Query 044886
Match_columns 183
No_of_seqs 115 out of 1213
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:44:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575 Voltage-gated shaker-l 100.0 3.3E-42 7.1E-47 276.8 19.0 177 4-180 36-238 (336)
2 COG0667 Tas Predicted oxidored 100.0 3.6E-42 7.7E-47 279.5 19.1 164 9-172 30-219 (316)
3 COG0656 ARA1 Aldo/keto reducta 100.0 2.6E-40 5.6E-45 261.1 16.2 159 3-165 20-196 (280)
4 TIGR01293 Kv_beta voltage-depe 100.0 8.6E-40 1.9E-44 266.2 19.0 168 5-172 22-219 (317)
5 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.8E-39 3.9E-44 259.9 17.6 170 8-177 13-206 (283)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 1E-38 2.2E-43 262.7 19.4 167 5-171 36-235 (346)
7 PRK10625 tas putative aldo-ket 100.0 1.1E-37 2.3E-42 256.7 20.2 168 5-172 23-247 (346)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.3E-37 2.9E-42 249.4 20.1 164 10-173 27-213 (285)
9 PRK14863 bifunctional regulato 100.0 3.6E-38 7.7E-43 253.9 16.7 162 5-169 26-202 (292)
10 PLN02587 L-galactose dehydroge 100.0 3.7E-37 8.1E-42 250.4 18.8 162 9-170 28-216 (314)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 7.1E-37 1.5E-41 243.7 18.7 161 3-168 9-188 (267)
12 KOG1577 Aldo/keto reductase fa 100.0 1E-36 2.3E-41 241.1 15.3 159 3-166 21-215 (300)
13 PRK10376 putative oxidoreducta 100.0 4.6E-36 1E-40 241.6 19.4 161 4-164 32-218 (290)
14 COG4989 Predicted oxidoreducta 100.0 2.3E-35 5E-40 225.8 13.2 162 8-169 27-219 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 1.9E-33 4.1E-38 224.8 17.6 157 3-165 21-193 (275)
16 COG1453 Predicted oxidoreducta 100.0 1.1E-32 2.3E-37 221.3 16.4 167 4-171 26-215 (391)
17 KOG1576 Predicted oxidoreducta 100.0 7.4E-32 1.6E-36 208.3 13.8 181 1-182 44-253 (342)
18 KOG3023 Glutamate-cysteine lig 97.8 7.6E-05 1.7E-09 57.9 6.5 67 93-159 155-227 (285)
19 COG1748 LYS9 Saccharopine dehy 90.7 1.6 3.4E-05 36.9 7.9 76 10-90 77-159 (389)
20 PRK13958 N-(5'-phosphoribosyl) 87.4 2.8 6.1E-05 32.2 6.7 67 70-138 16-83 (207)
21 PRK10550 tRNA-dihydrouridine s 86.2 17 0.00037 29.7 11.5 125 10-137 73-224 (312)
22 PRK01222 N-(5'-phosphoribosyl) 83.4 4.9 0.00011 30.9 6.4 67 71-139 19-86 (210)
23 PF07555 NAGidase: beta-N-acet 82.1 9.3 0.0002 31.3 7.7 101 3-116 6-112 (306)
24 COG0135 TrpF Phosphoribosylant 80.4 7.7 0.00017 29.9 6.3 65 71-139 18-84 (208)
25 TIGR01228 hutU urocanate hydra 79.8 7 0.00015 34.0 6.4 60 72-138 196-258 (545)
26 COG0502 BioB Biotin synthase a 79.8 16 0.00036 30.2 8.4 132 9-144 84-234 (335)
27 PRK05414 urocanate hydratase; 79.5 7.8 0.00017 33.9 6.6 60 72-138 205-267 (556)
28 PF01175 Urocanase: Urocanase; 79.1 7.4 0.00016 34.0 6.4 69 57-139 187-258 (546)
29 PRK06294 coproporphyrinogen II 77.2 22 0.00048 29.7 8.8 61 56-118 165-242 (370)
30 PRK07379 coproporphyrinogen II 76.4 22 0.00047 30.1 8.5 61 56-118 177-254 (400)
31 PRK08446 coproporphyrinogen II 73.1 52 0.0011 27.2 10.5 62 56-119 160-231 (350)
32 PF03102 NeuB: NeuB family; I 72.8 21 0.00045 28.2 7.0 104 9-120 53-183 (241)
33 PRK09058 coproporphyrinogen II 72.8 23 0.0005 30.5 7.9 30 56-86 225-254 (449)
34 cd07944 DRE_TIM_HOA_like 4-hyd 72.6 47 0.001 26.5 10.8 29 4-32 12-40 (266)
35 COG1121 ZnuC ABC-type Mn/Zn tr 72.0 41 0.00089 26.8 8.6 50 77-128 156-208 (254)
36 PRK08599 coproporphyrinogen II 71.2 34 0.00073 28.6 8.5 61 56-118 162-239 (377)
37 PRK05660 HemN family oxidoredu 70.6 47 0.001 27.9 9.2 62 56-119 169-243 (378)
38 COG0635 HemN Coproporphyrinoge 70.6 38 0.00083 28.9 8.7 63 56-119 199-276 (416)
39 COG2179 Predicted hydrolase of 70.0 24 0.00052 26.3 6.3 78 5-87 42-119 (175)
40 cd03319 L-Ala-DL-Glu_epimerase 69.6 58 0.0013 26.3 11.9 144 10-165 134-292 (316)
41 PLN02363 phosphoribosylanthran 69.0 24 0.00052 28.1 6.7 75 59-139 56-131 (256)
42 PRK13803 bifunctional phosphor 68.0 23 0.0005 31.9 7.1 69 72-140 20-89 (610)
43 PRK15108 biotin synthase; Prov 67.7 62 0.0013 26.9 9.2 102 9-111 76-188 (345)
44 PRK08508 biotin synthase; Prov 67.3 63 0.0014 25.8 10.4 100 9-108 40-151 (279)
45 cd03174 DRE_TIM_metallolyase D 66.9 58 0.0013 25.3 10.4 27 6-32 13-39 (265)
46 COG2987 HutU Urocanate hydrata 66.9 18 0.0004 31.2 5.8 58 72-136 205-263 (561)
47 PRK09427 bifunctional indole-3 66.3 26 0.00057 30.3 6.9 64 72-139 274-338 (454)
48 PRK13347 coproporphyrinogen II 65.8 34 0.00073 29.5 7.5 62 56-119 214-291 (453)
49 COG2089 SpsE Sialic acid synth 65.3 79 0.0017 26.3 9.0 111 9-125 87-222 (347)
50 PF00697 PRAI: N-(5'phosphorib 63.6 23 0.0005 26.8 5.5 68 69-140 13-81 (197)
51 TIGR00538 hemN oxygen-independ 63.6 52 0.0011 28.3 8.3 62 56-119 213-290 (455)
52 PRK05628 coproporphyrinogen II 63.3 88 0.0019 26.1 10.2 29 56-85 170-198 (375)
53 PRK05799 coproporphyrinogen II 63.2 65 0.0014 26.8 8.6 29 56-85 161-189 (374)
54 PTZ00413 lipoate synthase; Pro 62.5 81 0.0018 26.8 8.8 154 7-163 175-373 (398)
55 COG4464 CapC Capsular polysacc 62.3 43 0.00094 26.2 6.6 41 8-48 16-59 (254)
56 PRK06256 biotin synthase; Vali 61.8 88 0.0019 25.6 9.0 100 9-109 91-202 (336)
57 PRK08208 coproporphyrinogen II 61.0 1.1E+02 0.0023 26.2 10.2 62 56-119 203-275 (430)
58 COG2256 MGS1 ATPase related to 60.6 83 0.0018 27.0 8.5 95 16-119 37-143 (436)
59 PLN02746 hydroxymethylglutaryl 58.9 1.1E+02 0.0023 25.6 10.4 157 5-164 61-278 (347)
60 PF00682 HMGL-like: HMGL-like 58.9 81 0.0017 24.2 12.4 107 6-115 8-129 (237)
61 cd07939 DRE_TIM_NifV Streptomy 58.7 88 0.0019 24.6 16.8 159 6-171 14-226 (259)
62 PRK09389 (R)-citramalate synth 58.1 1.3E+02 0.0028 26.4 9.7 30 4-33 16-45 (488)
63 PRK13015 3-dehydroquinate dehy 58.0 70 0.0015 23.2 6.8 81 57-144 25-107 (146)
64 cd00466 DHQase_II Dehydroquina 58.0 53 0.0012 23.7 6.1 79 57-144 23-105 (140)
65 cd00405 PRAI Phosphoribosylant 57.9 29 0.00062 26.2 5.2 41 78-122 73-113 (203)
66 cd05007 SIS_Etherase N-acetylm 57.3 96 0.0021 24.6 10.2 109 13-128 37-165 (257)
67 cd07948 DRE_TIM_HCS Saccharomy 56.4 1E+02 0.0022 24.6 16.6 28 6-33 16-43 (262)
68 PF01118 Semialdhyde_dh: Semia 56.2 18 0.00039 24.8 3.5 28 9-36 74-101 (121)
69 PLN02389 biotin synthase 55.0 1.3E+02 0.0028 25.4 9.5 99 9-108 116-227 (379)
70 PF10171 DUF2366: Uncharacteri 54.9 32 0.00069 25.8 4.8 40 79-118 78-117 (173)
71 PF07021 MetW: Methionine bios 54.3 96 0.0021 23.7 7.9 142 16-165 5-172 (193)
72 PRK12570 N-acetylmuramic acid- 54.3 1.2E+02 0.0025 24.7 10.0 58 67-127 116-173 (296)
73 cd03174 DRE_TIM_metallolyase D 53.3 62 0.0013 25.1 6.6 83 57-141 15-98 (265)
74 TIGR01088 aroQ 3-dehydroquinat 52.4 74 0.0016 23.0 6.1 79 57-144 23-105 (141)
75 PRK07094 biotin synthase; Prov 51.8 1.3E+02 0.0028 24.4 9.8 115 9-127 70-202 (323)
76 cd07944 DRE_TIM_HOA_like 4-hyd 51.8 78 0.0017 25.2 6.9 60 12-75 195-260 (266)
77 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.4 1.3E+02 0.0028 24.0 13.4 29 5-33 14-42 (275)
78 PF00072 Response_reg: Respons 50.2 67 0.0015 20.7 5.8 59 77-138 42-102 (112)
79 PRK14461 ribosomal RNA large s 50.0 1.6E+02 0.0034 24.9 9.3 112 56-169 207-364 (371)
80 TIGR02351 thiH thiazole biosyn 49.8 1.5E+02 0.0033 24.7 9.2 93 9-108 103-215 (366)
81 PRK14042 pyruvate carboxylase 48.6 2.1E+02 0.0045 25.9 12.2 108 5-118 90-206 (596)
82 PRK05395 3-dehydroquinate dehy 48.5 80 0.0017 23.0 5.8 79 57-144 25-107 (146)
83 COG3693 XynA Beta-1,4-xylanase 47.4 1.4E+02 0.003 24.9 7.6 98 9-117 118-228 (345)
84 KOG0173 20S proteasome, regula 46.9 19 0.0004 28.6 2.5 23 4-26 178-200 (271)
85 PRK09249 coproporphyrinogen II 46.6 1.1E+02 0.0024 26.3 7.6 28 56-84 213-240 (453)
86 cd07943 DRE_TIM_HOA 4-hydroxy- 46.4 1.2E+02 0.0026 23.9 7.2 56 12-70 197-258 (263)
87 PRK14040 oxaloacetate decarbox 45.9 2.3E+02 0.005 25.6 13.2 100 5-109 20-139 (593)
88 PLN02943 aminoacyl-tRNA ligase 45.4 1.3E+02 0.0029 28.7 8.3 99 17-119 117-231 (958)
89 KOG0059 Lipid exporter ABCA1 a 45.3 2E+02 0.0044 27.2 9.5 70 57-128 669-767 (885)
90 PRK08195 4-hyroxy-2-oxovalerat 45.2 1.8E+02 0.0038 24.1 14.8 29 4-32 17-45 (337)
91 PRK13361 molybdenum cofactor b 45.1 1.7E+02 0.0037 23.9 13.6 127 8-141 44-194 (329)
92 PF01220 DHquinase_II: Dehydro 44.7 75 0.0016 22.9 5.2 81 57-144 24-106 (140)
93 TIGR00433 bioB biotin syntheta 44.7 1.6E+02 0.0034 23.4 9.6 117 9-126 62-193 (296)
94 cd07945 DRE_TIM_CMS Leptospira 44.1 1.7E+02 0.0036 23.5 9.7 119 6-127 13-154 (280)
95 PRK06582 coproporphyrinogen II 43.9 1.5E+02 0.0033 25.0 7.8 61 56-118 172-249 (390)
96 PF01207 Dus: Dihydrouridine s 43.4 1.6E+02 0.0035 23.9 7.7 124 10-137 64-213 (309)
97 PF08671 SinI: Anti-repressor 43.2 31 0.00068 17.9 2.3 16 12-27 3-18 (30)
98 PRK11267 biopolymer transport 43.0 96 0.0021 22.0 5.7 54 58-116 81-134 (141)
99 TIGR02370 pyl_corrinoid methyl 42.8 1.4E+02 0.0031 22.4 7.8 133 9-144 9-149 (197)
100 cd00308 enolase_like Enolase-s 42.4 1.5E+02 0.0033 22.6 7.6 83 79-165 120-209 (229)
101 PRK11024 colicin uptake protei 42.2 91 0.002 22.1 5.4 53 59-116 86-138 (141)
102 PRK14460 ribosomal RNA large s 42.0 2.1E+02 0.0045 23.9 11.0 164 3-168 124-337 (354)
103 PRK08609 hypothetical protein; 41.9 2.6E+02 0.0056 25.0 11.1 99 14-116 351-467 (570)
104 cd07943 DRE_TIM_HOA 4-hydroxy- 41.0 1.8E+02 0.0038 22.9 15.3 29 4-32 14-42 (263)
105 PRK09462 fur ferric uptake reg 40.5 47 0.001 23.8 3.7 27 90-116 49-75 (148)
106 PRK05441 murQ N-acetylmuramic 40.3 2E+02 0.0043 23.3 10.0 61 65-128 118-178 (299)
107 TIGR00689 rpiB_lacA_lacB sugar 40.3 1.4E+02 0.0031 21.6 8.7 95 57-159 6-105 (144)
108 TIGR00274 N-acetylmuramic acid 40.2 2E+02 0.0043 23.3 9.7 57 69-128 117-173 (291)
109 PRK00730 rnpA ribonuclease P; 40.1 1.4E+02 0.003 21.5 6.4 53 54-106 56-110 (138)
110 PRK05588 histidinol-phosphatas 39.3 45 0.00098 26.1 3.8 99 11-113 15-143 (255)
111 cd00452 KDPG_aldolase KDPG and 39.1 1.6E+02 0.0035 21.9 9.5 107 9-136 13-123 (190)
112 COG0135 TrpF Phosphoribosylant 38.8 52 0.0011 25.4 3.8 91 10-117 11-110 (208)
113 KOG4518 Hydroxypyruvate isomer 38.6 1.9E+02 0.004 22.5 7.6 128 14-144 18-184 (264)
114 PRK09061 D-glutamate deacylase 38.6 2.7E+02 0.0059 24.4 9.0 103 13-115 170-283 (509)
115 cd00668 Ile_Leu_Val_MetRS_core 38.6 59 0.0013 26.3 4.4 48 60-111 81-131 (312)
116 COG0757 AroQ 3-dehydroquinate 38.0 1.5E+02 0.0034 21.4 7.0 82 57-145 24-107 (146)
117 cd04740 DHOD_1B_like Dihydroor 37.6 2.1E+02 0.0046 22.8 12.2 127 10-142 100-265 (296)
118 COG5016 Pyruvate/oxaloacetate 37.4 2.7E+02 0.0059 24.1 10.0 101 9-117 95-207 (472)
119 TIGR00737 nifR3_yhdG putative 37.4 2.2E+02 0.0049 23.1 11.6 127 10-141 73-226 (319)
120 cd00814 MetRS_core catalytic c 37.3 59 0.0013 26.5 4.2 50 57-109 65-114 (319)
121 PF00388 PI-PLC-X: Phosphatidy 36.8 30 0.00064 24.6 2.2 21 16-36 30-50 (146)
122 TIGR00035 asp_race aspartate r 36.7 1.9E+02 0.0042 22.2 8.4 62 59-121 15-88 (229)
123 cd07938 DRE_TIM_HMGL 3-hydroxy 36.7 2.2E+02 0.0048 22.7 10.3 27 6-32 14-40 (274)
124 COG0419 SbcC ATPase involved i 36.4 1E+02 0.0023 29.1 6.2 57 67-125 828-889 (908)
125 PRK10415 tRNA-dihydrouridine s 36.4 2.4E+02 0.0052 23.1 11.2 124 10-137 75-224 (321)
126 TIGR00618 sbcc exonuclease Sbc 35.4 2.3E+02 0.0051 27.3 8.4 64 62-127 956-1028(1042)
127 TIGR00048 radical SAM enzyme, 35.0 2.7E+02 0.0058 23.3 9.0 90 81-170 218-346 (355)
128 PRK05571 ribose-5-phosphate is 35.0 1.8E+02 0.0038 21.2 9.1 79 57-136 8-87 (148)
129 PRK10508 hypothetical protein; 34.9 67 0.0014 26.5 4.2 43 57-104 285-327 (333)
130 COG3877 Uncharacterized protei 34.8 1.5E+02 0.0033 20.3 5.5 59 42-109 48-111 (122)
131 COG2242 CobL Precorrin-6B meth 34.2 2.1E+02 0.0045 21.7 11.2 130 6-142 14-165 (187)
132 PRK12581 oxaloacetate decarbox 34.2 3.2E+02 0.007 23.9 12.9 104 10-118 103-215 (468)
133 KOG1892 Actin filament-binding 33.7 31 0.00067 32.9 2.2 34 61-94 7-40 (1629)
134 PRK09240 thiH thiamine biosynt 33.6 2.9E+02 0.0062 23.2 11.1 93 9-108 104-216 (371)
135 PF02426 MIase: Muconolactone 33.6 1.2E+02 0.0027 20.1 4.5 48 97-144 28-87 (91)
136 PRK05904 coproporphyrinogen II 33.3 2.8E+02 0.0062 23.0 8.7 29 56-85 165-193 (353)
137 COG1140 NarY Nitrate reductase 32.9 17 0.00036 30.8 0.4 22 107-128 264-285 (513)
138 cd00405 PRAI Phosphoribosylant 32.8 1.9E+02 0.004 21.7 6.1 66 72-139 16-82 (203)
139 PF02629 CoA_binding: CoA bind 32.5 61 0.0013 21.2 3.0 21 9-29 70-90 (96)
140 PF11432 DUF3197: Protein of u 32.4 41 0.0009 23.0 2.1 31 1-32 50-80 (113)
141 smart00148 PLCXc Phospholipase 32.3 41 0.0009 23.8 2.3 19 15-33 31-49 (135)
142 cd03316 MR_like Mandelate race 32.3 2.8E+02 0.0061 22.7 11.3 141 10-160 139-299 (357)
143 TIGR03217 4OH_2_O_val_ald 4-hy 32.3 2.4E+02 0.0052 23.3 7.0 58 14-74 202-265 (333)
144 TIGR03278 methan_mark_10 putat 32.2 3.2E+02 0.007 23.3 10.1 108 56-165 52-179 (404)
145 cd01297 D-aminoacylase D-amino 31.8 3.1E+02 0.0068 23.1 11.2 113 12-128 167-298 (415)
146 PRK10997 yieM hypothetical pro 31.3 2.1E+02 0.0045 25.2 6.7 67 62-128 398-469 (487)
147 PRK11893 methionyl-tRNA synthe 31.2 89 0.0019 27.1 4.6 91 13-112 25-118 (511)
148 PF04481 DUF561: Protein of un 31.2 2.6E+02 0.0057 22.0 10.0 25 9-33 24-48 (242)
149 COG1131 CcmA ABC-type multidru 31.0 2E+02 0.0043 23.2 6.3 62 63-127 141-205 (293)
150 PF15513 DUF4651: Domain of un 30.8 1.2E+02 0.0025 18.7 3.7 30 59-90 3-32 (62)
151 PRK11858 aksA trans-homoaconit 30.8 3.2E+02 0.007 22.9 14.8 44 5-49 19-62 (378)
152 PF09639 YjcQ: YjcQ protein; 30.7 40 0.00087 22.0 1.9 24 94-117 25-48 (88)
153 PF01475 FUR: Ferric uptake re 30.6 65 0.0014 21.9 3.0 52 64-116 10-65 (120)
154 TIGR01428 HAD_type_II 2-haloal 30.5 90 0.0019 23.0 4.0 64 63-128 61-128 (198)
155 PF12728 HTH_17: Helix-turn-he 30.2 1.1E+02 0.0023 17.2 3.8 32 97-128 15-49 (51)
156 COG3113 Predicted NTP binding 29.7 1E+02 0.0023 20.8 3.7 62 63-128 28-89 (99)
157 PF04967 HTH_10: HTH DNA bindi 29.7 1.3E+02 0.0027 17.8 5.7 45 15-73 6-50 (53)
158 PRK14457 ribosomal RNA large s 29.6 3.3E+02 0.0072 22.7 9.7 109 62-170 195-343 (345)
159 PRK05283 deoxyribose-phosphate 29.5 3E+02 0.0064 22.0 7.2 72 9-80 143-227 (257)
160 PRK11858 aksA trans-homoaconit 29.5 3.1E+02 0.0067 23.0 7.4 61 14-76 202-268 (378)
161 cd00818 IleRS_core catalytic c 29.3 71 0.0015 26.3 3.5 46 62-110 88-135 (338)
162 COG0646 MetH Methionine syntha 29.2 1.3E+02 0.0028 24.7 4.8 37 92-128 271-308 (311)
163 PF10941 DUF2620: Protein of u 29.1 69 0.0015 22.3 2.8 24 98-122 85-108 (117)
164 cd03770 SR_TndX_transposase Se 28.6 1.3E+02 0.0028 21.2 4.4 52 64-115 54-106 (140)
165 COG0525 ValS Valyl-tRNA synthe 28.6 5.3E+02 0.011 24.7 9.7 105 11-125 56-182 (877)
166 TIGR00422 valS valyl-tRNA synt 28.4 3.2E+02 0.0068 25.8 7.9 53 63-119 120-176 (861)
167 TIGR02090 LEU1_arch isopropylm 28.3 3.2E+02 0.0069 22.8 7.2 63 14-77 198-265 (363)
168 cd00739 DHPS DHPS subgroup of 28.2 3E+02 0.0066 21.8 8.5 99 58-160 21-128 (257)
169 PF10007 DUF2250: Uncharacteri 28.2 74 0.0016 21.2 2.8 50 64-116 9-58 (92)
170 PF06819 Arc_PepC: Archaeal Pe 28.2 1.7E+02 0.0036 20.2 4.5 53 58-110 53-105 (110)
171 TIGR03471 HpnJ hopanoid biosyn 28.1 3.9E+02 0.0085 23.0 9.2 132 9-145 227-379 (472)
172 cd04447 DEP_BRCC3 DEP (Disheve 28.1 90 0.0019 20.8 3.1 24 4-27 48-71 (92)
173 cd03323 D-glucarate_dehydratas 28.0 3.7E+02 0.008 22.7 12.3 142 5-161 163-321 (395)
174 PRK08084 DNA replication initi 27.8 2.8E+02 0.006 21.4 6.5 109 11-122 29-145 (235)
175 PF09862 DUF2089: Protein of u 27.6 2.1E+02 0.0046 19.8 5.9 35 42-76 40-79 (113)
176 TIGR02660 nifV_homocitr homoci 27.5 3.6E+02 0.0079 22.4 17.1 162 5-170 16-228 (365)
177 COG3589 Uncharacterized conser 27.1 1.3E+02 0.0028 25.1 4.5 42 5-46 9-50 (360)
178 COG4152 ABC-type uncharacteriz 27.1 3.4E+02 0.0074 22.0 9.0 70 57-128 101-199 (300)
179 PRK12558 glutamyl-tRNA synthet 27.0 1.3E+02 0.0028 26.1 4.7 61 56-124 46-106 (445)
180 TIGR03858 LLM_2I7G probable ox 27.0 2.1E+02 0.0045 23.5 5.9 20 58-77 286-305 (337)
181 PRK08621 galactose-6-phosphate 26.7 2.5E+02 0.0054 20.3 8.3 76 57-136 8-84 (142)
182 PRK14468 ribosomal RNA large s 26.7 3.7E+02 0.0081 22.3 9.1 74 56-129 119-200 (343)
183 COG3607 Predicted lactoylgluta 26.7 79 0.0017 22.4 2.8 28 9-36 80-107 (133)
184 cd00137 PI-PLCc Catalytic doma 26.2 54 0.0012 26.3 2.2 17 16-32 38-54 (274)
185 cd03322 rpsA The starvation se 26.1 3.5E+02 0.0077 22.4 7.2 65 97-161 203-274 (361)
186 COG1180 PflA Pyruvate-formate 26.1 3.3E+02 0.0072 21.5 9.6 36 93-128 158-198 (260)
187 PF09999 DUF2240: Uncharacteri 26.1 72 0.0015 23.1 2.6 21 9-29 34-54 (144)
188 TIGR03569 NeuB_NnaB N-acetylne 26.0 3.8E+02 0.0083 22.2 11.6 127 9-140 73-226 (329)
189 PF14615 Rsa3: Ribosome-assemb 26.0 51 0.0011 19.0 1.5 19 12-30 29-47 (47)
190 cd05006 SIS_GmhA Phosphoheptos 25.9 1.3E+02 0.0029 21.9 4.2 48 77-127 100-147 (177)
191 cd00812 LeuRS_core catalytic c 25.9 1.1E+02 0.0024 24.8 4.1 51 59-110 67-117 (314)
192 PRK00260 cysS cysteinyl-tRNA s 25.7 1.9E+02 0.0042 25.0 5.6 90 14-111 47-137 (463)
193 TIGR02534 mucon_cyclo muconate 25.7 2.2E+02 0.0049 23.6 5.9 68 97-164 227-301 (368)
194 TIGR01118 lacA galactose-6-pho 25.6 2.6E+02 0.0057 20.1 8.5 77 56-136 7-84 (141)
195 COG1015 DeoB Phosphopentomutas 25.6 3.1E+02 0.0066 23.4 6.4 50 27-90 287-339 (397)
196 PF01890 CbiG_C: Cobalamin syn 25.2 2.1E+02 0.0046 19.8 4.8 63 57-126 11-73 (121)
197 PF01978 TrmB: Sugar-specific 25.1 1.3E+02 0.0029 18.0 3.5 23 92-114 35-57 (68)
198 cd07940 DRE_TIM_IPMS 2-isoprop 25.0 3.4E+02 0.0075 21.3 16.8 29 6-34 14-42 (268)
199 PRK08195 4-hyroxy-2-oxovalerat 24.8 4E+02 0.0087 22.0 7.2 60 13-75 202-267 (337)
200 PLN03233 putative glutamate-tR 24.8 2.1E+02 0.0046 25.4 5.7 62 56-125 55-116 (523)
201 TIGR02660 nifV_homocitr homoci 24.8 4E+02 0.0086 22.2 7.2 61 13-75 198-264 (365)
202 cd04438 DEP_dishevelled DEP (D 24.8 38 0.00083 22.0 0.9 22 91-112 47-68 (84)
203 COG0076 GadB Glutamate decarbo 24.7 4.5E+02 0.0097 22.9 7.7 108 6-116 70-219 (460)
204 COG0084 TatD Mg-dependent DNas 24.6 2.2E+02 0.0047 22.7 5.3 40 96-137 160-203 (256)
205 KOG0081 GTPase Rab27, small G 24.6 1.4E+02 0.0031 22.3 3.9 19 18-36 148-166 (219)
206 COG3413 Predicted DNA binding 24.5 2.7E+02 0.0059 21.1 5.8 51 9-74 156-206 (215)
207 COG4626 Phage terminase-like p 24.4 3.8E+02 0.0082 24.0 7.1 46 91-136 410-455 (546)
208 KOG2100 Dipeptidyl aminopeptid 24.3 2.2E+02 0.0048 26.5 6.0 101 4-109 583-714 (755)
209 TIGR01120 rpiB ribose 5-phosph 24.2 2.8E+02 0.0061 20.0 8.9 95 57-159 7-106 (143)
210 PF09012 FeoC: FeoC like trans 24.0 99 0.0021 18.9 2.7 26 92-117 27-52 (69)
211 TIGR02804 ExbD_2 TonB system t 23.9 2.4E+02 0.0053 19.2 5.8 30 85-115 89-118 (121)
212 cd02930 DCR_FMN 2,4-dienoyl-Co 23.9 2.3E+02 0.0049 23.5 5.6 70 66-136 228-305 (353)
213 PRK14454 ribosomal RNA large s 23.9 4.2E+02 0.0092 22.0 9.0 85 57-142 128-218 (342)
214 PF00491 Arginase: Arginase fa 23.9 3.1E+02 0.0067 21.6 6.2 54 65-119 186-255 (277)
215 cd03318 MLE Muconate Lactonizi 23.8 3.2E+02 0.0068 22.6 6.5 68 96-163 227-301 (365)
216 PRK12330 oxaloacetate decarbox 23.7 5.2E+02 0.011 22.9 11.3 109 5-118 91-209 (499)
217 TIGR03597 GTPase_YqeH ribosome 23.7 4.3E+02 0.0093 22.0 8.2 64 58-122 107-170 (360)
218 TIGR00398 metG methionyl-tRNA 23.6 1.3E+02 0.0029 26.3 4.4 89 13-110 23-114 (530)
219 COG2022 ThiG Uncharacterized e 23.5 3.8E+02 0.0083 21.3 6.5 78 57-136 79-157 (262)
220 PRK00507 deoxyribose-phosphate 23.4 3.5E+02 0.0077 20.9 7.0 28 9-36 133-160 (221)
221 PRK07027 cobalamin biosynthesi 23.4 1.8E+02 0.004 20.2 4.3 62 57-125 13-74 (126)
222 PRK10200 putative racemase; Pr 23.4 3.5E+02 0.0077 20.9 8.0 63 59-122 15-89 (230)
223 PF08679 DsrD: Dissimilatory s 23.3 1.7E+02 0.0037 18.2 3.5 29 88-116 29-57 (67)
224 cd07153 Fur_like Ferric uptake 23.1 1.5E+02 0.0034 19.7 3.8 26 91-116 33-58 (116)
225 PRK14457 ribosomal RNA large s 23.0 4.5E+02 0.0097 21.9 9.4 85 57-142 128-222 (345)
226 cd00671 ArgRS_core catalytic c 23.0 2E+02 0.0044 21.8 4.8 49 57-110 64-112 (212)
227 KOG0077 Vesicle coat complex C 22.9 1.4E+02 0.003 22.5 3.6 50 93-142 7-56 (193)
228 cd04449 DEP_DEPDC5-like DEP (D 22.8 32 0.0007 22.2 0.3 23 91-113 47-69 (83)
229 TIGR00126 deoC deoxyribose-pho 22.8 3.6E+02 0.0077 20.7 8.6 70 9-78 129-205 (211)
230 TIGR02384 RelB_DinJ addiction 22.8 96 0.0021 20.0 2.5 46 60-105 10-65 (83)
231 COG4555 NatA ABC-type Na+ tran 22.7 3.2E+02 0.0069 21.5 5.6 49 78-128 151-202 (245)
232 smart00671 SEL1 Sel1-like repe 22.7 1.2E+02 0.0025 15.1 2.8 20 6-25 16-35 (36)
233 cd09287 GluRS_non_core catalyt 22.6 2.8E+02 0.0062 21.8 5.6 47 59-110 50-96 (240)
234 PF06626 DUF1152: Protein of u 22.3 4.4E+02 0.0095 21.6 9.2 52 31-82 66-124 (297)
235 PF02801 Ketoacyl-synt_C: Beta 22.3 1.5E+02 0.0033 20.0 3.7 53 56-108 20-74 (119)
236 cd02933 OYE_like_FMN Old yello 22.2 4E+02 0.0086 22.0 6.7 103 7-116 140-262 (338)
237 PRK10246 exonuclease subunit S 22.2 2.1E+02 0.0045 27.7 5.6 56 63-121 956-1019(1047)
238 COG0279 GmhA Phosphoheptose is 22.1 3.5E+02 0.0075 20.3 9.9 110 12-128 28-156 (176)
239 cd00338 Ser_Recombinase Serine 22.1 2.1E+02 0.0045 19.4 4.4 51 64-115 51-102 (137)
240 PHA01351 putative minor struct 21.6 33 0.00071 31.5 0.1 71 12-86 366-449 (1070)
241 TIGR01290 nifB nitrogenase cof 21.6 5.3E+02 0.012 22.2 8.2 84 56-142 58-145 (442)
242 PRK14536 cysS cysteinyl-tRNA s 21.5 2.9E+02 0.0062 24.4 5.9 91 13-112 46-148 (490)
243 PRK07994 DNA polymerase III su 21.4 4.6E+02 0.01 24.0 7.3 80 60-145 101-182 (647)
244 TIGR03699 mena_SCO4550 menaqui 21.4 4.5E+02 0.0099 21.4 12.3 103 9-111 72-198 (340)
245 PF13602 ADH_zinc_N_2: Zinc-bi 21.4 83 0.0018 21.2 2.2 36 93-128 80-115 (127)
246 PF14177 YkyB: YkyB-like prote 21.3 93 0.002 22.3 2.3 18 98-115 31-48 (140)
247 PRK13537 nodulation ABC transp 21.3 3.6E+02 0.0078 21.7 6.2 49 78-128 156-207 (306)
248 PRK14463 ribosomal RNA large s 21.2 4.9E+02 0.011 21.7 9.0 69 57-127 130-203 (349)
249 PF13653 GDPD_2: Glycerophosph 21.2 90 0.002 16.1 1.7 17 15-31 10-26 (30)
250 PRK12613 galactose-6-phosphate 21.1 3.3E+02 0.0071 19.6 8.0 93 56-159 7-104 (141)
251 cd00807 GlnRS_core catalytic c 21.0 3.7E+02 0.0081 21.2 5.9 51 56-111 45-95 (238)
252 COG0735 Fur Fe2+/Zn2+ uptake r 20.9 1.6E+02 0.0035 21.0 3.7 28 89-116 51-78 (145)
253 PRK12268 methionyl-tRNA synthe 20.7 1.6E+02 0.0035 26.0 4.3 50 58-110 70-119 (556)
254 TIGR01928 menC_lowGC/arch o-su 20.7 4.7E+02 0.01 21.3 13.4 142 10-165 132-287 (324)
255 cd03315 MLE_like Muconate lact 20.7 4.2E+02 0.009 20.7 14.3 145 10-165 85-244 (265)
256 KOG1579 Homocysteine S-methylt 20.6 4.9E+02 0.011 21.5 9.6 78 11-88 52-171 (317)
257 TIGR00126 deoC deoxyribose-pho 20.6 4E+02 0.0087 20.5 8.5 134 7-146 13-163 (211)
258 PRK12323 DNA polymerase III su 20.5 3.7E+02 0.0081 24.8 6.5 67 59-127 105-173 (700)
259 PRK13796 GTPase YqeH; Provisio 20.3 5.1E+02 0.011 21.6 11.3 115 8-125 53-179 (365)
260 TIGR00435 cysS cysteinyl-tRNA 20.2 3E+02 0.0065 23.9 5.7 89 13-111 44-135 (465)
No 1
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=3.3e-42 Score=276.78 Aligned_cols=177 Identities=40% Similarity=0.556 Sum_probs=159.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCC----------CC--------CCCCCHHHHHH
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDG----------KY--------SYCGDPAYLRA 65 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~----------k~--------~~~~~~~~i~~ 65 (183)
+||+..+++++++++.+|+++|+|+||||++||+|.||..+|++|++.. |. ....+...+.+
T Consensus 36 ~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~ 115 (336)
T KOG1575|consen 36 TFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFDYGGETPRGLSRKHIIE 115 (336)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEeccCCCcCCCCCcHHHHHH
Confidence 5677679999999999999999999999999999999999999998631 21 23557788999
Q ss_pred HHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCC--eeEEeeecCcccC
Q 044886 66 ACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHP--ITVVRLEWSLRSR 143 (183)
Q Consensus 66 ~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~--~~~~q~~~~~~~~ 143 (183)
.++.|+++||++|||+|++||+|+..++++++++|.+++++|||++||+|++++++++++....+ +.++|++||++.+
T Consensus 116 ~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~R 195 (336)
T KOG1575|consen 116 GVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSR 195 (336)
T ss_pred HHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999866 9999999999999
Q ss_pred CcHH-HH-----hcCCeEEEeccCCccccCCCCCCCCCCCCCC
Q 044886 144 DVKE-EM-----ELGIGIVAYNLLECEFLSSGPKLIHLFATKG 180 (183)
Q Consensus 144 ~~~~-~~-----~~~i~v~a~~~l~~G~l~~~~~~~~~~~~~~ 180 (183)
+.+. ++ +.||++++|+||++|+|++|+......+.++
T Consensus 196 d~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~ 238 (336)
T KOG1575|consen 196 DKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGD 238 (336)
T ss_pred chhhhhHHHHHHHcCcceEEecccccceeccCccccccccccc
Confidence 9766 45 9999999999999999999998765555443
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.6e-42 Score=279.47 Aligned_cols=164 Identities=40% Similarity=0.594 Sum_probs=149.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC---------CCC--C---------CCCCHHHHHHHHH
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED---------GKY--S---------YCGDPAYLRAACE 68 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~---------~k~--~---------~~~~~~~i~~~~~ 68 (183)
.+.+++.++|++|+++|||+||||+.||.|.||+++|++|+.. +|. . ...+++.|+++++
T Consensus 30 ~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~ 109 (316)
T COG0667 30 EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVE 109 (316)
T ss_pred hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHH
Confidence 3455777899999999999999999999999999999999853 221 1 3459999999999
Q ss_pred HHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc-CCeeEEeeecCcccCCcHH
Q 044886 69 ASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI-HPITVVRLEWSLRSRDVKE 147 (183)
Q Consensus 69 ~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~~~ 147 (183)
.||+||||||||+|++||+|+..+.++++++|.+|+++||||++|+||+++++++++++. .+++++|.+||+++++.+.
