Query 044883
Match_columns 180
No_of_seqs 36 out of 38
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 13:21:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ax2_A Mitochondrial import re 73.3 7.6 0.00026 27.3 5.4 60 29-88 9-68 (73)
2 1om2_A Protein (mitochondrial 50.0 32 0.0011 25.2 5.3 67 28-96 11-77 (95)
3 3omd_A Uncharacterized protein 41.1 27 0.00092 27.4 3.9 35 32-66 51-87 (145)
4 2kmu_A ATP-dependent DNA helic 37.7 12 0.0004 25.3 1.2 11 25-35 25-35 (56)
5 3e3v_A Regulatory protein RECX 35.2 63 0.0022 24.7 5.1 56 58-113 56-111 (177)
6 3c1d_A Protein ORAA, regulator 34.7 78 0.0027 23.6 5.4 42 68-110 63-104 (159)
7 3dfg_A Xcrecx, regulatory prot 34.3 72 0.0024 24.0 5.2 44 68-112 65-108 (162)
8 3d5l_A Regulatory protein RECX 34.3 66 0.0023 25.4 5.2 71 42-112 65-153 (221)
9 1e0b_A SWI6 protein; chromatin 32.6 19 0.00064 24.8 1.6 23 48-70 45-67 (68)
10 3dd7_A DOC, death on curing pr 21.4 57 0.0019 24.6 2.5 61 3-70 54-127 (135)
11 2l61_A EC protein I/II; metall 21.2 26 0.00088 21.1 0.5 7 21-27 5-11 (26)
12 3cxb_B Pleckstrin homology dom 20.6 13 0.00044 25.6 -1.1 29 34-63 66-95 (112)
13 4b14_A Glycylpeptide N-tetrade 20.4 36 0.0012 30.4 1.4 40 29-68 232-274 (385)
No 1
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=73.25 E-value=7.6 Score=27.32 Aligned_cols=60 Identities=12% Similarity=0.154 Sum_probs=50.9
Q ss_pred ChhhhhhhhhhhhhhhHHHhhhcccHHHHHHHHhhhccccchHHHHHHHhhhhHhHhhhh
Q 044883 29 TKEDVRRCFMLEFDRAAFIIASTATEDEMLNWYREHVVWADKTLKKKLMMKGILTRIYAP 88 (180)
Q Consensus 29 TkeDVkrCfmL~FDR~AFIiast~teeem~~wy~erVvw~d~~~~~kLlrkGiltRiy~P 88 (180)
..|++++.||-+-..-=-.++....++....+|+.-.|+..+.--+..+.+.+=-.||.+
T Consensus 9 d~e~~e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~tlP~~vf~~ 68 (73)
T 3ax2_A 9 DAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQM 68 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCHHHHHH
Confidence 467899999988776555566666788899999999999999999999999988888876
No 2
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=49.95 E-value=32 Score=25.25 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=54.9
Q ss_pred CChhhhhhhhhhhhhhhHHHhhhcccHHHHHHHHhhhccccchHHHHHHHhhhhHhHhhhhHHHHHHHH
Q 044883 28 PTKEDVRRCFMLEFDRAAFIIASTATEDEMLNWYREHVVWADKTLKKKLMMKGILTRIYAPMIINQGLR 96 (180)
Q Consensus 28 PTkeDVkrCfmL~FDR~AFIiast~teeem~~wy~erVvw~d~~~~~kLlrkGiltRiy~P~~ii~~lr 96 (180)
-..|++++.||-+...-=-.++...-++...++|+.-.|+..+.--+..+.+.|=-.||.+ |++.|.
