase
            activity, transferring glycosyl groups" evidence=ISM] EMBL:CP002685
            GenomeReviews:CT485783_GR EMBL:AC004625 IPI:IPI00892071
            RefSeq:NP_001118499.1 UniGene:At.74317 PaxDb:B3H5R0 PRIDE:B3H5R0
            EnsemblPlants:AT2G41451.1 GeneID:6241352 KEGG:ath:AT2G41451
            TAIR:At2g41451 eggNOG:NOG145043 HOGENOM:HOG000006183 OMA:FMAREAS
            PhylomeDB:B3H5R0 Genevestigator:B3H5R0 Uniprot:B3H5R0
        Length = 451

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 86/123 (69%), Positives = 105/123 (85%)

Query:     1 MDDAAVLHYTYTKFSDLTSRRDRCGCKPTKEDVRRCFMLEFDRAAFIIASTATEDEMLNW 60
             +D+AA+LHYTY+KFSDLTSRRDRCGCKPTK+DV+RCFML+FDRAAFIIAST+T +EML W
Sbjct:   327 LDEAAILHYTYSKFSDLTSRRDRCGCKPTKKDVKRCFMLDFDRAAFIIASTSTSEEMLQW 386

Query:    61 YREHVVWADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANTMLSKDKILSS 120
             YRE VVW D  L  KL+ KGILTRIYAPM+I Q LRE+G+++SV+ SA+  LSK++  SS
Sbjct:   387 YRERVVWTDDNLILKLLRKGILTRIYAPMVIIQELREAGVFSSVVTSAHMSLSKNRSNSS 446

Query:   121 VES 123
               S
Sbjct:   447 TSS 449


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.381    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      180       180   0.00092  109 3  11 22  0.42    32
                                                     31  0.39    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.75u 0.11s 17.86t   Elapsed:  00:00:01
  Total cpu time:  17.75u 0.11s 17.86t   Elapsed:  00:00:01
  Start:  Fri May 10 15:31:06 2013   End:  Fri May 10 15:31:07 2013

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