T Consensus 110 ~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~ 189 (316)
T COG0667 110 ASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEK 189 (316)
T ss_pred HHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999999 6999999999999987655
Q ss_pred HH-----hcCCeEEEeccCCccccCCCCCC
Q 044886 148 EM-----ELGIGIVAYNLLECEFLSSGPKL 172 (183)
Q Consensus 148 ~~-----~~~i~v~a~~~l~~G~l~~~~~~ 172 (183)
++ +.||++++|+||++|+|++|+..
T Consensus 190 ~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 190 ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 44 99999999999999999999976
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=2.6e-40 Score=261.12 Aligned_cols=159 Identities=29% Similarity=0.343 Sum_probs=140.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCC----------C-CCCCCCHHHHHHHHHHHH
Q 044886 3 AFYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDG----------K-YSYCGDPAYLRAACEASL 71 (183)
Q Consensus 3 ~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~----------k-~~~~~~~~~i~~~~~~sL 71 (183)
|+|.-. +.+.+.+.|++|++.|+|+||||..|| ||..+|+++++.+ | |...++++.+.+++++||
T Consensus 20 Gt~~~~-~~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~ReelFittKvw~~~~~~~~~~~a~e~Sl 95 (280)
T COG0656 20 GTWQIG-DDEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREELFITTKVWPSDLGYDETLKALEASL 95 (280)
T ss_pred EeeecC-CchhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHeEEEeecCCccCCcchHHHHHHHHH
Confidence 667542 233389999999999999999999999 9999999999742 4 555778999999999999
Q ss_pred HHcCCCCcceEEeccCCCC--CCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc--CCeeEEeeecCcccCCcHH
Q 044886 72 KRLDVDCIDLYDQHRIDTK--VPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI--HPITVVRLEWSLRSRDVKE 147 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~ 147 (183)
++||+||+|+|+||||.+. ..+.++|++|++++++||||+||||||+.++++++++. ..|+++|++||++.++.+.
T Consensus 96 ~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~el 175 (280)
T COG0656 96 KRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPEL 175 (280)
T ss_pred HHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcHHH
Confidence 9999999999999999763 33789999999999999999999999999999999887 5599999999999999876
Q ss_pred -HH--hcCCeEEEeccCCccc
Q 044886 148 -EM--ELGIGIVAYNLLECEF 165 (183)
Q Consensus 148 -~~--~~~i~v~a~~~l~~G~ 165 (183)
.+ ++||.++||+||+.|.
T Consensus 176 ~~~~~~~gI~v~AysPL~~g~ 196 (280)
T COG0656 176 LPFCQRHGIAVEAYSPLAKGG 196 (280)
T ss_pred HHHHHHcCCEEEEECCccccc
Confidence 66 9999999999999655
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=8.6e-40 Score=266.24 Aligned_cols=168 Identities=22% Similarity=0.367 Sum_probs=147.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC----------CCCC--------CCCCHHHHHHH
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED----------GKYS--------YCGDPAYLRAA 66 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~----------~k~~--------~~~~~~~i~~~ 66 (183)
||++.+.+++.++|++|+++|||+||||+.||.|.||+.+|++|+.. +|.. ...+++.++++
T Consensus 22 ~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~ 101 (317)
T TIGR01293 22 FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTKIFWGGKAETERGLSRKHIIEG 101 (317)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEeeeccCCCCCCCCCCCHHHHHHH
Confidence 34457889999999999999999999999999999999999999731 3421 13578999999
Q ss_pred HHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc------CCeeEEeeecCc
Q 044886 67 CEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI------HPITVVRLEWSL 140 (183)
Q Consensus 67 ~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~------~~~~~~q~~~~~ 140 (183)
+++||++||+||||+|++|||++..+++++|++|++|+++||||+||+|||++++++++... .+++++|++||+
T Consensus 102 ~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l 181 (317)
T TIGR01293 102 LKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHM 181 (317)
T ss_pred HHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccCh
Confidence 99999999999999999999998888999999999999999999999999999988776543 478899999999
Q ss_pred ccCCc-HHHH-----hcCCeEEEeccCCccccCCCCCC
Q 044886 141 RSRDV-KEEM-----ELGIGIVAYNLLECEFLSSGPKL 172 (183)
Q Consensus 141 ~~~~~-~~~~-----~~~i~v~a~~~l~~G~l~~~~~~ 172 (183)
++++. +..+ ++||++++|+||++|+|++++..
T Consensus 182 ~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~ 219 (317)
T TIGR01293 182 FQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDS 219 (317)
T ss_pred HhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCC
Confidence 99874 3233 89999999999999999998753
No 5
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.8e-39 Score=259.90 Aligned_cols=170 Identities=32% Similarity=0.423 Sum_probs=146.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC----------CCC------CCCCCHHHHHHHHHHHH
Q 044886 8 SKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED----------GKY------SYCGDPAYLRAACEASL 71 (183)
Q Consensus 8 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~----------~k~------~~~~~~~~i~~~~~~sL 71 (183)
.++++++.++++.|++.|||+||||+.||.|.+|..+|++|++. +|. ....+++.+++++++||
T Consensus 13 ~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL 92 (283)
T PF00248_consen 13 RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSL 92 (283)
T ss_dssp TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999889999999999971 233 46889999999999999
Q ss_pred HHcCCCCcceEEeccCCCCCC-HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH--hhcCCeeEEeeecCcccCCcHHH
Q 044886 72 KRLDVDCIDLYDQHRIDTKVP-IEVTIGELKRLVEEGKIKHIDLSEAFASTIRRA--HTIHPITVVRLEWSLRSRDVKEE 148 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~--~~~~~~~~~q~~~~~~~~~~~~~ 148 (183)
++||+||+|+|++|+|+.... ..++|++|++|+++|+||+||+|||+++.++++ ....+|+++|++||++++....+
T Consensus 93 ~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~ 172 (283)
T PF00248_consen 93 ERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEG 172 (283)
T ss_dssp HHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHH
T ss_pred ccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999888 999999999999999999999999999999999 55588999999999995554443
Q ss_pred H-----hcCCeEEEeccCCccccCCCCCCCCCCC
Q 044886 149 M-----ELGIGIVAYNLLECEFLSSGPKLIHLFA 177 (183)
Q Consensus 149 ~-----~~~i~v~a~~~l~~G~l~~~~~~~~~~~ 177 (183)
+ ++||++++|+|+++|.|++++......+
T Consensus 173 l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~ 206 (283)
T PF00248_consen 173 LLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPP 206 (283)
T ss_dssp HHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTST
T ss_pred ccccccccccccccccccccCccccccccCCCcc
Confidence 3 8899999999999999999987654443
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1e-38 Score=262.65 Aligned_cols=167 Identities=26% Similarity=0.447 Sum_probs=144.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCC--CchHHHHHHHHhhC-----------CCC-----C----CCCCHHH
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGP--HTNEILLGKVIYED-----------GKY-----S----YCGDPAY 62 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~~g~~l~~~-----------~k~-----~----~~~~~~~ 62 (183)
||...+.+++.++|++|+++|||+||||+.||. |.+|..+|++|++. +|. . ...+++.
T Consensus 36 ~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~ 115 (346)
T PRK09912 36 FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKY 115 (346)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEEecccCCCCcCCCCCCHHH
Confidence 444346778899999999999999999999994 88999999999741 232 1 1356899
Q ss_pred HHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc-----CCeeEEeee
Q 044886 63 LRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI-----HPITVVRLE 137 (183)
Q Consensus 63 i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~-----~~~~~~q~~ 137 (183)
+++++++||++||+||||+|++|+|++..++++++++|++|+++||||+||+|||++++++++.+. .+++++|++
T Consensus 116 i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ 195 (346)
T PRK09912 116 LLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPS 195 (346)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeecc
Confidence 999999999999999999999999998888999999999999999999999999999988766542 468999999
Q ss_pred cCcccCCcHH-HH-----hcCCeEEEeccCCccccCCCCC
Q 044886 138 WSLRSRDVKE-EM-----ELGIGIVAYNLLECEFLSSGPK 171 (183)
Q Consensus 138 ~~~~~~~~~~-~~-----~~~i~v~a~~~l~~G~l~~~~~ 171 (183)
||++++.... ++ ++||++++|+||++|+|++++.
T Consensus 196 ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~ 235 (346)
T PRK09912 196 YNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYL 235 (346)
T ss_pred CCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCC
Confidence 9999986432 23 9999999999999999999874
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.1e-37 Score=256.65 Aligned_cols=168 Identities=27% Similarity=0.372 Sum_probs=143.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCC-------CCchHHHHHHHHhhC---------CCCC-------------
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYG-------PHTNEILLGKVIYED---------GKYS------------- 55 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-------~g~sE~~~g~~l~~~---------~k~~------------- 55 (183)
||+..+.+++.++|+.|+++|||+||||+.|| .|.||..+|++|+.. +|..
T Consensus 23 ~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~~R~~v~i~TK~~~~~~~~~~~~~~~ 102 (346)
T PRK10625 23 FGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRGSREKLIIASKVSGPSRNNDKGIRPN 102 (346)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcCCcceEEEEcccccCCcCCCCCcCCC
Confidence 46556789999999999999999999999998 488999999999631 3431
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCC-----------------CCCHHHHHHHHHHHHHcCCccEEEecCcC
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDT-----------------KVPIEVTIGELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~-----------------~~~~~~~~~~l~~l~~~G~ir~iG~s~~~ 118 (183)
...+++.+++++++||++||+||||+|++|||+. ..++.++|++|++|+++||||+||+|||+
T Consensus 103 ~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~ 182 (346)
T PRK10625 103 QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNET 182 (346)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 1357899999999999999999999999999964 24678999999999999999999999999
Q ss_pred HHHHHHHhhc------CCeeEEeeecCcccCCcHH---HH--hcCCeEEEeccCCccccCCCCCC
Q 044886 119 ASTIRRAHTI------HPITVVRLEWSLRSRDVKE---EM--ELGIGIVAYNLLECEFLSSGPKL 172 (183)
Q Consensus 119 ~~~l~~~~~~------~~~~~~q~~~~~~~~~~~~---~~--~~~i~v~a~~~l~~G~l~~~~~~ 172 (183)
...++++... ..+.++|++||++++.... ++ ++||++++|+||++|+|++++..
T Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL~~G~Ltg~~~~ 247 (346)
T PRK10625 183 AFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLAFGTLTGKYLN 247 (346)
T ss_pred HHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccccCeeccCCCCC
Confidence 9888776532 3578999999999887543 33 99999999999999999998743
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.3e-37 Score=249.37 Aligned_cols=164 Identities=39% Similarity=0.519 Sum_probs=148.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC---------CCCCCC------CCHHHHHHHHHHHHHHc
Q 044886 10 PESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED---------GKYSYC------GDPAYLRAACEASLKRL 74 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~---------~k~~~~------~~~~~i~~~~~~sL~~l 74 (183)
+.+++.+++++|++.|||+||||+.||.|.+|..+|++|+.. +|..+. .+++.+++++++||++|
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999864 232222 58999999999999999
Q ss_pred CCCCcceEEeccCCCCCC-HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc--CCeeEEeeecCcccCCcHH---H
Q 044886 75 DVDCIDLYDQHRIDTKVP-IEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI--HPITVVRLEWSLRSRDVKE---E 148 (183)
Q Consensus 75 g~~~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~---~ 148 (183)
|++|+|+|+||+|+.... ..++|++|+++|++|+||+||+|||+.+.+.++++. .+|+++|++||++++.... +
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~ 186 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLP 186 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHH
Confidence 999999999999987766 889999999999999999999999999999999988 8999999999999999763 3
Q ss_pred H--hcCCeEEEeccCCccccCCCCCCC
Q 044886 149 M--ELGIGIVAYNLLECEFLSSGPKLI 173 (183)
Q Consensus 149 ~--~~~i~v~a~~~l~~G~l~~~~~~~ 173 (183)
+ ++||+|++|+||++|.+++++...
T Consensus 187 ~~~~~gi~v~~~~~l~~g~l~~~~~~~ 213 (285)
T cd06660 187 YCREHGIGVIAYSPLAGGLLTGKYLPG 213 (285)
T ss_pred HHHHcCcEEEEeccccCceecCCCCCC
Confidence 3 999999999999999999877543
No 9
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.6e-38 Score=253.93 Aligned_cols=162 Identities=21% Similarity=0.264 Sum_probs=140.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCC-------CCCCCCHHHHHHHHHHHHHHcCCC
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGK-------YSYCGDPAYLRAACEASLKRLDVD 77 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k-------~~~~~~~~~i~~~~~~sL~~lg~~ 77 (183)
||. ++++++.++|++|+++|||+||||+.|| .||..+|++|++... ...+.+++.+++++++||++||+|
T Consensus 26 ~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~tk~~~~~~~~i~~~~e~SL~rLg~d 102 (292)
T PRK14863 26 RGR-TPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLSTVRADRGPDFVEAEARASLRRMGVE 102 (292)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeecccccccccHHHHHHHHHHHHHHhCCC
Confidence 444 7899999999999999999999999997 799999999974211 113457899999999999999999
Q ss_pred CcceEEeccCCCC-CCH-HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCCeeEEeeecCcccCCcHH----HH--
Q 044886 78 CIDLYDQHRIDTK-VPI-EVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHPITVVRLEWSLRSRDVKE----EM-- 149 (183)
Q Consensus 78 ~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~----~~-- 149 (183)
|||+|++|++++. .+. .++|++|++|+++||||+||+|||+++.+..+....+|+++|++||+++++.+. .+
T Consensus 103 ~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~ 182 (292)
T PRK14863 103 RADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIA 182 (292)
T ss_pred ccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHH
Confidence 9999999999763 233 578999999999999999999999999998888788899999999999987532 33
Q ss_pred hcCCeEEEeccCCccccCCC
Q 044886 150 ELGIGIVAYNLLECEFLSSG 169 (183)
Q Consensus 150 ~~~i~v~a~~~l~~G~l~~~ 169 (183)
++||++++|+||++|+|++.
T Consensus 183 ~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 183 GMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred hCCCEEEEechhhCccccCC
Confidence 99999999999999999864
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.7e-37 Score=250.42 Aligned_cols=162 Identities=24% Similarity=0.353 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC----------CCCC-----CCCCHHHHHHHHHHHHHH
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED----------GKYS-----YCGDPAYLRAACEASLKR 73 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~----------~k~~-----~~~~~~~i~~~~~~sL~~ 73 (183)
++.+++.++|++|++.|||+||||+.||.|.+|..+|++|++. +|.. ...+++.+++++++||++
T Consensus 28 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~r 107 (314)
T PLN02587 28 VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLAR 107 (314)
T ss_pred CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999741 3432 246899999999999999
Q ss_pred cCCCCcceEEeccCCCC---CCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc---C--CeeEEeeecCcccCCc
Q 044886 74 LDVDCIDLYDQHRIDTK---VPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI---H--PITVVRLEWSLRSRDV 145 (183)
Q Consensus 74 lg~~~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~---~--~~~~~q~~~~~~~~~~ 145 (183)
||+||||+|++|+++.. .++.++|++|++|+++||||+||+|||++++++.+... . .+..+|+.||+.++..
T Consensus 108 L~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 187 (314)
T PLN02587 108 LQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL 187 (314)
T ss_pred hCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH
Confidence 99999999999999642 34678999999999999999999999999888776653 2 3334578888877543
Q ss_pred HH--HH--hcCCeEEEeccCCccccCCCC
Q 044886 146 KE--EM--ELGIGIVAYNLLECEFLSSGP 170 (183)
Q Consensus 146 ~~--~~--~~~i~v~a~~~l~~G~l~~~~ 170 (183)
.. ++ ++||++++|+||++|+|+++.
T Consensus 188 ~~ll~~~~~~gi~v~a~spl~~G~L~~~~ 216 (314)
T PLN02587 188 EDLLPYLKSKGVGVISASPLAMGLLTENG 216 (314)
T ss_pred HHHHHHHHHcCceEEEechhhccccCCCC
Confidence 22 33 999999999999999999875
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=7.1e-37 Score=243.66 Aligned_cols=161 Identities=22% Similarity=0.274 Sum_probs=139.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC----------CCC-CCCCCHHHHHHHHHHHH
Q 044886 3 AFYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED----------GKY-SYCGDPAYLRAACEASL 71 (183)
Q Consensus 3 ~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~----------~k~-~~~~~~~~i~~~~~~sL 71 (183)
|+|. ++.+++.+++++|++.|||+||||+.|| +|..+|++|++. +|. ....+++.+++++++||
T Consensus 9 Gt~~--~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~~~~~~~~~~~~~~SL 83 (267)
T PRK11172 9 GTFR--LKDQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWIDNLAKDKLIPSLKESL 83 (267)
T ss_pred Eccc--cChHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4553 3567899999999999999999999999 799999999742 342 33567899999999999
Q ss_pred HHcCCCCcceEEeccCCCC--CCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc---CCeeEEeeecCcccCCcH
Q 044886 72 KRLDVDCIDLYDQHRIDTK--VPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI---HPITVVRLEWSLRSRDVK 146 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~~ 146 (183)
++||+||||+|++|+|++. .+..++|++|++++++||||+||+|||+.++++++++. .+++++|++||+++++..
T Consensus 84 ~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~~~ 163 (267)
T PRK11172 84 QKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQNRK 163 (267)
T ss_pred HHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCcHH
Confidence 9999999999999999763 56789999999999999999999999999999988765 368999999999987643
Q ss_pred H-HH--hcCCeEEEeccCCccccCC
Q 044886 147 E-EM--ELGIGIVAYNLLECEFLSS 168 (183)
Q Consensus 147 ~-~~--~~~i~v~a~~~l~~G~l~~ 168 (183)
. ++ ++||+|++|+||++|.+..
T Consensus 164 ll~~~~~~gi~v~a~spl~~G~~~~ 188 (267)
T PRK11172 164 VVAFAKEHGIHVTSYMTLAYGKVLK 188 (267)
T ss_pred HHHHHHHCCCEEEEECCCCCCcccC
Confidence 3 44 9999999999999997653
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1e-36 Score=241.10 Aligned_cols=159 Identities=28% Similarity=0.332 Sum_probs=142.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC--------------CC-CCCCCCHHHHHHHH
Q 044886 3 AFYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED--------------GK-YSYCGDPAYLRAAC 67 (183)
Q Consensus 3 ~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~--------------~k-~~~~~~~~~i~~~~ 67 (183)
|||- .+..++.+.|+.|++.|+||||||..|+ +|..+|++|++. +| |...+.++.++.++
T Consensus 21 GTw~--~~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~RediFiTSKlw~~~~~~~~v~~al 95 (300)
T KOG1577|consen 21 GTWQ--SPPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKREDIFITSKLWPTDHAPELVEKAL 95 (300)
T ss_pred Eecc--cChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchhhheeeeccCccccChhhHHHHH
Confidence 6775 4688999999999999999999999999 999999999842 34 44468999999999
Q ss_pred HHHHHHcCCCCcceEEeccCCCC----------------CCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc--C
Q 044886 68 EASLKRLDVDCIDLYDQHRIDTK----------------VPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI--H 129 (183)
Q Consensus 68 ~~sL~~lg~~~iDl~~lh~~~~~----------------~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~--~ 129 (183)
++||++||+||+|+|++|||-.. .+..++|++|++++++|++|+||||||+..++++++.. .
T Consensus 96 ~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki 175 (300)
T KOG1577|consen 96 EKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKI 175 (300)
T ss_pred HHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCC
Confidence 99999999999999999999443 34678999999999999999999999999999999987 7
Q ss_pred CeeEEeeecCcccCCcHH-HH--hcCCeEEEeccCCcccc
Q 044886 130 PITVVRLEWSLRSRDVKE-EM--ELGIGIVAYNLLECEFL 166 (183)
Q Consensus 130 ~~~~~q~~~~~~~~~~~~-~~--~~~i~v~a~~~l~~G~l 166 (183)
+|.++|+++||..++... ++ ++||.|.||||||++.-
T Consensus 176 ~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~ 215 (300)
T KOG1577|consen 176 KPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGR 215 (300)
T ss_pred CCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCC
Confidence 899999999998888776 78 99999999999998765
No 13
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.6e-36 Score=241.58 Aligned_cols=161 Identities=29% Similarity=0.434 Sum_probs=139.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhh-C------CCC----------CCCCCHHHHHHH
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYE-D------GKY----------SYCGDPAYLRAA 66 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~-~------~k~----------~~~~~~~~i~~~ 66 (183)
.||.+.+++++.++++.|++.|||+||||+.||.|.+|+.+|++++. . +|. ....+++.++++
T Consensus 32 ~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~ 111 (290)
T PRK10376 32 VFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPYPDDLTIVTKVGARRGEDGSWLPAFSPAELRRA 111 (290)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcCCCeEEEEeeecccCCCCCccCCCCCHHHHHHH
Confidence 46655678999999999999999999999999999999999999853 1 342 235678999999
Q ss_pred HHHHHHHcCCCCcceEEeccCC-----CCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCCeeEEeeecCcc
Q 044886 67 CEASLKRLDVDCIDLYDQHRID-----TKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHPITVVRLEWSLR 141 (183)
Q Consensus 67 ~~~sL~~lg~~~iDl~~lh~~~-----~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~ 141 (183)
+++||++||+||||+|++|+++ ...++.++|++|++|+++||||+||+|||++++++++.+..+++++|++||++
T Consensus 112 ~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~ 191 (290)
T PRK10376 112 VHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLA 191 (290)
T ss_pred HHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhCCeEEEecccCCC
Confidence 9999999999999999988842 12357899999999999999999999999999999999888899999999999
Q ss_pred cCCcHH--HH--hcCCeEEEeccCCcc
Q 044886 142 SRDVKE--EM--ELGIGIVAYNLLECE 164 (183)
Q Consensus 142 ~~~~~~--~~--~~~i~v~a~~~l~~G 164 (183)
++.... +. ++||++++|+||+++
T Consensus 192 ~~~~~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 192 HRADDALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred cCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 876433 33 999999999999854
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=225.84 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=145.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhh-------------CCC----------CCCCCCHHHHH
Q 044886 8 SKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYE-------------DGK----------YSYCGDPAYLR 64 (183)
Q Consensus 8 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~-------------~~k----------~~~~~~~~~i~ 64 (183)
.++.++...++++|++.|||+||-|+.||.|.+|.++|.+|+. ++- ...+.++++|.
T Consensus 27 ~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~ 106 (298)
T COG4989 27 NMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHII 106 (298)
T ss_pred cCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhheEeeeccccccccccccccccccCcHHHHH
Confidence 3677899999999999999999999999999999999999972 111 13588999999
Q ss_pred HHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc--CCeeEEeeecCccc
Q 044886 65 AACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI--HPITVVRLEWSLRS 142 (183)
Q Consensus 65 ~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~--~~~~~~q~~~~~~~ 142 (183)
+|+|+||.+|+|||+|+++||+||+-.+.+++.+|+..|.+.||||++|||||++.+++-+.+. .++.++|+++|++.
T Consensus 107 ~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~ 186 (298)
T COG4989 107 KSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLH 186 (298)
T ss_pred HHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999888776 45899999999998
Q ss_pred CCcHH----HH--hcCCeEEEeccCCccccCCC
Q 044886 143 RDVKE----EM--ELGIGIVAYNLLECEFLSSG 169 (183)
Q Consensus 143 ~~~~~----~~--~~~i~v~a~~~l~~G~l~~~ 169 (183)
.+... ++ ++.|.++|||||++|.+..+
T Consensus 187 ~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 187 TPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred ccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 77544 33 99999999999999976543
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=1.9e-33 Score=224.81 Aligned_cols=157 Identities=22% Similarity=0.253 Sum_probs=135.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC----------CCCCCCCCHHHHHHHHHHHHH
Q 044886 3 AFYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED----------GKYSYCGDPAYLRAACEASLK 72 (183)
Q Consensus 3 ~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~----------~k~~~~~~~~~i~~~~~~sL~ 72 (183)
|+|. ++.+++.+++++|++.|+|+||||+.|| +|..+|++|++. +|. +..+++.+++++++||+
T Consensus 21 G~~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i~tK~-~~~~~~~~~~~~~~sL~ 94 (275)
T PRK11565 21 GVWQ--ASNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFITTKL-WNDDHKRPREALEESLK 94 (275)
T ss_pred ECcc--CCHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEEEEEe-cCcchHHHHHHHHHHHH
Confidence 5564 4678999999999999999999999999 799999999752 232 23467899999999999
Q ss_pred HcCCCCcceEEeccCCCCC-CHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc--CCeeEEeeecCcccCCcHH-H
Q 044886 73 RLDVDCIDLYDQHRIDTKV-PIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI--HPITVVRLEWSLRSRDVKE-E 148 (183)
Q Consensus 73 ~lg~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~-~ 148 (183)
+||++|+|+|++|+|++.. +..++|++|++|+++|+||+||+|||++++++++... .++.++|++||++.++... .
T Consensus 95 rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~~~~~~ 174 (275)
T PRK11565 95 KLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQRQLHA 174 (275)
T ss_pred HhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccchHHHHH
Confidence 9999999999999998653 4789999999999999999999999999999988755 3579999999999876433 4
Q ss_pred H--hcCCeEEEeccCCccc
Q 044886 149 M--ELGIGIVAYNLLECEF 165 (183)
Q Consensus 149 ~--~~~i~v~a~~~l~~G~ 165 (183)
+ ++||++++|+||++|.
T Consensus 175 ~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 175 WNATHKIQTESWSPLAQGG 193 (275)
T ss_pred HHHHCCCEEEEEccCCCCC
Confidence 4 9999999999999773
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=221.29 Aligned_cols=167 Identities=24% Similarity=0.267 Sum_probs=146.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC--------CCCC--CCCCHHHHHHHHHHHHHH
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED--------GKYS--YCGDPAYLRAACEASLKR 73 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~--------~k~~--~~~~~~~i~~~~~~sL~~ 73 (183)
.|...++++.+.++|++|++.|||+||||..|..|.||..+|++|++. +|.+ +-.+.+.+++-++++|++
T Consensus 26 ~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~~~~~edm~r~fneqLek 105 (391)
T COG1453 26 KEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWPVKDREDMERIFNEQLEK 105 (391)
T ss_pred ccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCccccCHHHHHHHHHHHHHH
Confidence 344557999999999999999999999999998889999999999853 4554 567899999999999999
Q ss_pred cCCCCcceEEeccCCCCCCHH-----HHHHHHHHHHHcCCccEEEecCcC-HHHHHHHhhcCCeeEEeeecCcccCCcH-
Q 044886 74 LDVDCIDLYDQHRIDTKVPIE-----VTIGELKRLVEEGKIKHIDLSEAF-ASTIRRAHTIHPITVVRLEWSLRSRDVK- 146 (183)
Q Consensus 74 lg~~~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~ir~iG~s~~~-~~~l~~~~~~~~~~~~q~~~~~~~~~~~- 146 (183)
||+||+|+|+||+... ..++ ..++.++++|++|+||++|+|.|+ .+.+.++++..++|++|++||.++....
T Consensus 106 l~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~ 184 (391)
T COG1453 106 LGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQA 184 (391)
T ss_pred hCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhc
Confidence 9999999999999976 3333 258999999999999999999975 6889999999999999999999998865
Q ss_pred --HHH----hcCCeEEEeccCCccccCCCCC
Q 044886 147 --EEM----ELGIGIVAYNLLECEFLSSGPK 171 (183)
Q Consensus 147 --~~~----~~~i~v~a~~~l~~G~l~~~~~ 171 (183)
+.+ ++|++|+.|+|+.+|.|+.+++
T Consensus 185 ~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP 215 (391)
T COG1453 185 GTEGLKYAASKGLGIFIMEPLDGGGLLYNVP 215 (391)
T ss_pred ccHHHHHHHhCCCcEEEEeeCCCCCcccCCC
Confidence 444 9999999999999999997543
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.98 E-value=7.4e-32 Score=208.27 Aligned_cols=181 Identities=23% Similarity=0.332 Sum_probs=153.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC--------CC---------CCCCCCHHHH
Q 044886 1 MSAFYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED--------GK---------YSYCGDPAYL 63 (183)
Q Consensus 1 ~~~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~--------~k---------~~~~~~~~~i 63 (183)
|++.||. .++++....|..|+.+|||+||||+.||.+++|..+|.++.+- +| ...+++.+.+
T Consensus 44 L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYyIaTKvgRy~ld~~~~Fdfsadkv 122 (342)
T KOG1576|consen 44 LGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYYIATKVGRYELDYANMFDFSADKV 122 (342)
T ss_pred hhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhheeeeeeeeecccCccccccchHHHH
Confidence 3567887 7899999999999999999999999999999999999999742 22 2368899999
Q ss_pred HHHHHHHHHHcCCCCcceEEeccCCCC----CCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc--CCeeEEe--
Q 044886 64 RAACEASLKRLDVDCIDLYDQHRIDTK----VPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI--HPITVVR-- 135 (183)
Q Consensus 64 ~~~~~~sL~~lg~~~iDl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~--~~~~~~q-- 135 (183)
++++++||++|++||+|++++|+.+.- ..+.|++.+|+++|++||+|+||++.++.+.+...+++ ..++++-
T Consensus 123 reSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY 202 (342)
T KOG1576|consen 123 RESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSY 202 (342)
T ss_pred HHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhh
Confidence 999999999999999999999998643 34679999999999999999999999999999999987 4477777
Q ss_pred eecCcccCCcHH--H-H-hcCCeEEEeccCCccccCCCCCCCCCCCCCCCC
Q 044886 136 LEWSLRSRDVKE--E-M-ELGIGIVAYNLLECEFLSSGPKLIHLFATKGCI 182 (183)
Q Consensus 136 ~~~~~~~~~~~~--~-~-~~~i~v~a~~~l~~G~l~~~~~~~~~~~~~~~~ 182 (183)
++|++.+..-.. . + .++++|+..++++.|+|+.+-+++..+.+.+.+
T Consensus 203 ~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHPaS~Elk 253 (342)
T KOG1576|consen 203 CRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHPASDELK 253 (342)
T ss_pred hhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCCCCHHHH
Confidence 555555544322 2 2 999999999999999999998888888776643
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.79 E-value=7.6e-05 Score=57.89 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc--CCeeEEeeecCcccCCcHH--HH--hcCCeEEEec
Q 044886 93 IEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI--HPITVVRLEWSLRSRDVKE--EM--ELGIGIVAYN 159 (183)
Q Consensus 93 ~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~--~~~~~~q~~~~~~~~~~~~--~~--~~~i~v~a~~ 159 (183)
+...|+.|++++.+|+|..||+|.+++.+++++++. +.|...|+...-.+.-|.+ +| +++|-+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCHHHHHHhhhcceeeeecC
Confidence 346899999999999999999999999999999988 6789999999887755544 66 8888887765
No 19
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.71 E-value=1.6 Score=36.91 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCC-------CCCCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 10 PESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDG-------KYSYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~-------k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
+......++++|++.|++++|||.+.. ....+....++.+ .+.|..+--.....+++-.+ .++++|+|
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i~si~iy 151 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFD--EIESIDIY 151 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhc--cccEEEEE
Confidence 344556899999999999999997665 3344444444433 23444444444444444443 57899999
Q ss_pred EeccCCCC
Q 044886 83 DQHRIDTK 90 (183)
Q Consensus 83 ~lh~~~~~ 90 (183)
..+.++..
T Consensus 152 ~g~~g~~~ 159 (389)
T COG1748 152 VGGLGEHG 159 (389)
T ss_pred EecCCCCC
Confidence 99988665
No 20
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=87.42 E-value=2.8 Score=32.17 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHhhcCCeeEEeeec
Q 044886 70 SLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS-EAFASTIRRAHTIHPITVVRLEW 138 (183)
Q Consensus 70 sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s-~~~~~~l~~~~~~~~~~~~q~~~ 138 (183)
....+|.|++=+++...-....+.+.+ ..+.+.. .+.++.+|+. |-+++.+.++.+...++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 445689999988743332223444433 3333322 3568899997 67899999999998999999975
No 21
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=86.16 E-value=17 Score=29.73 Aligned_cols=125 Identities=11% Similarity=-0.018 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC--c------CCCCCCc----hHHHHHHHHh---h-CC-------CCCCCCCHHHHHHH
Q 044886 10 PESGMIALTNHAIDSGINVLDT--S------DVYGPHT----NEILLGKVIY---E-DG-------KYSYCGDPAYLRAA 66 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~Dt--A------~~Yg~g~----sE~~~g~~l~---~-~~-------k~~~~~~~~~i~~~ 66 (183)
+.++..+..+.+.+.|+..||- + ..||.|. .-..+.+.++ + .+ |.....+.......
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~ 152 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFE 152 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHH
Confidence 5777778888888999999881 1 1355442 2333333333 2 11 11112221111346
Q ss_pred HHHHHHHcCCCCcceEEeccCCCCCCHHH---HHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhcCCeeEEeee
Q 044886 67 CEASLKRLDVDCIDLYDQHRIDTKVPIEV---TIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTIHPITVVRLE 137 (183)
Q Consensus 67 ~~~sL~~lg~~~iDl~~lh~~~~~~~~~~---~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~~~~~~~q~~ 137 (183)
+.+.++..| +|.+-+|.-........ -|+.+.++|+.-.|--||... ++++...++++....|.+++-
T Consensus 153 ~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 153 IADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred HHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 666677777 57778887533221111 278888888887888888887 688999999887778888873
No 22
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=83.44 E-value=4.9 Score=30.90 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=44.1
Q ss_pred HHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHhhcCCeeEEeeecC
Q 044886 71 LKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS-EAFASTIRRAHTIHPITVVRLEWS 139 (183)
Q Consensus 71 L~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s-~~~~~~l~~~~~~~~~~~~q~~~~ 139 (183)
...+|.|++=+++...-....+.+ ..+.+.+.. .+.++.+||. +-+++.+.++++...++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 456899988886433222223333 333333322 3568999998 568899999999999999999653
No 23
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=82.05 E-value=9.3 Score=31.26 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 3 AFYGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 3 ~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
|+||.|++.++-.++++..-+.|.|.+ .|++-. ... + ..+|.-.+..+++ +.+.+..+.-....|+++
T Consensus 6 GFYG~PWs~e~R~~l~~f~~~~kmN~Y----iYAPKd-Dpy----h--r~~Wre~Yp~~el-~~l~~L~~~a~~~~V~Fv 73 (306)
T PF07555_consen 6 GFYGRPWSHEDRLDLIRFLGRYKMNTY----IYAPKD-DPY----H--RSKWREPYPEEEL-AELKELADAAKANGVDFV 73 (306)
T ss_dssp -SSSS---HHHHHHHHHHHHHTT--EE----EE--TT--TT----T--TTTTTS---HHHH-HHHHHHHHHHHHTT-EEE
T ss_pred CcCCCCCCHHHHHHHHHHHHHcCCceE----EECCCC-ChH----H--HhhhcccCCHHHH-HHHHHHHHHHHHcCCEEE
Confidence 799999999999999999999999977 465200 000 0 1245444444443 334444444444556666
Q ss_pred EeccCCCC------CCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 83 DQHRIDTK------VPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 83 ~lh~~~~~------~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
+-=.|... .+++.+.+.++++.+-| ||.++|..
T Consensus 74 ~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~Failf 112 (306)
T PF07555_consen 74 YAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAILF 112 (306)
T ss_dssp EEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-
T ss_pred EEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEee
Confidence 55444322 23455678888888885 68888874
No 24
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=80.36 E-value=7.7 Score=29.92 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=44.2
Q ss_pred HHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEec-CcCHHHHHHHhhcCCeeEEeeecC
Q 044886 71 LKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGK-IKHIDLS-EAFASTIRRAHTIHPITVVRLEWS 139 (183)
Q Consensus 71 L~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iG~s-~~~~~~l~~~~~~~~~~~~q~~~~ 139 (183)
...+|.+|+=+++.-.-....+ .+...++.+.-. ++.+||. |.+.+.+.++++..+++.+|++-.
