Query 044885
Match_columns 114
No_of_seqs 113 out of 642
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 13:24:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044885.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044885hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkya3 d.52.5.1 (A:359-439) P 22.6 28 0.002 20.0 2.5 21 44-64 53-74 (81)
2 d2odgc1 a.140.1.1 (C:2-47) Inn 21.5 28 0.002 18.2 2.0 17 51-67 13-29 (46)
3 d1nexa1 a.157.1.1 (A:116-185) 10.8 64 0.0047 17.8 1.9 17 46-62 45-61 (70)
4 d2csba2 a.60.2.4 (A:294-350) T 10.0 61 0.0044 17.0 1.4 11 51-61 7-17 (57)
5 d1tjla2 g.39.1.13 (A:111-151) 9.8 59 0.0043 16.1 1.3 15 73-87 23-37 (41)
6 d1k6ya1 a.4.10.1 (A:1-46) N-te 7.9 90 0.0066 16.0 1.6 17 51-67 21-37 (46)
7 d1i5ga_ c.47.1.10 (A:) Trypare 7.9 82 0.006 18.8 1.6 22 64-86 33-59 (144)
8 d2adra2 g.37.1.1 (A:131-161) A 7.2 1.1E+02 0.0082 14.4 1.6 15 51-65 17-31 (31)
9 d2g3ra2 b.34.9.1 (A:1538-1603) 7.1 56 0.0041 17.9 0.4 16 43-58 50-65 (66)
10 d1e0ea_ a.4.10.1 (A:) N-termin 7.0 1E+02 0.0073 15.7 1.5 17 51-67 21-37 (46)
No 1
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.65 E-value=28 Score=19.95 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHH-hCCCCCCcc
Q 044885 44 LSCVYRGKLRKK-YGLQGNSFC 64 (114)
Q Consensus 44 ~~~~~R~~iR~k-y~I~g~~~~ 64 (114)
|.=.+..++|+. ||++|.++.
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi~ 74 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPIF 74 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCCE
T ss_pred HHHHHHHHHHHHhCCCCccCEE
Confidence 455677899997 999998863
No 2
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.45 E-value=28 Score=18.22 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=13.2
Q ss_pred HHHHHhCCCCCCcchhh
Q 044885 51 KLRKKYGLQGNSFCDCC 67 (114)
Q Consensus 51 ~iR~ky~I~g~~~~D~l 67 (114)
++-.+|||+-.++.|--
T Consensus 13 ~lL~~y~I~HGPvVdst 29 (46)
T d2odgc1 13 TLLRRYNIPHGPVVGST 29 (46)
T ss_dssp HHHHHTTCCCCCCCHHH
T ss_pred HHHHHhCCCCCCcccch
Confidence 45568999999988743
No 3
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.85 E-value=64 Score=17.76 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=13.2
Q ss_pred hhHHHHHHHHhCCCCCC
Q 044885 46 CVYRGKLRKKYGLQGNS 62 (114)
Q Consensus 46 ~~~R~~iR~ky~I~g~~ 62 (114)
...-.+||+.+||+.+.