T Consensus 11 ~d~e~~e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~TlP~~Vf~~--Li~~l~ 77 (95)
T 1om2_A 11 KDAEAVQKFFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQTLPPPVFQM--LLTKLP 77 (95)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCCHHHHH--HHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHhhCCHHHHHH--HHHHHH
Confidence 3778999999988776544455555778899999999999999999999999998888887 666664
No 3
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=41.11 E-value=27 Score=27.39 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=26.6
Q ss_pred hhhhhhhhhhhhhHH--HhhhcccHHHHHHHHhhhcc
Q 044883 32 DVRRCFMLEFDRAAF--IIASTATEDEMLNWYREHVV 66 (180)
Q Consensus 32 DVkrCfmL~FDR~AF--Iiast~teeem~~wy~erVv 66 (180)
|=.=|--|..|..+| ++++..|+||++.|..++-.
T Consensus 51 D~~~l~flgI~~~~~~~~V~~~~sD~eil~wv~~~~~ 87 (145)
T 3omd_A 51 DQAFFSFFGLDHEKFAEAVKSRPQDQDMLAWVHSQSP 87 (145)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCCSHHHHHHHHHHHCG
T ss_pred HHHHHHHhCCCHHHHHHHHHcCCCHHHHHHHHHHHCC
Confidence 544555667777776 35678999999999999877
No 4
>2kmu_A ATP-dependent DNA helicase Q4; recql4, DNA-replication, homeodomain-like, ATP-BIN cataract, craniosynostosis, disease mutation, dwarfism; NMR {Homo sapiens}
Probab=37.72 E-value=12 Score=25.34 Aligned_cols=11 Identities=36% Similarity=0.857 Sum_probs=9.8
Q ss_pred CCCCChhhhhh
Q 044883 25 GCKPTKEDVRR 35 (180)
Q Consensus 25 gCKPTkeDVkr 35 (180)
|.||+++|||.
T Consensus 25 GRkP~k~DIk~ 35 (56)
T 2kmu_A 25 GRRPSQDDVEA 35 (56)
T ss_dssp CSCCCHHHHTT
T ss_pred CCCCCHHHHHc
Confidence 88999999984
No 5
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=35.24 E-value=63 Score=24.69 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHhhhccccchHHHHHHHhhhhHhHhhhhHHHHHHHHhhcchhHHHHhhccccc
Q 044883 58 LNWYREHVVWADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANTMLS 113 (180)
Q Consensus 58 ~~wy~erVvw~d~~~~~kLlrkGiltRiy~P~~ii~~lrEsGVFss~i~sa~~~~~ 113 (180)
+.++.+.=-=+|...-...++.-+-..-|.|..|.+.|+.-||=..+|..|-..+.
T Consensus 56 l~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~ 111 (177)
T 3e3v_A 56 INKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYT 111 (177)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 33333333335555555555555444469999999999999999999988766543
No 6
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.65 E-value=78 Score=23.56 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=30.5
Q ss_pred cchHHHHHHHhhhhHhHhhhhHHHHHHHHhhcchhHHHHhhcc
Q 044883 68 ADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANT 110 (180)
Q Consensus 68 ~d~~~~~kLlrkGiltRiy~P~~ii~~lrEsGVFss~i~sa~~ 110 (180)
+|...-...++.-+- +=|.|..|.|.|+.-||=..+|..|-.