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs----~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~ 84 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVS----PEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGD 84 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCC----HHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCC
Confidence 3467888887765432112223 334444444444 8899998 578899999999999999999755
No 25
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=79.83 E-value=7 Score=33.99 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=48.6
Q ss_pred HHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc-CC--eeEEeeec
Q 044886 72 KRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI-HP--ITVVRLEW 138 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~-~~--~~~~q~~~ 138 (183)
+|+.+.|+|.+- .+++++++..++.+++|+..+||+-..-.+.++++++. .. +..-|...
T Consensus 196 kR~~~gyld~~~-------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSa 258 (545)
T TIGR01228 196 KRLETKYCDEQT-------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSA 258 (545)
T ss_pred HHHhcCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCcc
Confidence 566788999874 67899999999999999999999999889999999886 23 44445443
No 26
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=79.79 E-value=16 Score=30.25 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCeEeCcCCCCCCchHHHHHHHHhh---CCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEe
Q 044886 9 KPESGMIALTNHAIDSG-INVLDTSDVYGPHTNEILLGKVIYE---DGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQ 84 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~g~sE~~~g~~l~~---~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~l 84 (183)
++.++..+.-+.|-+.| .++...|..++.|+.-..+-++++. ........+.-.+...-.+.|+.-|+++ +-
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~----yn 159 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDR----YN 159 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhh----ee
Confidence 57788888888899999 8898888888633444444444442 2222222222233333344566667663 34
Q ss_pred ccCCC----------CCCHHHHHHHHHHHHHcCCccEE----EecCcCHHHHHHHhhcCCee-EEeeecCcccCC
Q 044886 85 HRIDT----------KVPIEVTIGELKRLVEEGKIKHI----DLSEAFASTIRRAHTIHPIT-VVRLEWSLRSRD 144 (183)
Q Consensus 85 h~~~~----------~~~~~~~~~~l~~l~~~G~ir~i----G~s~~~~~~l~~~~~~~~~~-~~q~~~~~~~~~ 144 (183)
|+.+. ...+++-++.++.+++.|.=-+- |+.+...+.+.-+......+ .-.+++|.+.+.
T Consensus 160 hNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~ 234 (335)
T COG0502 160 HNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPI 234 (335)
T ss_pred cccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCC
Confidence 65532 34578899999999999975543 44444445455444332211 455666666544
No 27
>PRK05414 urocanate hydratase; Provisional
Probab=79.46 E-value=7.8 Score=33.88 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=48.8
Q ss_pred HHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc-C--CeeEEeeec
Q 044886 72 KRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI-H--PITVVRLEW 138 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~-~--~~~~~q~~~ 138 (183)
+|+.+.|+|.+- .+++++++.+++.+++|+..+||+-..-.+.++++++. . .+..-|...
T Consensus 205 kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSa 267 (556)
T PRK05414 205 KRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSA 267 (556)
T ss_pred HHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCccc
Confidence 567788999874 67899999999999999999999999889999999887 2 344445433
No 28
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=79.06 E-value=7.4 Score=33.98 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc---CCeeE
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI---HPITV 133 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~---~~~~~ 133 (183)
+.+++.|+ +|+.+.|+|.+- .+++++++.+++.+++|+..+||+-..-.+.++++++. ..+..
T Consensus 187 Evd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~t 252 (546)
T PF01175_consen 187 EVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVT 252 (546)
T ss_dssp ES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE-
T ss_pred EECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCccc
Confidence 55555555 455678999885 67899999999999999999999999888999999887 33455
Q ss_pred EeeecC
Q 044886 134 VRLEWS 139 (183)
Q Consensus 134 ~q~~~~ 139 (183)
-|...|
T Consensus 253 DQTS~H 258 (546)
T PF01175_consen 253 DQTSAH 258 (546)
T ss_dssp --SSTT
T ss_pred CCCccc
Confidence 565543
No 29
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=77.19 E-value=22 Score=29.69 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCC------------CCCH-H---HH-HHHHHHHHHcCCccEEEecCcC
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDT------------KVPI-E---VT-IGELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~------------~~~~-~---~~-~~~l~~l~~~G~ir~iG~s~~~ 118 (183)
|..+.+.+++.++..++ ++.+++.+|.+.-... ..+. + +. ..+.+.|.+.|- .++++|||.
T Consensus 165 Pgqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 165 PTQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred CCCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 56677888888877664 7888888887753211 0111 1 11 234455666665 567888875
No 30
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=76.38 E-value=22 Score=30.15 Aligned_cols=61 Identities=18% Similarity=0.109 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCC-------------CCHHH---HH-HHHHHHHHcCCccEEEecCcC
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTK-------------VPIEV---TI-GELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~-------------~~~~~---~~-~~l~~l~~~G~ir~iG~s~~~ 118 (183)
|..+.+.+++.++..+ +|+.++|.++.+.-...+ .+.++ .+ .+.+.|.+.|- .++++|||.
T Consensus 177 Pgqt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeisnfa 254 (400)
T PRK07379 177 PHQTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGY-EHYEISNYA 254 (400)
T ss_pred CCCCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-ceeeeeheE
Confidence 4567777777777655 377788888766522110 01111 22 35556777775 568888876
No 31
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=73.11 E-value=52 Score=27.23 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCC---------CCHHHH-HHHHHHHHHcCCccEEEecCcCH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTK---------VPIEVT-IGELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~---------~~~~~~-~~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
|..+.+.+++.++..+ +++.+++.++.+.-.... .+.++. ..+.+.|.+.|- ..+++|||..
T Consensus 160 Pgqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 160 PLDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 4667777888776654 488888888776432110 112223 334555666674 6788888763
No 32
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.81 E-value=21 Score=28.20 Aligned_cols=104 Identities=17% Similarity=0.081 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHh---------------------hCCCC----CCCCCHHHH
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIY---------------------EDGKY----SYCGDPAYL 63 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~---------------------~~~k~----~~~~~~~~i 63 (183)
++.++..++.+.|-+.||.+|=|...-. +=.++ .-+. +.+|- .-.-+.++|
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l-~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI 128 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFL-EELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEI 128 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHH-HHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHH
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHH-HHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHH
Confidence 6788999999999999999986553211 11111 1111 11221 113466777
Q ss_pred HHHHHHHHHHcCCCCcceEEeccCCC-CCCHHH-HHHHHHHHHHcCCccEEEecCcCHH
Q 044886 64 RAACEASLKRLDVDCIDLYDQHRIDT-KVPIEV-TIGELKRLVEEGKIKHIDLSEAFAS 120 (183)
Q Consensus 64 ~~~~~~sL~~lg~~~iDl~~lh~~~~-~~~~~~-~~~~l~~l~~~G~ir~iG~s~~~~~ 120 (183)
.++++...+.-+ .++.++|++.. +.+.++ -+..|..|++.=- --+|+|.|+..
T Consensus 129 ~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 129 ERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp HHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred HHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 777776644443 68999999843 344444 3777777775544 67899988754
No 33
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=72.76 E-value=23 Score=30.48 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEecc
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHR 86 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~ 86 (183)
|..+.+.+++.++..++ ++.+++++|.+.-
T Consensus 225 PgqT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 57788888888877664 8999999998754
No 34
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=72.61 E-value=47 Score=26.45 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=26.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLDTS 32 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 32 (183)
.+|..++.++..++.+..-++||..|+.+
T Consensus 12 ~~~~~f~~~~~~~ia~~L~~~GVd~IEvG 40 (266)
T cd07944 12 VNNWDFGDEFVKAIYRALAAAGIDYVEIG 40 (266)
T ss_pred ccCccCCHHHHHHHHHHHHHCCCCEEEee
Confidence 45777899999999999999999999987
No 35
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=72.03 E-value=41 Score=26.78 Aligned_cols=50 Identities=20% Similarity=0.067 Sum_probs=40.2
Q ss_pred CCcceEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 77 DCIDLYDQHRIDTKVPI---EVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 77 ~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
...|+++|..|....+. .++++-|.+|+++|+ .|=+.+|+...+.+..+.
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~~D~ 208 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAYFDR 208 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhhCCE
Confidence 46899999999766664 467999999999977 777888898888877654
No 36
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=71.24 E-value=34 Score=28.56 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEecc-CCC---------C--CC-HHH----HHHHHHHHHHcCCccEEEecCcC
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHR-IDT---------K--VP-IEV----TIGELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~-~~~---------~--~~-~~~----~~~~l~~l~~~G~ir~iG~s~~~ 118 (183)
|..+.+.+++.++.. .+++.+++.++.+.- |.. . .+ .+. .-.+++.|.+.|- ..+++++|.
T Consensus 162 Pgqt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~~~~~~fa 239 (377)
T PRK08599 162 PGQTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGF-HQYEISNFA 239 (377)
T ss_pred CCCCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCC-cEeeeeeee
Confidence 466777777777664 557888877775431 110 0 01 111 1245566666674 567888875
No 37
>PRK05660 HemN family oxidoreductase; Provisional
Probab=70.63 E-value=47 Score=27.85 Aligned_cols=62 Identities=11% Similarity=0.036 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEecc-CCC-------CCC-HHHHH----HHHHHHHHcCCccEEEecCcCH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHR-IDT-------KVP-IEVTI----GELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~-~~~-------~~~-~~~~~----~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
|..+.+.+++.++..++ ++.+++.+|.+-- |.. ..+ .++.+ .+.+.|.+.|- ..+++|||..
T Consensus 169 pgqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 169 PDQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 45677777777776554 7888888776642 110 011 12222 23344555564 5578887753
No 38
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=70.61 E-value=38 Score=28.94 Aligned_cols=63 Identities=19% Similarity=0.216 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEec-cCCC----------CCCH----HHHHHHHHHHHHcCCccEEEecCcCH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQH-RIDT----------KVPI----EVTIGELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh-~~~~----------~~~~----~~~~~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
|..+.+.+.+.++..++ |+.++|.+|.+- -|.. ..+. .+.++...+...+---+.+|+|||.-
T Consensus 199 P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy~~yeisnfa~ 276 (416)
T COG0635 199 PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGYRQYEISNFAK 276 (416)
T ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCCcEEeechhcC
Confidence 67788888888888765 569999999883 3311 0111 13455444444444449999999875
No 39
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=70.00 E-value=24 Score=26.34 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=58.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEe
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQ 84 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~l 84 (183)
|..+....+..+-+..+-++|+.++=.+. .+|..++.+..+-+--......+-+...+.+.|++|+.+.=.++++
T Consensus 42 wd~~~~tpe~~~W~~e~k~~gi~v~vvSN-----n~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmV 116 (175)
T COG2179 42 WDNPDATPELRAWLAELKEAGIKVVVVSN-----NKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMV 116 (175)
T ss_pred ccCCCCCHHHHHHHHHHHhcCCEEEEEeC-----CCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEE
Confidence 44555667888999999999999886664 3899999998764432223333446788899999999998899988
Q ss_pred ccC
Q 044886 85 HRI 87 (183)
Q Consensus 85 h~~ 87 (183)
.+.
T Consensus 117 GDq 119 (175)
T COG2179 117 GDQ 119 (175)
T ss_pred cch
Confidence 753
No 40
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.65 E-value=58 Score=26.34 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCC-chHHHHHHHHhhC-CC--C----CCCCCHHHHHHHHHHHHHHcCCCCcce
Q 044886 10 PESGMIALTNHAIDSGINVLDTSDVYGPH-TNEILLGKVIYED-GK--Y----SYCGDPAYLRAACEASLKRLDVDCIDL 81 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~sE~~~g~~l~~~-~k--~----~~~~~~~~i~~~~~~sL~~lg~~~iDl 81 (183)
+.++..+.++.+.+.|++.|..-- |.. ..+...-+++++. +. . ....+.+.. ..+-+.|+..+ +
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A-~~~~~~l~~~~-----l 205 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEA-VELLRELAELG-----V 205 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHH-HHHHHHHHhcC-----C
Confidence 567778888999999999998642 211 1222333444432 21 1 122333332 23334444444 3
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCCccEE-EecCcCHHHHHHHhhcCCeeEEeeecCcccCC-cHH---HH--hcCCe
Q 044886 82 YDQHRIDTKVPIEVTIGELKRLVEEGKIKHI-DLSEAFASTIRRAHTIHPITVVRLEWSLRSRD-VKE---EM--ELGIG 154 (183)
Q Consensus 82 ~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i-G~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~---~~--~~~i~ 154 (183)
.++-.|-+. +-++.+.++++...|.-. |=+-++...++++++....+++|+..+.+-.- ... .+ ++|+.
T Consensus 206 ~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~ 281 (316)
T cd03319 206 ELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLK 281 (316)
T ss_pred CEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCC
Confidence 334444222 236677888888777622 33347889999999998899999986654211 111 23 89999
Q ss_pred EEEeccCCccc
Q 044886 155 IVAYNLLECEF 165 (183)
Q Consensus 155 v~a~~~l~~G~ 165 (183)
++..+-+.+++
T Consensus 282 ~~~~~~~~~~i 292 (316)
T cd03319 282 VMVGCMVESSL 292 (316)
T ss_pred EEEECchhhHH
Confidence 99876655543
No 41
>PLN02363 phosphoribosylanthranilate isomerase
Probab=69.03 E-value=24 Score=28.09 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHhhcCCeeEEeee
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS-EAFASTIRRAHTIHPITVVRLE 137 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s-~~~~~~l~~~~~~~~~~~~q~~ 137 (183)
+++.++... ++|.|++=+++...-......+ ..+.+.+......++.+||. +-+++.+.++++...++++|++
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 444454443 5899998886433222223333 33434443333347789997 6788999999999899999997
Q ss_pred cC
Q 044886 138 WS 139 (183)
Q Consensus 138 ~~ 139 (183)
-+
T Consensus 130 G~ 131 (256)
T PLN02363 130 GN 131 (256)
T ss_pred CC
Confidence 53
No 42
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=68.04 E-value=23 Score=31.86 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=47.3
Q ss_pred HHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHhhcCCeeEEeeecCc
Q 044886 72 KRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS-EAFASTIRRAHTIHPITVVRLEWSL 140 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s-~~~~~~l~~~~~~~~~~~~q~~~~~ 140 (183)
..+|.|++=+++...-....+.+.....+.+......++.+||. |-+++.+.++.+...++++|++-+.
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 55799999887555433334455423333333333457889997 6788999999999999999997643
No 43
>PRK15108 biotin synthase; Provisional
Probab=67.65 E-value=62 Score=26.87 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCch---HHHHHHHHhhCCC--CCCCCCHHHHHHHHHHHHHHcCCCCcceEE
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTN---EILLGKVIYEDGK--YSYCGDPAYLRAACEASLKRLDVDCIDLYD 83 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~s---E~~~g~~l~~~~k--~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~ 83 (183)
++.+++.+..+.+.+.|++.|-..-.+ .++. -..+.+.++...+ .....+...+.+..-+-|+..|++++.+-+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g-~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAW-KNPHERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecC-CCCCcchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEEeecc
Confidence 688999999999999999988432221 1121 1233344432111 111111112333333445566766543321
Q ss_pred ec------cCCCCCCHHHHHHHHHHHHHcCCccE
Q 044886 84 QH------RIDTKVPIEVTIGELKRLVEEGKIKH 111 (183)
Q Consensus 84 lh------~~~~~~~~~~~~~~l~~l~~~G~ir~ 111 (183)
=- ..-....+++.++.++.+++.|.--.
T Consensus 155 eT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 155 DTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred ccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 00 11112357889999999999997555
No 44
>PRK08508 biotin synthase; Provisional
Probab=67.33 E-value=63 Score=25.85 Aligned_cols=100 Identities=12% Similarity=-0.005 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEe---CcCCCCCCchHHH--HHHHHhhCC-CCCCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 9 KPESGMIALTNHAIDSGINVLD---TSDVYGPHTNEIL--LGKVIYEDG-KYSYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~D---tA~~Yg~g~sE~~--~g~~l~~~~-k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
.+.+++.+.++.|.+.|++-|- ....+....-|.+ +-+.+++.. ...+..+...+.+..-+-|+.-|++.+-.=
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~ 119 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHN 119 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEccc
Confidence 5889999999999999997653 2332321112222 223444332 211111111111222222333344322210
Q ss_pred ------EeccCCCCCCHHHHHHHHHHHHHcCC
Q 044886 83 ------DQHRIDTKVPIEVTIGELKRLVEEGK 108 (183)
Q Consensus 83 ------~lh~~~~~~~~~~~~~~l~~l~~~G~ 108 (183)
+....-....+++.++.++.+++.|.
T Consensus 120 lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi 151 (279)
T PRK08508 120 LETSKEFFPKICTTHTWEERFQTCENAKEAGL 151 (279)
T ss_pred ccchHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 01111223457888999999999885
No 45
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=66.94 E-value=58 Score=25.31 Aligned_cols=27 Identities=7% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 044886 6 GPSKPESGMIALTNHAIDSGINVLDTS 32 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~Gi~~~DtA 32 (183)
+..++.++..++++...+.|+..++.+
T Consensus 13 ~~~~s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 13 GATFSTEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 445789999999999999999999976
No 46
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=66.93 E-value=18 Score=31.21 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=47.7
Q ss_pred HHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc-CCeeEEee
Q 044886 72 KRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI-HPITVVRL 136 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~-~~~~~~q~ 136 (183)
.||.+.|+|..- .+++++++..++.+++|+-.+||+-..-++.+.++++. ..||++-=
T Consensus 205 ~Rl~t~y~d~~a-------~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtD 263 (561)
T COG2987 205 KRLRTGYLDEIA-------ETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTD 263 (561)
T ss_pred HHHhcchhhhhc-------CCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceecc
Confidence 466778988753 66899999999999999999999999889999999888 44555533
No 47
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=66.28 E-value=26 Score=30.33 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=41.9
Q ss_pred HHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHhhcCCeeEEeeecC
Q 044886 72 KRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS-EAFASTIRRAHTIHPITVVRLEWS 139 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s-~~~~~~l~~~~~~~~~~~~q~~~~ 139 (183)
..+|.|++=+.+...-....+.+.+ ..+.+... ++.+||- |-+++.+.++.+...++++|++-+
T Consensus 274 ~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 274 YDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4468888777643222222333333 22222222 8899998 678899999999989999999764
No 48
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=65.82 E-value=34 Score=29.49 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEe-ccCCC----------CC-CHHHH----HHHHHHHHHcCCccEEEecCcCH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQ-HRIDT----------KV-PIEVT----IGELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~l-h~~~~----------~~-~~~~~----~~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
|..+.+.+.+.++..+ +++.+.+.+|.+ |-|.. .. +.++. ..+.+.|.+.|- ..+++++|.-
T Consensus 214 Pgqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy-~~~~~~~far 291 (453)
T PRK13347 214 PHQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGY-VPIGLDHFAL 291 (453)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 5678888888887776 588888888866 32310 01 12222 245566777775 5689999863
No 49
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=65.28 E-value=79 Score=26.26 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHH-------------------HHHhhCCCC---C-CCCCHHHHHH
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLG-------------------KVIYEDGKY---S-YCGDPAYLRA 65 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g-------------------~~l~~~~k~---~-~~~~~~~i~~ 65 (183)
++.+.-.++.+.|-+.|+-+|=|--.+. ..+.+.- +.+.+.+|- + ---+-+++++
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~--svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~ 164 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLT--AVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEE 164 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHH--HHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHH
Confidence 5667777899999999999884432222 1111111 111111220 1 1335567777
Q ss_pred HHHHHHHHcCCCCcceEEeccCC-CCCCHHHH-HHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 044886 66 ACEASLKRLDVDCIDLYDQHRID-TKVPIEVT-IGELKRLVEEGKIKHIDLSEAFASTIRRA 125 (183)
Q Consensus 66 ~~~~sL~~lg~~~iDl~~lh~~~-~~~~~~~~-~~~l~~l~~~G~ir~iG~s~~~~~~l~~~ 125 (183)
+++...++ |. .|+.++|+.. ...+++++ +.+|..|++.= ---||+|.|+...+..+
T Consensus 165 av~~~r~~-g~--~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 165 AVAILREN-GN--PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred HHHHHHhc-CC--CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 77665554 33 3999999984 34566654 67777776663 66899999886644333
No 50
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=63.57 E-value=23 Score=26.76 Aligned_cols=68 Identities=16% Similarity=0.063 Sum_probs=43.3
Q ss_pred HHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhcCCeeEEeeecCc
Q 044886 69 ASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTIHPITVVRLEWSL 140 (183)
Q Consensus 69 ~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~~~~~~~q~~~~~ 140 (183)
.....+|.||+=+.+ .+.. +..-..+.+.++.+.-..+.+|+.. -+.+.+.++++...++++|++-+-
T Consensus 13 ~~~~~~g~d~~Gfi~--~~~S--~R~v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIF--YPKS--PRYVSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTC--TTB--HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeec--CCCC--CCccCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 345678888887753 3432 2222345555666555555889885 577888899988999999997665
No 51
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=63.56 E-value=52 Score=28.29 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEe-ccCC----------CCC-CHHH---HH-HHHHHHHHcCCccEEEecCcCH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQ-HRID----------TKV-PIEV---TI-GELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~l-h~~~----------~~~-~~~~---~~-~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
+..+.+.+.+.++..++ ++.+++.+|.+ +.|. ... +.++ .+ .+.+.|.+.| ...+++++|..
T Consensus 213 Pgqt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~G-y~~~~~~~fa~ 290 (455)
T TIGR00538 213 PKQTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAG-YQFIGMDHFAK 290 (455)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCC-CEEEeccceeC
Confidence 56788888888886655 88888888876 2111 001 1222 22 3444555556 47799998764
No 52
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=63.30 E-value=88 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEec
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQH 85 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh 85 (183)
|..+.+.+++.++..+ +++.+++.+|.+.
T Consensus 170 Pgqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 170 PGESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 5678888888777655 5888888888765
No 53
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=63.22 E-value=65 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEec
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQH 85 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh 85 (183)
|..+.+.+.+.++..+ +++.+++.+|.+.
T Consensus 161 Pgqt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 161 PNQTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 4667777777777665 4677777777654
No 54
>PTZ00413 lipoate synthase; Provisional
Probab=62.50 E-value=81 Score=26.84 Aligned_cols=154 Identities=13% Similarity=0.129 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCcCCCC----CCchHHHHHHHHhhCCC----CCCCCCHHHHHHHHHHHHHHcCCCC
Q 044886 7 PSKPESGMIALTNHAIDSGINVLDTSDVYG----PHTNEILLGKVIYEDGK----YSYCGDPAYLRAACEASLKRLDVDC 78 (183)
Q Consensus 7 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg----~g~sE~~~g~~l~~~~k----~~~~~~~~~i~~~~~~sL~~lg~~~ 78 (183)
.+.+.++..++-+.+.+.|++|+=.+.... .|..+. +.+.++...+ .........++- -+++|+.|.---
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf~g-~~e~l~~L~eAG 252 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDFHG-DLKSVEKLANSP 252 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCcccc-CHHHHHHHHhcC
Confidence 447889999999999999998764333332 122333 3344443221 111111111100 012344443334
Q ss_pred cceEEeccCCC-----------CCCHHHHHHHHHHHHHc--CCccE-----EEecCcCHHHHHHHhhc--CCeeEEee-e
Q 044886 79 IDLYDQHRIDT-----------KVPIEVTIGELKRLVEE--GKIKH-----IDLSEAFASTIRRAHTI--HPITVVRL-E 137 (183)
Q Consensus 79 iDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~--G~ir~-----iG~s~~~~~~l~~~~~~--~~~~~~q~-~ 137 (183)
+|.| =|+.+. ...+++.|+.|+.+++. +.|.- +|+.....+.++-+.+. ..++++.+ +
T Consensus 253 ~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtIGQ 331 (398)
T PTZ00413 253 LSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTLGQ 331 (398)
T ss_pred CCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEeecc
Confidence 5655 377532 23578889999999874 33322 55555444444333332 44555554 2
Q ss_pred c-------CcccCCcHH----HH-----hcCCeEEEeccCCc
Q 044886 138 W-------SLRSRDVKE----EM-----ELGIGIVAYNLLEC 163 (183)
Q Consensus 138 ~-------~~~~~~~~~----~~-----~~~i~v~a~~~l~~ 163 (183)
| .++.+...+ .+ +.|...++.+||-+
T Consensus 332 YL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 332 YLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred ccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 1 112222111 22 78888899998855
No 55
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=62.28 E-value=43 Score=26.19 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCc---hHHHHHHHH
Q 044886 8 SKPESGMIALTNHAIDSGINVLDTSDVYGPHT---NEILLGKVI 48 (183)
Q Consensus 8 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~---sE~~~g~~l 48 (183)
+-+.+++.++++.|.+.|++-+=..+||-+|. ++..+.+.+
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~ 59 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKA 59 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHH
Confidence 46889999999999999999766555665443 344444444
No 56
>PRK06256 biotin synthase; Validated
Probab=61.79 E-value=88 Score=25.56 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeE-eCcCCCCCCchH-HHHHHHHh---hCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEE
Q 044886 9 KPESGMIALTNHAIDSGINVL-DTSDVYGPHTNE-ILLGKVIY---EDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYD 83 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~-DtA~~Yg~g~sE-~~~g~~l~---~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~ 83 (183)
.+.++..+.++.+.+.|++.| -.+..++....+ ..+-+.++ +........+...+.+..-+.|++.|++.+-+-
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~- 169 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHN- 169 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecC-
Confidence 588999999999999998633 222233321111 12333333 222111111111233444455777786644321
Q ss_pred ecc-------CCCCCCHHHHHHHHHHHHHcCCc
Q 044886 84 QHR-------IDTKVPIEVTIGELKRLVEEGKI 109 (183)
Q Consensus 84 lh~-------~~~~~~~~~~~~~l~~l~~~G~i 109 (183)
+.. ......+++.+++++.+++.|.-
T Consensus 170 lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~ 202 (336)
T PRK06256 170 LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIE 202 (336)
T ss_pred CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCe
Confidence 111 11223467889999999999963
No 57
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=60.97 E-value=1.1e+02 Score=26.24 Aligned_cols=62 Identities=11% Similarity=-0.083 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCC------C-CHHH---HH-HHHHHHHHcCCccEEEecCcCH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTK------V-PIEV---TI-GELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~------~-~~~~---~~-~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
|..+.+.+++.++..+ +++.+++.++.+.-.... . ..++ .+ .+.+.|.+.| .+.+++++|.-
T Consensus 203 P~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~G-y~~yei~~far 275 (430)
T PRK08208 203 PGQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAG-YTQTSMRMFRR 275 (430)
T ss_pred CCCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcC-CeEEeecceec
Confidence 5667777777777776 478888888776432111 0 1111 22 3444556666 46688888753
No 58
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=60.56 E-value=83 Score=27.00 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=67.4
Q ss_pred HHHHHHHHcCC--CeEeCcCCCC-CCchHHHHHHHHhhCCCCC------CCCCHHHHHHHHHHHHHHcCCCCcceEEe--
Q 044886 16 ALTNHAIDSGI--NVLDTSDVYG-PHTNEILLGKVIYEDGKYS------YCGDPAYLRAACEASLKRLDVDCIDLYDQ-- 84 (183)
Q Consensus 16 ~~l~~A~~~Gi--~~~DtA~~Yg-~g~sE~~~g~~l~~~~k~~------~~~~~~~i~~~~~~sL~~lg~~~iDl~~l-- 84 (183)
..+++++++|- +.| .|| +|..-..+++.|...++.. ...+.+++++.++++.+.++...==+++|
T Consensus 37 ~~lrr~v~~~~l~SmI----l~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDE 112 (436)
T COG2256 37 KPLRRAVEAGHLHSMI----LWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDE 112 (436)
T ss_pred chHHHHHhcCCCceeE----EECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEeh
Confidence 56888888773 233 576 4556677788887654422 35678899999999988887444445554
Q ss_pred -ccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCH
Q 044886 85 -HRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 85 -h~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
|+++ ...-++|.-.++.|.|--||-++-+|
T Consensus 113 IHRfn-----K~QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 113 IHRFN-----KAQQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred hhhcC-----hhhhhhhhhhhcCCeEEEEeccCCCC
Confidence 5553 34578899999999999999997443
No 59
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=58.94 E-value=1.1e+02 Score=25.64 Aligned_cols=157 Identities=13% Similarity=0.090 Sum_probs=82.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCC------CchHHHHHHHHhhCCC-------------------------
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGP------HTNEILLGKVIYEDGK------------------------- 53 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------g~sE~~~g~~l~~~~k------------------------- 53 (183)
.|..++.++-.++++...++|++.|+.+..-.. +..++.+ +.+++..+
T Consensus 61 ~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~-~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~ 139 (347)
T PLN02746 61 EKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVM-AAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVA 139 (347)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHH-HHHHhccCCceeEEcCCHHHHHHHHHcCcCEEE
Confidence 355688999999999999999999998743221 1233333 23332100
Q ss_pred -----------CCCCCCHHHHHHHHHHHHHHc---CCCCcceEE---eccCCCC-CCHHHHHHHHHHHHHcCCccEEEec
Q 044886 54 -----------YSYCGDPAYLRAACEASLKRL---DVDCIDLYD---QHRIDTK-VPIEVTIGELKRLVEEGKIKHIDLS 115 (183)
Q Consensus 54 -----------~~~~~~~~~i~~~~~~sL~~l---g~~~iDl~~---lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iG~s 115 (183)
.....+++++.+.+.+..+.. |. .+..++ +-+|+.. .+.+.+++..+++.+.| +..|.++
T Consensus 140 i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G-ad~I~l~ 217 (347)
T PLN02746 140 VFASASESFSKSNINCSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG-CYEISLG 217 (347)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC-CCEEEec
Confidence 002344455444444444433 32 243333 3344332 46677788888888887 5678887
Q ss_pred C----cCHHHHHHHhhcC--CeeEEeeecCcccCCcHH------HHhcCCeEEEeccCCcc
Q 044886 116 E----AFASTIRRAHTIH--PITVVRLEWSLRSRDVKE------EMELGIGIVAYNLLECE 164 (183)
Q Consensus 116 ~----~~~~~l~~~~~~~--~~~~~q~~~~~~~~~~~~------~~~~~i~v~a~~~l~~G 164 (183)
. ..|.++.++++.. .+....+.+|.-+..... .++.|+..+=-+..+-|
T Consensus 218 DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlG 278 (347)
T PLN02746 218 DTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLG 278 (347)
T ss_pred CCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 5 3466655554431 111223444443332211 22777766655444433
No 60
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=58.92 E-value=81 Score=24.23 Aligned_cols=107 Identities=11% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCc-CCCCCCchH-HHHHHHHhh--CCCC--CCCCCHHHHHHHHHHHHHHcCCCCc
Q 044886 6 GPSKPESGMIALTNHAIDSGINVLDTS-DVYGPHTNE-ILLGKVIYE--DGKY--SYCGDPAYLRAACEASLKRLDVDCI 79 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~g~sE-~~~g~~l~~--~~k~--~~~~~~~~i~~~~~~sL~~lg~~~i 79 (183)
+..++.++..++++...++||..|+++ +..+ ..+ ..+.+..+. ..+. ......+.++..++.. ...|.+.+
T Consensus 8 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~g~~~i 84 (237)
T PF00682_consen 8 GVAFSTEEKLEIAKALDEAGVDYIEVGFPFAS--EDDFEQVRRLREALPNARLQALCRANEEDIERAVEAA-KEAGIDII 84 (237)
T ss_dssp STT--HHHHHHHHHHHHHHTTSEEEEEHCTSS--HHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH-HHTTSSEE
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEcccccC--HHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhh-HhccCCEE
Confidence 445789999999999999999999999 4333 222 223332221 1111 1233445555555433 35566655
Q ss_pred ceEEeccC-----CCCC----CHHHHHHHHHHHHHcCCccEEEec
Q 044886 80 DLYDQHRI-----DTKV----PIEVTIGELKRLVEEGKIKHIDLS 115 (183)
Q Consensus 80 Dl~~lh~~-----~~~~----~~~~~~~~l~~l~~~G~ir~iG~s 115 (183)
.++.-=+. .-.. .++.+.+.++.+++.|.-..+++-
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 55531111 0000 133345555666666666666654
No 61
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=58.67 E-value=88 Score=24.60 Aligned_cols=159 Identities=11% Similarity=0.053 Sum_probs=84.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCC------CC------------------------
Q 044886 6 GPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGK------YS------------------------ 55 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k------~~------------------------ 55 (183)
+..++.++..++++.-.++|+..++++... .+..+..+-+.+.+..+ +.
T Consensus 14 ~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~ 92 (259)
T cd07939 14 GVAFSREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPV 92 (259)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEec
Confidence 456889999999999999999999987321 23455333344433110 00
Q ss_pred --------CCCCHHHHHHHHHHHHHH---cCCCCcceEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEecC----cCH
Q 044886 56 --------YCGDPAYLRAACEASLKR---LDVDCIDLYDQHRIDTK-VPIEVTIGELKRLVEEGKIKHIDLSE----AFA 119 (183)
Q Consensus 56 --------~~~~~~~i~~~~~~sL~~---lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iG~s~----~~~ 119 (183)
...+++...+.+.+.++. .|. ++ .+..++.. .+.+.+.+..+++.+.| +..|.++. ..|
T Consensus 93 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v---~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P 167 (259)
T cd07939 93 SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FV---SVGAEDASRADPDFLIEFAEVAQEAG-ADRLRFADTVGILDP 167 (259)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eE---EEeeccCCCCCHHHHHHHHHHHHHCC-CCEEEeCCCCCCCCH
Confidence 011222222222222222 232 11 12223222 34566666666776665 56777774 346
Q ss_pred HHHHHHhhcC--CeeEEeeecCcccCCcHH---HH---hcCCeEEEeccCCccccCCCCC
Q 044886 120 STIRRAHTIH--PITVVRLEWSLRSRDVKE---EM---ELGIGIVAYNLLECEFLSSGPK 171 (183)
Q Consensus 120 ~~l~~~~~~~--~~~~~q~~~~~~~~~~~~---~~---~~~i~v~a~~~l~~G~l~~~~~ 171 (183)
..+.+++... ... +.+.+|.-+..... .+ +.|+.++=-+..|-|.-+|+..
T Consensus 168 ~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~aGN~~ 226 (259)
T cd07939 168 FTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERAGNAA 226 (259)
T ss_pred HHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccccccCcC
Confidence 6655554431 111 45555554433211 12 8888888888777787666553
No 62
>PRK09389 (R)-citramalate synthase; Provisional
Probab=58.13 E-value=1.3e+02 Score=26.38 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCcC
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLDTSD 33 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~ 33 (183)
.+|.+++.++..++.+...+.|+..|+.+.
T Consensus 16 ~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 16 TPGVSLTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 357778999999999999999999999873
No 63
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=57.97 E-value=70 Score=23.24 Aligned_cols=81 Identities=15% Similarity=0.137 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHhhcCCeeEE
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEE--GKIKHIDLSEAFASTIRRAHTIHPITVV 134 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iG~s~~~~~~l~~~~~~~~~~~~ 134 (183)
..+.+.+.+.+++.-+.+|.+ ++++|- ..--+.++.+.+..+. |.|-.=|--+|..-.++.++.....-++
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-~~~~QS------N~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~V 97 (146)
T PRK13015 25 HETLADVEALCRAAAEALGLE-VEFRQS------NHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVI 97 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEee------CcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEE
Confidence 568899999999999999975 788772 2234678888887442 3333333335667778888888777799
Q ss_pred eeecCcccCC
Q 044886 135 RLEWSLRSRD 144 (183)
Q Consensus 135 q~~~~~~~~~ 144 (183)
.+..|-...+
T Consensus 98 EVHiSNi~aR 107 (146)
T PRK13015 98 EVHISNVHAR 107 (146)
T ss_pred EEEcCCcccc
Confidence 9988876654
No 64
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=57.96 E-value=53 Score=23.67 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec----CcCHHHHHHHhhcCCee
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS----EAFASTIRRAHTIHPIT 132 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s----~~~~~~l~~~~~~~~~~ 132 (183)
..+.+.+.+.+.+.-+.+|++ ++++|- ..--+.++.+.+..+ .+..|=+. +|..-.++.++.....-
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~~-v~~~QS------N~Egelid~I~~a~~--~~dgiIINpga~THtSvAi~DAl~~~~~P 93 (140)
T cd00466 23 TTTLADIEALLRELAAELGVE-VEFFQS------NHEGELIDWIHEARD--GADGIIINPGAYTHTSIALRDALAAVSIP 93 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCCE-EEEEee------CcHHHHHHHHHHhhc--cCcEEEEcchHHHHHHHHHHHHHHcCCCC
Confidence 668899999999999999985 888872 223467888888754 34444444 46667788888887777
Q ss_pred EEeeecCcccCC
Q 044886 133 VVRLEWSLRSRD 144 (183)
Q Consensus 133 ~~q~~~~~~~~~ 144 (183)
++.+..|-...+
T Consensus 94 ~VEVHiSNi~aR 105 (140)
T cd00466 94 VIEVHISNIHAR 105 (140)
T ss_pred EEEEecCCcccc
Confidence 999998876554
No 65
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=57.88 E-value=29 Score=26.21 Aligned_cols=41 Identities=15% Similarity=0.089 Sum_probs=25.8
Q ss_pred CcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 044886 78 CIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTI 122 (183)
Q Consensus 78 ~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l 122 (183)
.+|.++||..++ . +.++.+.+......++.+|+++.....+
T Consensus 73 ~~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 478999998752 1 2233333333346889999998655443
No 66
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=57.26 E-value=96 Score=24.56 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCC-CCCC---------CCCHHHH----------HHHHHHHHH
Q 044886 13 GMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDG-KYSY---------CGDPAYL----------RAACEASLK 72 (183)
Q Consensus 13 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~-k~~~---------~~~~~~i----------~~~~~~sL~ 72 (183)
++.+.+..+++.|-+.| .+|.|.|-.+-..-..+.. .+.. ......+ .+.-.+.+.
