BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044883
         (180 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8L568|LEUD_FRASN 3-isopropylmalate dehydratase small subunit OS=Frankia sp. (strain
           EAN1pec) GN=leuD PE=3 SV=1
          Length = 195

 Score = 31.2 bits (69), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 62  REHVVWADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANTMLSKDKILSSV 121
           REH VWA +    + ++      I+    +  GL        V+  A+T+   + + ++V
Sbjct: 77  REHAVWALQDYGFRAVLSPRFADIFRGNALGNGL------LPVVLPADTV---EALTAAV 127

Query: 122 ESRNNTR-----ESKSVNSSRKIGGFGQSQATARRVLEFIDDANYTL 163
           E+   T       ++ V  + ++ GF     T  R++E +DD   TL
Sbjct: 128 EADPTTEITVDLVAREVRGAGQVAGFELDDFTRWRLMEGLDDVGLTL 174


>sp|Q54NC6|APC1_DICDI Anaphase-promoting complex subunit 1 OS=Dictyostelium discoideum
           GN=anapc1 PE=3 SV=1
          Length = 2269

 Score = 30.8 bits (68), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 42  DRAAFIIASTATEDEMLNWYREHVVWADK-TLKKKLMMKGILTRIYAPMIIN 92
           ++   ++ ++  E+  L WY+  VVW+   T+KKK  +  +L+ +  P I N
Sbjct: 76  EKGMILVNNSFFEEAQLFWYQNTVVWSSPFTVKKKFTLPLLLSSMIYPKINN 127


>sp|Q6UDH0|PORTL_PSHV1 Portal protein UL6 OS=Psittacid herpesvirus 1 (isolate Amazon
           parrot/-/97-0001/1997) GN=UL6 PE=3 SV=1
          Length = 782

 Score = 30.0 bits (66), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 36/156 (23%)

Query: 22  DRCGCKPTKEDVRRCF----MLEFDRAAFIIASTATEDEMLNWYREH--------VVWAD 69
           D  GC      + RCF    ++ +DR   I+ S   E   L  Y  H        V W  
Sbjct: 235 DMLGC------LERCFRAARVMNYDRTVVIMHSATRE---LRAYDVHTRERGGCVVAWDP 285

Query: 70  KTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANT-------MLSKDKILSSVE 122
              ++ ++    + R+YA ++  Q +RE   +A +   ANT          +DK+ +   
Sbjct: 286 MLTERGIVFDSPMQRLYAAVLRTQAVRE---HAKLCQLANTAPVSVLVARREDKVAA--- 339

Query: 123 SRNNTRESKSVNSSRKIGGFGQSQATARRVLEFIDD 158
             +    SK V+ +   G     Q+ A ++++FI D
Sbjct: 340 --DPAGVSKLVDKALGEGAEEAGQSAAAKLIKFIID 373


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,397,243
Number of Sequences: 539616
Number of extensions: 2178267
Number of successful extensions: 6634
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6627
Number of HSP's gapped (non-prelim): 15
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)