Query 044885
Match_columns 114
No_of_seqs 113 out of 642
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044885.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044885hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 82.7 0.63 2.2E-05 26.8 1.7 12 47-58 38-49 (49)
2 3rk3_E Complexin-1; snare prot 79.7 0.96 3.3E-05 27.2 1.9 14 47-60 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 77.0 1.2 4.3E-05 27.9 1.9 14 47-60 45-58 (79)
4 2lug_A Myelin basic protein; i 16.9 55 0.0019 17.2 1.1 8 107-114 24-31 (36)
5 4egd_A Uncharacterized protein 16.7 51 0.0018 24.8 1.3 14 49-62 194-207 (260)
6 1zbd_B Rabphilin-3A; G protein 12.9 77 0.0026 21.3 1.3 15 74-88 100-114 (134)
7 3k6g_A Telomeric repeat-bindin 12.5 94 0.0032 20.5 1.6 13 47-59 75-87 (111)
8 1juq_A ADP-ribosylation factor 12.0 2.1E+02 0.0071 19.7 3.4 16 76-91 135-150 (171)
9 4dcu_A GTP-binding protein ENG 11.1 1.5E+02 0.0052 23.0 2.7 22 43-64 428-449 (456)
10 1yfb_A Transition state regula 11.1 1.3E+02 0.0046 17.2 1.8 14 49-62 27-40 (59)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=82.73 E-value=0.63 Score=26.80 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=10.5
Q ss_pred hHHHHHHHHhCC
Q 044885 47 VYRGKLRKKYGL 58 (114)
Q Consensus 47 ~~R~~iR~ky~I 58 (114)
..|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 469999999997
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=79.74 E-value=0.96 Score=27.23 Aligned_cols=14 Identities=36% Similarity=0.724 Sum_probs=11.6
Q ss_pred hHHHHHHHHhCCCC
Q 044885 47 VYRGKLRKKYGLQG 60 (114)
Q Consensus 47 ~~R~~iR~ky~I~g 60 (114)
..|+.||.||||.-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 46999999999974
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=77.03 E-value=1.2 Score=27.89 Aligned_cols=14 Identities=43% Similarity=0.755 Sum_probs=11.6
Q ss_pred hHHHHHHHHhCCCC
Q 044885 47 VYRGKLRKKYGLQG 60 (114)
Q Consensus 47 ~~R~~iR~ky~I~g 60 (114)
..|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 46999999999985
No 4
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=16.94 E-value=55 Score=17.24 Aligned_cols=8 Identities=25% Similarity=0.123 Sum_probs=5.2
Q ss_pred CCCCCCCC
Q 044885 107 MIPSMFKK 114 (114)
Q Consensus 107 ~~p~~~~~ 114 (114)
++||+|-|
T Consensus 24 tppp~q~k 31 (36)
T 2lug_A 24 TPPPSQGK 31 (36)
T ss_dssp CCCCCBCT
T ss_pred CCCCcccc
Confidence 57777754
No 5
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=16.73 E-value=51 Score=24.84 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCCCC
Q 044885 49 RGKLRKKYGLQGNS 62 (114)
Q Consensus 49 R~~iR~ky~I~g~~ 62 (114)
-.+||+||+|+-+-
T Consensus 194 VKQLRkrY~IpT~k 207 (260)
T 4egd_A 194 VQQLRKRYDIPTKQ 207 (260)
T ss_dssp HHHHHHHSCCCCCC
T ss_pred HHHHHHhcCCCCCC
Confidence 45899999998653
No 6
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=12.92 E-value=77 Score=21.27 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=12.7
Q ss_pred HHHhhHHHHHHHhcC
Q 044885 74 TCALCQEHAELRSRG 88 (114)
Q Consensus 74 ~Cal~Qe~rEl~~r~ 88 (114)
-|.+||+.|||+...
T Consensus 100 ~C~vC~k~rel~~kS 114 (134)
T 1zbd_B 100 LCKICLEQREVWKRS 114 (134)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred echhhHHHHHHHHhh
Confidence 578999999998774
No 7
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=12.50 E-value=94 Score=20.49 Aligned_cols=13 Identities=46% Similarity=0.521 Sum_probs=10.9
Q ss_pred hHHHHHHHHhCCC
Q 044885 47 VYRGKLRKKYGLQ 59 (114)
Q Consensus 47 ~~R~~iR~ky~I~ 59 (114)
..|.++++|||-+
T Consensus 75 ~~R~qL~~KfG~e 87 (111)
T 3k6g_A 75 DTREALVKKFGAQ 87 (111)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhH
Confidence 5799999999854
No 8
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=12.00 E-value=2.1e+02 Score=19.65 Aligned_cols=16 Identities=13% Similarity=0.206 Sum_probs=13.5
Q ss_pred HhhHHHHHHHhcCCCC
Q 044885 76 ALCQEHAELRSRGLDP 91 (114)
Q Consensus 76 al~Qe~rEl~~r~~~~ 91 (114)
.+.+.|++|+.+|+.-
T Consensus 135 ~i~~~y~~Lk~~G~~f 150 (171)
T 1juq_A 135 KIKDAYHMLKRQGIVQ 150 (171)
T ss_dssp HHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHCCCCC
Confidence 5889999999998753
No 9
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=11.13 E-value=1.5e+02 Score=22.98 Aligned_cols=22 Identities=14% Similarity=0.428 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHhCCCCCCcc
Q 044885 43 LLSCVYRGKLRKKYGLQGNSFC 64 (114)
Q Consensus 43 ~~~~~~R~~iR~ky~I~g~~~~ 64 (114)
-|.-++..++|+.||++|.++.
T Consensus 428 ~y~r~l~~~~r~~~~~~g~p~~ 449 (456)
T 4dcu_A 428 SYERFLENRIRDAFGFEGTPIK 449 (456)
T ss_dssp HHHHHHHHHHHHHHCCTTCCCE
T ss_pred HHHHHHHHHHHHhCCCCceeEE
Confidence 3555667799999999999863
No 10
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=11.08 E-value=1.3e+02 Score=17.18 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.0
Q ss_pred HHHHHHHhCCCCCC
Q 044885 49 RGKLRKKYGLQGNS 62 (114)
Q Consensus 49 R~~iR~ky~I~g~~ 62 (114)
=.++|+++||+.+.
T Consensus 27 PkeiR~~Lgi~~Gd 40 (59)
T 1yfb_A 27 PIELRRTLGIAEKD 40 (59)
T ss_dssp CHHHHHHTTCCTTC
T ss_pred CHHHHHHcCCCCCC
Confidence 35899999998654
Done!