T Consensus 37 ~av~~~~~~l~~ggrl~----~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~ 112 (257)
T cd05007 37 RAVDAAAERLRAGGRLI----YVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQ 112 (257)
T ss_pred HHHHHHHHHHHcCCEEE----EEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHH
Confidence 45556667777788877 4677777654322222111 1100 0111111 122344555
Q ss_pred HcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 73 RLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 73 ~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
..+...=|++..-...... ..++++++.+++.| +.-|++++.....+.+..+.
T Consensus 113 a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~aD~ 165 (257)
T cd05007 113 AINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLADI 165 (257)
T ss_pred HcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCCE
Confidence 5666778999887776543 46899999999997 88999999877777666443
No 67
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.44 E-value=1e+02 Score=24.55 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCcC
Q 044886 6 GPSKPESGMIALTNHAIDSGINVLDTSD 33 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~Gi~~~DtA~ 33 (183)
|..++.++..++++...++|+..++.+.
T Consensus 16 ~~~~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 16 NAFFDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 5568999999999999999999999863
No 68
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=56.16 E-value=18 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYG 36 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 36 (183)
.+.+.+.+....+++.|+++||.+..|.
T Consensus 74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 74 LPHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred CchhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 4567788999999999999999999885
No 69
>PLN02389 biotin synthase
Probab=55.03 E-value=1.3e+02 Score=25.41 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcC-CCCCCch---HHHHHHHHhhCCCC--CCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSD-VYGPHTN---EILLGKVIYEDGKY--SYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~-~Yg~g~s---E~~~g~~l~~~~k~--~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
++.+++.+.++.+.+.|++.|-... ..+.+.. -..+-+.++...+. ....+...+.+..-+.|+..|++.+-.-
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~~ 195 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNHN 195 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEee
Confidence 7899999999999999999874321 1111111 12333334332121 1122222233344444555677654331
Q ss_pred Eecc-------CCCCCCHHHHHHHHHHHHHcCC
Q 044886 83 DQHR-------IDTKVPIEVTIGELKRLVEEGK 108 (183)
Q Consensus 83 ~lh~-------~~~~~~~~~~~~~l~~l~~~G~ 108 (183)
+ .. .-....+++.++.++.+++.|.
T Consensus 196 L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 196 L-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred e-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 1 11 0112357888999999999995
No 70
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=54.90 E-value=32 Score=25.75 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=30.7
Q ss_pred cceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcC
Q 044886 79 IDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 79 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~ 118 (183)
-++++++....+..-++-+..|.++..+|++|++-+.-++
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 5677777665555567789999999999999998766443
No 71
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=54.29 E-value=96 Score=23.67 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=92.5
Q ss_pred HHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCC---CCCCCCCHHHHHHHHH-----------HHHHHcCCCCcce
Q 044886 16 ALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDG---KYSYCGDPAYLRAACE-----------ASLKRLDVDCIDL 81 (183)
Q Consensus 16 ~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~---k~~~~~~~~~i~~~~~-----------~sL~~lg~~~iDl 81 (183)
++|..-++-|-+.+|-+-..| + +-+.|++.. .+..+.+.+.+.++++ +-|....-+.+|.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG----~--LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG----E--LLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch----H--HHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccE
Confidence 456667788999999765444 3 235555432 2445777777666654 4555555556666
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhh-c-CCeeEEeeecCcccCCcHH-----HH-----
Q 044886 82 YDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHT-I-HPITVVRLEWSLRSRDVKE-----EM----- 149 (183)
Q Consensus 82 ~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~-~-~~~~~~q~~~~~~~~~~~~-----~~----- 149 (183)
+.+...-.. +....+.|+++.+=|+---+++.||.-...+.-+- . .-|..-+++|+.++.+.-. +|
T Consensus 79 VIlsqtLQ~--~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 79 VILSQTLQA--VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred EehHhHHHh--HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 665443111 22234567778888998889999998776655544 2 3377788899988766311 33
Q ss_pred hcCCeEEEeccCCccc
Q 044886 150 ELGIGIVAYNLLECEF 165 (183)
Q Consensus 150 ~~~i~v~a~~~l~~G~ 165 (183)
+.|+.|.-..++.++.
T Consensus 157 ~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 157 ELGIRIEERVFLDGGR 172 (193)
T ss_pred HCCCEEEEEEEEcCCC
Confidence 8999999999888876
No 72
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=54.29 E-value=1.2e+02 Score=24.68 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhh
Q 044886 67 CEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHT 127 (183)
Q Consensus 67 ~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~ 127 (183)
..+.|...+...=|++..-...... ..++++++.+++.| ++-|++++.....+.+..+
T Consensus 116 ~~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~aD 173 (296)
T PRK12570 116 GAQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKIAD 173 (296)
T ss_pred HHHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCC
Confidence 3445555665567999887775543 46899999999998 7889999877666665543
No 73
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=53.33 E-value=62 Score=25.14 Aligned_cols=83 Identities=17% Similarity=0.051 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcC-CccEEEecCcCHHHHHHHhhcCCeeEEe
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEG-KIKHIDLSEAFASTIRRAHTIHPITVVR 135 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iG~s~~~~~~l~~~~~~~~~~~~q 135 (183)
..+.+...+-+ +.|.++|+++|.+-..-.+.......+.++.++++++.+ .++...++......++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 44555544444 447788988777765433311111245678888888888 5777677765577777777664 57777
Q ss_pred eecCcc
Q 044886 136 LEWSLR 141 (183)
Q Consensus 136 ~~~~~~ 141 (183)
+.+..-
T Consensus 93 i~~~~s 98 (265)
T cd03174 93 IFDSAS 98 (265)
T ss_pred EEEecC
Confidence 766554
No 74
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=52.37 E-value=74 Score=22.97 Aligned_cols=79 Identities=13% Similarity=0.140 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec----CcCHHHHHHHhhcCCee
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS----EAFASTIRRAHTIHPIT 132 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s----~~~~~~l~~~~~~~~~~ 132 (183)
..+.+.+.+.+++--+.+|++ ++++|- ..--+.++.+.+..++ +..|=+. ++..-.++.++.....-
T Consensus 23 ~~tl~di~~~~~~~a~~~g~~-v~~~QS------N~EGelId~i~~a~~~--~dgiIINpga~THtSiAl~DAl~~~~~P 93 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNVE-LEFFQS------NSEGQLIDKIHEAEGQ--YDGIIINPGALTHTSVALRDALAAVSLP 93 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEee------CcHHHHHHHHHhcccc--CCEEEEcChHHhhhHHHHHHHHHcCCCC
Confidence 568899999999999999976 888772 2234677888877432 4444443 56667788888777777
Q ss_pred EEeeecCcccCC
Q 044886 133 VVRLEWSLRSRD 144 (183)
Q Consensus 133 ~~q~~~~~~~~~ 144 (183)
++.+..|-...+
T Consensus 94 ~vEVHiSNi~aR 105 (141)
T TIGR01088 94 VVEVHLSNVHAR 105 (141)
T ss_pred EEEEEcCCcccc
Confidence 999998876655
No 75
>PRK07094 biotin synthase; Provisional
Probab=51.85 E-value=1.3e+02 Score=24.40 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc----CCCCCCchHHH--HHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 9 KPESGMIALTNHAIDSGINVLDTS----DVYGPHTNEIL--LGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA----~~Yg~g~sE~~--~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
.+.++..+.++.+.+.|++.|--. +.|. .+.+ +-+.+++........+.....+..-+.|++.|.+.+-+-
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~---~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT---DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC---HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEec
Confidence 478889999999999999877422 2232 2221 223333322211111111122223345666676544321
Q ss_pred EeccC--------CCCCCHHHHHHHHHHHHHcCCccE----EEecCcCHHHHHHHhh
Q 044886 83 DQHRI--------DTKVPIEVTIGELKRLVEEGKIKH----IDLSEAFASTIRRAHT 127 (183)
Q Consensus 83 ~lh~~--------~~~~~~~~~~~~l~~l~~~G~ir~----iG~s~~~~~~l~~~~~ 127 (183)
+... ......++.+++++.+++.|.--. +|+...+.+.+...+.
T Consensus 147 -lEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 147 -HETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred -cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 1111 123457889999999999996322 3443445555544433
No 76
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=51.75 E-value=78 Score=25.19 Aligned_cols=60 Identities=22% Similarity=0.312 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcC
Q 044886 12 SGMIALTNHAIDSGINVLDTSDVYGPHT------NEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 12 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg 75 (183)
.-+.+-...|+++|+++||++ .+|.|. .|.++ ..|... +...++.+.+.+..++-++.+.
T Consensus 195 Gla~AN~laA~~aGa~~vd~s-~~G~G~~aGN~~~E~~v-~~l~~~--~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 195 QLALANTLEAIELGVEIIDAT-VYGMGRGAGNLPTELLL-DYLNNK--FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred cHHHHHHHHHHHcCCCEEEEe-cccCCCCcCcHHHHHHH-HHHHHh--hccCCCHHHHHHHHHHHHHHHH
Confidence 345566677889999999988 344333 24433 334332 2335666666666655555543
No 77
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.41 E-value=1.3e+02 Score=24.02 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=25.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcC
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSD 33 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~ 33 (183)
||..++.++..++.....+.|+..||...
T Consensus 14 ~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 14 LATRMRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred hceeccHHHHHHHHHHHHHcCCCEEEccC
Confidence 46678899999999999999999999873
No 78
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=50.16 E-value=67 Score=20.71 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=36.3
Q ss_pred CCcceEEeccCCCCCCHHHHHHHHHHHHHcC-CccEEEecC-cCHHHHHHHhhcCCeeEEeeec
Q 044886 77 DCIDLYDQHRIDTKVPIEVTIGELKRLVEEG-KIKHIDLSE-AFASTIRRAHTIHPITVVRLEW 138 (183)
Q Consensus 77 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iG~s~-~~~~~l~~~~~~~~~~~~q~~~ 138 (183)
..+|++++....+...-.++++.+ ++.+ .++-|-+++ .+.....++++..-.+++.-++
T Consensus 42 ~~~d~iiid~~~~~~~~~~~~~~i---~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 42 HPPDLIIIDLELPDGDGLELLEQI---RQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp STESEEEEESSSSSSBHHHHHHHH---HHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred cCceEEEEEeeecccccccccccc---ccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 449999987665544444455544 4444 788888886 4556677777664444444444
No 79
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.96 E-value=1.6e+02 Score=24.93 Aligned_cols=112 Identities=10% Similarity=0.084 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCC-----------CCHHHHHHHHHHHHHcCCccEEEec-------Cc
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTK-----------VPIEVTIGELKRLVEEGKIKHIDLS-------EA 117 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iG~s-------~~ 117 (183)
...|...+-..+++..+. +...==.+.||.|++. .+++++++++.+..+... |.|-+- |.
T Consensus 207 ITVST~Givp~I~~la~~-~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvND 284 (371)
T PRK14461 207 MTVSTVGLVKGIRRLANE-RLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKND 284 (371)
T ss_pred eEEEeecchhHHHHHHhc-ccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCC
Confidence 344444555555444432 2222235778998542 357889999998876533 344443 55
Q ss_pred CHHHHHHHhh---cC------CeeEEeeecCcccCC----c-HH---HH-----hcCCeEEEeccCCc------cccCCC
Q 044886 118 FASTIRRAHT---IH------PITVVRLEWSLRSRD----V-KE---EM-----ELGIGIVAYNLLEC------EFLSSG 169 (183)
Q Consensus 118 ~~~~l~~~~~---~~------~~~~~q~~~~~~~~~----~-~~---~~-----~~~i~v~a~~~l~~------G~l~~~ 169 (183)
++++.+++.+ .. +.-++-++||+.... + .. .| ++||.+....+.|. |+|..+
T Consensus 285 s~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~ 364 (371)
T PRK14461 285 HPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGR 364 (371)
T ss_pred CHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccC
Confidence 6666555544 34 568999999986432 1 11 22 88999999988855 666543
No 80
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=49.84 E-value=1.5e+02 Score=24.70 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCch---HHHHHHHHhhCCC----CC---CCCCHHHHHHHHHHHHHHcCCCC
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTN---EILLGKVIYEDGK----YS---YCGDPAYLRAACEASLKRLDVDC 78 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~s---E~~~g~~l~~~~k----~~---~~~~~~~i~~~~~~sL~~lg~~~ 78 (183)
++.++..+.++.+.+.|++.|=-.. |.+.+ -..+.+.++...+ .. ...+.+.+ +-|+..|++.
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvg--Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~-----~~Lk~aGv~r 175 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVT--GESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEY-----KKLVEAGLDG 175 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEee--CCCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHH-----HHHHHcCCCE
Confidence 5889999999999999998664221 21121 2334444442211 11 12344444 6777888876
Q ss_pred cceEEe----------ccCCCCCCHHHHHHHHHHHHHcCC
Q 044886 79 IDLYDQ----------HRIDTKVPIEVTIGELKRLVEEGK 108 (183)
Q Consensus 79 iDl~~l----------h~~~~~~~~~~~~~~l~~l~~~G~ 108 (183)
+-+.+= |-......+++.+++++.+++.|.
T Consensus 176 ~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 176 VTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred EEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 655431 211233468889999999999985
No 81
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=48.65 E-value=2.1e+02 Score=25.90 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCC---------CCCCCCHHHHHHHHHHHHHHcC
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGK---------YSYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k---------~~~~~~~~~i~~~~~~sL~~lg 75 (183)
|++ .+.+-....++.|.++|+..|=...+--.=++-+.-.++.++.++ .++-++.+.+.+.+++ +..+|
T Consensus 90 y~~-~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~-l~~~G 167 (596)
T PRK14042 90 YRN-YADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKK-LAEMG 167 (596)
T ss_pred ccc-CChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHH-HHHcC
Confidence 444 566777889999999999654333222211233334455555543 2356777777776655 56677
Q ss_pred CCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcC
Q 044886 76 VDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 76 ~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~ 118 (183)
. |.+.|-+.-......++.+.+..++++=. --|++=.|+
T Consensus 168 a---d~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hn 206 (596)
T PRK14042 168 C---DSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHS 206 (596)
T ss_pred C---CEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCC
Confidence 4 45555554444445556665666655411 346666554
No 82
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=48.47 E-value=80 Score=22.96 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec----CcCHHHHHHHhhcCCee
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS----EAFASTIRRAHTIHPIT 132 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s----~~~~~~l~~~~~~~~~~ 132 (183)
..+.+.+.+.+.+--+.+|++ ++++| +..--+.++.+.+..+ .+..|=+. +|..-.++.++....+-
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~~-v~~~Q------SN~EGelId~I~~a~~--~~dgiiINpga~THtSiAl~DAl~~~~~P 95 (146)
T PRK05395 25 STTLADIEALLEEEAAELGVE-LEFFQ------SNHEGELIDRIHEARD--GADGIIINPGAYTHTSVALRDALAAVSIP 95 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCCE-EEEEe------eCcHHHHHHHHHhccc--CCcEEEECchHHHHHHHHHHHHHHcCCCC
Confidence 568899999999999999985 88887 2223467888888753 45555554 45667788888887777
Q ss_pred EEeeecCcccCC
Q 044886 133 VVRLEWSLRSRD 144 (183)
Q Consensus 133 ~~q~~~~~~~~~ 144 (183)
++.+..|-...+
T Consensus 96 ~VEVHiSNi~aR 107 (146)
T PRK05395 96 VIEVHLSNIHAR 107 (146)
T ss_pred EEEEecCCcccc
Confidence 999998876655
No 83
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=47.40 E-value=1.4e+02 Score=24.88 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHc------C-CCeEeCcCCCCCCchHHHHHH-HHhhCCCCCC-CCCHHHHHHHHHHHHHHcCCCCc
Q 044886 9 KPESGMIALTNHAIDS------G-INVLDTSDVYGPHTNEILLGK-VIYEDGKYSY-CGDPAYLRAACEASLKRLDVDCI 79 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~------G-i~~~DtA~~Yg~g~sE~~~g~-~l~~~~k~~~-~~~~~~i~~~~~~sL~~lg~~~i 79 (183)
.+.+...++++..+.. | +..+|+.. |.+--. .+|+ +-|.. ...++.|+.+++...+ .+-=
T Consensus 118 ~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVN-------E~vdd~g~~R~-s~w~~~~~gpd~I~~aF~~Are---adP~ 186 (345)
T COG3693 118 LSKEALAKMVEEHIKTVVGRYKGSVASWDVVN-------EAVDDQGSLRR-SAWYDGGTGPDYIKLAFHIARE---ADPD 186 (345)
T ss_pred cChHHHHHHHHHHHHHHHHhccCceeEEEecc-------cccCCCchhhh-hhhhccCCccHHHHHHHHHHHh---hCCC
Confidence 5567777777777664 4 45566542 221100 2222 22333 5688999999998887 2322
Q ss_pred ceEEeccCCCCC---CHHHHHHHHHHHHHcCC-ccEEEecCc
Q 044886 80 DLYDQHRIDTKV---PIEVTIGELKRLVEEGK-IKHIDLSEA 117 (183)
Q Consensus 80 Dl~~lh~~~~~~---~~~~~~~~l~~l~~~G~-ir~iG~s~~ 117 (183)
--+++...+... .-..+++.+++|+++|. |..||+-+|
T Consensus 187 AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH 228 (345)
T COG3693 187 AKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSH 228 (345)
T ss_pred ceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeee
Confidence 234444443222 23457889999999999 999999863
No 84
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.88 E-value=19 Score=28.57 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 044886 4 FYGPSKPESGMIALTNHAIDSGI 26 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi 26 (183)
.|-+.++++++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 46667899999999999999997
No 85
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=46.64 E-value=1.1e+02 Score=26.25 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEe
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQ 84 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~l 84 (183)
|..+.+.+++.++..++ ++.+++.++.+
T Consensus 213 Pgqt~e~~~~~l~~~~~-l~~~~i~~y~l 240 (453)
T PRK09249 213 PKQTPESFARTLEKVLE-LRPDRLAVFNY 240 (453)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEccC
Confidence 45566666666666553 67677766654
No 86
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=46.35 E-value=1.2e+02 Score=23.93 Aligned_cols=56 Identities=23% Similarity=0.151 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHHhhCCCCCCCCCHHHHHHHHHHH
Q 044886 12 SGMIALTNHAIDSGINVLDTSDVYGPHT------NEILLGKVIYEDGKYSYCGDPAYLRAACEAS 70 (183)
Q Consensus 12 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~s 70 (183)
.-+.+-..+|+++|+++||++ .+|.|. .|.++ ..|... ......+.+.+.+..+..
T Consensus 197 GlA~AN~laAi~aGa~~vd~s-~~GlG~~aGN~~~E~lv-~~L~~~-g~~~~idl~~l~~~~~~~ 258 (263)
T cd07943 197 GLAVANSLAAVEAGATRIDGS-LAGLGAGAGNTPLEVLV-AVLERM-GIETGIDLYKLMDAAEDL 258 (263)
T ss_pred chHHHHHHHHHHhCCCEEEee-cccccCCcCCccHHHHH-HHHHhc-CCCCCCCHHHHHHHHHHH
Confidence 345566677889999999988 344322 35554 334332 233455666655554443
No 87
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=45.92 E-value=2.3e+02 Score=25.60 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCc--CCCC-----CCchHHHHHHHHhhCC---C----------CCCCCCHHHHH
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTS--DVYG-----PHTNEILLGKVIYEDG---K----------YSYCGDPAYLR 64 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg-----~g~sE~~~g~~l~~~~---k----------~~~~~~~~~i~ 64 (183)
|+..++.++..++.+..-+.|+..+++- ..+. .+.++...-+.+++.. + ..+..-++.+.
T Consensus 20 ~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 20 FATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred cccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHH
Confidence 5667899999999998888999988872 1121 2344444344454321 1 12233344433
Q ss_pred HHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 044886 65 AACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI 109 (183)
Q Consensus 65 ~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 109 (183)
+.+=+.....|++.+-++ +...+++....+++..|+.|+.
T Consensus 100 ~~~v~~a~~~Gid~~rif-----d~lnd~~~~~~ai~~ak~~G~~ 139 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVF-----DAMNDPRNLETALKAVRKVGAH 139 (593)
T ss_pred HHHHHHHHhcCCCEEEEe-----eeCCcHHHHHHHHHHHHHcCCe
Confidence 333333344565554444 2333355566677777777775
No 88
>PLN02943 aminoacyl-tRNA ligase
Probab=45.43 E-value=1.3e+02 Score=28.72 Aligned_cols=99 Identities=14% Similarity=0.073 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCeEeCcCCCCCCc-hHHHHHHHHhhCCCCCCCCCHHHH-----------HHHHHHHHHHcCCCCcceEEe
Q 044886 17 LTNHAIDSGINVLDTSDVYGPHT-NEILLGKVIYEDGKYSYCGDPAYL-----------RAACEASLKRLDVDCIDLYDQ 84 (183)
Q Consensus 17 ~l~~A~~~Gi~~~DtA~~Yg~g~-sE~~~g~~l~~~~k~~~~~~~~~i-----------~~~~~~sL~~lg~~~iDl~~l 84 (183)
++|...-.|++.+-..-.-.+|- .|..+.+.+.+.++...+.+++.+ ...+.+.+++||.. +|-
T Consensus 117 ~~Ry~rm~G~~vl~~~G~D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s-~Dw--- 192 (958)
T PLN02943 117 MVRYNRMKGRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGAS-CDW--- 192 (958)
T ss_pred HHHHHHhcCCeeecCCCCCcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-eec---
Confidence 34444556888654221111233 466677777655554455666554 46678889999963 332
Q ss_pred ccCCCC---CCHHHHHHHHHHHHHcCCcc-EEEecCcCH
Q 044886 85 HRIDTK---VPIEVTIGELKRLVEEGKIK-HIDLSEAFA 119 (183)
Q Consensus 85 h~~~~~---~~~~~~~~~l~~l~~~G~ir-~iG~s~~~~ 119 (183)
.+.-.+ .-...++.++.+|.++|+|- .--..||++
T Consensus 193 ~~~~~T~d~~~~~~v~~~F~~l~~~Gliyr~~~~V~wcp 231 (958)
T PLN02943 193 SRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSP 231 (958)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEecCceeccCC
Confidence 111111 11346899999999999973 344456654
No 89
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=45.33 E-value=2e+02 Score=27.22 Aligned_cols=70 Identities=16% Similarity=0.021 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------------------------CCcceEEeccCCCCCCH---HHHHHHHHHHHHcC
Q 044886 57 CGDPAYLRAACEASLKRLDV--------------------------DCIDLYDQHRIDTKVPI---EVTIGELKRLVEEG 107 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~--------------------------~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G 107 (183)
.....++.+.++.+|+.++. ....++++..|....+. ..+|+.+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 44555667777777776542 24677888887655443 46899999999999
Q ss_pred CccEEEecCcCHHHHHHHhhc
Q 044886 108 KIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 108 ~ir~iG~s~~~~~~l~~~~~~ 128 (183)
+ ++=+.+|+.+..+.+-.+
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 9 999999999888888665
No 90
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=45.25 E-value=1.8e+02 Score=24.12 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=26.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLDTS 32 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 32 (183)
.+++.++.++..++++..-++||..|+.+
T Consensus 17 ~~~~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 17 AVRHQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCEEEee
Confidence 45777899999999999999999999985
No 91
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=45.08 E-value=1.7e+02 Score=23.89 Aligned_cols=127 Identities=11% Similarity=0.076 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHHhhCCC---CCCCCCHHHHHHHHHHHHHHcCCCC
Q 044886 8 SKPESGMIALTNHAIDSGINVLDTSDVYGPHT------NEILLGKVIYEDGK---YSYCGDPAYLRAACEASLKRLDVDC 78 (183)
Q Consensus 8 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~~g~~l~~~~k---~~~~~~~~~i~~~~~~sL~~lg~~~ 78 (183)
.++.++..++++.+.+.|+..|--+ | |+ -..++. .+++.+. .........+.+ ..+.|...|+++
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~-~i~~~~~l~~i~itTNG~ll~~-~~~~L~~aGl~~ 117 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVA-RLGKLPGLEELSLTTNGSRLAR-FAAELADAGLKR 117 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHH-HHHhCCCCceEEEEeChhHHHH-HHHHHHHcCCCe
Confidence 3788999999999999999877633 3 22 122222 2333221 111222222333 556677778776
Q ss_pred cceEEeccCCCC--------CCHHHHHHHHHHHHHcCC--c--cEEEecCcCHHHHHHHhhc---CCeeEEeeecCcc
Q 044886 79 IDLYDQHRIDTK--------VPIEVTIGELKRLVEEGK--I--KHIDLSEAFASTIRRAHTI---HPITVVRLEWSLR 141 (183)
Q Consensus 79 iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~--i--r~iG~s~~~~~~l~~~~~~---~~~~~~q~~~~~~ 141 (183)
+. +-|+..++. ..++.+++.++.+++.|. | ..+.+...+.+.+..+++. .++++.-+++-|+
T Consensus 118 v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~~ie~mP~ 194 (329)
T PRK13361 118 LN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFIEEMPL 194 (329)
T ss_pred EE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEEEEecccC
Confidence 65 355655432 247789999999999885 2 2333333555666555444 3444444445443
No 92
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=44.74 E-value=75 Score=22.92 Aligned_cols=81 Identities=16% Similarity=0.172 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHhhcCCeeEE
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEE--GKIKHIDLSEAFASTIRRAHTIHPITVV 134 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iG~s~~~~~~l~~~~~~~~~~~~ 134 (183)
..+.+.+.+.+.+.-..+|++ ++++| +..-.+.++.+.+..++ |.|-.-|--++..-.+..++.....-++
T Consensus 24 ~~tl~~i~~~~~~~a~~~g~~-v~~~Q------SN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~v 96 (140)
T PF01220_consen 24 TTTLEDIEQKCKETAAELGVE-VEFFQ------SNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVV 96 (140)
T ss_dssp SSHHHHHHHHHHHHHHHTTEE-EEEEE-------SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EE
T ss_pred cCCHHHHHHHHHHHHHHCCCe-EEEEe------cCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEE
Confidence 567789999999999999976 88887 22345678888888654 4444444446677778888888666699
Q ss_pred eeecCcccCC
Q 044886 135 RLEWSLRSRD 144 (183)
Q Consensus 135 q~~~~~~~~~ 144 (183)
.+..|-...+
T Consensus 97 EVHiSNi~~R 106 (140)
T PF01220_consen 97 EVHISNIHAR 106 (140)
T ss_dssp EEESS-GGGS
T ss_pred EEEcCCcccc
Confidence 9998876655
No 93
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=44.66 E-value=1.6e+02 Score=23.39 Aligned_cols=117 Identities=11% Similarity=0.020 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeE-e-CcCCCCCCch-HHHHHHHHhhC--CCCCCCCCHHHHHHHHHHHHHHcCCCCcceEE
Q 044886 9 KPESGMIALTNHAIDSGINVL-D-TSDVYGPHTN-EILLGKVIYED--GKYSYCGDPAYLRAACEASLKRLDVDCIDLYD 83 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~-D-tA~~Yg~g~s-E~~~g~~l~~~--~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~ 83 (183)
.+.++..+.++.+.+.|++.| - ++-.+..... +..+....+.. .......+...+.+..-+.|++.|++.+-+-+
T Consensus 62 ~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~ 141 (296)
T TIGR00433 62 KKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNL 141 (296)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 456677777777788999754 2 2222221111 33333333211 11111112222334445567777877643322
Q ss_pred ecc------CCCCCCHHHHHHHHHHHHHcCCcc----EEEecCcCHHHHHHHh
Q 044886 84 QHR------IDTKVPIEVTIGELKRLVEEGKIK----HIDLSEAFASTIRRAH 126 (183)
Q Consensus 84 lh~------~~~~~~~~~~~~~l~~l~~~G~ir----~iG~s~~~~~~l~~~~ 126 (183)
=.+ .-....+++.+++++.+++.|.-- -+|+ +.+.+.+.+.+
T Consensus 142 E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~~~ 193 (296)
T TIGR00433 142 DTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIGLA 193 (296)
T ss_pred cCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHHHH
Confidence 111 112245778899999999998632 2565 44555544443
No 94
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=44.13 E-value=1.7e+02 Score=23.53 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHc-CCCeEeCcCC-CCCCchHHHHHHHHhhCCCCCCCCC------HHHHHHHHHHHHHHcCCC
Q 044886 6 GPSKPESGMIALTNHAIDS-GINVLDTSDV-YGPHTNEILLGKVIYEDGKYSYCGD------PAYLRAACEASLKRLDVD 77 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~-Gi~~~DtA~~-Yg~g~sE~~~g~~l~~~~k~~~~~~------~~~i~~~~~~sL~~lg~~ 77 (183)
|..++.++-.++++..++. |++.++.+.. .. +.|...-..+.+......... .....+.++..++ .|.+
T Consensus 13 ~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s--~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~A~~-~g~~ 89 (280)
T cd07945 13 GVSFSPSEKLNIAKILLQELKVDRIEVASARVS--EGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDWIKS-AGAK 89 (280)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCEEEecCCCCC--HHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHHHHH-CCCC
Q ss_pred CcceEE---------eccCCCCCCHHHHHHHHHHHHHcCCccEEEec------CcCHHHHHHHhh
Q 044886 78 CIDLYD---------QHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS------EAFASTIRRAHT 127 (183)
Q Consensus 78 ~iDl~~---------lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s------~~~~~~l~~~~~ 127 (183)
.+.++. -.+......++.+.+.++.+++.|.--.++++ ..+++.+.++.+
T Consensus 90 ~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~ 154 (280)
T cd07945 90 VLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVD 154 (280)
T ss_pred EEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHH
No 95
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=43.91 E-value=1.5e+02 Score=24.96 Aligned_cols=61 Identities=10% Similarity=0.008 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCC------------C-CHHH---HH-HHHHHHHHcCCccEEEecCcC
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTK------------V-PIEV---TI-GELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~------------~-~~~~---~~-~~l~~l~~~G~ir~iG~s~~~ 118 (183)
|..+.+.+++.++..++ |+.++|.+|.+.-...+ . +.++ .+ .+.+.|.+.|- .++++|||.
T Consensus 172 Pgqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 249 (390)
T PRK06582 172 SGQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKY-FRYEISNYA 249 (390)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC-ceeeceeee
Confidence 57788889999998886 78899999877532110 0 1111 22 34445556665 557888875
No 96
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=43.35 E-value=1.6e+02 Score=23.91 Aligned_cols=124 Identities=13% Similarity=0.081 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCCCeEe----------CcCCCCCCc--hHHHHHHHHhh----CC-----C--CCCCCCHHHHHHH
Q 044886 10 PESGMIALTNHAIDSGINVLD----------TSDVYGPHT--NEILLGKVIYE----DG-----K--YSYCGDPAYLRAA 66 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~D----------tA~~Yg~g~--sE~~~g~~l~~----~~-----k--~~~~~~~~~i~~~ 66 (183)
+.+.+.+..+.+.+.|+..|| +...+|.+- ....+.+.++. .. | ..++.+.+...+
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~- 142 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIE- 142 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHH-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHH-
Confidence 677888888888888999999 334454211 23344444432 11 1 112333444443
Q ss_pred HHHHHHHcCCCCcceEEeccCCCCCCH--HHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhcCCeeEEeee
Q 044886 67 CEASLKRLDVDCIDLYDQHRIDTKVPI--EVTIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTIHPITVVRLE 137 (183)
Q Consensus 67 ~~~sL~~lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~~~~~~~q~~ 137 (183)
+-+.|...| +|.+-+|.-...... ..-|+.+.++++.=.|--|+=.+ ++.+.+.+.++....+.+++-
T Consensus 143 ~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 143 FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 555677777 789999986443222 44599999999998887777776 788889998887667788773
No 97
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=43.15 E-value=31 Score=17.88 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHcCCC
Q 044886 12 SGMIALTNHAIDSGIN 27 (183)
Q Consensus 12 ~~~~~~l~~A~~~Gi~ 27 (183)
.+..++|..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 4677899999999976
No 98
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=43.03 E-value=96 Score=22.02 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 58 GDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 58 ~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
.+.+.+...+++.++.- -+.-.+=..|...+...+.+.|..+++.| +..+|+.+
T Consensus 81 v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 81 VTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 34455555555544322 23323335667788999999999999999 66788876
No 99
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=42.79 E-value=1.4e+02 Score=22.42 Aligned_cols=133 Identities=10% Similarity=0.018 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCCCC---CCCHHHHHHHHHHHHHHcCCC----Ccce
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKYSY---CGDPAYLRAACEASLKRLDVD----CIDL 81 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~~---~~~~~~i~~~~~~sL~~lg~~----~iDl 81 (183)
.+++++.+.++.+++.|++..|.-... --+.-..+|+.+.+ +.+.. -...+.+++.+......+..+ .---
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~~~~-l~p~m~~iG~~w~~-gei~va~~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~ 86 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELIEKG-LMAGMGVVGKLFED-GELFLPHVMMSADAMLAGIKVLTPEMEKAVETEVLGK 86 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHHHcC-CCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCe
Confidence 468899999999999998766532111 00133344544422 22211 123444566665555555421 1123
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCcCHHHHHHHhhcCCeeEEeeecCcccCC
Q 044886 82 YDQHRIDTKVPIEVTIGELKRLVEEGK-IKHIDLSEAFASTIRRAHTIHPITVVRLEWSLRSRD 144 (183)
Q Consensus 82 ~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~ 144 (183)
+++-.+..+.+.-...-.-.-++..|. |.++|.. .+++.+.+.+...+|+++.+.++....-
T Consensus 87 vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~~~pd~v~lS~~~~~~~ 149 (197)
T TIGR02370 87 VVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKKEKPLMLTGSALMTTTM 149 (197)
T ss_pred EEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEccccccCH
Confidence 344455433332222222234444553 5556644 4778888888888889998887655443
No 100
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=42.38 E-value=1.5e+02 Score=22.59 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=53.3
Q ss_pred cceEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccCC-c-HH--HH--hc
Q 044886 79 IDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSRD-V-KE--EM--EL 151 (183)
Q Consensus 79 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~-~~--~~--~~ 151 (183)
.++.++-.|-+.. -++.+.+|.+...+. ..+=|.++...+.++++....+++|+..+..--- . .. .+ ++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4555555553322 256677787777665 3333446778887888887889999987765321 1 11 23 89
Q ss_pred CCeEEEeccCCccc
Q 044886 152 GIGIVAYNLLECEF 165 (183)
Q Consensus 152 ~i~v~a~~~l~~G~ 165 (183)
|+.++..+.+..|+
T Consensus 196 gi~~~~~~~~~s~i 209 (229)
T cd00308 196 GIRVMVHGTLESSI 209 (229)
T ss_pred CCEEeecCCCCCHH
Confidence 99999988776554
No 101
>PRK11024 colicin uptake protein TolR; Provisional
Probab=42.15 E-value=91 Score=22.11 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
+.+.+...+...+.. ..+...+=..|...+...+.+.|..+++.| +..+++.+
T Consensus 86 ~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~t 138 (141)
T PRK11024 86 PEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLMT 138 (141)
T ss_pred CHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 445555555554443 234334446677788999999999999998 56677753
No 102
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.99 E-value=2.1e+02 Score=23.95 Aligned_cols=164 Identities=8% Similarity=0.024 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHH---HHHHHc---CCCeEeCcCCCCCCc---hHHHHHHHHhhCCCC--------CCCCCHHHHHH
Q 044886 3 AFYGPSKPESGMIALT---NHAIDS---GINVLDTSDVYGPHT---NEILLGKVIYEDGKY--------SYCGDPAYLRA 65 (183)
Q Consensus 3 ~~~g~~~~~~~~~~~l---~~A~~~---Gi~~~DtA~~Yg~g~---sE~~~g~~l~~~~k~--------~~~~~~~~i~~ 65 (183)
..++...+.+|..+.+ +..++. |.+.++---.-|.|+ +-..+.++++..... ....+...+..
T Consensus 124 ~g~~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~~~ 203 (354)
T PRK14460 124 MGFERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGIEK 203 (354)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCChH
Q ss_pred HHHHHHHHcCCCCcceEEeccCCC-----------CCCHHHHHHHHHHHHHcC----CccEEEec--CcCHHHHHHHhhc
Q 044886 66 ACEASLKRLDVDCIDLYDQHRIDT-----------KVPIEVTIGELKRLVEEG----KIKHIDLS--EAFASTIRRAHTI 128 (183)
Q Consensus 66 ~~~~sL~~lg~~~iDl~~lh~~~~-----------~~~~~~~~~~l~~l~~~G----~ir~iG~s--~~~~~~l~~~~~~ 128 (183)
.++ .|...+...+++ -||.+++ ..+++++++++.++..+. +|+++=+. |.+.+.++++.+.