T Consensus 45 gkt~eeiR~~f~I~~D~ 61 (70)
T d1nexa1 45 GRSPEEIRRTFNIVNDF 61 (70)
T ss_dssp TCCHHHHHHHHTCCCCC
T ss_pred cCCHHHHHHHhCCCCCC
Confidence 44567999999999753
No 4
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=10.01 E-value=61 Score=17.04 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=9.1
Q ss_pred HHHHHhCCCCC
Q 044885 51 KLRKKYGLQGN 61 (114)
Q Consensus 51 ~iR~ky~I~g~ 61 (114)
+++.||||+.+
T Consensus 7 klqdrygired 17 (57)
T d2csba2 7 KLQDRYGIRED 17 (57)
T ss_dssp HHHHHHCCCHH
T ss_pred ehhhhhccHHH
Confidence 68899999854
No 5
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=9.77 E-value=59 Score=16.07 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=10.3
Q ss_pred hHHHhhHHHHHHHhc
Q 044885 73 ETCALCQEHAELRSR 87 (114)
Q Consensus 73 ~~Cal~Qe~rEl~~r 87 (114)
.-|.-||+..|-+.+
T Consensus 23 ~~Cv~Cq~~~E~~~r 37 (41)
T d1tjla2 23 DLCIDCKTLAEIREK 37 (41)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 356777888887654
No 6
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.89 E-value=90 Score=15.95 Aligned_cols=17 Identities=6% Similarity=0.069 Sum_probs=11.6
Q ss_pred HHHHHhCCCCCCcchhh
Q 044885 51 KLRKKYGLQGNSFCDCC 67 (114)
Q Consensus 51 ~iR~ky~I~g~~~~D~l 67 (114)
.||.+|||+-....+.+
T Consensus 21 ~L~~~F~ip~~vAr~IV 37 (46)
T d1k6ya1 21 AMASDFNLPPVVAKEIV 37 (46)
T ss_dssp HHHHHHTCCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 68999999865444433
No 7
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}
Probab=7.86 E-value=82 Score=18.82 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=11.4
Q ss_pred chhhHHhhhhHH-----HhhHHHHHHHh
Q 044885 64 CDCCVHCFCETC-----ALCQEHAELRS 86 (114)
Q Consensus 64 ~D~l~~~~C~~C-----al~Qe~rEl~~ 86 (114)
-||. ..||.+| .|.+.++|.+.
T Consensus 33 l~Fw-AtWC~pC~~~~p~L~~l~~~~~~ 59 (144)
T d1i5ga_ 33 FYFS-ASWCPPSRAFTPQLIDFYKAHAE 59 (144)
T ss_dssp EEEE-CTTCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEE-ecCCchHhhhhHhHHHHHHHHHh
Confidence 3443 4566888 34444555543
No 8
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=7.17 E-value=1.1e+02 Score=14.35 Aligned_cols=15 Identities=7% Similarity=0.251 Sum_probs=11.4
Q ss_pred HHHHHhCCCCCCcch
Q 044885 51 KLRKKYGLQGNSFCD 65 (114)
Q Consensus 51 ~iR~ky~I~g~~~~D 65 (114)
.+|....|.+..++|
T Consensus 17 lLRH~qKlH~g~cgd 31 (31)
T d2adra2 17 LIRHAQKIHSGNLGE 31 (31)
T ss_dssp HHHHHTTTSCCSSCC
T ss_pred HHHHHHHHhcCcCCC
Confidence 367888888887776
No 9
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.10 E-value=56 Score=17.93 Aligned_cols=16 Identities=44% Similarity=0.746 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHhCC
Q 044885 43 LLSCVYRGKLRKKYGL 58 (114)
Q Consensus 43 ~~~~~~R~~iR~ky~I 58 (114)
|++.-+-.++|++||+
T Consensus 50 ilsleqgnrlreqygl 65 (66)
T d2g3ra2 50 ILSLEQGNRLREQYGL 65 (66)
T ss_dssp EBCHHHHHTTHHHHBC
T ss_pred eEEhhhhhhHHHhhCC
Confidence 4566777889999986
No 10
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=7.03 E-value=1e+02 Score=15.74 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=12.1
Q ss_pred HHHHHhCCCCCCcchhh
Q 044885 51 KLRKKYGLQGNSFCDCC 67 (114)
Q Consensus 51 ~iR~ky~I~g~~~~D~l 67 (114)
.|+.+|||+-....+.+
T Consensus 21 ~L~~~F~lp~~vAr~IV 37 (46)
T d1e0ea_ 21 ELSHKFGIPNLVARQIV 37 (46)
T ss_dssp HHHHHTCCCHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 68999999865544444
Done!