BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044885
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp
 pdb|1IAX|B Chain B, Crystal Structure Of Acc Synthase Complexed With Plp
 pdb|1IAY|A Chain A, Crystal Structure Of Acc Synthase Complexed With Cofactor
           Plp And Inhibitor Avg
          Length = 428

 Score = 28.9 bits (63), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 11  FGQIAEILDEGQSSCCTQGFVYVILSL 37
           F  IAEILDE + + C +  V+++ SL
Sbjct: 240 FVSIAEILDEQEMTYCNKDLVHIVYSL 266


>pdb|1RHD|A Chain A, Structure Of Bovine Liver Rhodanese. I. Structure
           Determination At 2.5 Angstroms Resolution And A
           Comparison Of The Conformation And Sequence Of Its Two
           Domains
          Length = 293

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 93  RGW--DGQPITAAPARMIPSMFK 113
           R W  +G P+T+ P+R  P++FK
Sbjct: 131 RNWLKEGHPVTSEPSRPEPAIFK 153


>pdb|1DP2|A Chain A, Crystal Structure Of The Complex Between Rhodanese And
           Lipoate
          Length = 293

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 93  RGW--DGQPITAAPARMIPSMFK 113
           R W  +G P+T+ P+R  P++FK
Sbjct: 131 RNWLKEGHPVTSEPSRPEPAIFK 153


>pdb|1BOH|A Chain A, Sulfur-Substituted Rhodanese (Orthorhombic Form)
 pdb|1BOI|A Chain A, N-Terminally Truncated Rhodanese
 pdb|2ORA|A Chain A, Rhodanese (Thiosulfate: Cyanide Sulfurtransferase)
          Length = 296

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 93  RGW--DGQPITAAPARMIPSMFK 113
           R W  +G P+T+ P+R  P++FK
Sbjct: 131 RNWLKEGHPVTSEPSRPEPAIFK 153


>pdb|1ORB|A Chain A, Active Site Structural Features For Chemically Modified
           Forms Of Rhodanese
          Length = 296

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 93  RGW--DGQPITAAPARMIPSMFK 113
           R W  +G P+T+ P+R  P++FK
Sbjct: 131 RNWLKEGHPVTSEPSRPEPAIFK 153


>pdb|1RHS|A Chain A, Sulfur-Substituted Rhodanese
          Length = 296

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 93  RGW--DGQPITAAPARMIPSMFK 113
           R W  +G P+T+ P+R  P++FK
Sbjct: 131 RNWLKEGHPVTSEPSRPEPAIFK 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.142    0.510 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,408,537
Number of Sequences: 62578
Number of extensions: 121563
Number of successful extensions: 257
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)