T Consensus 204 ~i~-~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~ 281 (354)
T PRK14460 204 GLR-ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRL 281 (354)
T ss_pred HHH-HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHH
Q ss_pred ---CCeeEEeeecCcccCCcHHHH-------------hcCCeEEEeccCCccccCC
Q 044886 129 ---HPITVVRLEWSLRSRDVKEEM-------------ELGIGIVAYNLLECEFLSS 168 (183)
Q Consensus 129 ---~~~~~~q~~~~~~~~~~~~~~-------------~~~i~v~a~~~l~~G~l~~ 168 (183)
.+..+.-++||+......... ++|+.+....+.|.-+.+.
T Consensus 282 l~~~~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di~aa 337 (354)
T PRK14460 282 LSRTKCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDIKAA 337 (354)
T ss_pred HhcCCCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHhc
No 103
>PRK08609 hypothetical protein; Provisional
Probab=41.88 E-value=2.6e+02 Score=25.05 Aligned_cols=99 Identities=13% Similarity=0.055 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCC-----CCchHHHHHHH------HhhCC-CC------CCCCCHHHHHHHHHHHHHHcC
Q 044886 14 MIALTNHAIDSGINVLDTSDVYG-----PHTNEILLGKV------IYEDG-KY------SYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 14 ~~~~l~~A~~~Gi~~~DtA~~Yg-----~g~sE~~~g~~------l~~~~-k~------~~~~~~~~i~~~~~~sL~~lg 75 (183)
..++++.|.+.|++++=.++|.. .|.+...+-.. +++.. .. ..+..++....-.+..|+.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~~g~~d~~~~~L~~-- 428 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILPDGSLDYDDEVLAE-- 428 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecCCcchhhcHHHHHh--
Confidence 56699999999999998888863 12333222222 22211 10 0122222222223334444
Q ss_pred CCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 76 VDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 76 ~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
.||+ +.-+|++.. .+.+++++.+.++.+.|.+.-||=-.
T Consensus 429 ~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd 467 (570)
T PRK08609 429 LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPT 467 (570)
T ss_pred hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCC
Confidence 4555 667787532 34567788899999888887776443
No 104
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=41.04 E-value=1.8e+02 Score=22.93 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=26.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLDTS 32 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 32 (183)
.+|+.++.++..++++...++||..++.+
T Consensus 14 ~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 14 AVRHQFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCCeecCHHHHHHHHHHHHHcCCCEEEee
Confidence 36777899999999999999999999987
No 105
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.50 E-value=47 Score=23.77 Aligned_cols=27 Identities=7% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 90 KVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 90 ~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
..+..-+++.|..|.+.|.|+.+-+.+
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~ 75 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEG 75 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 455778999999999999999998765
No 106
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=40.34 E-value=2e+02 Score=23.34 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 65 AACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 65 ~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
....+.|...+...=|++..-..... ...++++++.+++.| ++-|++++.....+.+..+.
T Consensus 118 ~~~~~~l~~~~l~~~DvvI~IS~SG~--T~~vi~al~~Ak~~G-a~tI~IT~~~~s~La~~aD~ 178 (299)
T PRK05441 118 ELGAADLKAINLTAKDVVVGIAASGR--TPYVIGALEYARERG-ALTIGISCNPGSPLSKEADI 178 (299)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CeEEEEECCCCChhhHhCCE
Confidence 33455666666677899888776544 456899999999998 78999998776666665443
No 107
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=40.29 E-value=1.4e+02 Score=21.57 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHhhcCCeeEEe
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI-KHIDLSEAFASTIRRAHTIHPITVVR 135 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iG~s~~~~~~l~~~~~~~~~~~~q 135 (183)
++..-.+++++.+-|+..|.+.+|+-. +. ++..+.-+.-..+.+.+.+|.. +.|-+|....-.-..+-+...+-+.+
T Consensus 6 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~-~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIraa~ 83 (144)
T TIGR00689 6 DHAGLELKSEIIEHLKQKGHEVIDCGT-LY-DERVDYPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIRAAL 83 (144)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEcCC-CC-CCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 556677899999999999998888854 33 3346777888888999999998 88888888777777777776666666
Q ss_pred eecCcccCCcHH-HH---hcCCeEEEec
Q 044886 136 LEWSLRSRDVKE-EM---ELGIGIVAYN 159 (183)
Q Consensus 136 ~~~~~~~~~~~~-~~---~~~i~v~a~~ 159 (183)
+ .++.. .+ ..|..|+++.
T Consensus 84 ~------~d~~~A~~ar~hNnaNVl~lG 105 (144)
T TIGR00689 84 C------VDEYTAALARQHNDANVLCLG 105 (144)
T ss_pred E------CCHHHHHHHHHhcCCcEEEEC
Confidence 5 22222 22 5567777765
No 108
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=40.16 E-value=2e+02 Score=23.29 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=41.8
Q ss_pred HHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 69 ASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 69 ~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
..+.......=|++..-..... ...++++++.+++.| ++-|++++.....+.+..+.
T Consensus 117 ~dl~~~~l~~~DvvI~IS~SG~--T~~vi~al~~Ak~~G-a~tIaIT~~~~s~La~~aD~ 173 (291)
T TIGR00274 117 NDLQNIHLTKNDVVVGIAASGR--TPYVIAGLQYARSLG-ALTISIACNPKSAASEIADI 173 (291)
T ss_pred HHHHhcCCCCCCEEEEEeCCCC--cHHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCCE
Confidence 3355556667799988777544 456899999999997 78899998776666666544
No 109
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=40.08 E-value=1.4e+02 Score=21.46 Aligned_cols=53 Identities=2% Similarity=0.115 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCCcceEEeccCCCCCCHHHHHHHHHHHHHc
Q 044886 54 YSYCGDPAYLRAACEASLKRL--DVDCIDLYDQHRIDTKVPIEVTIGELKRLVEE 106 (183)
Q Consensus 54 ~~~~~~~~~i~~~~~~sL~~l--g~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 106 (183)
.........|++.+.++++.. .....|++++.......++.++.+.|.++.++
T Consensus 56 vg~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 56 FGKAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred cccchhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 334556677777887777766 34578999999987667788887777777766
No 110
>PRK05588 histidinol-phosphatase; Provisional
Probab=39.30 E-value=45 Score=26.13 Aligned_cols=99 Identities=9% Similarity=0.115 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCCCCc---------hHHHHHHHHhhC--CCC----CCCCCHHHHHHHHHHHHHHcC
Q 044886 11 ESGMIALTNHAIDSGINVLDTSDVYGPHT---------NEILLGKVIYED--GKY----SYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 11 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~---------sE~~~g~~l~~~--~k~----~~~~~~~~i~~~~~~sL~~lg 75 (183)
.....+.+++|.+.|++.+ .++|..... -+..+ +.+.+- -+. ..+..+. ....+++.|++..
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~~~-~~~~~~~~l~~~~ 91 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGMEKD-LIEENKELINKYE 91 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEecccCC-CHHHHHHHHhhCC
Confidence 4457899999999999998 777742110 11111 111111 111 1122232 3455667777777
Q ss_pred CCCcceEEeccCCCCC----------CHHH----HHHHHHHHHH-cCCccEEE
Q 044886 76 VDCIDLYDQHRIDTKV----------PIEV----TIGELKRLVE-EGKIKHID 113 (183)
Q Consensus 76 ~~~iDl~~lh~~~~~~----------~~~~----~~~~l~~l~~-~G~ir~iG 113 (183)
.||+ +.-+|..+... +.++ -++.+.++.+ .+++.-+|
T Consensus 92 ~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 92 FDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred CCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 6766 67889864211 2233 3467777776 45444433
No 111
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=39.07 E-value=1.6e+02 Score=21.87 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCCC----CCCCHHHHHHHHHHHHHHcCCCCcceEEe
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKYS----YCGDPAYLRAACEASLKRLDVDCIDLYDQ 84 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~----~~~~~~~i~~~~~~sL~~lg~~~iDl~~l 84 (183)
.+.+++.++++.+++.|++.+.....-. .....+...-+...... .-++.+.++..++ +|.+++
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~--~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~-----~Ga~~i----- 80 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP--GALEAIRALRKEFPEALIGAGTVLTPEQADAAIA-----AGAQFI----- 80 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH-----cCCCEE-----
Confidence 4788999999999999999998765433 33444333332222111 1234555544433 666544
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCCeeEEee
Q 044886 85 HRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHPITVVRL 136 (183)
Q Consensus 85 h~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~~~~~q~ 136 (183)
|.|... .++. +..++.|.---+|++ +.+++.++.+. ..+++++
T Consensus 81 ~~p~~~---~~~~---~~~~~~~~~~i~gv~--t~~e~~~A~~~-Gad~i~~ 123 (190)
T cd00452 81 VSPGLD---PEVV---KAANRAGIPLLPGVA--TPTEIMQALEL-GADIVKL 123 (190)
T ss_pred EcCCCC---HHHH---HHHHHcCCcEECCcC--CHHHHHHHHHC-CCCEEEE
Confidence 555322 2233 334444555567888 46677777654 3577776
No 112
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=38.75 E-value=52 Score=25.39 Aligned_cols=91 Identities=18% Similarity=0.067 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHHc-CCCeEeCcCCCCCCchHHHHHHHHhhCCC-----CCCCCCHHHHHHHHHHHHHHcCCCCcceEE
Q 044886 10 PESGMIALTNHAIDS-GINVLDTSDVYGPHTNEILLGKVIYEDGK-----YSYCGDPAYLRAACEASLKRLDVDCIDLYD 83 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k-----~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~ 83 (183)
+.+++..+.+...+. |+=|...++=|- +.....+..+...+ ...+.+.+.+.+-+ +. -.+|++|
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~----~~---~~ld~VQ 80 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPKVKVVGVFVNESIEEILEIA----EE---LGLDAVQ 80 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHH----Hh---cCCCEEE
Confidence 445554444443333 333334455554 33333333333221 12345555544433 33 3489999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc---CCccEEEecCc
Q 044886 84 QHRIDTKVPIEVTIGELKRLVEE---GKIKHIDLSEA 117 (183)
Q Consensus 84 lh~~~~~~~~~~~~~~l~~l~~~---G~ir~iG~s~~ 117 (183)
||...+ .+.+++++.+ .-++.+.++.-
T Consensus 81 lHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 81 LHGDED-------PEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred ECCCCC-------HHHHHHHHhhcCCceEEEEEeCCc
Confidence 999954 3444455554 58899999864
No 113
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=38.62 E-value=1.9e+02 Score=22.48 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=72.3
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhh-----------CCCC--------CCCCCHHHHHHHHHHHHH--
Q 044886 14 MIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYE-----------DGKY--------SYCGDPAYLRAACEASLK-- 72 (183)
Q Consensus 14 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~-----------~~k~--------~~~~~~~~i~~~~~~sL~-- 72 (183)
..+-+..|..+|++.++.+.-|+. ++|. +.++-.. .+.| +...+.+.+|++++...+
T Consensus 18 l~~r~~~a~~~gf~~vev~~p~~e-~a~~-~~~~~~~~~~~~~~~~a~~~~~d~~~~G~~svpg~~k~FR~~Ld~ai~yA 95 (264)
T KOG4518|consen 18 LLQRYGAAASAGFKLVEVSIPYTE-PAEK-LREAADEYHLKHTLINAPPGNWDDGFRGLASVPGAKKEFRKSLDTAIEYA 95 (264)
T ss_pred HHHHHHHHHhCCceEEEecCCCCC-hHHH-HHHhhhcchhhhhhccCCCCChhhhccCcccCCchHHHHHHHHHHHHHHH
Confidence 456788999999999999988872 2333 3332211 0112 234566779999998876
Q ss_pred -HcCCCCcceEEeccCCCCCC---HHHH-----HHHHHHHHHcCCccEEEecC---------cCHHHHHHHhhcCCeeEE
Q 044886 73 -RLDVDCIDLYDQHRIDTKVP---IEVT-----IGELKRLVEEGKIKHIDLSE---------AFASTIRRAHTIHPITVV 134 (183)
Q Consensus 73 -~lg~~~iDl~~lh~~~~~~~---~~~~-----~~~l~~l~~~G~ir~iG~s~---------~~~~~l~~~~~~~~~~~~ 134 (183)
.||+.+|.+.- ..+....+ ...+ --+.+.|+++.+|.-|-=-| .+.+....++....-+-+
T Consensus 96 kalgC~rIHlmA-G~~k~g~d~~~~~~ty~eNlr~AA~~l~~~kligliEPINkyt~PgY~ln~y~~Aa~Ilq~v~~~Nl 174 (264)
T KOG4518|consen 96 KALGCCRIHLMA-GIPKSGDDLENAHQTYSENLRFAAEKLKEHKLIGLIEPINKYTIPGYHLNNYEDAADILQMVQSNNL 174 (264)
T ss_pred HHhCCceEEEec-cCCCCCchHHHHHHHHHHHHHHHHHHhhhhceeeeecchhcccCcchhcCCHHHHHHHHHHhcCCce
Confidence 56776666532 23322122 2222 24456666666554432222 134444555555556677
Q ss_pred eeecCcccCC
Q 044886 135 RLEWSLRSRD 144 (183)
Q Consensus 135 q~~~~~~~~~ 144 (183)
|++|..++.+
T Consensus 175 qlq~D~fH~Q 184 (264)
T KOG4518|consen 175 QLQYDTFHAQ 184 (264)
T ss_pred ehhHHHHHHH
Confidence 8877766654
No 114
>PRK09061 D-glutamate deacylase; Validated
Probab=38.61 E-value=2.7e+02 Score=24.39 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHh---hCCCC----CCCC---CHHHHHHHHHHHHHHcCCCCcceE
Q 044886 13 GMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIY---EDGKY----SYCG---DPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 13 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~---~~~k~----~~~~---~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
++.++++.|++.|...|=+...|-.+.+...+-+.++ +.+.. ..+. ++.....++++.++.....-.-+.
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~av~~~i~lA~~~G~rv~ 249 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVDAYQELIAAAAETGAHMH 249 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHHHHHHHHHHHHHhCCCEE
Confidence 4778889999999999876555643344444444443 22211 0111 122223344444443321113356
Q ss_pred EeccCC-CCCCHHHHHHHHHHHHHcCCccEEEec
Q 044886 83 DQHRID-TKVPIEVTIGELKRLVEEGKIKHIDLS 115 (183)
Q Consensus 83 ~lh~~~-~~~~~~~~~~~l~~l~~~G~ir~iG~s 115 (183)
+.|--. ......+.++.+++++++|.--..-++
T Consensus 250 IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 250 ICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred EEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 667643 123467788999999999854333343
No 115
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=38.58 E-value=59 Score=26.32 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcc--e-EEeccCCCCCCHHHHHHHHHHHHHcCCccE
Q 044886 60 PAYLRAACEASLKRLDVDCID--L-YDQHRIDTKVPIEVTIGELKRLVEEGKIKH 111 (183)
Q Consensus 60 ~~~i~~~~~~sL~~lg~~~iD--l-~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 111 (183)
.+...+.+.+.+++||+. .| . +.=+.+ .....+++.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~-~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGIS-YDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCcc-ccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 345778889999999985 44 3 322222 345678999999999999866
No 116
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=37.99 E-value=1.5e+02 Score=21.37 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCC--ccEEEecCcCHHHHHHHhhcCCeeEE
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGK--IKHIDLSEAFASTIRRAHTIHPITVV 134 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~--ir~iG~s~~~~~~l~~~~~~~~~~~~ 134 (183)
..+.+++.+.+++.=+.+|.+ ++++|- ..--++++.+.+...++. |-.=|--+++.-.++.++....+-++
T Consensus 24 ~~Tl~di~~~~~~~a~~~g~~-v~~~QS------N~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~v 96 (146)
T COG0757 24 STTLEDIEADLEEEAAKLGVE-VEFRQS------NHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVV 96 (146)
T ss_pred cccHHHHHHHHHHHHHHcCce-EEEEec------CchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEE
Confidence 668899999999999999975 777761 223467899999988862 22222234666777888877777789
Q ss_pred eeecCcccCCc
Q 044886 135 RLEWSLRSRDV 145 (183)
Q Consensus 135 q~~~~~~~~~~ 145 (183)
.+..|-+..+.
T Consensus 97 EVHlSNihaRE 107 (146)
T COG0757 97 EVHLSNIHARE 107 (146)
T ss_pred EEEecCchhcc
Confidence 99888776553
No 117
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.62 E-value=2.1e+02 Score=22.81 Aligned_cols=127 Identities=9% Similarity=0.094 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeC---cC-------CCCCCchHHHHHHHHh---hCC------CCCCCCCHHHHHHHHHHH
Q 044886 10 PESGMIALTNHAIDSGINVLDT---SD-------VYGPHTNEILLGKVIY---EDG------KYSYCGDPAYLRAACEAS 70 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~Dt---A~-------~Yg~g~sE~~~g~~l~---~~~------k~~~~~~~~~i~~~~~~s 70 (183)
+.++..+..+.+.+.|+..||. .+ .|+ .+...+-+.++ +.. |..++. +.+ ..+.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~--~~~-~~~a~~ 174 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKLTPNV--TDI-VEIARA 174 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEeCCCc--hhH-HHHHHH
Confidence 5678888899999999998885 12 232 34444444443 321 122222 222 234455
Q ss_pred HHHcCCCCcceEE------eccCC--C-----------CCCHHHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhcCC
Q 044886 71 LKRLDVDCIDLYD------QHRID--T-----------KVPIEVTIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTIHP 130 (183)
Q Consensus 71 L~~lg~~~iDl~~------lh~~~--~-----------~~~~~~~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~~~ 130 (183)
+...|.|.++++- +|.-. + .....-.++.+.++++.=.+.-||... ++++.+.+++...
T Consensus 175 ~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~G- 253 (296)
T cd04740 175 AEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAG- 253 (296)
T ss_pred HHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-
Confidence 7778877665531 11100 0 000112467778888776788899887 5789999998765
Q ss_pred eeEEeeecCccc
Q 044886 131 ITVVRLEWSLRS 142 (183)
Q Consensus 131 ~~~~q~~~~~~~ 142 (183)
.+.+|+-=-++.
T Consensus 254 Ad~V~igra~l~ 265 (296)
T cd04740 254 ASAVQVGTANFV 265 (296)
T ss_pred CCEEEEchhhhc
Confidence 699998544333
No 118
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=37.44 E-value=2.7e+02 Score=24.05 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHHcCCCe---EeCcCCCCCCchHHHHHHHHhhCCCC---------CCCCCHHHHHHHHHHHHHHcCC
Q 044886 9 KPESGMIALTNHAIDSGINV---LDTSDVYGPHTNEILLGKVIYEDGKY---------SYCGDPAYLRAACEASLKRLDV 76 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~---~DtA~~Yg~g~sE~~~g~~l~~~~k~---------~~~~~~~~i~~~~~~sL~~lg~ 76 (183)
-+.+-....++.|+++|+.. ||.=. .-+|-+.-.++.++.+.. +|-++.+. ...+.+-|..||+
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfRiFDAlN---D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~-yv~~akel~~~g~ 170 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFRIFDALN---DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEY-YVELAKELLEMGV 170 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEEechhcc---chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHH-HHHHHHHHHHcCC
Confidence 46677889999999999965 55332 224677777777776642 23333333 3445666777887
Q ss_pred CCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCc
Q 044886 77 DCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEA 117 (183)
Q Consensus 77 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~ 117 (183)
| -+-+-+........+.++-+..+|++=- -.+-+-+|
T Consensus 171 D---SIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH 207 (472)
T COG5016 171 D---SICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTH 207 (472)
T ss_pred C---EEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecc
Confidence 4 4444444444445666776667766533 34444444
No 119
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.41 E-value=2.2e+02 Score=23.07 Aligned_cols=127 Identities=9% Similarity=0.031 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcC---------CCCCCc----hHHHHHHHHh---hCCCCC--------CCCCHHHHHH
Q 044886 10 PESGMIALTNHAIDSGINVLDTSD---------VYGPHT----NEILLGKVIY---EDGKYS--------YCGDPAYLRA 65 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~---------~Yg~g~----sE~~~g~~l~---~~~k~~--------~~~~~~~i~~ 65 (183)
+.++..+..+.+.+.|+..||.-- .|+ |. ..+++.+.++ +....+ ++..... ..
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~-~~ 150 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHIN-AV 150 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc-cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcch-HH
Confidence 678888999999999999888421 122 12 2233434333 211111 1111111 23
Q ss_pred HHHHHHHHcCCCCcceEEeccCCCCCC--HHHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhcCCeeEEeeecCcc
Q 044886 66 ACEASLKRLDVDCIDLYDQHRIDTKVP--IEVTIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTIHPITVVRLEWSLR 141 (183)
Q Consensus 66 ~~~~sL~~lg~~~iDl~~lh~~~~~~~--~~~~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~~~~~~~q~~~~~~ 141 (183)
.+.+.|+..|+ |.+.+|....... -...|+.+.++++.=.+--++... .+++.+.++++....+.+|+---++
T Consensus 151 ~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l 226 (319)
T TIGR00737 151 EAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGAL 226 (319)
T ss_pred HHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhh
Confidence 45556777775 5666675422111 123478888888877788788776 6788999999777788888854433
No 120
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=37.28 E-value=59 Score=26.50 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI 109 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 109 (183)
..-.+...+.+.+.+++||++ +|.+.- .........+.+.+++|+++|.+
T Consensus 65 ~e~~~~~~~~~~~~l~~LgI~-~D~~~~--tt~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 65 QELCDKYHEIFKDLFKWLNIS-FDYFIR--TTSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHHHHcCCc-CCCCee--CCCHHHHHHHHHHHHHHHHCCCE
Confidence 334456788889999999986 676432 11112345678999999999998
No 121
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=36.84 E-value=30 Score=24.63 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCeEeCcCCCC
Q 044886 16 ALTNHAIDSGINVLDTSDVYG 36 (183)
Q Consensus 16 ~~l~~A~~~Gi~~~DtA~~Yg 36 (183)
..+...++.|+|+||---.++
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~~ 50 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWDG 50 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEcC
Confidence 578899999999999554343
No 122
>TIGR00035 asp_race aspartate racemase.
Probab=36.73 E-value=1.9e+02 Score=22.15 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCC------------CCHHHHHHHHHHHHHcCCccEEEecCcCHHH
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTK------------VPIEVTIGELKRLVEEGKIKHIDLSEAFAST 121 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~ 121 (183)
+.+.+++=++..-.+.+-++++++.+++++-. .....+.+.++.|.+. .+..+-++.+++..
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHH
Confidence 33445666666666788889999999988431 1223456777777665 47999999876654
No 123
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=36.71 E-value=2.2e+02 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 044886 6 GPSKPESGMIALTNHAIDSGINVLDTS 32 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~Gi~~~DtA 32 (183)
|..++.++..++++...+.||+.|+.+
T Consensus 14 ~~~~s~e~K~~i~~~L~~~Gv~~IEvG 40 (274)
T cd07938 14 KTFIPTEDKIELIDALSAAGLRRIEVT 40 (274)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeC
Confidence 455788999999999999999999987
No 124
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.43 E-value=1e+02 Score=29.10 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCC--cceEEeccCCCCCC---HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 044886 67 CEASLKRLDVDC--IDLYDQHRIDTKVP---IEVTIGELKRLVEEGKIKHIDLSEAFASTIRRA 125 (183)
Q Consensus 67 ~~~sL~~lg~~~--iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~ 125 (183)
+.-+|..+=..+ +++++|.-|....+ .+.++++|..+... ++.|||-+|..+..+.+
T Consensus 828 lrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~e~~ 889 (908)
T COG0419 828 LRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELKERA 889 (908)
T ss_pred HHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHhC
Confidence 344444443344 99999999987766 45578888888888 88999999987766544
No 125
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=36.41 E-value=2.4e+02 Score=23.09 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCc----------CCCCC--CchHHHHHHHHh---hCC--CC------CCCCCHHHHHHH
Q 044886 10 PESGMIALTNHAIDSGINVLDTS----------DVYGP--HTNEILLGKVIY---EDG--KY------SYCGDPAYLRAA 66 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~--g~sE~~~g~~l~---~~~--k~------~~~~~~~~i~~~ 66 (183)
+.++..++.+.+.+.|+..||.= ..+|. ......+.+.++ +.. +. .++.+... ...
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~-~~~ 153 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRN-CVE 153 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcch-HHH
Confidence 67787888888888999999922 22221 011223333332 211 11 01111111 123
Q ss_pred HHHHHHHcCCCCcceEEeccCCCCCCH--HHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhcCCeeEEeee
Q 044886 67 CEASLKRLDVDCIDLYDQHRIDTKVPI--EVTIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTIHPITVVRLE 137 (183)
Q Consensus 67 ~~~sL~~lg~~~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~~~~~~~q~~ 137 (183)
+.+.+++.| +|.+.+|.-...... ..-|+.+.++++.=.|--||... .+++.+.++++....+.+|+-
T Consensus 154 ~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 154 IAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred HHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 344466667 467778875422111 12378888888887888888887 688999999987778888885
No 126
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.41 E-value=2.3e+02 Score=27.26 Aligned_cols=64 Identities=16% Similarity=0.042 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHc------CCCCcceEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhh
Q 044886 62 YLRAACEASLKRL------DVDCIDLYDQHRIDTKVPI---EVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHT 127 (183)
Q Consensus 62 ~i~~~~~~sL~~l------g~~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~ 127 (183)
..+-++...|..- |--.+|+++|.-|....+. ..+++.|.++.+.|+ .|||.+|.++....+..
T Consensus 956 ~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~--~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 956 TFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSK--MIGIISHVPEFRERIPH 1028 (1042)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCC--EEEEEeCcHHHHHhhCC
Confidence 3555665555431 2225899999999877664 457899999988765 79999999887766643
No 127
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=35.02 E-value=2.7e+02 Score=23.26 Aligned_cols=90 Identities=12% Similarity=0.144 Sum_probs=54.7
Q ss_pred eEEeccCCCC-----------CCHHHHHHHHHHHHH-cC---CccEEEec--CcCHHHHHHH---hhcCCeeEEeeecCc
Q 044886 81 LYDQHRIDTK-----------VPIEVTIGELKRLVE-EG---KIKHIDLS--EAFASTIRRA---HTIHPITVVRLEWSL 140 (183)
Q Consensus 81 l~~lh~~~~~-----------~~~~~~~~~l~~l~~-~G---~ir~iG~s--~~~~~~l~~~---~~~~~~~~~q~~~~~ 140 (183)
.+-||.+++. .+++++++++.++.+ .| +|+++=+. |.+.+.+.++ +...+..+.-++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 4778988632 236788888887654 33 23334333 3445555555 444556777889998
Q ss_pred ccCC----cH-HHH--------hcCCeEEEeccCCc------cccCCCC
Q 044886 141 RSRD----VK-EEM--------ELGIGIVAYNLLEC------EFLSSGP 170 (183)
Q Consensus 141 ~~~~----~~-~~~--------~~~i~v~a~~~l~~------G~l~~~~ 170 (183)
.... +. ..+ ++|+.+......|. |+|..+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaCGqL~~~~ 346 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAACGQLRAKD 346 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCCcchhhh
Confidence 6532 11 122 78999999888854 6775544
No 128
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=34.95 E-value=1.8e+02 Score=21.16 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHhhcCCeeEEe
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI-KHIDLSEAFASTIRRAHTIHPITVVR 135 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iG~s~~~~~~l~~~~~~~~~~~~q 135 (183)
++..-.+++.+.+-|+..|.+.+|+-. +..+...+.-+....+.+.+.+|.. +.|-+|....-.-..+-+...+-+.+
T Consensus 8 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIRAA~ 86 (148)
T PRK05571 8 DHAGFELKEEIIEHLEELGHEVIDLGP-DSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAANKVKGIRAAL 86 (148)
T ss_pred CCchHHHHHHHHHHHHHCCCEEEEcCC-CCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 566677899999999999998888753 3333246777888888888899987 88888887777766666666666665
Q ss_pred e
Q 044886 136 L 136 (183)
Q Consensus 136 ~ 136 (183)
+
T Consensus 87 ~ 87 (148)
T PRK05571 87 C 87 (148)
T ss_pred E
Confidence 5
No 129
>PRK10508 hypothetical protein; Provisional
Probab=34.85 E-value=67 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHH
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLV 104 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~ 104 (183)
-.+++.+.++|++..+++|+|.+ +++... .+.++.++.++.|.
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 46889999999999999998776 233332 34455555444443
No 130
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.79 E-value=1.5e+02 Score=20.33 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCC-----CCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc
Q 044886 42 ILLGKVIYEDGK-----YSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI 109 (183)
Q Consensus 42 ~~~g~~l~~~~k-----~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i 109 (183)
.++--+++-.+. .....++..++..++..|+.||.. |+...+.+..-+.+.+..++|+|
T Consensus 48 eFv~lf~r~RGnlKEvEr~lg~sYptvR~kld~vlramgy~---------p~~e~~~~i~~~~i~~qle~Gei 111 (122)
T COG3877 48 EFVELFLRCRGNLKEVERELGISYPTVRTKLDEVLRAMGYN---------PDSENSVNIGKKKIIDQLEKGEI 111 (122)
T ss_pred HHHHHHHHHccCHHHHHHHHCCccHHHHHHHHHHHHHcCCC---------CCCCChhhhhHHHHHHHHHcCCC
Confidence 445555554442 234778899999999999999963 44444444434445555566775
No 131
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=34.23 E-value=2.1e+02 Score=21.74 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=71.9
Q ss_pred CCCCCHHHHHHHHHHHHHc--CCCeEeCcCCCCCCchHHHHHHHHhhCCC-CCCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 6 GPSKPESGMIALTNHAIDS--GINVLDTSDVYGPHTNEILLGKVIYEDGK-YSYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~--Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k-~~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
|.|+++++...+.-.++.. |=.++|....-| |=.+-.......++ +..+.+ ++..+.+++-++++|++.+.++
T Consensus 14 ~~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtG---si~iE~a~~~p~~~v~AIe~~-~~a~~~~~~N~~~fg~~n~~vv 89 (187)
T COG2242 14 GGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTG---SITIEWALAGPSGRVIAIERD-EEALELIERNAARFGVDNLEVV 89 (187)
T ss_pred CCCCcHHHHHHHHHHhhCCCCCCEEEEeCCCcc---HHHHHHHHhCCCceEEEEecC-HHHHHHHHHHHHHhCCCcEEEE
Confidence 4568999998888888775 778999876555 32221112222222 222333 4456778888889987755555
Q ss_pred EeccCCC--------------CCCHHHHHHHHHH-HHHcCCccEEEecCcCHHHHH---HHhhcCCe-eEEeeecCccc
Q 044886 83 DQHRIDT--------------KVPIEVTIGELKR-LVEEGKIKHIDLSEAFASTIR---RAHTIHPI-TVVRLEWSLRS 142 (183)
Q Consensus 83 ~lh~~~~--------------~~~~~~~~~~l~~-l~~~G~ir~iG~s~~~~~~l~---~~~~~~~~-~~~q~~~~~~~ 142 (183)
-=..|+. ...+++++++..+ |+.-|++- +..-..+.+. +.++...+ +++|+..+-..
T Consensus 90 ~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV---~naitlE~~~~a~~~~~~~g~~ei~~v~is~~~ 165 (187)
T COG2242 90 EGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLV---ANAITLETLAKALEALEQLGGREIVQVQISRGK 165 (187)
T ss_pred eccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEE---EEeecHHHHHHHHHHHHHcCCceEEEEEeecce
Confidence 4333311 1235666665544 45555543 3323334333 33444444 88888776544
No 132
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=34.16 E-value=3.2e+02 Score=23.91 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCC---------CCCCCHHHHHHHHHHHHHHcCCCCcc
Q 044886 10 PESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKY---------SYCGDPAYLRAACEASLKRLDVDCID 80 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~---------~~~~~~~~i~~~~~~sL~~lg~~~iD 80 (183)
+.+-....++.|.++|+..|=...+-..-++-+...++.++.++. ++.++.+.+.+.+++ +..+|. |
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~-l~~~Ga---d 178 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKE-LVEMGA---D 178 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHH-HHHcCC---C
Confidence 456677788999999987655444332212333333455555432 345555666665555 456774 4
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcC
Q 044886 81 LYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAF 118 (183)
Q Consensus 81 l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~ 118 (183)
.+.|-+.-......++.+.+..+++... .-||+=.|+
T Consensus 179 ~I~IkDtaG~l~P~~v~~Lv~alk~~~~-~pi~~H~Hn 215 (468)
T PRK12581 179 SICIKDMAGILTPKAAKELVSGIKAMTN-LPLIVHTHA 215 (468)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhccC-CeEEEEeCC
Confidence 5555554444455666666666666543 346666554
No 133
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=33.73 E-value=31 Score=32.87 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHH
Q 044886 61 AYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIE 94 (183)
Q Consensus 61 ~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~ 94 (183)
..=++++......++-.++|||-|-.|+++.-+.
T Consensus 7 ~~eRe~la~iiqqWNaNRLDLF~lS~PtEdLefh 40 (1629)
T KOG1892|consen 7 DEEREKLADIIQQWNANRLDLFELSQPTEDLEFH 40 (1629)
T ss_pred hhHHHHHHHHHHHhcccccceeeccCCCccceee
Confidence 4457888999999999999999999887655433
No 134
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=33.64 E-value=2.9e+02 Score=23.15 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCc--CCCCCCchHHHHHHHHhhCC----CC---CCCCCHHHHHHHHHHHHHHcCCCCc
Q 044886 9 KPESGMIALTNHAIDSGINVLDTS--DVYGPHTNEILLGKVIYEDG----KY---SYCGDPAYLRAACEASLKRLDVDCI 79 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA--~~Yg~g~sE~~~g~~l~~~~----k~---~~~~~~~~i~~~~~~sL~~lg~~~i 79 (183)
.+.++..+.++.+.+.|++.|--. ..-- ...-..+.+.++... .. ....+.+.+ +.|++.|++.+
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~-~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l-----~~Lk~aGv~r~ 177 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEA-KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEY-----AELVELGLDGV 177 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCC-CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHH-----HHHHHcCCCEE
Confidence 688999999999999999976321 1111 011122333333211 11 112343333 67888888766
Q ss_pred ceEEeccC-----------CCCCCHHHHHHHHHHHHHcCC
Q 044886 80 DLYDQHRI-----------DTKVPIEVTIGELKRLVEEGK 108 (183)
Q Consensus 80 Dl~~lh~~-----------~~~~~~~~~~~~l~~l~~~G~ 108 (183)
-+.+ ... .....+++.+++++.+++.|.
T Consensus 178 ~i~l-ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~ 216 (371)
T PRK09240 178 TVYQ-ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI 216 (371)
T ss_pred EEEE-ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 5543 221 123468899999999999995
No 135
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=33.59 E-value=1.2e+02 Score=20.06 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCccEEEecC-----------cCHHHHHHHhhcCC-eeEEeeecCcccCC
Q 044886 97 IGELKRLVEEGKIKHIDLSE-----------AFASTIRRAHTIHP-ITVVRLEWSLRSRD 144 (183)
Q Consensus 97 ~~~l~~l~~~G~ir~iG~s~-----------~~~~~l~~~~~~~~-~~~~q~~~~~~~~~ 144 (183)
.+...+|+++|+++++.-.. -+.+.+.+++..-| +....++..++.+.
T Consensus 28 ~~~a~eLq~~G~~~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~VtpL~~H 87 (91)
T PF02426_consen 28 KARAQELQRQGKWRHLWRVVGRYANVSIFDVEDNDELHELLSSLPLFPYMDIEVTPLARH 87 (91)
T ss_pred HHHHHHHHHCCeeeEEEEecCCcceEEEEECCCHHHHHHHHHhCCCccceeeeEEecccC
Confidence 46778999999999864331 24677888877744 45566666655544
No 136
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=33.25 E-value=2.8e+02 Score=23.00 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEec
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQH 85 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh 85 (183)
|..+.+.+++.++.. .+++.+++.+|.+-
T Consensus 165 Pgqt~e~~~~tl~~~-~~l~p~~is~y~L~ 193 (353)
T PRK05904 165 PILKLKDLDEVFNFI-LKHKINHISFYSLE 193 (353)
T ss_pred CCCCHHHHHHHHHHH-HhcCCCEEEEEeeE
Confidence 345555555555533 34566666655543
No 137
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=32.95 E-value=17 Score=30.78 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.3
Q ss_pred CCccEEEecCcCHHHHHHHhhc
Q 044886 107 GKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 107 G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
|+||++||-=++++.+.++...