T Consensus 63 dD~rfA~~~v~~~~~-~g~G~~~I~~eL~~KGI~~~~i~~al~ 104 (159)
T 3c1d_A 63 DDSRFVARFIASRSR-KGYGPARIRQELNQKGISREATEKAMR 104 (159)
T ss_dssp CHHHHHHHHHHHHHH-TTCCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCccHHHHHHHHHHcCCCHHHHHHHHH
Confidence 555555555544332 448999999999999999999987654
No 7
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=34.27 E-value=72 Score=23.97 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.5
Q ss_pred cchHHHHHHHhhhhHhHhhhhHHHHHHHHhhcchhHHHHhhcccc
Q 044883 68 ADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYASVIASANTML 112 (180)
Q Consensus 68 ~d~~~~~kLlrkGiltRiy~P~~ii~~lrEsGVFss~i~sa~~~~ 112 (180)
+|...-..+++.-+- +=|.|..|.|.|+.-||=..+|..|-..+
T Consensus 65 dD~rfA~~~v~~~~~-~~~G~~~I~~eL~~KGI~~~~I~~al~~~ 108 (162)
T 3dfg_A 65 DDVRFAASVVRNRAS-SGYGPLHIRAELGTHGLDSDAVSAAMATF 108 (162)
T ss_dssp CHHHHHHHHHHHHHT-TTCCHHHHHHHHHHTTCCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHH-ccccHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 444444444444333 46899999999999999999998776554
No 8
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=34.25 E-value=66 Score=25.35 Aligned_cols=71 Identities=27% Similarity=0.247 Sum_probs=45.6
Q ss_pred hhhHHHhhh-cccHHHHHHHHhhhcc-----------------ccchHHHHHHHhhhhHhHhhhhHHHHHHHHhhcchhH
Q 044883 42 DRAAFIIAS-TATEDEMLNWYREHVV-----------------WADKTLKKKLMMKGILTRIYAPMIINQGLRESGIYAS 103 (180)
Q Consensus 42 DR~AFIias-t~teeem~~wy~erVv-----------------w~d~~~~~kLlrkGiltRiy~P~~ii~~lrEsGVFss 103 (180)
+++...++- ..|+.|+++...++-. =+|...-...++.-+-.+-|.|..|.|.|+.-||=..
T Consensus 65 ~~Al~~Ls~r~~S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~G~~~I~~eL~~KGI~~~ 144 (221)
T 3d5l_A 65 SRMLDYLSYQMRTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPGIIRQHLRQKGIGES 144 (221)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhccccccHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHcCCCHH
Confidence 344444444 7777777776665422 1333333334443333456899999999999999999
Q ss_pred HHHhhcccc
Q 044883 104 VIASANTML 112 (180)
Q Consensus 104 ~i~sa~~~~ 112 (180)
+|..|-..+
T Consensus 145 ~I~~al~~~ 153 (221)
T 3d5l_A 145 DIDDALTQF 153 (221)
T ss_dssp HHHHHGGGC
T ss_pred HHHHHHHhC
Confidence 998776554
No 9
>1e0b_A SWI6 protein; chromatin-binding, chromodomain, shadow, heterochromatin; HET: 1PG; 1.9A {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=32.57 E-value=19 Score=24.82 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=13.1
Q ss_pred hhhcccHHHHHHHHhhhccccch
Q 044883 48 IASTATEDEMLNWYREHVVWADK 70 (180)
Q Consensus 48 iast~teeem~~wy~erVvw~d~ 70 (180)
+|...-..-|.++|++|++|.+.
T Consensus 45 ~a~~kcPq~vI~FYE~~l~~~~~ 67 (68)
T 1e0b_A 45 ITNKKCPQKMLQFYESHLTFREN 67 (68)
T ss_dssp HHHHHSHHHHHHHHHTCC-----
T ss_pred HhHhhCCHHHHHHHHHheeeccC
Confidence 33444456689999999999753
No 10
>3dd7_A DOC, death on curing protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1} PDB: 3dd9_A 3k33_A 3kh2_A