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~ 285 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAAST 285 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcC
Confidence 9999999999999999988766
No 138
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=32.75 E-value=1.9e+02 Score=21.71 Aligned_cols=66 Identities=12% Similarity=0.063 Sum_probs=39.3
Q ss_pred HHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEec-CcCHHHHHHHhhcCCeeEEeeecC
Q 044886 72 KRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLS-EAFASTIRRAHTIHPITVVRLEWS 139 (183)
Q Consensus 72 ~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s-~~~~~~l~~~~~~~~~~~~q~~~~ 139 (183)
.++|.+++=+.+-.. ++..--.+....|.++... .+..+|+- |.+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~~~-s~R~v~~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFAPK-SPRYVSPEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecCCC-CCCCCCHHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 356765555432221 1111113444555555443 46778886 667788888888888999999755
No 139
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=32.48 E-value=61 Score=21.22 Aligned_cols=21 Identities=14% Similarity=0.408 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeE
Q 044886 9 KPESGMIALTNHAIDSGINVL 29 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~ 29 (183)
+|.+.+.++++.++++||+-+
T Consensus 70 VP~~~a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 70 VPAEAAQEVADELVEAGIKGI 90 (96)
T ss_dssp S-HHHHHHHHHHHHHTT-SEE
T ss_pred cCHHHHHHHHHHHHHcCCCEE
Confidence 578899999999999999854
No 140
>PF11432 DUF3197: Protein of unknown function (DUF3197); InterPro: IPR024443 This domain, whose function is unknown, is found in bacterial proteins.; PDB: 1WN9_A 1WNA_A.
Probab=32.41 E-value=41 Score=23.02 Aligned_cols=31 Identities=16% Similarity=0.391 Sum_probs=21.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCeEeCc
Q 044886 1 MSAFYGPSKPESGMIALTNHAIDSGINVLDTS 32 (183)
Q Consensus 1 ~~~~~g~~~~~~~~~~~l~~A~~~Gi~~~DtA 32 (183)
||.-||. ..++...+++..+.+.|+++.+|-
T Consensus 50 FGPafG~-~G~~ALaELv~wl~~~G~~f~EaV 80 (113)
T PF11432_consen 50 FGPAFGP-EGERALAELVRWLQERGARFYEAV 80 (113)
T ss_dssp ESTTS-T-THHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cCcccCc-cHHHHHHHHHHHHHHcCCchhhee
Confidence 4556765 456677899999999999877753
No 141
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=32.32 E-value=41 Score=23.79 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCeEeCcC
Q 044886 15 IALTNHAIDSGINVLDTSD 33 (183)
Q Consensus 15 ~~~l~~A~~~Gi~~~DtA~ 33 (183)
...+..+++.|+|+||.--
T Consensus 31 ~~~i~~qL~~GvR~~dirv 49 (135)
T smart00148 31 VEGYIQALDHGCRCVELDC 49 (135)
T ss_pred HHHHHHHHHhCCCEEEEEc
Confidence 4678899999999999553
No 142
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=32.31 E-value=2.8e+02 Score=22.69 Aligned_cols=141 Identities=11% Similarity=0.046 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCC-----CchHHHHHHHHhhC-CC---C----CCCCCHHHHHHHHHHHHHHcCC
Q 044886 10 PESGMIALTNHAIDSGINVLDTSDVYGP-----HTNEILLGKVIYED-GK---Y----SYCGDPAYLRAACEASLKRLDV 76 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-----g~sE~~~g~~l~~~-~k---~----~~~~~~~~i~~~~~~sL~~lg~ 76 (183)
+.++..+.++.+.+.|++.|-.--..+. -.-....-+++++. +. . ....+.+... +-++.|.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~----~~~~~l~- 213 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAI----RLARALE- 213 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHH----HHHHHhC-
Confidence 4677888888899999998864321110 01122233444432 21 1 1123433332 2223332
Q ss_pred CCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccCC--cHH--HH--
Q 044886 77 DCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSRD--VKE--EM-- 149 (183)
Q Consensus 77 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~--~~~--~~-- 149 (183)
..++.++..|-+. +.++.+.++++.-.+. ..|=|.++++.+.++++....+++|+.....--- ... .+
T Consensus 214 -~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~ 288 (357)
T cd03316 214 -EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAE 288 (357)
T ss_pred -ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 2344555655332 2466777888876555 3333347889999999888889999986654311 111 23
Q ss_pred hcCCeEEEecc
Q 044886 150 ELGIGIVAYNL 160 (183)
Q Consensus 150 ~~~i~v~a~~~ 160 (183)
++|+.++..+-
T Consensus 289 ~~g~~~~~~~~ 299 (357)
T cd03316 289 AHGVRVAPHGA 299 (357)
T ss_pred HcCCeEeccCC
Confidence 88888877664
No 143
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.28 E-value=2.4e+02 Score=23.34 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHc
Q 044886 14 MIALTNHAIDSGINVLDTSDVYGPHT------NEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRL 74 (183)
Q Consensus 14 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~l 74 (183)
+.+-...|+++|.++||++ .+|.|. .|.++ +.-+...+....+.+.+.+..+..++-+
T Consensus 202 a~ANslaAi~aGa~~iD~S-l~G~G~~aGN~~~E~lv--~~l~~~g~~tgidl~~l~~~a~~~v~p~ 265 (333)
T TIGR03217 202 AVANSIAAIEAGATRIDAS-LRGLGAGAGNAPLEVFV--AVLDRLGWNTGCDLFKLMDAAEDIVRPL 265 (333)
T ss_pred HHHHHHHHHHhCCCEEEee-cccccccccCccHHHHH--HHHHhcCCCCCcCHHHHHHHHHHHHHhh
No 144
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=32.16 E-value=3.2e+02 Score=23.33 Aligned_cols=108 Identities=9% Similarity=-0.117 Sum_probs=69.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecC---c-CHHHHHHHhhcCCe
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSE---A-FASTIRRAHTIHPI 131 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~---~-~~~~l~~~~~~~~~ 131 (183)
...+++++.+.+.+.+..... ..+-+.+-...+..-...+.+.++.+++.|.--+++++| + +.+.++++.+.. +
T Consensus 52 ~~~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~g-l 129 (404)
T TIGR03278 52 DFIPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNG-V 129 (404)
T ss_pred CcCCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcC-C
Confidence 456788888888888876532 256666666655555677899999999999877777454 2 556666666542 4
Q ss_pred eEEeeecCcccCCcHHHH----------------hcCCeEEEeccCCccc
Q 044886 132 TVVRLEWSLRSRDVKEEM----------------ELGIGIVAYNLLECEF 165 (183)
Q Consensus 132 ~~~q~~~~~~~~~~~~~~----------------~~~i~v~a~~~l~~G~ 165 (183)
+.+++..+..++.....+ ..++.+++..|+.-|+
T Consensus 130 d~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e~~~v~~~ivlIPGi 179 (404)
T TIGR03278 130 REVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESCEVHAASVIIPGV 179 (404)
T ss_pred CEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHhcCCEEEEEEEeCCc
Confidence 666666665553221111 2356677777766664
No 145
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=31.79 E-value=3.1e+02 Score=23.07 Aligned_cols=113 Identities=15% Similarity=0.035 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCC--CchHHHHHHHHhh---CCCCC---CCC----CHHHHHHHHHHHHHHcCCCCc
Q 044886 12 SGMIALTNHAIDSGINVLDTSDVYGP--HTNEILLGKVIYE---DGKYS---YCG----DPAYLRAACEASLKRLDVDCI 79 (183)
Q Consensus 12 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~~~g~~l~~---~~k~~---~~~----~~~~i~~~~~~sL~~lg~~~i 79 (183)
++..++++.|++.|+.-|=+...|.. +.++..+-+.++. .+... ... ..+.+.+.++-+. +.|.
T Consensus 167 ~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~-~~g~--- 242 (415)
T cd01297 167 AKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSILEALDELLRLGR-ETGR--- 242 (415)
T ss_pred HHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHH-HhCC---
Confidence 45667788899999977755545533 3455555555543 22211 111 2223444443332 2343
Q ss_pred ceEEeccCCCC----CCHHHHHHHHHHHHHcCCccEEEecCcC---HHHHHHHhhc
Q 044886 80 DLYDQHRIDTK----VPIEVTIGELKRLVEEGKIKHIDLSEAF---ASTIRRAHTI 128 (183)
Q Consensus 80 Dl~~lh~~~~~----~~~~~~~~~l~~l~~~G~ir~iG~s~~~---~~~l~~~~~~ 128 (183)
-+...|.-... ....++++.+++++++|.--...++.+. ...+.++++.
T Consensus 243 r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~~ 298 (415)
T cd01297 243 PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMAH 298 (415)
T ss_pred CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHcC
Confidence 35566654322 3466778888888888853333344432 3445555443
No 146
>PRK10997 yieM hypothetical protein; Provisional
Probab=31.27 E-value=2.1e+02 Score=25.19 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCC---CCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecC--cCHHHHHHHhhc
Q 044886 62 YLRAACEASLKRLDV---DCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSE--AFASTIRRAHTI 128 (183)
Q Consensus 62 ~i~~~~~~sL~~lg~---~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~--~~~~~l~~~~~~ 128 (183)
.+...++..++.++. ..-|+++|-+.......++..+.+..+++++..|..|++- +....+.++.+.
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~ifD~ 469 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIFDH 469 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhcCe
Confidence 366666666667653 3578888888754444578899999999988888888773 444455565544
No 147
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=31.19 E-value=89 Score=27.13 Aligned_cols=91 Identities=20% Similarity=0.108 Sum_probs=53.9
Q ss_pred HHHHHHHHHHH-cCCCeEe--CcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCC
Q 044886 13 GMIALTNHAID-SGINVLD--TSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDT 89 (183)
Q Consensus 13 ~~~~~l~~A~~-~Gi~~~D--tA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~ 89 (183)
-..+++.+.+. .|.+..= ....+| ..+...+. +.+. ++..-.+...+.+.+.|++||++ +|.+. ....
T Consensus 25 ~~~Dv~~R~~r~~G~~v~~v~g~dd~g----~~i~~~a~-~~g~-~~~~~~~~~~~~~~~~l~~l~I~-~D~~~--~t~~ 95 (511)
T PRK11893 25 LAADVLARFKRLRGYDVFFLTGTDEHG----QKIQRKAE-EAGI-SPQELADRNSAAFKRLWEALNIS-YDDFI--RTTD 95 (511)
T ss_pred HHHHHHHHHHHhcCCcEEecCCCCCCC----hHHHHHHH-HcCC-CHHHHHHHHHHHHHHHHHHhCCC-cCCce--eCCC
Confidence 44566666665 4665433 223344 24443332 2222 22223455778899999999997 67542 2222
Q ss_pred CCCHHHHHHHHHHHHHcCCccEE
Q 044886 90 KVPIEVTIGELKRLVEEGKIKHI 112 (183)
Q Consensus 90 ~~~~~~~~~~l~~l~~~G~ir~i 112 (183)
......+.+.+.+|.++|.+-.-
T Consensus 96 ~~~~~~v~~~~~~L~~~G~iY~~ 118 (511)
T PRK11893 96 PRHKEAVQEIFQRLLANGDIYLG 118 (511)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEe
Confidence 22467789999999999997653
No 148
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=31.17 E-value=2.6e+02 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcC
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSD 33 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~ 33 (183)
++.+...+++++|-..|-+|+|-|.
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAa 48 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAA 48 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecC
Confidence 6889999999999999999999885
No 149
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=30.95 E-value=2e+02 Score=23.21 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCCcceEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhh
Q 044886 63 LRAACEASLKRLDVDCIDLYDQHRIDTKVPI---EVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHT 127 (183)
Q Consensus 63 i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~ 127 (183)
.++.+.-.+.-++ ..++++|..|....+. .++++.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 141 ~kqrl~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 141 MKQRLSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 4555555555554 3688888888766553 568999999999997 788899999999888754
No 150
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=30.83 E-value=1.2e+02 Score=18.70 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCC
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTK 90 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~ 90 (183)
..+.+.+.+.+.++.||. |+++++......
T Consensus 3 kre~i~~~iR~~fs~lG~--I~vLYvn~~eS~ 32 (62)
T PF15513_consen 3 KREEITAEIRQFFSQLGE--IAVLYVNPYESD 32 (62)
T ss_pred HHHHHHHHHHHHHHhcCc--EEEEEEcccccC
Confidence 467899999999999995 999998877543
No 151
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=30.77 E-value=3.2e+02 Score=22.91 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHh
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIY 49 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~ 49 (183)
.|..++.++..++++.-.++||..++.+... .+..|..+-+.+.
T Consensus 19 ~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~-~~~~~~e~i~~i~ 62 (378)
T PRK11858 19 PGVVFTNEEKLAIARMLDEIGVDQIEAGFPA-VSEDEKEAIKAIA 62 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-cChHHHHHHHHHH
Confidence 3566899999999999999999999976322 2345533334443
No 152
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=30.67 E-value=40 Score=22.00 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCccEEEecCc
Q 044886 94 EVTIGELKRLVEEGKIKHIDLSEA 117 (183)
Q Consensus 94 ~~~~~~l~~l~~~G~ir~iG~s~~ 117 (183)
.....+|..|+++|.|..+-+...
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 567899999999999998877664
No 153
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.65 E-value=65 Score=21.93 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCCcceEEeccC----CCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 64 RAACEASLKRLDVDCIDLYDQHRI----DTKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 64 ~~~~~~sL~~lg~~~iDl~~lh~~----~~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
|..+-+.|..... ++++..|+.. .+..+..-+++.|+.|.+.|.|+.+-+.+
T Consensus 10 R~~Il~~l~~~~~-~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~~~ 65 (120)
T PF01475_consen 10 RLAILELLKESPE-HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEFGD 65 (120)
T ss_dssp HHHHHHHHHHHSS-SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHcCCC-CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEcCC
Confidence 4444444554443 4555444432 34456778999999999999999998774
No 154
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.51 E-value=90 Score=22.99 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCCc----ceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 63 LRAACEASLKRLDVDCI----DLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 63 i~~~~~~sL~~lg~~~i----Dl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
.++.++..++++|.+.- +.+. ........+.++.+.|++|++.| ++-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLA-EAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 35667777777776521 1111 11111233456788899999887 55566777777777666655
No 155
>PF12728 HTH_17: Helix-turn-helix domain
Probab=30.24 E-value=1.1e+02 Score=17.19 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCccEEEecC---cCHHHHHHHhhc
Q 044886 97 IGELKRLVEEGKIKHIDLSE---AFASTIRRAHTI 128 (183)
Q Consensus 97 ~~~l~~l~~~G~ir~iG~s~---~~~~~l~~~~~~ 128 (183)
-..+.++.++|.+.++++.. ++.+.+.+.++.
T Consensus 15 ~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~~ 49 (51)
T PF12728_consen 15 RSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLER 49 (51)
T ss_pred HHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHHh
Confidence 45678899999999998754 677777777653
No 156
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=29.70 E-value=1e+02 Score=20.78 Aligned_cols=62 Identities=24% Similarity=0.375 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 63 LRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 63 i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
+..+.+..+...++-++|+=.+-+.|. ..+.-..+.++.+|+.|+ ++-++. .++++..+.+.
T Consensus 28 lw~~r~~~~~~~~~~~idLs~v~rvDS-aglALL~~~~~~~k~~g~--~~~L~~-~p~~L~tLa~L 89 (99)
T COG3113 28 LWSQREAQLKQLDTVRIDLSGVSRVDS-AGLALLLHLIRLAKKQGN--AVTLTG-VPEQLRTLAEL 89 (99)
T ss_pred HHHHHHHHccccCeEEEehhhcceech-HHHHHHHHHHHHHHHcCC--eeEEec-CcHHHHHHHHH
Confidence 566677777777888999988888874 345567889999999998 555554 45566555443
No 157
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=29.67 E-value=1.3e+02 Score=17.79 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHH
Q 044886 15 IALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKR 73 (183)
Q Consensus 15 ~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~ 73 (183)
.+++..|++.|+ ||.- .+.+-.-+++.| +.++..+.+.+.+..++
T Consensus 6 ~e~L~~A~~~GY--fd~P----R~~tl~elA~~l--------gis~st~~~~LRrae~k 50 (53)
T PF04967_consen 6 REILKAAYELGY--FDVP----RRITLEELAEEL--------GISKSTVSEHLRRAERK 50 (53)
T ss_pred HHHHHHHHHcCC--CCCC----CcCCHHHHHHHh--------CCCHHHHHHHHHHHHHH
Confidence 378999999994 5533 223445555554 45555555555555444
No 158
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=29.65 E-value=3.3e+02 Score=22.67 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcC-CCCcceEEeccCCCC-----------CCHHHHHHHHHH-HHHcC---CccEEEec--CcCHHHHH
Q 044886 62 YLRAACEASLKRLD-VDCIDLYDQHRIDTK-----------VPIEVTIGELKR-LVEEG---KIKHIDLS--EAFASTIR 123 (183)
Q Consensus 62 ~i~~~~~~sL~~lg-~~~iDl~~lh~~~~~-----------~~~~~~~~~l~~-l~~~G---~ir~iG~s--~~~~~~l~ 123 (183)
.+++-.+.-+++++ .+....+-||.+++. .+++++++++.+ +.+.| .|+++=+. |.+.+.++
T Consensus 195 ~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~ 274 (345)
T PRK14457 195 TIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAE 274 (345)
T ss_pred hHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHH
Confidence 33333333334443 344578889998542 346777877766 44445 35566555 45566655
Q ss_pred HHhh---cCCeeEEeeecCcccCC----c-HHH---H-----hcCCeEEEeccCCc------cccCCCC
Q 044886 124 RAHT---IHPITVVRLEWSLRSRD----V-KEE---M-----ELGIGIVAYNLLEC------EFLSSGP 170 (183)
Q Consensus 124 ~~~~---~~~~~~~q~~~~~~~~~----~-~~~---~-----~~~i~v~a~~~l~~------G~l~~~~ 170 (183)
++.+ ..+..+.-++||++... + ... + ++|+.+....+.|. |+|..++
T Consensus 275 ~La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~~ 343 (345)
T PRK14457 275 ELANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGLDANAACGQLRRNA 343 (345)
T ss_pred HHHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchhhccccchhcc
Confidence 5544 34557788899986421 1 112 2 77999988888754 6665443
No 159
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=29.48 E-value=3e+02 Score=22.03 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=49.6
Q ss_pred CCHH-HHHHHHHHHHHcCCCeEeCcCCCCC-CchH---HHHHHHHhhC---CC----C-CCCCCHHHHHHHHHHHHHHcC
Q 044886 9 KPES-GMIALTNHAIDSGINVLDTSDVYGP-HTNE---ILLGKVIYED---GK----Y-SYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 9 ~~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~-g~sE---~~~g~~l~~~---~k----~-~~~~~~~~i~~~~~~sL~~lg 75 (183)
.+++ +...+.+.|.++|..|+=|+..|+. |-+. +++-+.+++. ++ - .-=.+.+...+.++.--+.||
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~lg 222 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEILG 222 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHhC
Confidence 3445 4788999999999999999999974 3332 3444554321 11 1 123477888888888888999
Q ss_pred CCCcc
Q 044886 76 VDCID 80 (183)
Q Consensus 76 ~~~iD 80 (183)
.+|++
T Consensus 223 ~~~~~ 227 (257)
T PRK05283 223 ADWAD 227 (257)
T ss_pred hhhcC
Confidence 88776
No 160
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.45 E-value=3.1e+02 Score=23.04 Aligned_cols=61 Identities=16% Similarity=0.005 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 044886 14 MIALTNHAIDSGINVLDTSDVYGPHT------NEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDV 76 (183)
Q Consensus 14 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~ 76 (183)
+.+-.-.|+++|.++||++ ..|.|. -|.+ ..+|..........+.+.+.+..+...+.+|.
T Consensus 202 A~AN~laAv~aGa~~vd~t-v~GlGeraGNa~lE~v-v~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~ 268 (378)
T PRK11858 202 ATANALAGIEAGAKQVHTT-VNGLGERAGNAALEEV-VMALKYLYGIDLGIDTERLYELSRLVSKASGI 268 (378)
T ss_pred HHHHHHHHHHcCCCEEEEe-eccccccccCccHHHH-HHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCc
Confidence 4455567889999999988 345432 2433 34444322333456666666555555554543
No 161
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=29.35 E-value=71 Score=26.32 Aligned_cols=46 Identities=24% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCC--CCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 044886 62 YLRAACEASLKRLDV--DCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK 110 (183)
Q Consensus 62 ~i~~~~~~sL~~lg~--~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 110 (183)
...+.+.+.+++||+ ++-..+ ..........+++.+.+|.++|.|-
T Consensus 88 ~~~~~~~~~~~~lgi~~~~~~~~---~T~~~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 88 RYVDEQEEQFQRLGVWVDWENPY---KTMDPEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHhCceecCCCCe---ECCCHHHHHHHHHHHHHHHHCCCEe
Confidence 346677788899997 432233 2222244667899999999999986
No 162
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=29.22 E-value=1.3e+02 Score=24.73 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhc
Q 044886 92 PIEVTIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTI 128 (183)
Q Consensus 92 ~~~~~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~ 128 (183)
..+...+.+..+.++|.++-+|=|. .+|++|+.+.+.
T Consensus 271 ~p~~~a~~~~~f~~~g~vnIvGGCCGTTPeHIraia~~ 308 (311)
T COG0646 271 TPEYMAEALAEFAEEGGVNIVGGCCGTTPEHIRAIAEA 308 (311)
T ss_pred CHHHHHHHHHHHHHhCCceeeccccCCCHHHHHHHHHH
Confidence 3567789999999999999998775 789999988654
No 163
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=29.11 E-value=69 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCccEEEecCcCHHHH
Q 044886 98 GELKRLVEEGKIKHIDLSEAFASTI 122 (183)
Q Consensus 98 ~~l~~l~~~G~ir~iG~s~~~~~~l 122 (183)
+.+.+++++|| +++|++.-..+++
T Consensus 85 eeI~~~v~~GK-~AFGft~~hie~v 108 (117)
T PF10941_consen 85 EEIRKEVAEGK-KAFGFTAQHIEQV 108 (117)
T ss_pred HHHHHHHHcCC-eeeeccHHHHHHH
Confidence 45668889999 8999987555543
No 164
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=28.62 E-value=1.3e+02 Score=21.19 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCCcceEEeccCCCCC-CHHHHHHHHHHHHHcCCccEEEec
Q 044886 64 RAACEASLKRLDVDCIDLYDQHRIDTKV-PIEVTIGELKRLVEEGKIKHIDLS 115 (183)
Q Consensus 64 ~~~~~~sL~~lg~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iG~s 115 (183)
|..+.+.|+.+....+|+++++..+.-. ...++...++.|.+.-.|+-+-+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~ 106 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAIN 106 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEec
Confidence 4455666666666678999888876543 345666777777776345555544
No 165
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=5.3e+02 Score=24.65 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHcCCCeE-----eCcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHH-----------HHHHHHHHHHc
Q 044886 11 ESGMIALTNHAIDSGINVL-----DTSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYL-----------RAACEASLKRL 74 (183)
Q Consensus 11 ~~~~~~~l~~A~~~Gi~~~-----DtA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i-----------~~~~~~sL~~l 74 (183)
..-.--++|.-.=.|++.+ |.| |- ..|..|-+-+.+.++...+.+++.+ ...+.+.+++|
T Consensus 56 ~tl~D~l~RykRM~G~~vl~~pG~DhA---GI-aTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rL 131 (877)
T COG0525 56 YTLQDILARYKRMRGYNVLWPPGTDHA---GI-ATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRL 131 (877)
T ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCC---Cc-hHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333345555555688864 322 10 2677787778766766667776664 44577889999
Q ss_pred CCCCcceEEeccCCC-CC----CHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHH
Q 044886 75 DVDCIDLYDQHRIDT-KV----PIEVTIGELKRLVEEGKI-KHIDLSEAFASTIRRA 125 (183)
Q Consensus 75 g~~~iDl~~lh~~~~-~~----~~~~~~~~l~~l~~~G~i-r~iG~s~~~~~~l~~~ 125 (183)
|.+ +| |-.. .+ ....+-+++.+|.++|+| |.--+.||++.+=.++
T Consensus 132 G~S-~D-----WsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~TAi 182 (877)
T COG0525 132 GVS-VD-----WSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAI 182 (877)
T ss_pred CCC-cc-----cccccccCCHHHHHHHHHHHHHHHHCCceeecCCcccCCCccccch
Confidence 975 33 2211 11 134578999999999998 6677889987654333
No 166
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=28.42 E-value=3.2e+02 Score=25.80 Aligned_cols=53 Identities=21% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCCCCcceEEeccCCCC---CCHHHHHHHHHHHHHcCCcc-EEEecCcCH
Q 044886 63 LRAACEASLKRLDVDCIDLYDQHRIDTK---VPIEVTIGELKRLVEEGKIK-HIDLSEAFA 119 (183)
Q Consensus 63 i~~~~~~sL~~lg~~~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~ir-~iG~s~~~~ 119 (183)
....+.+.+++||.. +|. .+.-.+ .-.+.++.++.+|.++|+|- .--..+|++
T Consensus 120 ~~~~~~~~~~~lG~s-~Dw---~r~~~T~d~~~~~~v~~~F~~L~~~GlIy~~~~~v~wcp 176 (861)
T TIGR00422 120 SGGTIKNQIKRLGAS-LDW---SRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDP 176 (861)
T ss_pred HHHHHHHHHHHhCee-eec---CCCcCcCCHHHHHHHHHHHHHHHHCCCeeecCcccccCC
Confidence 356678889999964 662 221111 22456899999999999983 233345554
No 167
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.27 E-value=3.2e+02 Score=22.82 Aligned_cols=63 Identities=10% Similarity=-0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCeEeCcCCCCCCc-----hHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 044886 14 MIALTNHAIDSGINVLDTSDVYGPHT-----NEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVD 77 (183)
Q Consensus 14 ~~~~l~~A~~~Gi~~~DtA~~Yg~g~-----sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~ 77 (183)
+.+-.-.|+++|+++||++ ..|.|. +=+.+-.+|+.........+.+.+.+.-+...+.+|..
T Consensus 198 A~AN~laA~~aGa~~vd~s-~~GlGeraGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~ 265 (363)
T TIGR02090 198 ATANSIAGVKAGAEQVHVT-VNGIGERAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVK 265 (363)
T ss_pred HHHHHHHHHHCCCCEEEEE-eeccccccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcC
No 168
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=28.23 E-value=3e+02 Score=21.76 Aligned_cols=99 Identities=23% Similarity=0.162 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcceEEe-ccCCCC-CC----HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCCe
Q 044886 58 GDPAYLRAACEASLKRLDVDCIDLYDQ-HRIDTK-VP----IEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHPI 131 (183)
Q Consensus 58 ~~~~~i~~~~~~sL~~lg~~~iDl~~l-h~~~~~-~~----~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~~ 131 (183)
.+.+.+.+..++.+ +-|.+.||+-.- -+|... .+ ++.+...++.+++.-.+- +.+=++.++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 34455544444443 448888888632 234322 22 223444566666653333 77778999999999988633
Q ss_pred eEEeeecCcccCCcHH-HH--hcCCeEEEecc
Q 044886 132 TVVRLEWSLRSRDVKE-EM--ELGIGIVAYNL 160 (183)
Q Consensus 132 ~~~q~~~~~~~~~~~~-~~--~~~i~v~a~~~ 160 (183)
-++-+ +....+... .+ ++|..++++..
T Consensus 99 iINdi--sg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 99 IINDV--SGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEEeC--CCCCCChHHHHHHHHcCCCEEEECC
Confidence 33323 333222222 33 88999999764
No 169
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=28.18 E-value=74 Score=21.17 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 64 RAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 64 ~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
...|-.-|...|.||.=.+.-.. ..+++++.+.+++|.+.|+|..+.=+.
T Consensus 9 ~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 9 DLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 34455556677777766554332 467899999999999999999988553
No 170
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=28.15 E-value=1.7e+02 Score=20.23 Aligned_cols=53 Identities=28% Similarity=0.248 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 044886 58 GDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK 110 (183)
Q Consensus 58 ~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 110 (183)
.+...+.+.+...++.-....+-=-.+-.++...-.++.++.|.+|+++||+.
T Consensus 53 ~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 53 RDRSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred EecccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCc
Confidence 34456667777777666544441122334554445678999999999999985
No 171
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=28.10 E-value=3.9e+02 Score=23.00 Aligned_cols=132 Identities=12% Similarity=0.075 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHHc--CCCeEe-CcCCCCCCchH--HHHHHHHhhCC-CCCCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 9 KPESGMIALTNHAIDS--GINVLD-TSDVYGPHTNE--ILLGKVIYEDG-KYSYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~--Gi~~~D-tA~~Yg~g~sE--~~~g~~l~~~~-k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
.+.+...+-++...+. |++.|- +...+.. ..+ ..+-+.+++.+ .|.. .....+...+-+.+++.|+.++-+-
T Consensus 227 rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~-~~~~~~~l~~~l~~~~i~~~~-~~~~~~~~e~l~~l~~aG~~~v~iG 304 (472)
T TIGR03471 227 RSAESVIEEVKYALENFPEVREFFFDDDTFTD-DKPRAEEIARKLGPLGVTWSC-NARANVDYETLKVMKENGLRLLLVG 304 (472)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCC-CHHHHHHHHHHHhhcCceEEE-EecCCCCHHHHHHHHHcCCCEEEEc
Confidence 4667777778877775 777432 1222221 112 12233344332 1211 1111233444456666776654432
Q ss_pred EeccC--------CCCCCHHHHHHHHHHHHHcCCccEE----EecCcCHHHHHHHhhc---CCeeEEeeecCcccCCc
Q 044886 83 DQHRI--------DTKVPIEVTIGELKRLVEEGKIKHI----DLSEAFASTIRRAHTI---HPITVVRLEWSLRSRDV 145 (183)
Q Consensus 83 ~lh~~--------~~~~~~~~~~~~l~~l~~~G~ir~i----G~s~~~~~~l~~~~~~---~~~~~~q~~~~~~~~~~ 145 (183)
+ ... .-....+++.++++.+++.|.--.. |+-..+.+.+++.++. .+++.++ ++++.+-+
T Consensus 305 i-ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~--~~~l~P~P 379 (472)
T TIGR03471 305 Y-ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ--VSLAAPYP 379 (472)
T ss_pred C-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee--eeecccCC
Confidence 1 221 2223466788899999999865442 4444556666555443 3455444 44444443
No 172
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=28.09 E-value=90 Score=20.81 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCC
Q 044886 4 FYGPSKPESGMIALTNHAIDSGIN 27 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~ 27 (183)
.||+.++..++.++++..++.+|-
T Consensus 48 ~fg~~vtR~~av~l~qkll~~hVi 71 (92)
T cd04447 48 NFGPEVTRQQTVQLLKKFLKNHVI 71 (92)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCc
Confidence 478889999999999999998874
No 173
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=28.03 E-value=3.7e+02 Score=22.70 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=80.5
Q ss_pred CCCCCCHHHHHHHHHHHHH-cCCCeEeCcCCCCCC--chHHHHHHHHhhC-CC--C----CCCCCHHHHHHHHHHHHHHc
Q 044886 5 YGPSKPESGMIALTNHAID-SGINVLDTSDVYGPH--TNEILLGKVIYED-GK--Y----SYCGDPAYLRAACEASLKRL 74 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~g--~sE~~~g~~l~~~-~k--~----~~~~~~~~i~~~~~~sL~~l 74 (183)
||...+.++..+.++.+.+ .|++.|=.-- |.. ..+...-+++++. +. . ....+++.. .+.++.|
T Consensus 163 ~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A----~~~~~~l 236 (395)
T cd03323 163 WGEALTPEGVVRLARAAIDRYGFKSFKLKG--GVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETA----IRLAKEL 236 (395)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCcEEEEec--CCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHH----HHHHHhc
Confidence 3333466777777777775 6999875321 111 1222223444432 11 1 112344332 2233344
Q ss_pred CCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccCC--c-HH-HH
Q 044886 75 DVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSRD--V-KE-EM 149 (183)
Q Consensus 75 g~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~--~-~~-~~ 149 (183)
. - ++.++-.|- + -++.+.+|++...+- +.|=|.++...+..+++....+++|+.....--- . .. .+
T Consensus 237 ~--~-~l~~iEeP~---~---d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~ 307 (395)
T cd03323 237 E--G-VLAYLEDPC---G---GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQV 307 (395)
T ss_pred C--c-CCCEEECCC---C---CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHH
Confidence 3 2 555555543 2 477888888887665 5555557788899999888899999887654311 1 11 23
Q ss_pred --hcCCeEEEeccC
Q 044886 150 --ELGIGIVAYNLL 161 (183)
Q Consensus 150 --~~~i~v~a~~~l 161 (183)
.+|+.+...+..
T Consensus 308 A~~~gi~~~~h~~~ 321 (395)
T cd03323 308 CETWGLGWGMHSNN 321 (395)
T ss_pred HHHcCCeEEEecCc
Confidence 889998887765
No 174
>PRK08084 DNA replication initiation factor; Provisional
Probab=27.79 E-value=2.8e+02 Score=21.39 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHcC--CCeEeCcCCCCCCchHHH--HHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEecc
Q 044886 11 ESGMIALTNHAIDSG--INVLDTSDVYGPHTNEIL--LGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQHR 86 (183)
Q Consensus 11 ~~~~~~~l~~A~~~G--i~~~DtA~~Yg~g~sE~~--~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~ 86 (183)
...+...++...+.. -+.+=+++ -|.|.+-.. ++..+...+......+.+.......+.++.+ +..|++.|..
T Consensus 29 n~~a~~~l~~~~~~~~~~~l~l~Gp-~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~dlliiDd 105 (235)
T PRK08084 29 NDSLLAALQNALRQEHSGYIYLWSR-EGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGM--EQLSLVCIDN 105 (235)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECC-CCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHh--hhCCEEEEeC
Confidence 455667777665432 22231221 134555433 3443333333222233333333333334443 2368998877
Q ss_pred CCCCCC----HHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 044886 87 IDTKVP----IEVTIGELKRLVEEGKIKHIDLSEAFASTI 122 (183)
Q Consensus 87 ~~~~~~----~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l 122 (183)
.+.... -++.++.+..+.+.|+++-|..|+..+..+
T Consensus 106 i~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 106 IECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 754221 234578888999999999999998777663
No 175
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=27.65 E-value=2.1e+02 Score=19.80 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=27.1
Q ss_pred HHHHHHHhhCCCC-----CCCCCHHHHHHHHHHHHHHcCC
Q 044886 42 ILLGKVIYEDGKY-----SYCGDPAYLRAACEASLKRLDV 76 (183)
Q Consensus 42 ~~~g~~l~~~~k~-----~~~~~~~~i~~~~~~sL~~lg~ 76 (183)
.++..+++..|.. ....|+..+|..+++.++.||.
T Consensus 40 ~Fi~~Fi~~rGnlKe~e~~lgiSYPTvR~rLd~ii~~lg~ 79 (113)
T PF09862_consen 40 EFIKLFIKNRGNLKEMEKELGISYPTVRNRLDKIIEKLGY 79 (113)
T ss_pred HHHHHHHHhcCCHHHHHHHHCCCcHHHHHHHHHHHHHhCC
Confidence 4566666655542 3578999999999999999996
No 176
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=27.46 E-value=3.6e+02 Score=22.44 Aligned_cols=162 Identities=10% Similarity=0.019 Sum_probs=82.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCC------CC-----------------------
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGK------YS----------------------- 55 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k------~~----------------------- 55 (183)
.|..++.++..++++.--+.||..|+.+.. ..++.|..+-+.+.+..+ +.
T Consensus 16 ~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p-~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 16 PGVAFTAAEKLAIARALDEAGVDELEVGIP-AMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIP 94 (365)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEc
Confidence 466789999999999999999999998722 123455333344432110 00
Q ss_pred ---------CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEecC----cCHHH
Q 044886 56 ---------YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTK-VPIEVTIGELKRLVEEGKIKHIDLSE----AFAST 121 (183)
Q Consensus 56 ---------~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iG~s~----~~~~~ 121 (183)
...+.+++.+.+.++.+...-.-+. +.+...+.. .+.+.+.+..+.+.+.| +..|.++. ..|..
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~-v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~i~l~DT~G~~~P~~ 172 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLF-VSVGGEDASRADPDFLVELAEVAAEAG-ADRFRFADTVGILDPFS 172 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE-EEEeecCCCCCCHHHHHHHHHHHHHcC-cCEEEEcccCCCCCHHH
Confidence 1123333333333333322111111 223333322 34555666666666665 55666664 34555
Q ss_pred HHHHhhcC--CeeEEeeecCcccCCcHH------HHhcCCeEEEeccCCccccCCCC
Q 044886 122 IRRAHTIH--PITVVRLEWSLRSRDVKE------EMELGIGIVAYNLLECEFLSSGP 170 (183)
Q Consensus 122 l~~~~~~~--~~~~~q~~~~~~~~~~~~------~~~~~i~v~a~~~l~~G~l~~~~ 170 (183)
+.+++... .+. +.+.+|.-+..... .++.|+..+--+..|-|--+|+.
T Consensus 173 v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~ 228 (365)
T TIGR02660 173 TYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNA 228 (365)
T ss_pred HHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccC
Confidence 55554431 111 23344433322111 22778887777777777666554
No 177
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=27.12 E-value=1.3e+02 Score=25.13 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHH
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGK 46 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~ 46 (183)
|.+..+.++-.+.++.+.+.|+..+-|+=+++.+..|..+..