Probab=21.39 E-value=57 Score=24.64 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=34.9
Q ss_pred cceeeeeeccc---ccccccccc---------cCCCCCCh-hhhhhhhhhhhhhhHHHhhhcccHHHHHHHHhhhccccc
Q 044883 3 DAAVLHYTYTK---FSDLTSRRD---------RCGCKPTK-EDVRRCFMLEFDRAAFIIASTATEDEMLNWYREHVVWAD 69 (180)
Q Consensus 3 EaAVLHytY~k---fsdltsRrd---------RCgCKPTk-eDVkrCfmL~FDR~AFIiast~teeem~~wy~erVvw~d 69 (180)
-||.|+|...| |.|=-.|-. ..|..... +++- |-+.-|..+..+++++.+|++++++-.|
T Consensus 54 kAA~l~~~l~~~HpF~DGNKRta~~~~~~fL~~nG~~~~~~~e~~-------~l~~~vA~g~~~~~~ia~wLr~~~~~~~ 126 (135)
T 3dd7_A 54 VSATYLVATARGYIFNDANKRTALNSALLFLRRNGVQVFDSPELA-------DLTVGAATGEISVSSVADTLRRLYGSAD 126 (135)
T ss_dssp HHHHHHHHHHHHCCBSSCHHHHHHHHHHHHHHHTTCCCCCCTTHH-------HHHHHHHTTSSCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHCCCCCCCcHHHH-------HHHHHHHcCCCCHHHHHHHHHHhccCCC
Confidence 36677776666 777666643 24443321 1111 2223344558899999999999998887
Q ss_pred h
Q 044883 70 K 70 (180)
Q Consensus 70 ~ 70 (180)
+
T Consensus 127 ~ 127 (135)
T 3dd7_A 127 P 127 (135)
T ss_dssp -
T ss_pred c
Confidence 6
No 11
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=21.22 E-value=26 Score=21.07 Aligned_cols=7 Identities=57% Similarity=1.725 Sum_probs=5.5
Q ss_pred cccCCCC
Q 044883 21 RDRCGCK 27 (180)
Q Consensus 21 rdRCgCK 27 (180)
-|||||+
T Consensus 5 nd~cGCp 11 (26)
T 2l61_A 5 DDKCGCA 11 (26)
T ss_dssp CGGGSSC
T ss_pred cCCCCCc
Confidence 3799995
No 12
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=20.58 E-value=13 Score=25.62 Aligned_cols=29 Identities=28% Similarity=0.583 Sum_probs=20.0
Q ss_pred hhhhhhhh-hhhHHHhhhcccHHHHHHHHhh
Q 044883 34 RRCFMLEF-DRAAFIIASTATEDEMLNWYRE 63 (180)
Q Consensus 34 krCfmL~F-DR~AFIiast~teeem~~wy~e 63 (180)
+-||.|.+ |..-|++ .+.++|||..|.+.
T Consensus 66 ~~~F~l~~~~~~~y~f-~A~s~ee~~~Wi~a 95 (112)
T 3cxb_B 66 PHAFQVILSDRPCLEL-SAESEAEMAEWMQH 95 (112)
T ss_dssp TTEEEEEETTSCCEEE-ECSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCEEEE-EcCCHHHHHHHHHH
Confidence 35999875 3433443 45779999999864
No 13
>4b14_A Glycylpeptide N-tetradecanoyltransferase; malaria, drug design; HET: NHW 4XB; 1.50A {Plasmodium vivax} PDB: 4b11_A* 4b12_A* 4b13_A* 4b10_A* 4a95_A*
Probab=20.35 E-value=36 Score=30.35 Aligned_cols=40 Identities=25% Similarity=0.448 Sum_probs=29.4
Q ss_pred Chhhhhhhhhhhhh-hhHHHhhhcccHHHHHHHH--hhhcccc
Q 044883 29 TKEDVRRCFMLEFD-RAAFIIASTATEDEMLNWY--REHVVWA 68 (180)
Q Consensus 29 TkeDVkrCfmL~FD-R~AFIiast~teeem~~wy--~erVvw~ 68 (180)
+++||..|.-|=-+ ..-|-++-.-++||+.+|+ ++.|||+
T Consensus 232 ~~~Dv~~v~~Ll~~yl~~f~l~~~f~~ee~~Hw~lp~~~Vi~s 274 (385)
T 4b14_A 232 KKKDVEGVHKLLGSYLEQFNLYAVFTKEEIAHWFLPIENVIYT 274 (385)
T ss_dssp CGGGHHHHHHHHHHHHTTSSEEECCCHHHHHHHHSCBTTTEEE
T ss_pred cHhhHHHHHHHHHHHHhcCCeeEecCHHHeeeeeecCCCeEEE
Confidence 88999999855211 1225577788999999999 5667775
Done!