T Consensus 9 fp~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~ 50 (360)
T COG3589 9 FPNRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHR 50 (360)
T ss_pred ccCCCcchhHHHHHHHHHHcCccceeeecccCCchHHHHHHH
Confidence 445556778889999999999999999999997776644433
No 178
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=27.12 E-value=3.4e+02 Score=21.99 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHHHcCC--------------------------CCcceEEeccCCCCCC---HHHHHHHHHHHHHcC
Q 044886 57 CGDPAYLRAACEASLKRLDV--------------------------DCIDLYDQHRIDTKVP---IEVTIGELKRLVEEG 107 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~--------------------------~~iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G 107 (183)
.....++++.++.-|+++++ ..++++.|..|....+ .+-.-+++.+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 45566677777777776643 2356666666643322 344568889999999
Q ss_pred CccEEEecCcCHHHHHHHhhc
Q 044886 108 KIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 108 ~ir~iG~s~~~~~~l~~~~~~ 128 (183)
. .|=+|+|..++++++-+.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 8 899999999999988655
No 179
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=27.03 E-value=1.3e+02 Score=26.15 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRR 124 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~ 124 (183)
...+.+...+.+.++|+.||++ .|-+ ...+...+..-+++++|+++|++ +.=.| +.+.+++
T Consensus 46 ~~Rs~~~~~~~I~e~L~wLGI~-~De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~ 106 (445)
T PRK12558 46 LERSKQEYADAIAEDLKWLGIN-WDRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELEL 106 (445)
T ss_pred cccchHHHHHHHHHHHHHcCCC-CCcc----ccHHHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHH
Confidence 4556788999999999999997 5742 22223344567889999999995 33333 3455543
No 180
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=26.99 E-value=2.1e+02 Score=23.48 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHHHcCCC
Q 044886 58 GDPAYLRAACEASLKRLDVD 77 (183)
Q Consensus 58 ~~~~~i~~~~~~sL~~lg~~ 77 (183)
.+++.+.++|++..+.+|++
T Consensus 286 GtPe~V~e~i~~~~~~~G~d 305 (337)
T TIGR03858 286 GSPETVAEKIADTIETLGLD 305 (337)
T ss_pred eCHHHHHHHHHHHHHHcCCC
Confidence 35666666666665556644
No 181
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=26.73 E-value=2.5e+02 Score=20.27 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHhhcCCeeEEe
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI-KHIDLSEAFASTIRRAHTIHPITVVR 135 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iG~s~~~~~~l~~~~~~~~~~~~q 135 (183)
++..-.+++.+.+-|+..|.+.+|+-- +...+..+.-..+.+.+.+|.. +.|-+|....-.-..+-+...+-+.+
T Consensus 8 DhaG~~lK~~l~~~L~~~G~eV~D~G~----~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaANK~~GIRAA~ 83 (142)
T PRK08621 8 DKAGFELKEVVKDYLEDNKYEVVDVTE----EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIKGMVAAE 83 (142)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEECCC----CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhhcCCCeEEEE
Confidence 566677899999999999988888743 3346677788888888888886 78888887766655555555565555
Q ss_pred e
Q 044886 136 L 136 (183)
Q Consensus 136 ~ 136 (183)
+
T Consensus 84 ~ 84 (142)
T PRK08621 84 V 84 (142)
T ss_pred E
Confidence 5
No 182
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.70 E-value=3.7e+02 Score=22.29 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCC--CCcceEEecc-CCCCCCHHHHHHHHHHHHH-cCC---ccEEEecCc-CHHHHHHHhh
Q 044886 56 YCGDPAYLRAACEASLKRLDV--DCIDLYDQHR-IDTKVPIEVTIGELKRLVE-EGK---IKHIDLSEA-FASTIRRAHT 127 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~--~~iDl~~lh~-~~~~~~~~~~~~~l~~l~~-~G~---ir~iG~s~~-~~~~l~~~~~ 127 (183)
...++++|.+++.......|+ ..++-+.+-. -+|....+.+++++..+.+ .|. -+.+.+|+. ....++++.+
T Consensus 119 r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~ 198 (343)
T PRK14468 119 RNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAE 198 (343)
T ss_pred CCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHH
Confidence 467889999998877766654 3466666655 4555667889999988844 343 267888874 3556667765
Q ss_pred cC
Q 044886 128 IH 129 (183)
Q Consensus 128 ~~ 129 (183)
..
T Consensus 199 ~~ 200 (343)
T PRK14468 199 ED 200 (343)
T ss_pred hC
Confidence 43
No 183
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=26.67 E-value=79 Score=22.43 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYG 36 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 36 (183)
-+.+++-++++.|+++|.+-.+-+..||
T Consensus 80 ~s~eevd~~v~ka~eaGGk~~~~~~d~g 107 (133)
T COG3607 80 GSREEVDELVDKALEAGGKPANEPQDEG 107 (133)
T ss_pred CcHHHHHHHHHHHHHcCCCCCCCccccc
Confidence 3688999999999999998755444443
No 184
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=26.24 E-value=54 Score=26.28 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCCeEeCc
Q 044886 16 ALTNHAIDSGINVLDTS 32 (183)
Q Consensus 16 ~~l~~A~~~Gi~~~DtA 32 (183)
..+..+++.|+|+||--
T Consensus 38 ~~~~~qL~~G~R~lDir 54 (274)
T cd00137 38 EMYRQQLLSGCRCVDIR 54 (274)
T ss_pred HHHHHHHHcCCcEEEEE
Confidence 67889999999999843
No 185
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=26.15 E-value=3.5e+02 Score=22.39 Aligned_cols=65 Identities=8% Similarity=-0.080 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccC--Cc-HH-HH--hcCCeEEEeccC
Q 044886 97 IGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSR--DV-KE-EM--ELGIGIVAYNLL 161 (183)
Q Consensus 97 ~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~--~~-~~-~~--~~~i~v~a~~~l 161 (183)
++.+.+|++...+. ..|=|.++...+..++....++++|+.....-- +. .. ++ .+|+.+...+..
T Consensus 203 ~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 203 QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 77788888887665 556666888999999988889999998765321 11 11 33 888888776543
No 186
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=26.12 E-value=3.3e+02 Score=21.54 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCc---cEEEecC--cCHHHHHHHhhc
Q 044886 93 IEVTIGELKRLVEEGKI---KHIDLSE--AFASTIRRAHTI 128 (183)
Q Consensus 93 ~~~~~~~l~~l~~~G~i---r~iG~s~--~~~~~l~~~~~~ 128 (183)
.+.+++.++.+++.|+. |.+=+-. .+.+.++++.+.
T Consensus 158 ~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~i~~i~~~ 198 (260)
T COG1180 158 NEPVLENLELLADLGVHVEIRTLVIPGYNDDEEEIRELAEF 198 (260)
T ss_pred cHHHHHHHHHHHcCCCeEEEEEEEECCCCCCHHHHHHHHHH
Confidence 46688888888887764 3333333 356666666544
No 187
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=26.08 E-value=72 Score=23.13 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeE
Q 044886 9 KPESGMIALTNHAIDSGINVL 29 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~ 29 (183)
++.+++.++++.|.+.|+=.-
T Consensus 34 mspdqAk~li~~A~~eGLl~~ 54 (144)
T PF09999_consen 34 MSPDQAKRLIDEAIEEGLLEE 54 (144)
T ss_pred CCHHHHHHHHHHHHHCCCeee
Confidence 789999999999999998543
No 188
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=26.01 E-value=3.8e+02 Score=22.19 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHH--------------------HhhCCCC----CCCCCHHHHH
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKV--------------------IYEDGKY----SYCGDPAYLR 64 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~--------------------l~~~~k~----~~~~~~~~i~ 64 (183)
++.++...+.+.+-+.|+.+|=|. +.- .+=.++-+. +.+.+|- .---+.++|.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stp-fd~--~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGmatl~Ei~ 149 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTP-FDL--ESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMATLEEIE 149 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEe-CCH--HHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCCCHHHHH
Confidence 567888899999999999988443 221 111111111 1112221 1124778888
Q ss_pred HHHHHHHHHcCCCCcceEEeccCCC-CCCHHH-HHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc-CCeeEEeeecCc
Q 044886 65 AACEASLKRLDVDCIDLYDQHRIDT-KVPIEV-TIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI-HPITVVRLEWSL 140 (183)
Q Consensus 65 ~~~~~sL~~lg~~~iDl~~lh~~~~-~~~~~~-~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~-~~~~~~q~~~~~ 140 (183)
.+++...+ -|.+.-++.++|+... ..+.++ -+.++..|++.=. .-||+|.|+.......... -.-+++.-++.+
T Consensus 150 ~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAvalGA~iIEkH~tl 226 (329)
T TIGR03569 150 AAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVALGATVIEKHFTL 226 (329)
T ss_pred HHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHHcCCCEEEeCCCh
Confidence 88888754 3532226999999853 333333 2677777776543 4799999876543333222 223455555554
No 189
>PF14615 Rsa3: Ribosome-assembly protein 3
Probab=25.99 E-value=51 Score=19.00 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHcCCCeEe
Q 044886 12 SGMIALTNHAIDSGINVLD 30 (183)
Q Consensus 12 ~~~~~~l~~A~~~Gi~~~D 30 (183)
+....++-.|++.|.+.||
T Consensus 29 ~~sl~~Li~aL~~G~~~F~ 47 (47)
T PF14615_consen 29 DKSLPLLIDALQQGTDMFS 47 (47)
T ss_pred chhHHHHHHHHHhcccccC
Confidence 3556788899999999885
No 190
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=25.93 E-value=1.3e+02 Score=21.90 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=35.6
Q ss_pred CCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhh
Q 044886 77 DCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHT 127 (183)
Q Consensus 77 ~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~ 127 (183)
+.=|++.+-..... ..+++++++.+++.| ++-|++++.....+.+..+
T Consensus 100 ~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~aD 147 (177)
T cd05006 100 QPGDVLIGISTSGN--SPNVLKALEAAKERG-MKTIALTGRDGGKLLELAD 147 (177)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhCC
Confidence 44577777665433 468899999999998 9999999876655665543
No 191
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=25.89 E-value=1.1e+02 Score=24.83 Aligned_cols=51 Identities=18% Similarity=0.080 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK 110 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 110 (183)
-.+...+.+.+.+++||+. +|....-........+-+.+.+.+|.+.|.|-
T Consensus 67 ~~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy 117 (314)
T cd00812 67 WTEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAY 117 (314)
T ss_pred HHHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 3456788889999999985 57421111111122345677888999999984
No 192
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=25.71 E-value=1.9e+02 Score=25.03 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=52.8
Q ss_pred HHHHHHHHHH-cCCCeEeCcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCC
Q 044886 14 MIALTNHAID-SGINVLDTSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVP 92 (183)
Q Consensus 14 ~~~~l~~A~~-~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~ 92 (183)
..+++.+.+. .|++.+-.-..-. ...+++-++.+ .+. .+..-.+...+.+.+.+++||+...|.+ +-....
T Consensus 47 ~~Dvl~R~lr~~G~~V~~v~~~tD--~ddki~~~A~~-~g~-~~~e~~~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~ 118 (463)
T PRK00260 47 VFDVLRRYLRYLGYKVTYVRNITD--IDDKIIKRANE-EGE-SIKELTERYIAAFHEDMDALNVLPPDIE----PRATEH 118 (463)
T ss_pred HHHHHHHHHHhcCCceEEeecCCC--CcHHHHHHHHH-cCC-CHHHHHHHHHHHHHHHHHHcCCCCCCcc----cccccc
Confidence 3455555544 3666543222211 12344444432 221 2333445577788999999999777764 222346
Q ss_pred HHHHHHHHHHHHHcCCccE
Q 044886 93 IEVTIGELKRLVEEGKIKH 111 (183)
Q Consensus 93 ~~~~~~~l~~l~~~G~ir~ 111 (183)
..++.+..++|.+.|.+-.
T Consensus 119 ~~~~~~~i~~L~~kG~aY~ 137 (463)
T PRK00260 119 IPEIIELIERLIDKGHAYE 137 (463)
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 7788899999999999853
No 193
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=25.66 E-value=2.2e+02 Score=23.57 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=45.4
Q ss_pred HHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccC--Cc-HH-HH--hcCCeEEEeccCCcc
Q 044886 97 IGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSR--DV-KE-EM--ELGIGIVAYNLLECE 164 (183)
Q Consensus 97 ~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~--~~-~~-~~--~~~i~v~a~~~l~~G 164 (183)
++.+.+|++...+. ..|=|.++...+..++.....+++|+.....-- +. .. .+ .+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 66777777776655 556666788888888888778999987665321 11 11 22 888888776544433
No 194
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=25.63 E-value=2.6e+02 Score=20.14 Aligned_cols=77 Identities=12% Similarity=-0.022 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHhhcCCeeEE
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI-KHIDLSEAFASTIRRAHTIHPITVV 134 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iG~s~~~~~~l~~~~~~~~~~~~ 134 (183)
.++..-.+++.+.+-|+..|.+.+|+= ++...++.+....+.+.+.+|.. +.|-+|....-.-..+-+...+-+.
T Consensus 7 sDh~G~~lK~~i~~~L~~~G~eV~D~G----~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaANK~~GIRAA 82 (141)
T TIGR01118 7 SDLAGKRLKDVIKNFLVDNGFEVIDVT----EGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVATKIKGMIAA 82 (141)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEcC----CCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEE
Confidence 356667889999999999998888874 23446777788888888888888 8888888776665566655556666
Q ss_pred ee
Q 044886 135 RL 136 (183)
Q Consensus 135 q~ 136 (183)
++
T Consensus 83 ~~ 84 (141)
T TIGR01118 83 EV 84 (141)
T ss_pred EE
Confidence 55
No 195
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=25.59 E-value=3.1e+02 Score=23.37 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=35.2
Q ss_pred CeEeCcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEe---ccCCCC
Q 044886 27 NVLDTSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQ---HRIDTK 90 (183)
Q Consensus 27 ~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~l---h~~~~~ 90 (183)
|++|+-..||+-+--.-.+++| +.+.+.+-+.+++|+-+ |+++| |.-|+.
T Consensus 287 NlVdfD~~yGHRrDv~gYa~aL------------e~FD~rL~e~~~~l~ed--DlLiiTADHGnDPT 339 (397)
T COG1015 287 NLVDFDSLYGHRRDVAGYAAAL------------EEFDRRLPELIENLRED--DLLIITADHGNDPT 339 (397)
T ss_pred eeeecccccccccchHHHHHHH------------HHHHHHHHHHHHhcCCC--CEEEEecCCCCCCC
Confidence 6789999999655555666666 55777788888888754 77777 444443
No 196
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=25.16 E-value=2.1e+02 Score=19.75 Aligned_cols=63 Identities=16% Similarity=0.049 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHh
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAH 126 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~ 126 (183)
..+.+.+.+.+++.|+..+.+.-++-.|-.++...+-..+.+..+++. +-+-.|+++.|....
T Consensus 11 ~~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~-------~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 11 GAPAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELG-------IPLRFFSAEELNAVE 73 (121)
T ss_dssp S--HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCT-------SEEEEE-HHHHHCHH
T ss_pred CCCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhC-------CCeEEECHHHHhcCC
Confidence 457899999999999999998778888888876554333343333322 444456677766554
No 197
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=25.14 E-value=1.3e+02 Score=17.99 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHcCCccEEEe
Q 044886 92 PIEVTIGELKRLVEEGKIKHIDL 114 (183)
Q Consensus 92 ~~~~~~~~l~~l~~~G~ir~iG~ 114 (183)
+...+.+.|..|.+.|.|+..+-
T Consensus 35 ~~~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 35 SRSTVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEEEcC
Confidence 35678999999999999988763
No 198
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.03 E-value=3.4e+02 Score=21.34 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCcCC
Q 044886 6 GPSKPESGMIALTNHAIDSGINVLDTSDV 34 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~ 34 (183)
+..++.++..++++...++|+..|+.+..
T Consensus 14 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~ 42 (268)
T cd07940 14 GVSLTPEEKLEIARQLDELGVDVIEAGFP 42 (268)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 55689999999999999999999998743
No 199
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=24.84 E-value=4e+02 Score=22.03 Aligned_cols=60 Identities=23% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcC
Q 044886 13 GMIALTNHAIDSGINVLDTSDVYGPHT------NEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 13 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg 75 (183)
-+.+-...|+++|+++||++ .+|.|. .|.++. .+.+. .+....+.+.+.+..+..++-+.
T Consensus 202 la~ANslaAi~aGa~~iD~S-l~GlG~~aGN~~tE~lv~-~L~~~-g~~tgidl~~l~~~a~~~~~p~~ 267 (337)
T PRK08195 202 LGVANSLAAVEAGATRIDGS-LAGLGAGAGNTPLEVLVA-VLDRM-GWETGVDLYKLMDAAEDLVRPLM 267 (337)
T ss_pred hHHHHHHHHHHhCCCEEEec-ChhhcccccCccHHHHHH-HHHhc-CCCCCcCHHHHHHHHHHHHhhhc
Confidence 34555667889999999988 344333 466654 45432 33456677777777776666553
No 200
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=24.82 E-value=2.1e+02 Score=25.38 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRA 125 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~ 125 (183)
+.....+..+++.+.|+-||.++ |-. .-.+..++...+++++|.++|+.= +|.-+.+.+++.
T Consensus 55 p~R~~~e~~~~I~~dL~WLGl~w-D~~----~~qSdr~~~y~~~a~~Li~~G~AY---~C~cs~eel~~~ 116 (523)
T PLN03233 55 PSKEKAEFEESIIEDLGKIEIKP-DSV----SFTSDYFEPIRCYAIILIEEGLAY---MDDTPQEEMKKE 116 (523)
T ss_pred CCccchHHHHHHHHHHHHhCCCC-CCC----ccccccHHHHHHHHHHHHHcCCeE---ecCCCHHHHHHH
Confidence 56677789999999999999985 521 122344677889999999999843 244456666555
No 201
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.78 E-value=4e+02 Score=22.20 Aligned_cols=61 Identities=16% Similarity=-0.017 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCCeEeCcCCCCCCc------hHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcC
Q 044886 13 GMIALTNHAIDSGINVLDTSDVYGPHT------NEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 13 ~~~~~l~~A~~~Gi~~~DtA~~Yg~g~------sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg 75 (183)
-+.+-.-.|+++|+++||++- .|.|. -|.++ .+|..........+.+.+.+-.+...+.+|
T Consensus 198 lA~ANalaA~~aGa~~vd~tl-~GiGeraGN~~lE~lv-~~L~~~~g~~~~idl~~l~~~s~~v~~~~~ 264 (365)
T TIGR02660 198 MATANTLAAVRAGATHVNTTV-NGLGERAGNAALEEVA-MALKRLLGRDTGIDTSRLPALSQLVARASG 264 (365)
T ss_pred hHHHHHHHHHHhCCCEEEEEe-eccccccccCCHHHHH-HHHHHhcCCCCCcCHHHHHHHHHHHHHHhC
Confidence 344556678999999999873 34332 24443 344332233345566666555544444444
No 202
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=24.77 E-value=38 Score=22.03 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHcCCccEE
Q 044886 91 VPIEVTIGELKRLVEEGKIKHI 112 (183)
Q Consensus 91 ~~~~~~~~~l~~l~~~G~ir~i 112 (183)
.+.+++...-..|.+.|.|+++
T Consensus 47 ~~R~eAv~~g~~Ll~~G~i~HV 68 (84)
T cd04438 47 TDRREARKYASSLLKLGYIRHT 68 (84)
T ss_pred CCHHHHHHHHHHHHHCCcEEec
Confidence 4567889999999999999986
No 203
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=24.69 E-value=4.5e+02 Score=22.86 Aligned_cols=108 Identities=9% Similarity=0.024 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC----------------------------------
Q 044886 6 GPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED---------------------------------- 51 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~---------------------------------- 51 (183)
+.+.....+.+.+..++..+.--+|+++.-. .-|+.+-.++.+.
T Consensus 70 ~~~~~~~~a~~~~~~~~~~nl~d~~~~p~a~--~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~ 147 (460)
T COG0076 70 CPTRVPPVAAELLVSALNKNLGDPDESPAAA--ELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRA 147 (460)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCcccChhHH--HHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHh
Confidence 3446677788888888888887777765222 2344444444310
Q ss_pred CC-------CCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcC-CccEEEecC
Q 044886 52 GK-------YSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEG-KIKHIDLSE 116 (183)
Q Consensus 52 ~k-------~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~ir~iG~s~ 116 (183)
.+ .+.-.-++..+-+++++.+-||+..--+..... +...+..++.+++.+....| .|.-.|...
T Consensus 148 ~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~ 219 (460)
T COG0076 148 LAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTD 219 (460)
T ss_pred hhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCC
Confidence 00 111335566889999999999987444433332 44455666666666665555 333444443
No 204
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=24.63 E-value=2.2e+02 Score=22.71 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCccEEEecC---c-CHHHHHHHhhcCCeeEEeee
Q 044886 96 TIGELKRLVEEGKIKHIDLSE---A-FASTIRRAHTIHPITVVRLE 137 (183)
Q Consensus 96 ~~~~l~~l~~~G~ir~iG~s~---~-~~~~l~~~~~~~~~~~~q~~ 137 (183)
.++.++++.+.| -+||+|. | .+..+++++...|.+.+-++
T Consensus 160 s~e~a~~~~d~G--~yisisG~itfk~a~~~~ev~~~iPldrLL~E 203 (256)
T COG0084 160 SAEEARKLLDLG--FYISISGIVTFKNAEKLREVARELPLDRLLLE 203 (256)
T ss_pred CHHHHHHHHHcC--eEEEECceeecCCcHHHHHHHHhCCHhHeEec
Confidence 367778888888 4888885 3 34677888877777766664
No 205
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.59 E-value=1.4e+02 Score=22.32 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=14.9
Q ss_pred HHHHHHcCCCeEeCcCCCC
Q 044886 18 TNHAIDSGINVLDTSDVYG 36 (183)
Q Consensus 18 l~~A~~~Gi~~~DtA~~Yg 36 (183)
...|-+.|+.+|+|+..-|
T Consensus 148 ~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 148 AALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHHHHhCCCeeeeccccC
Confidence 3345567999999999877
No 206
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=24.49 E-value=2.7e+02 Score=21.13 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHc
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRL 74 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~l 74 (183)
.++.|. ++++.|++.| |||...... =.-+++.| ..++..+.+-+.++.+++
T Consensus 156 LTdrQ~-~vL~~A~~~G--YFd~PR~~~----l~dLA~~l--------GISkst~~ehLRrAe~Kl 206 (215)
T COG3413 156 LTDRQL-EVLRLAYKMG--YFDYPRRVS----LKDLAKEL--------GISKSTLSEHLRRAERKL 206 (215)
T ss_pred CCHHHH-HHHHHHHHcC--CCCCCccCC----HHHHHHHh--------CCCHHHHHHHHHHHHHHH
Confidence 445554 7888899988 466554433 44444444 556666666666665555
No 207
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=24.44 E-value=3.8e+02 Score=24.00 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCCeeEEee
Q 044886 91 VPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHPITVVRL 136 (183)
Q Consensus 91 ~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~~~~~q~ 136 (183)
.+.+++++.+.+.++..+|+.+|+=.+....+..+++...+.++=+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i 455 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGI 455 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeec
Confidence 4567899999999999999999999999999888888755544333
No 208
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.29 E-value=2.2e+02 Score=26.47 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEe------CcCCCCCCchHHHHHHHH---hhCC---------------------C
Q 044886 4 FYGPSKPESGMIALTNHAIDSGINVLD------TSDVYGPHTNEILLGKVI---YEDG---------------------K 53 (183)
Q Consensus 4 ~~g~~~~~~~~~~~l~~A~~~Gi~~~D------tA~~Yg~g~sE~~~g~~l---~~~~---------------------k 53 (183)
.+|. ++-++...+++.-++.+ ++| ....||...+=..++..- .+++ .
T Consensus 583 ~lG~-~ev~D~~~~~~~~~~~~--~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~~yds~~terymg 659 (755)
T KOG2100|consen 583 NLGD-VEVKDQIEAVKKVLKLP--FIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWLYYDSTYTERYMG 659 (755)
T ss_pred hcCC-cchHHHHHHHHHHHhcc--cccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeeeeecccccHhhcC
Confidence 3455 56677778899999999 888 445666333334444331 1111 0
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccC-CCCCCHHHHHHHHHHHHHcCCc
Q 044886 54 YSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRI-DTKVPIEVTIGELKRLVEEGKI 109 (183)
Q Consensus 54 ~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~-~~~~~~~~~~~~l~~l~~~G~i 109 (183)
.+......+.+.++...+..+.. ..++++|.- |...+++......+.|+..|.=
T Consensus 660 ~p~~~~~~y~e~~~~~~~~~~~~--~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~ 714 (755)
T KOG2100|consen 660 LPSENDKGYEESSVSSPANNIKT--PKLLLIHGTEDDNVHFQQSAILIKALQNAGVP 714 (755)
T ss_pred CCccccchhhhccccchhhhhcc--CCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCc
Confidence 11122222455666666666654 449999987 5567899999999999999863
No 209
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.20 E-value=2.8e+02 Score=20.00 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHhhcCCeeEEe
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI-KHIDLSEAFASTIRRAHTIHPITVVR 135 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iG~s~~~~~~l~~~~~~~~~~~~q 135 (183)
++..-.+++.+.+-|+..|.+.+|+-. +.. +..+.-+.-..+.+.+.+|.. +.|-+|....-.-..+-+...+-+.+
T Consensus 7 DhaG~~lK~~l~~~L~~~g~eV~D~G~-~~~-~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GIraa~ 84 (143)
T TIGR01120 7 DHAGFILKEEIKAFLVERGVKVIDKGT-WSS-ERTDYPHYAKQVALAVAGGEVDGGILICGTGIGMSIAANKFAGIRAAL 84 (143)
T ss_pred CcchHHHHHHHHHHHHHCCCEEEEeCC-CCC-CCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 566678999999999999998888753 333 346677788888888888887 77888887777666666666666665
Q ss_pred eecCcccCCcHH-HH---hcCCeEEEec
Q 044886 136 LEWSLRSRDVKE-EM---ELGIGIVAYN 159 (183)
Q Consensus 136 ~~~~~~~~~~~~-~~---~~~i~v~a~~ 159 (183)
+ .++.. .+ ..|..|++++
T Consensus 85 ~------~d~~~A~~ar~hNnaNvl~lG 106 (143)
T TIGR01120 85 C------SEPYMAQMSRLHNDANVLCLG 106 (143)
T ss_pred E------CCHHHHHHHHHhcCCcEEEEC
Confidence 5 12222 22 5566676665
No 210
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=24.02 E-value=99 Score=18.86 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCCccEEEecCc
Q 044886 92 PIEVTIGELKRLVEEGKIKHIDLSEA 117 (183)
Q Consensus 92 ~~~~~~~~l~~l~~~G~ir~iG~s~~ 117 (183)
+.+.+-..|+.|++.|+|+.+...+.
T Consensus 27 s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 27 SPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp -HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred CHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 35566788899999999999988764
No 211
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=23.94 E-value=2.4e+02 Score=19.24 Aligned_cols=30 Identities=7% Similarity=0.087 Sum_probs=24.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCCccEEEec
Q 044886 85 HRIDTKVPIEVTIGELKRLVEEGKIKHIDLS 115 (183)
Q Consensus 85 h~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s 115 (183)
=..|...+...+.+.|..+++.| +..+++.
T Consensus 89 i~aD~~~~~~~vv~v~d~~~~~G-~~~v~l~ 118 (121)
T TIGR02804 89 LKSDKEAKFQDFVTITDMLKAKE-HENVQIV 118 (121)
T ss_pred EEeCCCCCHhHHHHHHHHHHHcC-CCeEEEE
Confidence 35677788999999999999998 5667775
No 212
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=23.92 E-value=2.3e+02 Score=23.48 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCcceEEeccCCCCCCHHH-------HHHHHHHHHHcCCccEEEecC-cCHHHHHHHhhcCCeeEEee
Q 044886 66 ACEASLKRLDVDCIDLYDQHRIDTKVPIEV-------TIGELKRLVEEGKIKHIDLSE-AFASTIRRAHTIHPITVVRL 136 (183)
Q Consensus 66 ~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~-------~~~~l~~l~~~G~ir~iG~s~-~~~~~l~~~~~~~~~~~~q~ 136 (183)
.+-+.|+..|+|++++ -.-+.+...+... ......++++.=.+--++... ++++.++++++....|++++
T Consensus 228 ~i~~~Le~~G~d~i~v-s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 228 ALAKALEAAGADILNT-GIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred HHHHHHHHcCCCEEEe-CCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHh
No 213
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.92 E-value=4.2e+02 Score=21.98 Aligned_cols=85 Identities=12% Similarity=-0.015 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHH-cCC---ccEEEecC--cCHHHHHHHhhcCC
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVE-EGK---IKHIDLSE--AFASTIRRAHTIHP 130 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---ir~iG~s~--~~~~~l~~~~~~~~ 130 (183)
..+.++|.+++......++..-=-++++-.-+|....+.+.++++.+++ .|. -|++-||+ +.+ .+.++.+...
T Consensus 128 nlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p-~i~~l~~~~~ 206 (342)
T PRK14454 128 NLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVP-KIYELADENL 206 (342)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChh-HHHHHHhhcc
Confidence 6799999999998877665321133444445555667789999999997 465 35677766 434 4666666533
Q ss_pred eeEEeeecCccc
Q 044886 131 ITVVRLEWSLRS 142 (183)
Q Consensus 131 ~~~~q~~~~~~~ 142 (183)
...+.+.+|..+
T Consensus 207 ~~~laisLka~d 218 (342)
T PRK14454 207 QITLAISLHAPN 218 (342)
T ss_pred cceEEEecCCCC
Confidence 333555555544
No 214
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=23.86 E-value=3.1e+02 Score=21.61 Aligned_cols=54 Identities=22% Similarity=0.165 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCcceEEeccC----C-----------C-CCCHHHHHHHHHHHHHcCCccEEEecCcCH
Q 044886 65 AACEASLKRLDVDCIDLYDQHRI----D-----------T-KVPIEVTIGELKRLVEEGKIKHIDLSEAFA 119 (183)
Q Consensus 65 ~~~~~sL~~lg~~~iDl~~lh~~----~-----------~-~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~ 119 (183)
+.+++.++.++- ..|-++||-. | + .....++.+.++.+.+.++|..+.++.+++
T Consensus 186 ~~~~~~~~~~~~-~~~~vylsiDiDvlDp~~~pg~~~p~pgGl~~~e~~~~l~~l~~~~~vvg~di~E~~P 255 (277)
T PF00491_consen 186 AVLEEILEALGS-GTDPVYLSIDIDVLDPAFAPGVGTPEPGGLSPRELLQLLRALARSGKVVGLDIVEYNP 255 (277)
T ss_dssp HHHHHHHHHHTT-STSEEEEEEEGGGBBTTTSTSBSS-BSS-B-HHHHHHHHHHHHHHSEEEEEEEE-B-G
T ss_pred hHHHHHHHHHhc-CCCeEEEEEehhhcChhhCCCcCCCcCCCCCHHHHHHHHHHHcccCCeEEEEEEEECC
Confidence 346777777752 3456666621 1 1 124788999999998999999999998765
No 215
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=23.81 E-value=3.2e+02 Score=22.59 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccC--CcHH--HH--hcCCeEEEeccCCc
Q 044886 96 TIGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSR--DVKE--EM--ELGIGIVAYNLLEC 163 (183)
Q Consensus 96 ~~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~--~~~~--~~--~~~i~v~a~~~l~~ 163 (183)
.++.+.+|++...+. ..|=+.++...+..+++...++++|+.....-- +... .+ ++|+.++..+-+.+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 367778888876655 444455778889999888778899987665421 1111 22 88888876543333
No 216
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.69 E-value=5.2e+02 Score=22.89 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=59.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCCC---------CCCCCHHHHHHHHHHHHHHcC
Q 044886 5 YGPSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGKY---------SYCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 5 ~g~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k~---------~~~~~~~~i~~~~~~sL~~lg 75 (183)
|.+ .+.+-....++.|.++|+..|-....--.=++-+...+++++.++. ++.++.+.+.+.+++ +..+|
T Consensus 91 y~~-y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~-l~~~G 168 (499)
T PRK12330 91 YRH-YEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKR-LLDMG 168 (499)
T ss_pred ccC-cchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHH-HHHcC
Confidence 444 4666777889999999997655433222112434444555554431 345556665555544 45677
Q ss_pred CCCcceEEeccCCCCCCHHHHHHHHHHHHHcCC-ccEEEecCcC
Q 044886 76 VDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGK-IKHIDLSEAF 118 (183)
Q Consensus 76 ~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-ir~iG~s~~~ 118 (183)
. |.+.|-+.-......++.+.+..++++=- =--|++=.|+
T Consensus 169 a---d~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hn 209 (499)
T PRK12330 169 A---DSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHS 209 (499)
T ss_pred C---CEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence 5 45555444344445666666666666520 1235555443
No 217
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=23.69 E-value=4.3e+02 Score=21.96 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 044886 58 GDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTI 122 (183)
Q Consensus 58 ~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l 122 (183)
...+.+.+.+.+.++..|....+++.+-.- ....++++++.+.++.+...|--+|.+|...+.+
T Consensus 107 ~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 107 VNLSKIKEWMKKRAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 345666766766677777654566665433 3456889999998887777899999999776544
No 218
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=23.64 E-value=1.3e+02 Score=26.30 Aligned_cols=89 Identities=19% Similarity=0.131 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHc-CCCeEe--CcCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCC
Q 044886 13 GMIALTNHAIDS-GINVLD--TSDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDT 89 (183)
Q Consensus 13 ~~~~~l~~A~~~-Gi~~~D--tA~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~ 89 (183)
-..+++.+.+.. |.+..= ....+| ..+...+.+. + ..+..-.+...+.+++.+++||++ +|.+. ....
T Consensus 23 ~~aDvl~R~~r~~G~~V~~v~g~D~~g----~~i~~~a~~~-g-~~~~e~~~~~~~~~~~~l~~LgI~-~D~~~--~t~~ 93 (530)
T TIGR00398 23 ILADVYARYKRLRGYEVLFVCGTDEHG----TKIELKAEQE-G-LTPKELVDKYHEEFKDDWKWLNIS-FDRFI--RTTD 93 (530)
T ss_pred HHHHHHHHHHHhcCCeEEEecccCCCC----cHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHhCCC-CCCCc--cCCC
Confidence 445666666654 655432 222333 2444444322 2 223334466788899999999997 67542 1212
Q ss_pred CCCHHHHHHHHHHHHHcCCcc
Q 044886 90 KVPIEVTIGELKRLVEEGKIK 110 (183)
Q Consensus 90 ~~~~~~~~~~l~~l~~~G~ir 110 (183)
......+.+.+++|+++|.|-
T Consensus 94 ~~~~~~v~~~~~~L~~kG~iY 114 (530)
T TIGR00398 94 EEHKEIVQKIFQKLKENGYIY 114 (530)
T ss_pred HHHHHHHHHHHHHHHHCCCEE
Confidence 223456789999999999984
No 219
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=23.50 E-value=3.8e+02 Score=21.31 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCC-CCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCCeeEEe
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTK-VPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHPITVVR 135 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~~~~~q 135 (183)
+++.++--...+-..+-+++++|-+=.+-+...- -+..+++++.+.|+++|-+-- =-++-++-.-+++.+.. ...++
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrLee~G-caavM 156 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRLEEAG-CAAVM 156 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEe-eccCCCHHHHHHHHhcC-ceEec
Confidence 6788888888888888899998888776665443 346789999999999986432 22333444444444442 34444
Q ss_pred e
Q 044886 136 L 136 (183)
Q Consensus 136 ~ 136 (183)
-
T Consensus 157 P 157 (262)
T COG2022 157 P 157 (262)
T ss_pred c
Confidence 4
No 220
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.43 E-value=3.5e+02 Score=20.90 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYG 36 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg 36 (183)
.+.++..++.+.+.++|..|+=|+..|+
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~ 160 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFS 160 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 5778888999999999999999998885
No 221
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=23.42 E-value=1.8e+02 Score=20.23 Aligned_cols=62 Identities=16% Similarity=0.044 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRA 125 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~ 125 (183)
+.+++.|.+.+++.|+..+...-++-.+..++...+-..++++.+++. +-+-.|+.+.|+..
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg-------~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHG-------WPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhC-------CCeEEeCHHHHHhc
Confidence 568899999999999999987666666677765443333444433331 22333456665543
No 222
>PRK10200 putative racemase; Provisional
Probab=23.35 E-value=3.5e+02 Score=20.88 Aligned_cols=63 Identities=17% Similarity=0.092 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCC------------CCHHHHHHHHHHHHHcCCccEEEecCcCHHHH
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTK------------VPIEVTIGELKRLVEEGKIKHIDLSEAFASTI 122 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l 122 (183)
+.+..++=++..-.+.+-++++.+.++.++-. .+.....+.++.|.+.| ++.|-+...++...
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~ 89 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKV 89 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHH
Confidence 34456666667777788889999999987421 23445677788888776 79999987665443
No 223
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=23.32 E-value=1.7e+02 Score=18.23 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 88 DTKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 88 ~~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
.+.....++=+.+.+|+++|+..+|.-.+
T Consensus 29 ~pd~k~R~vKKi~~~LV~Eg~l~yWSSGS 57 (67)
T PF08679_consen 29 FPDAKPREVKKIVNELVNEGKLEYWSSGS 57 (67)
T ss_dssp -TTS-HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCCcCHHHHHHHHHHHHhhCeEEEEcCCC
Confidence 34566788999999999999999997654
No 224
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.07 E-value=1.5e+02 Score=19.72 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 91 VPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 91 ~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
.+...++..|..|.+.|.|+.+-+.+
T Consensus 33 i~~~TVYR~L~~L~~~Gli~~~~~~~ 58 (116)
T cd07153 33 ISLATVYRTLELLEEAGLVREIELGD 58 (116)
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45677899999999999999997765
No 225
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.01 E-value=4.5e+02 Score=21.91 Aligned_cols=85 Identities=8% Similarity=0.051 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEecc-CCCCCCHHHHHHHHHHHHHc-CC-ccEEEecCc-CHHHHHHHhhcC---
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHR-IDTKVPIEVTIGELKRLVEE-GK-IKHIDLSEA-FASTIRRAHTIH--- 129 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~-~~~~~~~~~~~~~l~~l~~~-G~-ir~iG~s~~-~~~~l~~~~~~~--- 129 (183)
..++++|..++....+.++. .++-+.+-. -+|....+.+.+++..+++. |. .|++=+|+. ....++++.+..
T Consensus 128 nlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~~~i~~L~~~~~~~ 206 (345)
T PRK14457 128 SLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVPKTIPQLAELAFQR 206 (345)
T ss_pred ccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCchhhHHHHHhhhhhh
Confidence 57889999999988877753 356554444 45555677899999999876 33 356666663 345566666543
Q ss_pred ---CeeEEeeecCccc
Q 044886 130 ---PITVVRLEWSLRS 142 (183)
Q Consensus 130 ---~~~~~q~~~~~~~ 142 (183)
....+.+.+|..+
T Consensus 207 ~~~~~~~laiSLha~~ 222 (345)
T PRK14457 207 LGRLQFTLAVSLHAPN 222 (345)
T ss_pred cccCceEEEEEeCCCC
Confidence 2234555555444
No 226
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=22.98 E-value=2e+02 Score=21.76 Aligned_cols=49 Identities=18% Similarity=0.007 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK 110 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 110 (183)
..-.+...+.+.+.+++||+. +|.+. +- +.....+.+.++.|++.|.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~L~i~-~d~~~--~e--s~~~~~~~~~i~~L~~~g~~~ 112 (212)
T cd00671 64 RKLVEESIKADLETYGRLDVR-FDVWF--GE--SSYLGLMGKVVELLEELGLLY 112 (212)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-Cceec--ch--hhhhhHHHHHHHHHHHCCCEE
Confidence 344455677888899999997 68764 11 122556778888899999864
No 227
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.93 E-value=1.4e+02 Score=22.54 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhcCCeeEEeeecCccc
Q 044886 93 IEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTIHPITVVRLEWSLRS 142 (183)
Q Consensus 93 ~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~ 142 (183)
+..++..|--.++.||+-.+|+-|-..-.+..+++....+..|...||-.
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS 56 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS 56 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCCh
Confidence 46678888888999999999999988888888877765555555555433
No 228
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=22.85 E-value=32 Score=22.17 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHcCCccEEE
Q 044886 91 VPIEVTIGELKRLVEEGKIKHID 113 (183)
Q Consensus 91 ~~~~~~~~~l~~l~~~G~ir~iG 113 (183)
....++.+..++|.+.|.|.++.
T Consensus 47 ~~r~eAv~lgq~Ll~~g~I~hv~ 69 (83)
T cd04449 47 DTREEAVELGQELMNEGLIEHVS 69 (83)
T ss_pred CCHHHHHHHHHHHHHCCCEEecC
Confidence 45678999999999999999874
No 229
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=22.84 E-value=3.6e+02 Score=20.74 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCC-CCchH---HHHHHHHhhCCCC---CCCCCHHHHHHHHHHHHHHcCCCC
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYG-PHTNE---ILLGKVIYEDGKY---SYCGDPAYLRAACEASLKRLDVDC 78 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg-~g~sE---~~~g~~l~~~~k~---~~~~~~~~i~~~~~~sL~~lg~~~ 78 (183)
.+.++...+.+.+.++|..|+=|+..|+ .|-+. +.+.+.++..-+. .--.+.+...+.++---.|+|+++
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 5667888999999999999999998886 33322 3344554432111 112377778888888888888864
No 230
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=22.78 E-value=96 Score=20.03 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEe--cc-------C-CCCCCHHHHHHHHHHHHH
Q 044886 60 PAYLRAACEASLKRLDVDCIDLYDQ--HR-------I-DTKVPIEVTIGELKRLVE 105 (183)
Q Consensus 60 ~~~i~~~~~~sL~~lg~~~iDl~~l--h~-------~-~~~~~~~~~~~~l~~l~~ 105 (183)
.+.++++.+..++.||++.-+.+-+ .. | +...+..++.++++++++
T Consensus 10 d~~lK~~a~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF~~~~~n~et~~a~~e~~~ 65 (83)
T TIGR02384 10 DEELKKEAYAVFEELGLTPSTAIRMFLKQVIREQGLPFDLRLPNDETLAAIEEIKE 65 (83)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcCCCCHHHHHHHHHHHH
Confidence 3567888888888888764443321 11 1 222345788999999987
No 231
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=22.69 E-value=3.2e+02 Score=21.48 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=36.9
Q ss_pred CcceEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 78 CIDLYDQHRIDTKVPI---EVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 78 ~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
.++++.+..|-...++ ...-+.+.+++++|+ .+=+|+|..+.++++-+.
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCc--EEEEecccHHHHHHhhhe
Confidence 3566666666554443 346788999999998 788999999999888765
No 232
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=22.67 E-value=1.2e+02 Score=15.09 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 044886 6 GPSKPESGMIALTNHAIDSG 25 (183)
Q Consensus 6 g~~~~~~~~~~~l~~A~~~G 25 (183)
|.+.+.+++...++.|.+.|
T Consensus 16 g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 16 GVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred CCCcCHHHHHHHHHHHHHcc
Confidence 56678899999999998877
No 233
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=22.63 E-value=2.8e+02 Score=21.84 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK 110 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 110 (183)
..+...+.+.+.|+.||++ .|- -+-.+..++...+++++|.++|++=
T Consensus 50 ~~~~~~~~i~~dL~wLGl~-~d~----~~~qS~r~~~y~~~~~~Li~~G~aY 96 (240)
T cd09287 50 PDPEAYDMIPEDLEWLGVK-WDE----VVIASDRIELYYEYARKLIEMGGAY 96 (240)
T ss_pred chHHHHHHHHHHHHHcCCC-CCC----ccchhccHHHHHHHHHHHHHcCCcc
Confidence 5566777899999999994 562 1223345777889999999999854
No 234
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=22.33 E-value=4.4e+02 Score=21.58 Aligned_cols=52 Identities=27% Similarity=0.304 Sum_probs=37.2
Q ss_pred CcCCCC---CCchHHHHHHHHhhCCC----CCCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 31 TSDVYG---PHTNEILLGKVIYEDGK----YSYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 31 tA~~Yg---~g~sE~~~g~~l~~~~k----~~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
++..|. .+.-+..+.+.++..++ +.+....+.+.++++...++++.|.|.++
T Consensus 66 ~~~s~~~r~g~~~~pqla~~~~~l~~~v~~~d~~~Gv~~l~~al~~l~~~~~iD~Ii~V 124 (297)
T PF06626_consen 66 TPDSYAIRGGRFVEPQLARVLRALGEPVYAFDPTGGVQGLARALRELAEKLGIDAIILV 124 (297)
T ss_pred CCcccccCCCceehhHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 566664 23467777777765443 34677889999999999999998876554
No 235
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=22.32 E-value=1.5e+02 Score=20.04 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC--CcceEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 044886 56 YCGDPAYLRAACEASLKRLDVD--CIDLYDQHRIDTKVPIEVTIGELKRLVEEGK 108 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~--~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 108 (183)
...+.+.+.+.+++.|++-+++ -||++..|..........=++++.++.....
T Consensus 20 ~~p~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~~ 74 (119)
T PF02801_consen 20 TAPNGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDSA 74 (119)
T ss_dssp SSTTHHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGGG
T ss_pred cCcCHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcccc
Confidence 4557788999999999998765 7888888887533211222566777666643
No 236
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=22.21 E-value=4e+02 Score=22.01 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHH-------HHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC-CCCC--CC----CCHHHHHHHHHHHHH
Q 044886 7 PSKPESGMIALT-------NHAIDSGINVLDTSDVYGPHTNEILLGKVIYED-GKYS--YC----GDPAYLRAACEASLK 72 (183)
Q Consensus 7 ~~~~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~-~k~~--~~----~~~~~i~~~~~~sL~ 72 (183)
..++.++..+++ +.|.++|+-.++--...| -++.++|... .++. +. ....-+.+-++...+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahG-----yLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~ 214 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANG-----YLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAE 214 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-----hhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHH
Confidence 346666666554 466678998887532222 2456666431 1111 11 122235555555555
Q ss_pred HcCCCCcceEEeccCC------CCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 73 RLDVDCIDLYDQHRID------TKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 73 ~lg~~~iDl~~lh~~~------~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
.+|.+.+-+ =+-..+ .....++..+.++.|.+.| +.+|-+|.
T Consensus 215 ~vg~d~v~v-Ris~~~~~~~~~~~~~~ee~~~~~~~l~~~g-~d~i~vs~ 262 (338)
T cd02933 215 AIGADRVGI-RLSPFGTFNDMGDSDPEATFSYLAKELNKRG-LAYLHLVE 262 (338)
T ss_pred HhCCCceEE-EECccccCCCCCCCCCHHHHHHHHHHHHHcC-CcEEEEec
Confidence 666552111 111111 1124556666666666666 56666653
No 237
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=22.20 E-value=2.1e+02 Score=27.74 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=39.5
Q ss_pred HHHHHHHHHHH-----cCCCCcceEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEecCcCHHH
Q 044886 63 LRAACEASLKR-----LDVDCIDLYDQHRIDTKVPI---EVTIGELKRLVEEGKIKHIDLSEAFAST 121 (183)
Q Consensus 63 i~~~~~~sL~~-----lg~~~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iG~s~~~~~~ 121 (183)
.+-++...|.. .+ ..+|+++++.|....+. ..+++.|..+.+.|+ .|||.+|....
T Consensus 956 ~~~~la~al~~s~~~s~~-~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~--~v~iisH~~~l 1019 (1047)
T PRK10246 956 FLVSLALALALSDLVSHK-TRIDSLFLDEGFGTLDSETLDTALDALDALNASGK--TIGVISHVEAM 1019 (1047)
T ss_pred HHHHHHHHHHhhhhhhcC-CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCC--EEEEEecHHHH
Confidence 45555555442 23 25899999999877664 457899999988774 79999984444
No 238
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=22.07 E-value=3.5e+02 Score=20.31 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCc----hHHHHHHHHhhCCCC---------------CCCCCHHHHHHHHHHHHH
Q 044886 12 SGMIALTNHAIDSGINVLDTSDVYGPHT----NEILLGKVIYEDGKY---------------SYCGDPAYLRAACEASLK 72 (183)
Q Consensus 12 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~----sE~~~g~~l~~~~k~---------------~~~~~~~~i~~~~~~sL~ 72 (183)
+++..++-.++..|-..+=+...--.-+ +++++|++.+++..+ ..+++++.+ +.+..+
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~v---FsRqve 104 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEV---FSRQVE 104 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHH---HHHHHH
Confidence 4677888899999999886653221112 466777776654322 235555554 556666
Q ss_pred HcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 73 RLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 73 ~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
.+|.. =|+++==.+.. .-..++++++.+|+.| +.-||++.-+...+..+.+.
T Consensus 105 A~g~~-GDvLigISTSG--NS~nVl~Ai~~Ak~~g-m~vI~ltG~~GG~~~~~~D~ 156 (176)
T COG0279 105 ALGQP-GDVLIGISTSG--NSKNVLKAIEAAKEKG-MTVIALTGKDGGKLAGLLDV 156 (176)
T ss_pred hcCCC-CCEEEEEeCCC--CCHHHHHHHHHHHHcC-CEEEEEecCCCcccccccce
Confidence 77753 68877555543 2356899999999996 57899998777776666543
No 239
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=22.07 E-value=2.1e+02 Score=19.44 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCCcceEEeccCCCCC-CHHHHHHHHHHHHHcCCccEEEec
Q 044886 64 RAACEASLKRLDVDCIDLYDQHRIDTKV-PIEVTIGELKRLVEEGKIKHIDLS 115 (183)
Q Consensus 64 ~~~~~~sL~~lg~~~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ir~iG~s 115 (183)
+..+.+.|+.+....+|.+++..++.-. ...+....++.|.+.| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 4555555665655678888888886543 3445666666666654 5555554
No 240
>PHA01351 putative minor structural protein
Probab=21.60 E-value=33 Score=31.47 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCCC------CC--C-----CCCHHHHHHHHHHHHHHcCCCC
Q 044886 12 SGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDGK------YS--Y-----CGDPAYLRAACEASLKRLDVDC 78 (183)
Q Consensus 12 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~k------~~--~-----~~~~~~i~~~~~~sL~~lg~~~ 78 (183)
.+-.+++.++++.|+|-|=+.|.=. ..|.+-+ +.-.|| +. . ...+.-+|.-+.+.|++.|..|
T Consensus 366 nqn~rl~qr~veqgir~fvv~p~ka--yq~i~s~--~nl~gkdlf~k~f~ley~ya~qr~~rq~lrsllsralsnfgrpy 441 (1070)
T PHA01351 366 NQTARLLQRVVEQGIRQFVVTPQKA--YEEIISN--INLTGKELFLKTFTLEYEYAVQRIVRQFLRSLLSRALSNFGRPY 441 (1070)
T ss_pred chhHHHHHHHHHHhHHHHeeCcHHH--HHHHHhc--CCccchhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3456888999999999775554211 0121111 111122 11 1 1122234555677788999999
Q ss_pred cceEEecc
Q 044886 79 IDLYDQHR 86 (183)
Q Consensus 79 iDl~~lh~ 86 (183)
+|+=++..
T Consensus 442 id~~yl~s 449 (1070)
T PHA01351 442 LDFKYLDS 449 (1070)
T ss_pred eehHHHHH
Confidence 99988875
No 241
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=21.55 E-value=5.3e+02 Score=22.25 Aligned_cols=84 Identities=10% Similarity=0.012 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCC-CCCCHHHHHHHHHHHHHcCCccEEEecCc---CHHHHHHHhhcCCe
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRID-TKVPIEVTIGELKRLVEEGKIKHIDLSEA---FASTIRRAHTIHPI 131 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~-~~~~~~~~~~~l~~l~~~G~ir~iG~s~~---~~~~l~~~~~~~~~ 131 (183)
..++++++.+.+++....++ .++.+-+-.+. +....+.+++.+..++++..=..+.+++. .++.++++.+.. +
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g-v 134 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG-V 134 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC-C
Confidence 45788999999988877763 35566666653 33444668889999998821125666653 367777776653 5
Q ss_pred eEEeeecCccc
Q 044886 132 TVVRLEWSLRS 142 (183)
Q Consensus 132 ~~~q~~~~~~~ 142 (183)
+.+.+.++.++
T Consensus 135 d~V~islka~d 145 (442)
T TIGR01290 135 GHVTITINAID 145 (442)
T ss_pred CeEEEeccCCC
Confidence 67777766554
No 242
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=21.52 E-value=2.9e+02 Score=24.36 Aligned_cols=91 Identities=18% Similarity=0.140 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHc-CCCeEe------C-----cCCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcc
Q 044886 13 GMIALTNHAIDS-GINVLD------T-----SDVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCID 80 (183)
Q Consensus 13 ~~~~~l~~A~~~-Gi~~~D------t-----A~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iD 80 (183)
-..+++++.++. |++.+= . ....| ..+++.++.+. + ..+.--.+...+.+.+.+++|++.+.|
T Consensus 46 v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~---ddKii~~A~~~-g-~~~~e~a~~~~~~f~~d~~~Lni~~~~ 120 (490)
T PRK14536 46 VFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSG---EDKMVKSAQEH-G-KSVLEIAAHYTAAFFRDTARLNIERPS 120 (490)
T ss_pred HHHHHHHHHHHhcCCceEEEEeeccccccccCCcCC---ChHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 455666666664 654322 1 22223 46666666432 2 223334455777888899999998888
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHcCCccEE
Q 044886 81 LYDQHRIDTKVPIEVTIGELKRLVEEGKIKHI 112 (183)
Q Consensus 81 l~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~i 112 (183)
.+ |-.+..+.++.+.+++|.+.|.+-.-
T Consensus 121 ~~----~rat~hi~~ii~~i~~L~~kG~aY~~ 148 (490)
T PRK14536 121 IV----CNATEHIQDMIALIKRLEARGHTYCA 148 (490)
T ss_pred ee----cCcccHHHHHHHHHHHHHHCCCEEEE
Confidence 76 22346688999999999999998643
No 243
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=21.41 E-value=4.6e+02 Score=24.02 Aligned_cols=80 Identities=8% Similarity=0.002 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHhhcCCeeEEeee
Q 044886 60 PAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEE--GKIKHIDLSEAFASTIRRAHTIHPITVVRLE 137 (183)
Q Consensus 60 ~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iG~s~~~~~~l~~~~~~~~~~~~q~~ 137 (183)
.+.+++-++.....--....-+|+|+..+.. ..+..++|.+..++ +.++.|.+++.....+..+.. -|.++.
T Consensus 101 VddiR~li~~~~~~p~~g~~KV~IIDEah~L--s~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S----RC~~~~ 174 (647)
T PRK07994 101 VEDTRELLDNVQYAPARGRFKVYLIDEVHML--SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS----RCLQFH 174 (647)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEechHhC--CHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh----hheEee
Confidence 3455554444332222234568888887633 34678888888888 899999998855443334333 278888
Q ss_pred cCcccCCc
Q 044886 138 WSLRSRDV 145 (183)
Q Consensus 138 ~~~~~~~~ 145 (183)
|+.+....
T Consensus 175 f~~Ls~~e 182 (647)
T PRK07994 175 LKALDVEQ 182 (647)
T ss_pred CCCCCHHH
Confidence 88877654
No 244
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.40 E-value=4.5e+02 Score=21.41 Aligned_cols=103 Identities=13% Similarity=0.025 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeEeCcCCCCCC-chHHH--HHHHHhhCC-CC-CCCCCHHHHH----------HHHHHHHHH
Q 044886 9 KPESGMIALTNHAIDSGINVLDTSDVYGPH-TNEIL--LGKVIYEDG-KY-SYCGDPAYLR----------AACEASLKR 73 (183)
Q Consensus 9 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g-~sE~~--~g~~l~~~~-k~-~~~~~~~~i~----------~~~~~sL~~ 73 (183)
.+.++..+.++.+.+.|++.|-........ ..+.+ +-+.+++.. .. ....++.++. +..-+.|++
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~Lk~ 151 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERLKE 151 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHHHH
Confidence 688999999999999999877654221111 12211 334444433 11 1235555442 445566677
Q ss_pred cCCCCcceE--Ee------ccCCC-CCCHHHHHHHHHHHHHcCCccE
Q 044886 74 LDVDCIDLY--DQ------HRIDT-KVPIEVTIGELKRLVEEGKIKH 111 (183)
Q Consensus 74 lg~~~iDl~--~l------h~~~~-~~~~~~~~~~l~~l~~~G~ir~ 111 (183)
.|++.++.. .. +...+ ..+.++.+++++.+++.|.--.
T Consensus 152 aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~ 198 (340)
T TIGR03699 152 AGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTT 198 (340)
T ss_pred cCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 788877631 11 11111 2357788999999999996443
No 245
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=21.40 E-value=83 Score=21.15 Aligned_cols=36 Identities=28% Similarity=0.155 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 93 IEVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 93 ~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
..+.++.+.++.++|+++-.=-..|+.+.+.++++.
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~ 115 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHER 115 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHH
Confidence 346689999999999998876667877777776543
No 246
>PF14177 YkyB: YkyB-like protein
Probab=21.26 E-value=93 Score=22.29 Aligned_cols=18 Identities=50% Similarity=0.756 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCccEEEec
Q 044886 98 GELKRLVEEGKIKHIDLS 115 (183)
Q Consensus 98 ~~l~~l~~~G~ir~iG~s 115 (183)
++|.+|.+||+.+-||+-
T Consensus 31 ~aL~Kll~E~kA~kiGlH 48 (140)
T PF14177_consen 31 KALQKLLEEGKAKKIGLH 48 (140)
T ss_pred HHHHHHHHcCcceEEEEe
Confidence 789999999999999986
No 247
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=21.26 E-value=3.6e+02 Score=21.74 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=38.8
Q ss_pred CcceEEeccCCCCCCH---HHHHHHHHHHHHcCCccEEEecCcCHHHHHHHhhc
Q 044886 78 CIDLYDQHRIDTKVPI---EVTIGELKRLVEEGKIKHIDLSEAFASTIRRAHTI 128 (183)
Q Consensus 78 ~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~~~~ 128 (183)
..+++++..|....+. .++++.+.+++++|+ .|=+++|..+.++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~--till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK--TILLTTHFMEEAERLCDR 207 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC--EEEEECCCHHHHHHhCCE
Confidence 4789999999776664 457899999988875 788899999888887554
No 248
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.17 E-value=4.9e+02 Score=21.68 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHH-cCC---ccEEEecCcC-HHHHHHHhh
Q 044886 57 CGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVE-EGK---IKHIDLSEAF-ASTIRRAHT 127 (183)
Q Consensus 57 ~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---ir~iG~s~~~-~~~l~~~~~ 127 (183)
..+.++|.+++....+..+++.+ .+.-.-+|...++++.++++.+.+ .|. .+++-||+.. ...+.++..
T Consensus 130 ~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 130 NLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred CCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhh
Confidence 56889999998887766554433 433434555567889999998886 555 4788887633 445555544
No 249
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=21.16 E-value=90 Score=16.10 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCCeEeC
Q 044886 15 IALTNHAIDSGINVLDT 31 (183)
Q Consensus 15 ~~~l~~A~~~Gi~~~Dt 31 (183)
.+.++.++++|+..|-|
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 46789999999998865
No 250
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=21.11 E-value=3.3e+02 Score=19.64 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCc-cEEEecCcCHHHHHHHhhcCCeeEE
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKI-KHIDLSEAFASTIRRAHTIHPITVV 134 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~i-r~iG~s~~~~~~l~~~~~~~~~~~~ 134 (183)
.++..-.+++.+.+-|+..|.+.+|+= + .+.++.+....+.+.+.+|.. +.|-+|....-.-..+-+...+-+.
T Consensus 7 sDhaG~~lK~~l~~~L~~~g~eV~D~G----~-~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRaA 81 (141)
T PRK12613 7 ADAHGNALKELIKSFLQEEGYDIIDVT----D-INSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVAA 81 (141)
T ss_pred eCcchHHHHHHHHHHHHHCCCEEEEcC----C-CCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEEE
Confidence 356667899999999999998888874 2 235677788888888888888 8888888776665566666666666
Q ss_pred eeecCcccCCcHH-HH---hcCCeEEEec
Q 044886 135 RLEWSLRSRDVKE-EM---ELGIGIVAYN 159 (183)
Q Consensus 135 q~~~~~~~~~~~~-~~---~~~i~v~a~~ 159 (183)
++ .+... .+ ..|..|++++
T Consensus 82 ~~------~d~~~A~~ar~hNnaNVl~lG 104 (141)
T PRK12613 82 EV------SDERSAYMTRGHNNARMITMG 104 (141)
T ss_pred EE------CCHHHHHHHHHHcCCcEEEEC
Confidence 65 12222 23 5566676654
No 251
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=20.98 E-value=3.7e+02 Score=21.18 Aligned_cols=51 Identities=10% Similarity=0.028 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccE
Q 044886 56 YCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKH 111 (183)
Q Consensus 56 ~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~ 111 (183)
+.....+..+++.+.|+-||.++=..+. .+..++...+++++|.++|++=.
T Consensus 45 ~~R~~~~~~~~I~~dL~wlGl~wD~~~~-----QS~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 45 PEKEEEEYVDSIKEDVKWLGIKPYKVTY-----ASDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred CcccchHHHHHHHHHHHHcCCCCCCcee-----cccCHHHHHHHHHHHHHcCCeec
Confidence 4556678899999999999987422221 22345667899999999998644
No 252
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.94 E-value=1.6e+02 Score=21.04 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCccEEEecC
Q 044886 89 TKVPIEVTIGELKRLVEEGKIKHIDLSE 116 (183)
Q Consensus 89 ~~~~~~~~~~~l~~l~~~G~ir~iG~s~ 116 (183)
+...+..++++|..|.+.|.|..+=+.+
T Consensus 51 p~islaTVYr~L~~l~e~Glv~~~~~~~ 78 (145)
T COG0735 51 PGISLATVYRTLKLLEEAGLVHRLEFEG 78 (145)
T ss_pred CCCCHhHHHHHHHHHHHCCCEEEEEeCC
Confidence 3455778999999999999999999876
No 253
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=20.69 E-value=1.6e+02 Score=25.97 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCcc
Q 044886 58 GDPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIK 110 (183)
Q Consensus 58 ~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir 110 (183)
.-.+...+.+.+.+++||++ .|.+. +.........+.+.+.+|.+.|.|-
T Consensus 70 ~~~~~~~~~~~~~~~~l~i~-~d~~~--~t~~~~~~~~~~~~~~~L~~~G~~y 119 (556)
T PRK12268 70 ELADKYHEEHKEDFKKLGIS-YDLFT--RTTSPNHHEVVQEFFLKLYENGYIY 119 (556)
T ss_pred HHHHHHHHHHHHHHHHcCCc-CCCCc--CCCCHHHHHHHHHHHHHHHHCCCeE
Confidence 34456788899999999996 57532 2222234667899999999999975
No 254
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=20.69 E-value=4.7e+02 Score=21.27 Aligned_cols=142 Identities=15% Similarity=0.042 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCC---CC----CCCCCHHHHHHHHHHHHHHcCCCCcceE
Q 044886 10 PESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDG---KY----SYCGDPAYLRAACEASLKRLDVDCIDLY 82 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~---k~----~~~~~~~~i~~~~~~sL~~lg~~~iDl~ 82 (183)
+.++..+.++...+.|++.|=.-- +. ..+...-+++++.- +. ....+.+..+ .-+.|+.+ ++.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a~--~~~~l~~~-----~~~ 201 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRFPQIPLVIDANESYDLQDFP--RLKELDRY-----QLL 201 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhCCCCcEEEECCCCCCHHHHH--HHHHHhhC-----CCc
Confidence 456777888888899999863221 11 23333344555421 11 1123444431 22334433 444
Q ss_pred EeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccCC-cHH---HH--hcCCeE
Q 044886 83 DQHRIDTKVPIEVTIGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSRD-VKE---EM--ELGIGI 155 (183)
Q Consensus 83 ~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~---~~--~~~i~v 155 (183)
++-.| .+. +-++.+.++++.-.+. ..|=|.++...+..+++....+++|+.....-.- ... .+ .+|+.+
T Consensus 202 ~iEeP---~~~-~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~ 277 (324)
T TIGR01928 202 YIEEP---FKI-DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKV 277 (324)
T ss_pred EEECC---CCh-hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeE
Confidence 44444 322 3367788888876655 4555568889999999988899999877654311 111 22 889999
Q ss_pred EEeccCCccc
Q 044886 156 VAYNLLECEF 165 (183)
Q Consensus 156 ~a~~~l~~G~ 165 (183)
+..+.+.+|+
T Consensus 278 ~~~~~~es~i 287 (324)
T TIGR01928 278 WIGGMLETGI 287 (324)
T ss_pred EEcceEcccH
Confidence 8876666653
No 255
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=20.68 E-value=4.2e+02 Score=20.68 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhC-C-CC------CCCCCHHHHHHHHHHHHHHcCCCCcce
Q 044886 10 PESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYED-G-KY------SYCGDPAYLRAACEASLKRLDVDCIDL 81 (183)
Q Consensus 10 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~-~-k~------~~~~~~~~i~~~~~~sL~~lg~~~iDl 81 (183)
+.++..+.++.+.+.|++.|-.--.-. ...+...-+++++. + .. ....+.+...+-+ +.|+.++ +
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~-~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~-~~l~~~~-----i 157 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRD-PARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRAL-RALEDLG-----L 157 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCC-HHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHH-HHHHhcC-----C
Confidence 456777888889999999887532111 01223333445442 2 11 1223443333222 3344443 4
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCCcc-EEEecCcCHHHHHHHhhcCCeeEEeeecCcccCC-cHH---HH--hcCCe
Q 044886 82 YDQHRIDTKVPIEVTIGELKRLVEEGKIK-HIDLSEAFASTIRRAHTIHPITVVRLEWSLRSRD-VKE---EM--ELGIG 154 (183)
Q Consensus 82 ~~lh~~~~~~~~~~~~~~l~~l~~~G~ir-~iG~s~~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~---~~--~~~i~ 154 (183)
.++..|-+.. -++.+.++++.-.+. ..|=+-++...+.++++....+++|+..+..--- ... .+ .+|+.
T Consensus 158 ~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~ 233 (265)
T cd03315 158 DYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLP 233 (265)
T ss_pred CEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCc
Confidence 4445553322 356677787776555 3333447888899999888899999987765421 111 23 89999
Q ss_pred EEEeccCCccc
Q 044886 155 IVAYNLLECEF 165 (183)
Q Consensus 155 v~a~~~l~~G~ 165 (183)
++..+.+.+++
T Consensus 234 ~~~~~~~~s~i 244 (265)
T cd03315 234 VMVGSMIESGL 244 (265)
T ss_pred EEecCccchHH
Confidence 99877666553
No 256
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=20.58 E-value=4.9e+02 Score=21.52 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCeEeCcCCCCC--CchHH----HHHHHHhh---------------C-------CC---------
Q 044886 11 ESGMIALTNHAIDSGINVLDTSDVYGP--HTNEI----LLGKVIYE---------------D-------GK--------- 53 (183)
Q Consensus 11 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--g~sE~----~~g~~l~~---------------~-------~k--------- 53 (183)
++...++-+..+++|.+.+-|...+.. +..|. ..-+...+ . ++
T Consensus 52 Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsiGp~~A~l~~g~ 131 (317)
T KOG1579|consen 52 PEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSIGPYGATLADGS 131 (317)
T ss_pred hHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeecccccceecCCc
Confidence 477889999999999999988753331 11111 11111110 0 11
Q ss_pred -----CCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccCC
Q 044886 54 -----YSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRID 88 (183)
Q Consensus 54 -----~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~ 88 (183)
+....+.+++.+-..+.|+.+.-.-+|++.+--..
T Consensus 132 eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip 171 (317)
T KOG1579|consen 132 EYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIP 171 (317)
T ss_pred ccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecC
Confidence 12344667788888888888865569999887653
No 257
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=20.57 E-value=4e+02 Score=20.46 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeEeCcCCCCCCchHHHHHHHHhhCC-------CCCCCCCH-HHHHHHHHHHHHHcCCCC
Q 044886 7 PSKPESGMIALTNHAIDSGINVLDTSDVYGPHTNEILLGKVIYEDG-------KYSYCGDP-AYLRAACEASLKRLDVDC 78 (183)
Q Consensus 7 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~g~sE~~~g~~l~~~~-------k~~~~~~~-~~i~~~~~~sL~~lg~~~ 78 (183)
+..+.++..++.+.|.+.|+.-+=..+.|- ....+.|+..+ .++....+ +.-...+++.+ ++|.|-
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av-~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAI-KYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHH-HcCCCE
Confidence 346889999999999999887765544432 33344454321 13333333 33333344444 469999
Q ss_pred cceEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEecC--cCHHHHHHHhhc---CCeeEEeee--cCcccCCcH
Q 044886 79 IDLYDQHRIDTKVPIEVTIGELKRLVEE--GKIKHIDLSE--AFASTIRRAHTI---HPITVVRLE--WSLRSRDVK 146 (183)
Q Consensus 79 iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iG~s~--~~~~~l~~~~~~---~~~~~~q~~--~~~~~~~~~ 146 (183)
+|+++-...-.+.+.+.+.+.+.+.++. |+.--+=+-+ .+.+.+.++.+. ...|++... |.+......
T Consensus 87 iDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~ 163 (211)
T TIGR00126 87 VDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVE 163 (211)
T ss_pred EEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHH
Confidence 9998755443345567777777777765 4432221222 344555555444 567899987 765444433
No 258
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.50 E-value=3.7e+02 Score=24.84 Aligned_cols=67 Identities=7% Similarity=0.044 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCcceEEeccCCCCCCHHHHHHHHHHHHHc--CCccEEEecCcCHHHHHHHhh
Q 044886 59 DPAYLRAACEASLKRLDVDCIDLYDQHRIDTKVPIEVTIGELKRLVEE--GKIKHIDLSEAFASTIRRAHT 127 (183)
Q Consensus 59 ~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~ir~iG~s~~~~~~l~~~~~ 127 (183)
+.+.|++-++.....-.....-+++|+..+.. ....+++|.+..++ +.+..|.+++.....+..+..
T Consensus 105 gVDdIReLie~~~~~P~~gr~KViIIDEah~L--s~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 105 GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML--TNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred CHHHHHHHHHHHHhchhcCCceEEEEEChHhc--CHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 45666766665544433445678888887643 24567777777777 899999999965555545443
No 259
>PRK13796 GTPase YqeH; Provisional
Probab=20.26 E-value=5.1e+02 Score=21.57 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHcC---CCeEeCcCCCCCCchHHHHHHHHhhC------CCCC---CCCCHHHHHHHHHHHHHHcC
Q 044886 8 SKPESGMIALTNHAIDSG---INVLDTSDVYGPHTNEILLGKVIYED------GKYS---YCGDPAYLRAACEASLKRLD 75 (183)
Q Consensus 8 ~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~g~sE~~~g~~l~~~------~k~~---~~~~~~~i~~~~~~sL~~lg 75 (183)
.++.++..++++..-+.- +-.+|..+.-+ .-...+.+..... +|.. .....+.+.+.++...+.+|
T Consensus 53 ~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 53 SLTDDDFLKLLNGIGDSDALVVNVVDIFDFNG--SWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred CCCHHHHHHHHHhhcccCcEEEEEEECccCCC--chhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC
Confidence 356777777777776554 34577655433 2233344433211 1211 12234566666676677778
Q ss_pred CCCcceEEeccCCCCCCHHHHHHHHHHHHHcCCccEEEecCcCHHHHHHH
Q 044886 76 VDCIDLYDQHRIDTKVPIEVTIGELKRLVEEGKIKHIDLSEAFASTIRRA 125 (183)
Q Consensus 76 ~~~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ir~iG~s~~~~~~l~~~ 125 (183)
....+++++-... ...++++++.+.++.+.+.+--+|.+|.....+--.
T Consensus 131 ~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~ 179 (365)
T PRK13796 131 LRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINR 179 (365)
T ss_pred CCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHH
Confidence 6555777765543 356888899998888888999999999876654433
No 260
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=20.16 E-value=3e+02 Score=23.91 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHc-CCCeEeCc--CCCCCCchHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHHcCCCCcceEEeccCCC
Q 044886 13 GMIALTNHAIDS-GINVLDTS--DVYGPHTNEILLGKVIYEDGKYSYCGDPAYLRAACEASLKRLDVDCIDLYDQHRIDT 89 (183)
Q Consensus 13 ~~~~~l~~A~~~-Gi~~~DtA--~~Yg~g~sE~~~g~~l~~~~k~~~~~~~~~i~~~~~~sL~~lg~~~iDl~~lh~~~~ 89 (183)
-..+++.+.++. |++..-.. ...+ .+++-++.+. + ..+..-.+...+.+.+.+++||+.+.+. .+..
T Consensus 44 v~~Dvl~R~lr~~G~~V~~v~n~tD~d----dkIi~~A~~~-g-~~~~e~a~~~~~~f~~dl~~LgI~~d~~----~~ra 113 (465)
T TIGR00435 44 IVFDVLRRYLRYLGYKVQYVQNITDID----DKIIKRAREN-G-ESVYEVSERFIEAYFEDMKALNVLPPDL----EPRA 113 (465)
T ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCcc----HHHHHHHHHc-C-CCHHHHHHHHHHHHHHHHHHhCCCCCcC----Cccc
Confidence 344555555553 65543211 1222 3454444322 1 1222334567788899999999986654 2223
Q ss_pred CCCHHHHHHHHHHHHHcCCccE
Q 044886 90 KVPIEVTIGELKRLVEEGKIKH 111 (183)
Q Consensus 90 ~~~~~~~~~~l~~l~~~G~ir~ 111 (183)
......+.+.+++|++.|.+-.
T Consensus 114 T~hi~~i~~~i~~L~ekG~aY~ 135 (465)
T TIGR00435 114 TEHIDEIIEFIEQLIEKGYAYV 135 (465)
T ss_pred cccHHHHHHHHHHHHHCCCEEE
Confidence 3567788899999999998743
Done!